Query gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 265
No_of_seqs 125 out of 8007
Neff 8.9
Searched_HMMs 39220
Date Sun May 29 20:09:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780806.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03453 partition_RepA plasm 100.0 0 0 358.2 14.8 254 2-256 100-379 (387)
2 TIGR03371 cellulose_yhjQ cellu 100.0 0 0 353.7 16.5 243 7-258 2-245 (246)
3 PRK13869 plasmid-partitioning 100.0 0 0 352.8 14.0 253 3-256 118-396 (405)
4 TIGR01969 minD_arch cell divis 100.0 0 0 349.7 14.2 231 7-256 1-233 (258)
5 PRK10818 cell division inhibit 100.0 0 0 332.3 15.3 245 6-260 2-252 (270)
6 CHL00175 minD septum-site dete 100.0 0 0 328.7 15.6 242 4-260 11-256 (279)
7 TIGR01968 minD_bact septum sit 100.0 0 0 336.6 8.1 243 6-260 1-252 (272)
8 PRK13705 plasmid-partitioning 100.0 0 0 328.5 15.1 254 2-257 102-379 (388)
9 PHA02519 plasmid partition pro 100.0 0 0 328.5 14.8 254 3-257 103-379 (387)
10 pfam06564 YhjQ YhjQ protein. T 100.0 0 0 329.8 12.7 238 7-260 2-241 (244)
11 COG1192 Soj ATPases involved i 100.0 0 0 312.9 16.6 254 5-261 1-257 (259)
12 PHA02518 ParA-like protein; Pr 100.0 0 0 302.3 16.4 210 7-259 1-210 (211)
13 pfam00142 Fer4_NifH 4Fe-4S iro 100.0 0 0 297.8 14.6 241 7-260 1-250 (269)
14 cd02040 NifH NifH gene encodes 100.0 0 0 294.6 16.0 239 7-259 2-250 (270)
15 PRK13230 nitrogenase reductase 100.0 1.4E-45 0 286.8 16.0 242 7-258 2-261 (292)
16 PRK11670 putative ATPase; Prov 100.0 2.9E-44 0 277.9 19.0 242 5-263 106-358 (369)
17 COG2894 MinD Septum formation 100.0 7E-45 0 281.7 9.1 242 6-259 2-250 (272)
18 cd02036 MinD Bacterial cell di 100.0 1.3E-43 0 274.2 13.2 178 8-247 1-179 (179)
19 PRK13232 nifH nitrogenase redu 100.0 1.2E-42 0 268.4 14.8 237 7-259 2-249 (273)
20 PRK13235 nifH nitrogenase redu 100.0 4.1E-42 0 265.3 15.7 238 7-258 2-250 (274)
21 PRK10037 cell division protein 100.0 1.3E-42 0 268.2 11.7 236 7-258 2-239 (250)
22 PRK13233 nifH nitrogenase redu 100.0 2.5E-41 0 260.7 15.5 239 6-259 2-252 (275)
23 COG0455 flhG Antiactivator of 100.0 4.8E-41 1.4E-45 259.1 14.6 236 5-257 1-241 (262)
24 pfam01656 CbiA CobQ/CobB/MinD/ 100.0 7.6E-40 2E-44 252.1 10.3 204 9-226 1-212 (212)
25 cd02032 Bchl_like This family 100.0 1.3E-37 3.2E-42 239.2 14.6 234 8-258 2-247 (267)
26 PRK13231 nitrogenase reductase 100.0 7.9E-37 2E-41 234.5 15.6 233 6-258 2-242 (264)
27 cd02117 NifH_like This family 100.0 9.5E-38 2.4E-42 239.9 10.7 201 7-221 1-212 (212)
28 PRK13185 chlL protochlorophyll 100.0 2.8E-36 7.1E-41 231.3 15.4 237 6-258 2-248 (269)
29 pfam09140 MipZ ATPase MipZ. Mi 100.0 1.6E-36 4.1E-41 232.7 13.2 210 7-240 1-234 (261)
30 KOG3022 consensus 100.0 1.5E-35 3.9E-40 227.0 15.5 240 4-260 45-297 (300)
31 CHL00072 chlL photochlorophyll 100.0 1.8E-34 4.5E-39 220.8 13.3 235 8-258 2-247 (271)
32 PRK13236 nitrogenase reductase 100.0 5.9E-33 1.5E-37 211.9 16.3 243 1-258 1-254 (295)
33 pfam07015 VirC1 VirC1 protein. 100.0 3.7E-33 9.4E-38 213.1 15.3 212 7-256 2-220 (231)
34 PRK13234 nifH nitrogenase redu 100.0 3.7E-32 9.3E-37 207.3 15.4 239 5-258 3-252 (293)
35 TIGR01287 nifH nitrogenase iro 100.0 1.4E-32 3.4E-37 209.8 12.8 238 7-258 1-251 (278)
36 TIGR01281 DPOR_bchL light-inde 100.0 7.1E-32 1.8E-36 205.6 16.2 236 7-257 1-252 (275)
37 PRK13849 putative crown gall t 100.0 7.3E-32 1.8E-36 205.5 15.3 195 7-240 2-201 (231)
38 cd03110 Fer4_NifH_child This p 100.0 3E-32 7.8E-37 207.7 8.9 177 9-219 2-179 (179)
39 COG4963 CpaE Flp pilus assembl 100.0 1.5E-30 3.9E-35 197.8 11.8 236 4-257 102-344 (366)
40 COG3640 CooC CO dehydrogenase 100.0 1.1E-28 2.7E-33 187.0 14.5 229 8-257 2-253 (255)
41 TIGR01007 eps_fam capsular exo 100.0 7E-30 1.8E-34 194.0 8.4 180 1-195 14-197 (207)
42 COG0489 Mrp ATPases involved i 100.0 1.1E-28 2.7E-33 187.0 13.1 205 4-225 55-262 (265)
43 PRK11519 tyrosine kinase; Prov 100.0 6.2E-29 1.6E-33 188.4 11.0 179 1-195 521-702 (720)
44 COG1348 NifH Nitrogenase subun 100.0 1.1E-28 2.7E-33 187.0 11.7 239 7-259 2-251 (278)
45 cd02037 MRP-like MRP (Multiple 100.0 8E-29 2E-33 187.8 9.9 158 8-222 1-169 (169)
46 PRK09841 cryptic autophosphory 100.0 1.7E-28 4.4E-33 185.8 10.8 179 1-195 526-707 (726)
47 cd02042 ParA ParA and ParB of 100.0 2.8E-28 7.3E-33 184.5 8.2 104 8-189 1-104 (104)
48 cd02038 FleN-like FleN is a me 99.9 1.9E-27 4.9E-32 179.7 10.2 120 8-205 1-120 (139)
49 COG1149 MinD superfamily P-loo 99.9 1.5E-26 3.7E-31 174.6 14.1 234 7-255 2-281 (284)
50 cd00550 ArsA_ATPase Oxyanion-t 99.9 1E-27 2.6E-32 181.3 7.3 195 7-210 1-229 (254)
51 cd02033 BchX Chlorophyllide re 99.9 5.6E-26 1.4E-30 171.2 14.3 237 2-257 27-275 (329)
52 TIGR03029 EpsG chain length de 99.9 1.2E-26 3.2E-31 175.0 10.8 173 3-190 100-274 (274)
53 cd02035 ArsA ArsA ATPase funct 99.9 7.4E-27 1.9E-31 176.3 7.5 172 9-194 1-183 (217)
54 TIGR03018 pepcterm_TyrKin exop 99.9 7.2E-25 1.8E-29 164.7 10.9 171 2-189 31-207 (207)
55 cd03111 CpaE_like This protein 99.9 5.6E-24 1.4E-28 159.5 7.8 105 8-190 1-106 (106)
56 pfam02374 ArsA_ATPase Anion-tr 99.8 6.9E-21 1.7E-25 141.4 7.4 180 7-194 2-248 (304)
57 TIGR02016 BchX chlorophyllide 99.8 2.9E-18 7.4E-23 126.1 8.7 203 7-226 1-223 (355)
58 cd02034 CooC The accessory pro 99.7 1.2E-17 3.1E-22 122.5 7.5 115 9-153 2-116 (116)
59 TIGR00345 arsA arsenite-activa 99.7 5E-18 1.3E-22 124.7 5.1 46 11-56 1-48 (330)
60 cd01983 Fer4_NifH The Fer4_Nif 99.7 9.7E-17 2.5E-21 117.2 7.2 78 8-168 1-81 (99)
61 COG0003 ArsA Predicted ATPase 99.7 7.5E-17 1.9E-21 117.9 4.6 126 6-136 2-138 (322)
62 TIGR01005 eps_transp_fam exopo 99.5 1.2E-14 3E-19 105.0 5.9 183 5-201 559-747 (778)
63 KOG2825 consensus 99.3 3.7E-12 9.5E-17 90.5 6.4 53 6-58 18-70 (323)
64 PRK00090 bioD dithiobiotin syn 98.9 4.5E-09 1.1E-13 72.5 8.4 193 8-225 1-205 (223)
65 pfam00448 SRP54 SRP54-type pro 98.8 1.9E-08 4.9E-13 68.8 8.5 161 6-213 1-170 (196)
66 TIGR00959 ffh signal recogniti 98.8 4.7E-09 1.2E-13 72.3 5.3 176 4-225 100-287 (439)
67 PRK12374 putative dithiobiotin 98.8 7.6E-08 1.9E-12 65.3 9.7 196 7-225 3-207 (231)
68 cd03115 SRP The signal recogni 98.8 6.3E-08 1.6E-12 65.8 9.0 159 8-213 2-169 (173)
69 COG1703 ArgK Putative periplas 98.8 1.8E-07 4.5E-12 63.1 11.1 150 5-194 50-202 (323)
70 PRK12726 flagellar biosynthesi 98.7 4.7E-08 1.2E-12 66.5 7.9 42 4-46 204-245 (407)
71 PRK13896 cobyrinic acid a,c-di 98.7 2.7E-08 6.8E-13 68.0 6.6 173 7-225 2-179 (432)
72 PRK10416 cell division protein 98.7 9.2E-08 2.3E-12 64.8 9.1 165 3-213 292-470 (499)
73 PRK00784 cobyric acid synthase 98.7 6.1E-08 1.6E-12 65.8 7.7 208 5-222 2-229 (492)
74 pfam03308 ArgK ArgK protein. T 98.7 3.3E-07 8.4E-12 61.6 11.4 164 4-209 27-193 (267)
75 PRK01077 cobyrinic acid a,c-di 98.7 6.7E-08 1.7E-12 65.6 7.7 171 6-224 3-184 (451)
76 PRK05703 flhF flagellar biosyn 98.7 6.3E-08 1.6E-12 65.7 7.4 168 3-224 207-390 (412)
77 COG0541 Ffh Signal recognition 98.7 3.9E-08 9.9E-13 67.0 6.2 164 4-213 98-269 (451)
78 TIGR00313 cobQ cobyric acid sy 98.7 2.4E-08 6.1E-13 68.2 4.9 198 11-224 3-227 (502)
79 PRK06731 flhF flagellar biosyn 98.7 1.4E-07 3.6E-12 63.7 8.3 43 3-46 72-114 (270)
80 PRK11889 flhF flagellar biosyn 98.7 8.6E-08 2.2E-12 65.0 6.9 173 3-227 238-425 (436)
81 PRK09435 arginine/ornithine tr 98.6 8.9E-07 2.3E-11 59.0 11.2 166 3-208 46-215 (325)
82 PRK12724 flagellar biosynthesi 98.6 1.6E-07 4.1E-12 63.4 7.3 169 3-225 220-405 (432)
83 pfam03029 ATP_bind_1 Conserved 98.6 1.4E-07 3.6E-12 63.8 6.9 103 14-140 3-106 (234)
84 PRK00771 signal recognition pa 98.6 2.1E-07 5.5E-12 62.7 6.9 161 5-213 96-264 (433)
85 PRK10867 signal recognition pa 98.6 2.3E-07 6E-12 62.4 6.9 163 4-213 98-270 (453)
86 TIGR00750 lao LAO/AO transport 98.5 5.6E-07 1.4E-11 60.2 8.5 212 4-256 36-265 (333)
87 PRK06995 flhF flagellar biosyn 98.5 2.8E-07 7E-12 62.0 6.8 170 4-226 174-358 (404)
88 PRK13768 GTPase; Provisional 98.5 1.2E-06 3.1E-11 58.2 8.9 161 9-194 5-175 (253)
89 COG1797 CobB Cobyrinic acid a, 98.5 4.2E-07 1.1E-11 60.9 6.4 171 8-225 2-183 (451)
90 PRK13886 conjugal transfer pro 98.5 2.6E-07 6.7E-12 62.1 5.1 41 6-46 2-42 (241)
91 PRK12723 flagellar biosynthesi 98.5 1.1E-06 2.9E-11 58.4 8.3 43 3-46 171-217 (388)
92 cd04169 RF3 RF3 subfamily. Pe 98.4 8E-07 2E-11 59.3 7.0 92 121-220 68-162 (267)
93 COG1419 FlhF Flagellar GTP-bin 98.4 1.5E-06 3.9E-11 57.7 8.1 172 4-226 201-385 (407)
94 pfam10609 ParA ParA/MinD ATPas 98.4 1.9E-07 4.9E-12 62.9 2.4 62 124-191 1-64 (81)
95 cd01886 EF-G Elongation factor 98.3 1E-06 2.6E-11 58.7 5.8 91 121-219 61-154 (270)
96 PRK12727 flagellar biosynthesi 98.3 9E-07 2.3E-11 59.0 5.1 168 4-226 346-529 (557)
97 KOG0781 consensus 98.3 9.6E-07 2.5E-11 58.8 5.2 156 3-193 375-542 (587)
98 KOG0780 consensus 98.3 3.2E-06 8.2E-11 55.8 7.5 43 3-46 98-140 (483)
99 COG0552 FtsY Signal recognitio 98.3 1.9E-06 4.9E-11 57.1 6.1 165 3-213 136-314 (340)
100 cd04170 EF-G_bact Elongation f 98.3 1.5E-06 3.9E-11 57.7 5.3 92 122-220 62-155 (268)
101 cd03109 DTBS Dethiobiotin synt 98.2 8E-06 2E-10 53.5 8.6 63 150-219 72-134 (134)
102 COG0132 BioD Dethiobiotin synt 98.2 1.7E-05 4.3E-10 51.6 10.1 194 6-224 2-207 (223)
103 PRK00741 prfC peptide chain re 98.2 3.9E-06 1E-10 55.3 6.7 90 122-219 77-169 (526)
104 cd04168 TetM_like Tet(M)-like 98.2 2.6E-06 6.7E-11 56.3 5.3 87 122-215 62-150 (237)
105 TIGR03499 FlhF flagellar biosy 98.2 1.9E-06 4.9E-11 57.1 3.8 41 5-46 193-235 (282)
106 TIGR00064 ftsY signal recognit 98.2 4.6E-06 1.2E-10 54.9 5.7 166 2-213 78-259 (284)
107 cd03114 ArgK-like The function 98.1 1.4E-05 3.6E-10 52.1 8.0 123 8-158 1-125 (148)
108 KOG1532 consensus 98.1 5.6E-06 1.4E-10 54.4 5.9 115 5-142 18-134 (366)
109 PRK05632 phosphate acetyltrans 98.1 4.6E-05 1.2E-09 49.1 10.1 164 6-194 1-175 (702)
110 TIGR01425 SRP54_euk signal rec 98.0 1.8E-05 4.6E-10 51.4 6.0 146 3-195 118-274 (453)
111 TIGR00379 cobB cobyrinic acid 97.9 3.3E-05 8.5E-10 49.9 6.7 174 9-225 2-187 (464)
112 COG1341 Predicted GTPase or GT 97.9 9.7E-05 2.5E-09 47.2 8.3 40 8-48 75-115 (398)
113 KOG1533 consensus 97.8 1.3E-05 3.2E-10 52.3 2.8 105 14-140 9-113 (290)
114 TIGR00455 apsK adenylylsulfate 97.7 3.3E-05 8.4E-10 49.9 4.0 57 8-65 21-78 (187)
115 PRK00007 elongation factor G; 97.6 0.00029 7.5E-09 44.3 7.5 89 123-219 75-166 (693)
116 PRK07667 uridine kinase; Provi 97.4 0.00036 9.1E-09 43.9 5.2 44 1-45 7-52 (190)
117 pfam07755 DUF1611 Protein of u 97.4 0.0019 4.8E-08 39.7 8.8 170 5-220 112-296 (302)
118 COG0529 CysC Adenylylsulfate k 97.2 0.00039 9.9E-09 43.7 4.2 60 3-63 20-80 (197)
119 cd03116 MobB Molybdenum is an 97.1 0.00095 2.4E-08 41.4 5.3 41 6-47 1-41 (159)
120 pfam00009 GTP_EFTU Elongation 97.1 0.0012 3.1E-08 40.8 5.8 79 122-207 65-146 (185)
121 KOG1534 consensus 97.1 0.00068 1.7E-08 42.2 4.5 107 10-139 6-113 (273)
122 COG1492 CobQ Cobyric acid synt 97.1 0.0014 3.6E-08 40.4 5.7 203 8-225 3-231 (486)
123 TIGR02237 recomb_radB DNA repa 97.1 0.0013 3.4E-08 40.5 5.6 43 6-50 11-53 (223)
124 PRK05541 adenylylsulfate kinas 97.1 0.0015 3.7E-08 40.3 5.8 43 3-46 4-46 (176)
125 pfam03205 MobB Molybdopterin g 97.0 0.0021 5.3E-08 39.4 6.3 41 8-49 2-44 (122)
126 TIGR00347 bioD dethiobiotin sy 97.0 0.0025 6.3E-08 39.0 6.5 28 16-43 7-34 (187)
127 PRK12740 elongation factor G; 96.9 0.00084 2.2E-08 41.7 3.0 91 122-219 58-150 (670)
128 PRK03846 adenylylsulfate kinas 96.8 0.0022 5.6E-08 39.3 5.0 54 3-57 21-75 (198)
129 PRK00652 lpxK tetraacyldisacch 96.8 0.0022 5.5E-08 39.3 4.9 40 5-44 48-88 (334)
130 pfam01583 APS_kinase Adenylyls 96.8 0.0025 6.4E-08 38.9 5.1 52 5-57 1-53 (157)
131 PRK06696 uridine kinase; Valid 96.8 0.0031 7.8E-08 38.4 5.5 37 8-45 28-64 (227)
132 PRK13351 elongation factor G; 96.8 0.001 2.7E-08 41.1 3.1 90 123-219 72-163 (687)
133 PRK08533 flagellar accessory p 96.8 0.0035 8.9E-08 38.1 5.7 100 9-131 26-125 (230)
134 COG0480 FusA Translation elong 96.8 0.002 5E-08 39.5 4.3 84 123-213 75-160 (697)
135 TIGR00176 mobB molybdopterin-g 96.8 0.0018 4.5E-08 39.8 4.1 39 8-47 1-39 (165)
136 PRK00313 lpxK tetraacyldisacch 96.7 0.0024 6.2E-08 39.0 4.6 39 6-44 51-90 (332)
137 PRK10751 molybdopterin-guanine 96.7 0.0034 8.6E-08 38.2 5.2 40 7-47 3-42 (170)
138 PRK00889 adenylylsulfate kinas 96.7 0.0046 1.2E-07 37.4 5.7 54 4-58 2-56 (175)
139 pfam02606 LpxK Tetraacyldisacc 96.6 0.0031 7.8E-08 38.4 4.6 39 5-43 34-73 (318)
140 cd01125 repA Hexameric Replica 96.6 0.036 9.2E-07 32.1 9.9 26 8-33 2-27 (239)
141 PRK05506 bifunctional sulfate 96.6 0.0024 6.1E-08 39.0 3.9 79 122-208 85-166 (613)
142 TIGR02640 gas_vesic_GvpN gas v 96.5 0.0052 1.3E-07 37.0 5.2 31 14-47 28-58 (265)
143 PRK07560 elongation factor EF- 96.5 0.0033 8.4E-08 38.2 4.1 63 124-194 87-152 (730)
144 PRK09361 radB DNA repair and r 96.5 0.0068 1.7E-07 36.4 5.5 38 7-44 23-60 (224)
145 PRK01906 tetraacyldisaccharide 96.5 0.0045 1.2E-07 37.4 4.5 39 5-43 55-94 (339)
146 PRK05480 uridine kinase; Provi 96.5 0.0074 1.9E-07 36.2 5.6 41 1-44 1-41 (209)
147 PRK05537 bifunctional sulfate 96.4 0.0043 1.1E-07 37.5 3.8 58 3-61 389-448 (568)
148 cd02027 APSK Adenosine 5'-phos 96.4 0.0057 1.5E-07 36.8 4.4 36 11-46 3-38 (149)
149 cd00984 DnaB_C DnaB helicase C 96.3 0.01 2.6E-07 35.3 5.6 37 8-44 14-51 (242)
150 cd02028 UMPK_like Uridine mono 96.3 0.0083 2.1E-07 35.9 5.1 37 8-45 1-37 (179)
151 PRK12739 elongation factor G; 96.3 0.0034 8.7E-08 38.1 3.1 90 123-219 74-165 (693)
152 cd01394 radB RadB. The archaea 96.3 0.0096 2.4E-07 35.5 5.3 37 8-44 20-56 (218)
153 COG3367 Uncharacterized conser 96.2 0.043 1.1E-06 31.7 8.4 178 3-225 145-331 (339)
154 PRK00089 era GTP-binding prote 96.2 0.035 8.9E-07 32.2 7.8 38 2-46 4-41 (296)
155 TIGR01618 phage_P_loop phage n 96.2 0.0033 8.5E-08 38.2 2.6 106 8-164 15-124 (229)
156 pfam03796 DnaB_C DnaB-like hel 96.2 0.01 2.6E-07 35.4 5.0 36 9-44 21-57 (186)
157 cd01890 LepA LepA subfamily. 96.1 0.0057 1.5E-07 36.8 3.5 84 123-213 66-151 (179)
158 KOG2749 consensus 96.1 0.017 4.4E-07 34.0 5.8 45 5-50 102-147 (415)
159 PRK12377 putative replication 96.1 0.012 3E-07 35.0 4.9 33 11-43 105-137 (248)
160 COG1763 MobB Molybdopterin-gua 96.1 0.011 2.9E-07 35.1 4.7 40 6-46 2-41 (161)
161 pfam02572 CobA_CobO_BtuR ATP:c 96.0 0.013 3.3E-07 34.8 4.8 38 4-43 2-39 (172)
162 COG2874 FlaH Predicted ATPases 95.9 0.035 8.9E-07 32.2 6.8 107 9-139 30-136 (235)
163 TIGR01166 cbiO cobalt ABC tran 95.9 0.046 1.2E-06 31.5 7.4 158 1-177 13-177 (190)
164 cd01891 TypA_BipA TypA (tyrosi 95.9 0.0067 1.7E-07 36.4 3.0 80 123-209 64-145 (194)
165 cd01122 GP4d_helicase GP4d_hel 95.9 0.022 5.5E-07 33.5 5.6 39 5-44 29-68 (271)
166 PRK06526 transposase; Provisio 95.9 0.017 4.5E-07 34.0 5.1 32 13-44 104-135 (254)
167 COG1663 LpxK Tetraacyldisaccha 95.9 0.0093 2.4E-07 35.6 3.7 42 6-47 47-89 (336)
168 PRK06749 replicative DNA helic 95.9 0.027 6.8E-07 32.9 5.9 40 5-45 185-224 (428)
169 cd02023 UMPK Uridine monophosp 95.8 0.018 4.6E-07 33.9 4.9 35 8-45 1-35 (198)
170 COG1484 DnaC DNA replication p 95.8 0.018 4.7E-07 33.9 4.9 37 6-43 105-141 (254)
171 PRK09302 circadian clock prote 95.8 0.02 5.1E-07 33.6 5.1 38 6-44 24-62 (501)
172 cd01124 KaiC KaiC is a circadi 95.8 0.019 4.9E-07 33.7 4.9 35 10-44 2-36 (187)
173 TIGR01394 TypA_BipA GTP-bindin 95.7 0.0061 1.6E-07 36.6 2.2 126 124-258 70-201 (609)
174 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.021 5.2E-07 33.6 4.7 37 5-43 2-38 (159)
175 TIGR03600 phage_DnaB phage rep 95.7 0.028 7E-07 32.8 5.3 40 5-45 193-233 (421)
176 TIGR01054 rgy reverse gyrase; 95.6 0.013 3.4E-07 34.7 3.5 35 7-42 100-135 (1843)
177 PRK08181 transposase; Validate 95.6 0.025 6.4E-07 33.1 4.9 32 13-44 112-143 (269)
178 PRK06547 hypothetical protein; 95.6 0.022 5.6E-07 33.4 4.5 37 3-44 12-48 (184)
179 pfam00485 PRK Phosphoribulokin 95.6 0.012 2.9E-07 35.0 3.1 36 8-44 1-36 (196)
180 PRK09183 transposase/IS protei 95.5 0.026 6.6E-07 33.0 4.8 31 13-43 107-137 (258)
181 PRK05595 replicative DNA helic 95.5 0.038 9.6E-07 32.0 5.6 40 5-45 200-240 (444)
182 PRK07952 DNA replication prote 95.5 0.025 6.4E-07 33.1 4.7 33 11-43 100-132 (242)
183 COG1159 Era GTPase [General fu 95.5 0.092 2.3E-06 29.8 7.5 40 1-47 1-40 (298)
184 PRK05748 replicative DNA helic 95.5 0.04 1E-06 31.9 5.6 40 5-45 202-242 (448)
185 PRK08506 replicative DNA helic 95.5 0.042 1.1E-06 31.8 5.7 40 5-45 192-231 (473)
186 cd01120 RecA-like_NTPases RecA 95.5 0.03 7.7E-07 32.6 4.9 35 11-45 3-37 (165)
187 PRK07004 replicative DNA helic 95.4 0.036 9.1E-07 32.2 5.2 40 5-45 212-252 (460)
188 TIGR01393 lepA GTP-binding pro 95.4 0.014 3.6E-07 34.5 3.0 85 122-213 69-155 (598)
189 pfam00154 RecA recA bacterial 95.4 0.025 6.4E-07 33.1 4.3 53 5-58 51-105 (322)
190 pfam00931 NB-ARC NB-ARC domain 95.3 0.02 5.2E-07 33.6 3.7 26 3-29 16-41 (285)
191 PRK05433 GTP-binding protein L 95.2 0.019 4.9E-07 33.7 3.4 82 123-211 73-156 (601)
192 PRK13506 formate--tetrahydrofo 95.2 0.033 8.4E-07 32.4 4.5 40 3-42 51-93 (577)
193 pfam01695 IstB IstB-like ATP b 95.2 0.044 1.1E-06 31.7 5.2 36 7-43 48-83 (178)
194 PRK04328 hypothetical protein; 95.2 0.046 1.2E-06 31.6 5.2 36 9-44 26-61 (250)
195 COG3598 RepA RecA-family ATPas 95.2 0.038 9.7E-07 32.0 4.8 36 8-43 90-135 (402)
196 PRK07263 consensus 95.2 0.059 1.5E-06 30.9 5.7 40 5-45 202-242 (453)
197 TIGR03172 probable selenium-de 95.0 0.038 9.8E-07 32.0 4.4 31 8-41 1-31 (232)
198 PRK07414 cob(I)yrinic acid a,c 95.0 0.058 1.5E-06 30.9 5.3 37 5-43 21-57 (178)
199 PRK08082 consensus 95.0 0.065 1.7E-06 30.7 5.5 40 5-45 202-242 (453)
200 PRK05636 replicative DNA helic 95.0 0.069 1.8E-06 30.5 5.6 40 5-45 266-306 (507)
201 COG0467 RAD55 RecA-superfamily 95.0 0.064 1.6E-06 30.7 5.4 40 5-45 22-61 (260)
202 COG0523 Putative GTPases (G3E 95.0 0.26 6.7E-06 27.1 8.5 34 9-44 3-36 (323)
203 COG2403 Predicted GTPase [Gene 94.9 0.05 1.3E-06 31.3 4.7 37 7-43 127-163 (449)
204 cd00983 recA RecA is a bacter 94.9 0.078 2E-06 30.2 5.7 53 5-58 54-108 (325)
205 TIGR01085 murE UDP-N-acetylmur 94.9 0.056 1.4E-06 31.0 5.0 39 2-43 84-122 (494)
206 PRK13505 formate--tetrahydrofo 94.9 0.044 1.1E-06 31.6 4.4 51 3-55 51-104 (556)
207 PRK04308 murD UDP-N-acetylmura 94.9 0.054 1.4E-06 31.1 4.8 38 2-42 106-143 (445)
208 cd00477 FTHFS Formyltetrahydro 94.8 0.045 1.2E-06 31.6 4.3 40 3-42 35-77 (524)
209 PRK08939 primosomal protein Dn 94.8 0.096 2.4E-06 29.7 5.9 37 6-43 157-193 (306)
210 pfam01268 FTHFS Formate--tetra 94.7 0.04 1E-06 31.9 3.9 40 3-42 51-93 (555)
211 PRK08694 consensus 94.7 0.077 2E-06 30.2 5.2 40 5-45 217-257 (468)
212 PRK08840 replicative DNA helic 94.7 0.087 2.2E-06 29.9 5.5 40 5-45 216-256 (464)
213 PRK09270 frcK putative fructos 94.7 0.11 2.9E-06 29.2 6.1 38 7-45 35-74 (230)
214 KOG0635 consensus 94.6 0.083 2.1E-06 30.0 5.2 55 5-60 30-85 (207)
215 PRK13507 formate--tetrahydrofo 94.6 0.054 1.4E-06 31.1 4.3 40 3-42 60-102 (587)
216 PRK09401 reverse gyrase; Revie 94.6 0.045 1.1E-06 31.6 3.8 36 6-42 93-128 (1176)
217 PRK10218 GTP-binding protein; 94.5 0.029 7.5E-07 32.7 2.7 81 122-209 66-148 (607)
218 PRK06067 flagellar accessory p 94.5 0.095 2.4E-06 29.7 5.3 36 9-44 34-69 (241)
219 COG0468 RecA RecA/RadA recombi 94.5 0.096 2.4E-06 29.7 5.3 38 6-44 60-97 (279)
220 PRK09165 replicative DNA helic 94.4 0.12 3.1E-06 29.0 5.8 40 5-45 204-258 (484)
221 smart00382 AAA ATPases associa 94.4 0.066 1.7E-06 30.6 4.3 39 7-46 3-41 (148)
222 TIGR02928 TIGR02928 orc1/cdc6 94.4 0.11 2.7E-06 29.4 5.4 36 11-46 47-87 (383)
223 PRK08116 hypothetical protein; 94.3 0.081 2.1E-06 30.1 4.7 33 11-43 112-144 (262)
224 PRK08760 replicative DNA helic 94.1 0.14 3.6E-06 28.7 5.6 40 5-45 228-268 (476)
225 COG4988 CydD ABC-type transpor 94.1 0.018 4.5E-07 34.0 0.9 31 4-35 345-376 (559)
226 PRK11174 cysteine/glutathione 94.1 0.036 9.1E-07 32.2 2.4 37 4-43 374-410 (588)
227 cd01393 recA_like RecA is a b 94.1 0.12 3.1E-06 29.1 5.1 37 8-44 20-62 (226)
228 PRK04690 murD UDP-N-acetylmura 94.0 0.14 3.5E-06 28.8 5.3 35 5-42 114-148 (468)
229 KOG0462 consensus 94.0 0.064 1.6E-06 30.7 3.6 84 123-213 124-209 (650)
230 PRK08006 replicative DNA helic 94.0 0.17 4.4E-06 28.2 5.7 40 5-45 223-263 (471)
231 cd00881 GTP_translation_factor 93.9 0.033 8.4E-07 32.4 1.9 82 123-211 61-145 (189)
232 PRK04220 2-phosphoglycerate ki 93.9 0.081 2.1E-06 30.1 3.9 26 7-32 92-117 (306)
233 PRK08233 hypothetical protein; 93.9 0.14 3.6E-06 28.7 5.1 37 4-43 1-37 (182)
234 TIGR03574 selen_PSTK L-seryl-t 93.8 0.11 2.9E-06 29.2 4.6 36 10-45 2-37 (249)
235 PTZ00301 uridine kinase; Provi 93.8 0.21 5.5E-06 27.6 5.9 40 5-45 2-43 (210)
236 PRK09354 recA recombinase A; P 93.8 0.21 5.3E-06 27.7 5.8 51 5-58 59-113 (350)
237 pfam08433 KTI12 Chromatin asso 93.8 0.11 2.9E-06 29.3 4.4 36 10-45 2-37 (266)
238 pfam01935 DUF87 Domain of unkn 93.6 0.13 3.3E-06 28.9 4.5 40 6-48 23-63 (218)
239 PRK01390 murD UDP-N-acetylmura 93.6 0.18 4.7E-06 28.0 5.3 34 5-41 113-146 (457)
240 cd01889 SelB_euk SelB subfamil 93.6 0.069 1.8E-06 30.5 3.1 81 122-209 66-149 (192)
241 PRK05973 replicative DNA helic 93.5 0.2 5E-06 27.9 5.3 36 10-45 67-102 (237)
242 PRK11545 gntK gluconate kinase 93.4 0.088 2.2E-06 29.9 3.4 36 3-44 5-40 (177)
243 PRK06321 replicative DNA helic 93.4 0.22 5.7E-06 27.5 5.5 40 5-45 225-265 (472)
244 pfam06745 KaiC KaiC. This fami 93.3 0.2 5.2E-06 27.8 5.2 36 9-44 21-57 (231)
245 PRK00139 murE UDP-N-acetylmura 93.2 0.15 3.8E-06 28.6 4.3 38 3-43 97-134 (481)
246 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.27 6.8E-06 27.1 5.6 39 7-45 19-63 (235)
247 COG1110 Reverse gyrase [DNA re 93.2 0.18 4.6E-06 28.1 4.8 37 5-42 96-132 (1187)
248 pfam00071 Ras Ras family. Incl 93.2 0.23 5.8E-06 27.5 5.3 109 124-255 48-161 (162)
249 PRK07261 topology modulation p 93.2 0.17 4.2E-06 28.3 4.5 32 7-43 2-33 (171)
250 PRK06904 replicative DNA helic 93.1 0.23 5.9E-06 27.4 5.2 40 5-45 220-260 (472)
251 cd01866 Rab2 Rab2 subfamily. 93.1 0.4 1E-05 26.1 6.4 111 124-257 53-168 (168)
252 pfam04851 ResIII Type III rest 93.1 0.23 5.9E-06 27.4 5.1 34 6-41 19-52 (103)
253 PRK02006 murD UDP-N-acetylmura 93.0 0.24 6.1E-06 27.4 5.1 34 5-41 121-154 (501)
254 cd01121 Sms Sms (bacterial rad 93.0 0.24 6E-06 27.4 5.1 35 10-44 85-119 (372)
255 PRK03333 coaE dephospho-CoA ki 92.9 0.28 7.2E-06 26.9 5.4 31 8-45 3-33 (394)
256 PRK06835 DNA replication prote 92.9 0.2 5.2E-06 27.8 4.7 30 14-43 190-219 (330)
257 PRK03803 murD UDP-N-acetylmura 92.9 0.21 5.3E-06 27.7 4.7 35 4-41 107-141 (448)
258 PRK08118 topology modulation p 92.9 0.18 4.5E-06 28.1 4.3 32 7-42 2-33 (167)
259 PRK03369 murD UDP-N-acetylmura 92.8 0.27 6.9E-06 27.0 5.2 35 5-42 116-150 (487)
260 KOG1805 consensus 92.8 0.12 3E-06 29.2 3.3 34 10-43 688-721 (1100)
261 pfam02223 Thymidylate_kin Thym 92.8 0.16 4E-06 28.4 3.9 30 16-46 5-34 (186)
262 cd00009 AAA The AAA+ (ATPases 92.7 0.2 5E-06 27.8 4.4 38 6-44 19-56 (151)
263 PRK01710 murD UDP-N-acetylmura 92.7 0.24 6.1E-06 27.4 4.8 35 4-41 115-149 (458)
264 COG0857 Pta BioD-like N-termin 92.7 0.28 7E-06 27.0 5.1 37 6-42 2-38 (354)
265 cd02025 PanK Pantothenate kina 92.7 0.27 6.8E-06 27.1 5.0 37 8-45 1-39 (220)
266 COG4240 Predicted kinase [Gene 92.7 0.23 5.8E-06 27.5 4.7 37 8-44 51-88 (300)
267 COG0572 Udk Uridine kinase [Nu 92.7 0.24 6.2E-06 27.3 4.8 38 5-45 7-44 (218)
268 PRK03806 murD UDP-N-acetylmura 92.6 0.26 6.5E-06 27.2 4.9 36 3-41 102-137 (438)
269 KOG4658 consensus 92.6 0.13 3.4E-06 28.9 3.3 25 7-32 180-204 (889)
270 PRK06278 cobyrinic acid a,c-di 92.5 0.77 2E-05 24.4 8.9 168 5-215 243-421 (482)
271 TIGR01313 therm_gnt_kin carboh 92.5 0.081 2.1E-06 30.1 2.2 39 14-52 5-46 (175)
272 COG1072 CoaA Panthothenate kin 92.5 0.41 1E-05 26.0 5.8 43 3-45 78-122 (283)
273 TIGR00437 feoB ferrous iron tr 92.5 0.063 1.6E-06 30.7 1.6 85 124-217 41-137 (733)
274 PRK00698 tmk thymidylate kinas 92.4 0.47 1.2E-05 25.7 6.0 37 5-42 2-38 (204)
275 PRK00683 murD UDP-N-acetylmura 92.3 0.19 4.9E-06 27.9 3.9 35 4-41 100-134 (418)
276 PRK13764 ATPase; Provisional 92.3 0.19 4.9E-06 27.9 3.8 39 4-43 257-295 (605)
277 PRK04663 murD UDP-N-acetylmura 92.2 0.29 7.4E-06 26.8 4.7 35 4-41 106-140 (438)
278 cd04144 Ras2 Ras2 subfamily. 92.2 0.54 1.4E-05 25.3 6.1 111 128-258 51-166 (190)
279 COG1618 Predicted nucleotide k 92.1 0.36 9.1E-06 26.4 5.1 39 4-43 3-41 (179)
280 cd01887 IF2_eIF5B IF2/eIF5B (i 92.0 0.11 2.9E-06 29.2 2.5 78 123-207 49-128 (168)
281 pfam05729 NACHT NACHT domain. 92.0 0.2 5E-06 27.8 3.7 26 7-33 1-26 (165)
282 cd04111 Rab39 Rab39 subfamily. 91.9 0.91 2.3E-05 24.0 7.9 112 128-261 56-172 (211)
283 cd01885 EF2 EF2 (for archaea a 91.9 0.068 1.7E-06 30.6 1.1 64 123-193 72-137 (222)
284 cd02029 PRK_like Phosphoribulo 91.8 0.35 8.9E-06 26.4 4.7 37 8-45 1-37 (277)
285 PRK12339 2-phosphoglycerate ki 91.7 0.2 5.2E-06 27.8 3.4 25 6-31 3-27 (197)
286 cd01672 TMPK Thymidine monopho 91.6 0.48 1.2E-05 25.6 5.2 34 9-43 3-36 (200)
287 PRK01438 murD UDP-N-acetylmura 91.6 0.43 1.1E-05 25.9 5.0 35 4-41 120-154 (481)
288 PRK01368 murD UDP-N-acetylmura 91.5 0.42 1.1E-05 25.9 4.9 35 4-41 102-136 (450)
289 COG4088 Predicted nucleotide k 91.5 0.23 5.7E-06 27.5 3.5 37 9-45 3-39 (261)
290 PRK06217 hypothetical protein; 91.5 0.27 7E-06 27.0 3.9 31 8-44 3-33 (185)
291 PRK13721 conjugal transfer ATP 91.5 0.44 1.1E-05 25.8 4.9 34 11-44 478-511 (864)
292 cd01883 EF1_alpha Eukaryotic e 91.5 0.12 3E-06 29.2 2.0 70 122-194 75-150 (219)
293 PRK02472 murD UDP-N-acetylmura 91.4 0.36 9.2E-06 26.3 4.5 35 4-41 110-144 (450)
294 TIGR00041 DTMP_kinase thymidyl 91.4 0.22 5.6E-06 27.6 3.4 28 14-41 9-37 (211)
295 cd04166 CysN_ATPS CysN_ATPS su 91.4 0.18 4.6E-06 28.1 2.9 66 122-193 75-142 (208)
296 PRK09554 feoB ferrous iron tra 91.3 0.11 2.9E-06 29.2 1.9 20 8-28 5-24 (772)
297 TIGR01082 murC UDP-N-acetylmur 91.3 0.29 7.5E-06 26.8 3.9 40 1-44 104-144 (491)
298 cd04167 Snu114p Snu114p subfam 91.3 0.095 2.4E-06 29.7 1.4 63 124-193 71-135 (213)
299 COG2759 MIS1 Formyltetrahydrof 91.2 0.18 4.5E-06 28.1 2.7 51 3-55 49-102 (554)
300 PRK07933 thymidylate kinase; V 91.0 0.32 8.2E-06 26.6 3.9 34 9-43 3-36 (213)
301 PRK05986 cob(I)yrinic acid a,c 91.0 0.24 6.2E-06 27.3 3.3 39 3-43 20-58 (190)
302 TIGR00763 lon ATP-dependent pr 91.0 0.27 6.8E-06 27.1 3.5 88 3-92 446-586 (941)
303 COG1120 FepC ABC-type cobalami 91.0 0.25 6.5E-06 27.2 3.4 38 4-43 26-63 (258)
304 PRK13973 thymidylate kinase; P 91.0 0.74 1.9E-05 24.5 5.7 39 5-45 2-40 (216)
305 cd04122 Rab14 Rab14 subfamily. 91.0 1.1 2.9E-05 23.4 6.7 109 125-256 52-165 (166)
306 PRK05876 short chain dehydroge 90.9 0.34 8.6E-06 26.5 3.9 41 1-46 1-41 (275)
307 COG0771 MurD UDP-N-acetylmuram 90.9 0.47 1.2E-05 25.7 4.7 33 5-40 109-141 (448)
308 PRK06194 hypothetical protein; 90.9 0.35 8.9E-06 26.4 4.0 41 1-46 1-41 (301)
309 TIGR02475 CobW cobalamin biosy 90.9 0.2 5E-06 27.9 2.7 31 9-42 6-37 (349)
310 PRK09825 idnK D-gluconate kina 90.8 0.26 6.6E-06 27.2 3.3 34 5-44 2-35 (176)
311 PRK02705 murD UDP-N-acetylmura 90.8 0.44 1.1E-05 25.8 4.4 35 4-41 107-141 (459)
312 cd01897 NOG NOG1 is a nucleola 90.8 0.16 4.2E-06 28.3 2.2 28 8-42 2-29 (168)
313 PRK00141 murD UDP-N-acetylmura 90.7 0.59 1.5E-05 25.1 5.0 34 5-41 122-155 (476)
314 TIGR02173 cyt_kin_arch cytidyl 90.7 0.21 5.3E-06 27.7 2.7 25 9-33 2-26 (173)
315 COG3973 Superfamily I DNA and 90.7 0.42 1.1E-05 25.9 4.3 36 7-42 226-267 (747)
316 cd04141 Rit_Rin_Ric Rit/Rin/Ri 90.7 0.94 2.4E-05 23.9 6.0 112 125-258 51-167 (172)
317 pfam02562 PhoH PhoH-like prote 90.4 0.58 1.5E-05 25.1 4.8 35 8-42 20-56 (205)
318 TIGR02770 nickel_nikD nickel i 90.4 0.29 7.4E-06 26.9 3.2 27 4-31 10-36 (239)
319 cd01867 Rab8_Rab10_Rab13_like 90.4 1.1 2.7E-05 23.6 6.1 110 125-257 53-167 (167)
320 PRK12297 obgE GTPase ObgE; Rev 90.3 0.31 8E-06 26.7 3.3 85 122-210 204-301 (429)
321 PRK12299 obgE GTPase ObgE; Rev 90.3 0.44 1.1E-05 25.8 4.1 86 123-210 205-301 (334)
322 pfam05970 DUF889 PIF1 helicase 90.3 0.46 1.2E-05 25.7 4.1 28 14-41 1-28 (418)
323 PRK12298 obgE GTPase ObgE; Rev 90.3 0.29 7.3E-06 26.9 3.1 87 123-211 206-306 (380)
324 pfam00437 GSPII_E Type II/IV s 90.2 0.35 8.9E-06 26.4 3.4 43 210-252 210-255 (283)
325 cd01888 eIF2_gamma eIF2-gamma 90.1 0.27 6.8E-06 27.1 2.8 81 124-209 83-166 (203)
326 COG0125 Tmk Thymidylate kinase 90.0 0.97 2.5E-05 23.8 5.7 38 5-43 2-39 (208)
327 cd04109 Rab28 Rab28 subfamily. 89.9 0.82 2.1E-05 24.2 5.2 113 126-258 52-169 (215)
328 PRK06398 aldose dehydrogenase; 89.9 0.52 1.3E-05 25.4 4.2 41 1-46 1-41 (256)
329 PRK13695 putative NTPase; Prov 89.8 0.68 1.7E-05 24.7 4.7 30 9-38 5-34 (174)
330 cd04121 Rab40 Rab40 subfamily. 89.8 0.93 2.4E-05 23.9 5.4 110 125-258 56-170 (189)
331 cd04112 Rab26 Rab26 subfamily. 89.8 1.4 3.5E-05 22.9 6.3 109 125-258 51-166 (191)
332 TIGR02012 tigrfam_recA protein 89.8 1 2.6E-05 23.6 5.6 39 5-44 54-92 (322)
333 COG0305 DnaB Replicative DNA h 89.7 0.92 2.3E-05 24.0 5.3 39 5-44 195-234 (435)
334 PRK12338 hypothetical protein; 89.7 0.38 9.7E-06 26.2 3.4 36 4-44 2-37 (320)
335 KOG2004 consensus 89.7 0.25 6.5E-06 27.2 2.5 30 3-33 435-464 (906)
336 cd04140 ARHI_like ARHI subfami 89.7 0.67 1.7E-05 24.7 4.6 68 125-193 50-120 (165)
337 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 89.7 1.5 3.8E-05 22.7 6.9 110 124-256 51-165 (166)
338 COG3903 Predicted ATPase [Gene 89.6 0.41 1.1E-05 26.0 3.5 44 8-52 15-59 (414)
339 COG4108 PrfC Peptide chain rel 89.6 0.41 1E-05 26.0 3.4 91 127-225 84-179 (528)
340 cd01898 Obg Obg subfamily. Th 89.5 0.39 1E-05 26.1 3.3 27 9-42 3-29 (170)
341 pfam03266 DUF265 Protein of un 89.4 0.55 1.4E-05 25.2 4.0 28 11-38 3-30 (168)
342 COG3451 VirB4 Type IV secretor 89.3 0.84 2.1E-05 24.2 4.9 46 10-55 439-486 (796)
343 TIGR00503 prfC peptide chain r 89.3 0.35 8.8E-06 26.4 2.9 103 128-238 84-192 (530)
344 PRK09519 recA recombinase A; R 89.2 1.2 3.1E-05 23.2 5.7 39 5-44 59-97 (790)
345 PRK06761 hypothetical protein; 89.2 0.94 2.4E-05 23.9 5.1 39 6-45 2-41 (281)
346 PRK13898 type IV secretion sys 89.2 0.96 2.4E-05 23.8 5.1 32 14-45 453-484 (800)
347 PRK05124 cysN sulfate adenylyl 89.1 0.34 8.8E-06 26.4 2.8 79 122-208 105-186 (475)
348 TIGR01087 murD UDP-N-acetylmur 89.1 0.92 2.3E-05 23.9 4.9 33 5-40 109-141 (476)
349 cd02022 DPCK Dephospho-coenzym 89.0 0.56 1.4E-05 25.2 3.8 31 8-45 1-31 (179)
350 TIGR00682 lpxK tetraacyldisacc 89.0 0.65 1.6E-05 24.8 4.1 40 5-44 31-71 (342)
351 TIGR01137 cysta_beta cystathio 89.0 0.77 2E-05 24.4 4.5 112 24-162 193-316 (527)
352 COG0481 LepA Membrane GTPase L 88.9 0.45 1.1E-05 25.8 3.2 22 114-135 354-375 (603)
353 COG1102 Cmk Cytidylate kinase 88.9 0.42 1.1E-05 25.9 3.1 28 8-39 2-29 (179)
354 pfam02492 cobW CobW/HypB/UreG, 88.9 0.8 2.1E-05 24.3 4.5 36 9-45 2-37 (174)
355 PRK07429 phosphoribulokinase; 88.9 1.1 2.9E-05 23.4 5.3 38 5-45 7-44 (331)
356 PRK04195 replication factor C 88.8 0.9 2.3E-05 24.0 4.7 32 9-43 42-73 (403)
357 smart00175 RAB Rab subfamily o 88.7 1.5 4E-05 22.6 5.9 110 125-257 50-164 (164)
358 PRK03839 putative kinase; Prov 88.7 0.8 2E-05 24.3 4.4 28 8-39 2-29 (180)
359 pfam07726 AAA_3 ATPase family 88.7 1 2.6E-05 23.7 5.0 32 12-46 4-35 (131)
360 KOG1969 consensus 88.6 0.84 2.1E-05 24.2 4.5 37 4-43 323-359 (877)
361 TIGR00631 uvrb excinuclease AB 88.5 0.45 1.1E-05 25.8 3.0 26 14-42 36-61 (667)
362 cd01862 Rab7 Rab7 subfamily. 88.5 1.7 4.4E-05 22.3 6.0 116 125-260 50-172 (172)
363 pfam06418 CTP_synth_N CTP synt 88.5 1.4 3.5E-05 23.0 5.5 45 6-50 1-46 (275)
364 PRK09112 DNA polymerase III su 88.5 0.54 1.4E-05 25.3 3.4 22 12-33 50-71 (352)
365 cd04139 RalA_RalB RalA/RalB su 88.5 1.6 4E-05 22.6 5.8 112 124-257 48-164 (164)
366 COG5623 CLP1 Predicted GTPase 88.4 0.97 2.5E-05 23.8 4.7 40 6-46 99-138 (424)
367 PRK11929 putative bifunctional 88.3 1.5 3.9E-05 22.7 5.6 39 2-43 107-145 (953)
368 TIGR00337 PyrG CTP synthase; I 88.2 1.4 3.5E-05 22.9 5.3 47 4-50 2-49 (571)
369 cd00755 YgdL_like Family of ac 88.2 0.57 1.5E-05 25.2 3.4 36 4-46 10-46 (231)
370 cd04163 Era Era subfamily. Er 88.2 0.29 7.4E-06 26.9 1.9 28 7-41 4-31 (168)
371 TIGR02203 MsbA_lipidA lipid A 88.1 0.41 1.1E-05 26.0 2.6 44 4-50 386-430 (603)
372 COG1855 ATPase (PilT family) [ 87.9 0.7 1.8E-05 24.6 3.7 36 5-41 262-297 (604)
373 PRK11331 5-methylcytosine-spec 87.9 0.85 2.2E-05 24.1 4.1 57 3-59 190-249 (459)
374 cd01884 EF_Tu EF-Tu subfamily. 87.9 0.47 1.2E-05 25.7 2.8 67 123-195 64-132 (195)
375 cd04114 Rab30 Rab30 subfamily. 87.9 2 5.1E-05 22.0 6.1 108 125-255 57-169 (169)
376 cd01895 EngA2 EngA2 subfamily. 87.9 0.34 8.8E-06 26.4 2.1 27 8-41 4-30 (174)
377 pfam08423 Rad51 Rad51. Rad51 i 87.8 1.4 3.6E-05 22.9 5.2 40 6-45 42-87 (261)
378 PRK05506 bifunctional sulfate 87.7 0.25 6.4E-06 27.2 1.3 56 4-60 441-497 (613)
379 PRK11823 DNA repair protein Ra 87.6 1.3 3.4E-05 23.0 5.0 35 9-44 92-126 (454)
380 TIGR02632 RhaD_aldol-ADH rhamn 87.6 1.1 2.8E-05 23.5 4.6 38 4-46 422-459 (709)
381 cd04154 Arl2 Arl2 subfamily. 87.6 0.68 1.7E-05 24.7 3.5 25 1-27 10-34 (173)
382 PRK07471 DNA polymerase III su 87.5 1.2 3E-05 23.3 4.6 27 7-34 40-66 (363)
383 cd04123 Rab21 Rab21 subfamily. 87.5 1.1 2.9E-05 23.4 4.5 109 124-255 49-162 (162)
384 cd02026 PRK Phosphoribulokinas 87.4 0.62 1.6E-05 24.9 3.2 35 8-45 1-35 (273)
385 cd01863 Rab18 Rab18 subfamily. 87.4 2.1 5.4E-05 21.8 6.1 107 124-253 49-160 (161)
386 PRK05380 pyrG CTP synthetase; 87.4 1.9 4.8E-05 22.1 5.7 45 6-50 2-47 (534)
387 PRK13873 conjugal transfer ATP 87.3 1.6 4E-05 22.6 5.2 32 14-45 448-480 (815)
388 cd03113 CTGs CTP synthetase (C 87.3 1.4 3.5E-05 22.9 4.9 39 12-50 7-45 (255)
389 PRK12337 2-phosphoglycerate ki 87.3 0.73 1.9E-05 24.5 3.5 25 7-31 262-286 (492)
390 cd01127 TrwB Bacterial conjuga 87.2 1.8 4.5E-05 22.3 5.4 47 5-54 41-87 (410)
391 TIGR00618 sbcc exonuclease Sbc 87.2 0.66 1.7E-05 24.8 3.2 29 8-38 31-59 (1063)
392 TIGR02528 EutP ethanolamine ut 87.1 0.37 9.4E-06 26.3 1.9 37 7-45 1-37 (144)
393 PRK10773 murF UDP-N-acetylmura 87.1 0.85 2.2E-05 24.1 3.7 35 3-40 97-131 (452)
394 TIGR03575 selen_PSTK_euk L-ser 86.9 1.1 2.8E-05 23.5 4.2 37 9-45 1-38 (340)
395 PRK12826 3-ketoacyl-(acyl-carr 86.9 1.1 2.8E-05 23.5 4.2 41 1-46 1-41 (253)
396 TIGR01846 type_I_sec_HlyB type 86.9 0.61 1.6E-05 25.0 2.9 122 4-146 489-615 (703)
397 PTZ00265 multidrug resistance 86.9 1.5 3.8E-05 22.7 4.9 41 4-46 409-451 (1467)
398 cd00154 Rab Rab family. Rab G 86.8 1 2.5E-05 23.7 4.0 65 125-193 50-117 (159)
399 TIGR03420 DnaA_homol_Hda DnaA 86.8 1.3 3.3E-05 23.0 4.5 38 6-44 38-75 (226)
400 COG1428 Deoxynucleoside kinase 86.7 0.92 2.3E-05 23.9 3.7 32 4-39 2-33 (216)
401 cd01868 Rab11_like Rab11-like. 86.6 2.3 6E-05 21.6 5.8 107 125-254 53-164 (165)
402 PRK05872 short chain dehydroge 86.6 1.1 2.7E-05 23.6 4.0 41 1-46 4-44 (296)
403 pfam06414 Zeta_toxin Zeta toxi 86.5 1.5 3.8E-05 22.7 4.7 39 3-44 9-47 (191)
404 PRK07773 replicative DNA helic 86.4 2.2 5.7E-05 21.7 5.6 39 5-44 202-241 (868)
405 PRK13640 cbiO cobalt transport 86.4 0.98 2.5E-05 23.8 3.8 29 4-33 32-60 (283)
406 COG1217 TypA Predicted membran 86.4 0.57 1.5E-05 25.1 2.5 81 122-209 66-148 (603)
407 PRK13644 cbiO cobalt transport 86.2 0.85 2.2E-05 24.1 3.4 35 4-40 26-61 (274)
408 PRK13830 conjugal transfer pro 86.2 1.7 4.3E-05 22.4 4.9 33 13-45 462-495 (818)
409 COG0370 FeoB Fe2+ transport sy 86.2 0.64 1.6E-05 24.8 2.7 32 186-217 113-145 (653)
410 PRK08589 short chain dehydroge 86.1 1.1 2.8E-05 23.5 3.9 41 1-46 1-41 (272)
411 PRK00421 murC UDP-N-acetylmura 85.9 1.3 3.3E-05 23.1 4.1 36 4-42 106-142 (459)
412 COG2074 2-phosphoglycerate kin 85.9 0.85 2.2E-05 24.1 3.2 26 5-31 88-113 (299)
413 cd04127 Rab27A Rab27a subfamil 85.8 2.6 6.6E-05 21.3 6.5 110 125-257 64-179 (180)
414 pfam02421 FeoB_N Ferrous iron 85.8 0.7 1.8E-05 24.6 2.8 19 8-27 1-19 (188)
415 PRK10875 recD exonuclease V su 85.7 2.1 5.3E-05 21.9 5.1 27 7-33 162-188 (607)
416 cd04171 SelB SelB subfamily. 85.7 0.75 1.9E-05 24.5 2.8 80 124-209 51-133 (164)
417 pfam01121 CoaE Dephospho-CoA k 85.6 1.5 4E-05 22.6 4.4 31 8-45 2-32 (179)
418 TIGR02729 Obg_CgtA GTP-binding 85.6 0.5 1.3E-05 25.5 1.9 67 125-193 210-294 (296)
419 COG1066 Sms Predicted ATP-depe 85.5 1.9 4.9E-05 22.1 4.9 34 10-44 96-129 (456)
420 TIGR00073 hypB hydrogenase acc 85.5 0.97 2.5E-05 23.8 3.4 41 8-50 36-76 (225)
421 smart00487 DEXDc DEAD-like hel 85.4 1.8 4.5E-05 22.3 4.6 32 11-42 28-61 (201)
422 COG4962 CpaF Flp pilus assembl 85.3 0.71 1.8E-05 24.6 2.6 16 13-28 179-194 (355)
423 cd02020 CMPK Cytidine monophos 85.3 0.9 2.3E-05 24.0 3.1 23 8-31 1-23 (147)
424 PRK10536 hypothetical protein; 85.3 1.1 2.8E-05 23.5 3.6 30 6-35 73-102 (262)
425 PRK13632 cbiO cobalt transport 85.2 0.87 2.2E-05 24.1 3.0 38 4-43 34-71 (273)
426 PRK06912 acoL dihydrolipoamide 85.1 0.77 2E-05 24.4 2.7 38 6-50 1-38 (458)
427 PRK12829 short chain dehydroge 85.1 1.3 3.4E-05 23.0 3.9 41 1-46 6-46 (264)
428 cd03257 ABC_NikE_OppD_transpor 85.0 1 2.7E-05 23.6 3.3 28 4-32 29-56 (228)
429 PRK08862 short chain dehydroge 85.0 0.94 2.4E-05 23.9 3.1 39 4-47 3-41 (227)
430 cd02021 GntK Gluconate kinase 85.0 0.85 2.2E-05 24.1 2.9 30 11-45 3-32 (150)
431 COG0378 HypB Ni2+-binding GTPa 85.0 2.5 6.5E-05 21.4 5.3 39 7-47 14-52 (202)
432 TIGR02868 CydC ABC transporter 85.0 1 2.7E-05 23.6 3.3 41 4-46 385-426 (566)
433 PRK00300 gmk guanylate kinase; 84.9 1.2 3.1E-05 23.2 3.6 27 1-28 2-28 (208)
434 PRK08324 short chain dehydroge 84.8 2 5.1E-05 21.9 4.7 40 3-47 418-457 (676)
435 COG0194 Gmk Guanylate kinase [ 84.8 1.3 3.3E-05 23.1 3.7 23 5-28 3-25 (191)
436 pfam10412 TrwB_AAD_bind Type I 84.7 2.9 7.4E-05 21.0 6.0 47 3-52 12-58 (386)
437 TIGR02880 cbbX_cfxQ CbbX prote 84.6 1.3 3.2E-05 23.1 3.6 37 7-44 59-99 (284)
438 PRK13648 cbiO cobalt transport 84.6 1.2 3.1E-05 23.2 3.6 27 4-31 33-59 (269)
439 PRK10463 hydrogenase nickel in 84.5 1.3 3.3E-05 23.1 3.6 39 8-48 106-144 (290)
440 pfam08245 Mur_ligase_M Mur lig 84.4 1.5 3.8E-05 22.7 3.9 27 16-42 3-29 (188)
441 PRK05057 aroK shikimate kinase 84.2 1.9 4.9E-05 22.1 4.4 37 1-45 1-37 (172)
442 TIGR02211 LolD_lipo_ex lipopro 84.2 0.76 1.9E-05 24.4 2.4 24 4-28 29-52 (221)
443 cd03290 ABCC_SUR1_N The SUR do 84.2 1.2 3.1E-05 23.2 3.4 36 4-40 25-60 (218)
444 TIGR02746 TraC-F-type type-IV 84.0 2.4 6.2E-05 21.5 4.9 46 9-55 492-538 (900)
445 pfam07693 KAP_NTPase KAP famil 84.0 3.1 8E-05 20.8 6.0 42 4-46 18-59 (301)
446 PRK10789 putative multidrug tr 84.0 2.7 6.8E-05 21.3 5.0 37 4-43 339-376 (569)
447 PRK13394 3-hydroxybutyrate deh 84.0 1.8 4.6E-05 22.3 4.2 40 1-45 2-41 (262)
448 PRK13631 cbiO cobalt transport 84.0 1.3 3.4E-05 23.0 3.5 36 4-40 50-85 (320)
449 cd03291 ABCC_CFTR1 The CFTR su 83.9 1.3 3.3E-05 23.1 3.4 28 4-32 61-88 (282)
450 PRK10846 bifunctional folylpol 83.9 2.5 6.3E-05 21.4 4.8 37 2-41 45-81 (416)
451 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 83.8 1.6 4.2E-05 22.5 3.9 104 143-257 82-190 (232)
452 cd01853 Toc34_like Toc34-like 83.7 0.93 2.4E-05 23.9 2.6 29 8-43 33-61 (249)
453 PRK12296 obgE GTPase ObgE; Rev 83.7 0.87 2.2E-05 24.1 2.5 81 123-207 205-308 (495)
454 PRK13642 cbiO cobalt transport 83.6 1.2 3.2E-05 23.2 3.2 38 4-43 31-68 (277)
455 PRK13645 cbiO cobalt transport 83.6 0.81 2.1E-05 24.3 2.3 35 4-40 35-70 (289)
456 COG3265 GntK Gluconate kinase 83.5 0.49 1.3E-05 25.5 1.1 32 15-51 3-37 (161)
457 PRK12898 secA preprotein trans 83.4 0.52 1.3E-05 25.4 1.2 33 11-43 135-167 (673)
458 COG4167 SapF ABC-type antimicr 83.4 0.93 2.4E-05 23.9 2.5 36 4-40 37-72 (267)
459 cd04155 Arl3 Arl3 subfamily. 83.3 1.6 4E-05 22.6 3.6 25 1-27 10-34 (173)
460 PRK06484 short chain dehydroge 83.3 1.8 4.6E-05 22.2 3.9 40 2-46 1-40 (530)
461 cd03249 ABC_MTABC3_MDL1_MDL2 M 83.3 1.5 3.7E-05 22.8 3.5 37 4-43 27-64 (238)
462 PRK13633 cobalt transporter AT 83.2 1.4 3.7E-05 22.8 3.4 36 4-40 35-70 (281)
463 PRK13650 cbiO cobalt transport 83.2 1.4 3.5E-05 22.9 3.3 37 4-43 28-65 (276)
464 PRK12814 putative NADPH-depend 83.1 2.7 6.9E-05 21.2 4.8 50 2-57 189-238 (652)
465 TIGR03015 pepcterm_ATPase puta 83.1 1.9 4.8E-05 22.1 4.0 42 5-47 41-82 (269)
466 PRK07454 short chain dehydroge 83.0 2 5.1E-05 22.0 4.1 41 1-46 1-41 (241)
467 cd03261 ABC_Org_Solvent_Resist 83.0 1.5 3.9E-05 22.7 3.4 26 4-30 24-49 (235)
468 COG0237 CoaE Dephospho-CoA kin 82.9 2.4 6.2E-05 21.5 4.5 32 6-44 2-33 (201)
469 PRK10787 DNA-binding ATP-depen 82.9 1.3 3.3E-05 23.1 3.1 29 3-32 346-374 (784)
470 COG2274 SunT ABC-type bacterio 82.9 1.5 3.9E-05 22.6 3.5 37 4-43 497-534 (709)
471 cd03248 ABCC_TAP TAP, the Tran 82.8 1.5 3.7E-05 22.8 3.3 37 4-43 38-75 (226)
472 cd03289 ABCC_CFTR2 The CFTR su 82.8 1.3 3.3E-05 23.0 3.1 37 4-43 28-64 (275)
473 TIGR03345 VI_ClpV1 type VI sec 82.8 1.6 4E-05 22.6 3.5 32 13-44 214-252 (852)
474 KOG2859 consensus 82.7 2.2 5.7E-05 21.7 4.3 46 2-48 34-85 (293)
475 COG1100 GTPase SAR1 and relate 82.7 1.3 3.3E-05 23.1 3.0 38 6-45 6-43 (219)
476 PRK13646 cbiO cobalt transport 82.6 1.6 4.1E-05 22.5 3.5 40 4-44 31-70 (286)
477 cd03808 GT1_cap1E_like This fa 82.6 2.4 6E-05 21.5 4.3 35 7-43 1-35 (359)
478 pfam07728 AAA_5 AAA domain (dy 82.5 0.85 2.2E-05 24.1 2.0 33 12-46 4-36 (139)
479 pfam00910 RNA_helicase RNA hel 82.4 1.7 4.2E-05 22.5 3.5 23 12-34 3-25 (105)
480 PRK06500 short chain dehydroge 82.4 1.8 4.7E-05 22.2 3.7 41 1-46 1-41 (249)
481 PRK06172 short chain dehydroge 82.4 1.7 4.4E-05 22.4 3.5 38 4-46 5-42 (253)
482 cd01879 FeoB Ferrous iron tran 82.3 1.1 2.7E-05 23.6 2.4 15 14-28 3-17 (158)
483 PRK13700 conjugal transfer pro 82.3 3.7 9.4E-05 20.4 5.3 40 4-44 183-222 (732)
484 cd04113 Rab4 Rab4 subfamily. 82.2 2.3 6E-05 21.6 4.2 107 125-254 50-161 (161)
485 PRK13651 cobalt transporter AT 82.2 1.4 3.7E-05 22.8 3.1 41 4-45 31-71 (304)
486 COG0770 MurF UDP-N-acetylmuram 82.2 1.9 4.9E-05 22.1 3.7 30 3-35 100-129 (451)
487 cd02024 NRK1 Nicotinamide ribo 82.1 1.8 4.7E-05 22.2 3.6 32 8-44 1-32 (187)
488 PRK06921 hypothetical protein; 82.1 3.3 8.3E-05 20.7 4.9 28 14-41 123-151 (265)
489 cd03288 ABCC_SUR2 The SUR doma 82.1 1.8 4.7E-05 22.2 3.6 36 4-42 45-81 (257)
490 CHL00181 cbbX CbbX; Provisiona 82.0 2.1 5.3E-05 21.9 3.9 29 7-36 60-88 (287)
491 TIGR01966 RNasePH ribonuclease 82.0 0.94 2.4E-05 23.9 2.1 21 28-48 100-121 (237)
492 PRK13853 type IV secretion sys 81.9 3.7 9.4E-05 20.4 5.1 32 14-45 433-468 (789)
493 TIGR02982 heterocyst_DevA ABC 81.9 0.94 2.4E-05 23.9 2.1 21 9-29 33-53 (220)
494 PRK12825 fabG 3-ketoacyl-(acyl 81.9 2.1 5.3E-05 21.9 3.8 40 1-45 2-41 (250)
495 pfam00996 GDI GDP dissociation 81.9 0.75 1.9E-05 24.5 1.5 37 17-55 11-48 (439)
496 cd03112 CobW_like The function 81.8 2 5.2E-05 21.9 3.7 35 9-45 2-36 (158)
497 cd03251 ABCC_MsbA MsbA is an e 81.8 1.8 4.5E-05 22.3 3.4 37 4-43 26-63 (234)
498 PRK13635 cbiO cobalt transport 81.8 1.7 4.4E-05 22.3 3.4 28 4-32 31-58 (279)
499 cd04137 RheB Rheb (Ras Homolog 81.7 2.8 7.2E-05 21.1 4.5 112 124-258 49-166 (180)
500 PRK13643 cbiO cobalt transport 81.7 1.7 4.2E-05 22.4 3.3 24 4-28 30-53 (288)
No 1
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=100.00 E-value=0 Score=358.23 Aligned_cols=254 Identities=25% Similarity=0.402 Sum_probs=209.4
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCC---CCCCCEEEEEE---CCCCHH
Q ss_conf 876874999980889888899999999999987995999987877680112124633---34541167630---257712
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELY---DRKYSSYDLLI---EEKNIN 75 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~---~~~~ti~~~l~---~~~~l~ 75 (265)
+..++|||+|.|+||||||||+|+|||++||.+|+|||+||+|||||+|.+||..+. ....++++.+. ...++.
T Consensus 100 ~g~~~~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvIDLDPQanlT~~~G~~pe~d~~~~~tl~~~l~~d~~~~~l~ 179 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAIDLDPQASLSALFGFQPEFDVGENETLYGAIRYDDERRPLS 179 (387)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHH
T ss_conf 99988089997888765699999999999997799889995370167887528984346675642999984455668799
Q ss_pred HCCCCCCCCCEEECCCCCCCCCCCCCCC----CCCCC----CHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 1024444442000148874577500012----32222----102333224765102782033101333222210112331
Q gi|254780806|r 76 QILIQTAIPNLSIIPSTMDLLGIEMILG----GEKDR----LFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAAD 147 (265)
Q Consensus 76 ~~i~~~~~~~l~iipa~~~~~~~~~~l~----~~~~~----~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad 147 (265)
+++.+|.++|||+|||+..+.+++..+. ..... ..+|++.|. .+.++||||||||||++|.+|.|+|.|||
T Consensus 180 ~~i~~T~~~~LdliPa~~~L~~~E~~~~~~l~~~~~~~~~f~~rL~~aL~-~v~d~YD~IlIDcPPsLg~lT~nAL~AAd 258 (387)
T TIGR03453 180 EIIRKTYFPGLDLIPGNLELMEFEHETPRALSRGAGGDTIFFARVGEALA-EVEDDYDVVVIDCPPQLGFLTLSALCAAT 258 (387)
T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 96114799996896598899998898899997431100269999999999-76602999999589851399999999819
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 00111112311378887533577765543-----2026774310020231253100112689998808520156267868
Q gi|254780806|r 148 SILVPLQCEFFALEGLSQLLETVEEVRRT-----VNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNV 222 (265)
Q Consensus 148 ~viip~~p~~~s~~~~~~~~~~i~~~~~~-----~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~ 222 (265)
.+|||+.|+++++.++.+++.++..+... .+.++++.++++|||++++..+.++.+.+++.||..++.+.||.+.
T Consensus 259 ~vlIPv~p~~ld~~s~~qfl~~~~~l~~~i~~~g~~~~~d~~~~LlT~~d~~~~~~~~v~~~~r~~fg~~vl~~~i~~S~ 338 (387)
T TIGR03453 259 AVLITVHPQMLDVMSMSQFLLMTGDLLGVVRDAGGNLSYDWMRYLVTRYEPNDGPQAQMVAFMRSLFGEHVLTNPMLKST 338 (387)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEHHH
T ss_conf 40878887177799999999999999999997167767640577645178998469999999999850654236201679
Q ss_pred HHHHHHHCCCCEEEECCCCH-------HHHHHHHHHHHHHH
Q ss_conf 89877737985799979998-------99999999999999
Q gi|254780806|r 223 RISEAPSYGKPAIIYDLKCA-------GSQAYLKLASELIQ 256 (265)
Q Consensus 223 ~i~~a~~~g~pv~~~~p~s~-------~a~~~~~la~el~~ 256 (265)
++.+|...+++|+++++... +.+.+.....||.+
T Consensus 339 ai~~A~~~~~TiyE~~~~~~~r~ty~Ra~e~~d~v~~ei~~ 379 (387)
T TIGR03453 339 AISDAGLTKQTLYEVERSQFTRSTYDRAMESLDAVNAEIEG 379 (387)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99863763793598774658989999999999999999999
No 2
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=0 Score=353.74 Aligned_cols=243 Identities=24% Similarity=0.294 Sum_probs=202.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
|||+|+|+||||||||+|+|||++||+.|+||++||+|||++++.+||.++. ...++.+.+....++.+++.+ ..+|+
T Consensus 2 kiIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ~~l~~~~g~~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~ 79 (246)
T TIGR03371 2 KVIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQNLLRLHFGMDWS-VRDGWARALLAGEDWRAAAYR-SSDGV 79 (246)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCC-CCCCHHHHHHCCCCHHHHHEE-CCCCE
T ss_conf 3999975999854999999999999968997899975999850322488875-345699998279988895255-78982
Q ss_pred EECCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 0014887-457750001232222102333224765102782033101333222210112331001111123113788875
Q gi|254780806|r 87 SIIPSTM-DLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQ 165 (265)
Q Consensus 87 ~iipa~~-~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~ 165 (265)
+++|++. .....+..... ...++.+.+...-.+.||||||||||+++.++.++|.+||.+++|++|+++|+.++.+
T Consensus 80 ~~ip~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~~~~D~viiD~pp~l~~~~~~al~aad~vlipv~~~~~s~~~~~~ 156 (246)
T TIGR03371 80 LFLPYGTLSADEREAYQAH---DAGWLARLLQQLDLAARDWVLIDLPRGPSPITDQALAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred EEEECCCCCHHHHHHHCCC---CHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHH
T ss_conf 8970898477789876044---7899999998630367988999489987499999999889479981899899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 33577765543202677431002023125310011268999880852015626786889877737985799979998999
Q gi|254780806|r 166 LLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQ 245 (265)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a~ 245 (265)
++..+..... +....++|+||+++++..++++.+.+++.|+..++.+.||++..+.+|...|+||++|.|+|++++
T Consensus 157 ~~~~~~~~~~----~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~v~eA~~~g~pv~~~~p~S~aa~ 232 (246)
T TIGR03371 157 LALALLARSV----PPDGIHYLINQFQPARQLSRDVRAVLRATLGSRLLPMFVHRDEAVAEALARGTPVFNYAPHSQAAH 232 (246)
T ss_pred HHHHHHHHCC----CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCCHHHH
T ss_conf 9999998427----767517886302640158999999999974988162268997799999976998266995898999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780806|r 246 AYLKLASELIQQE 258 (265)
Q Consensus 246 ~~~~la~el~~~~ 258 (265)
+|++||+||++|.
T Consensus 233 ~y~~LA~~ll~~l 245 (246)
T TIGR03371 233 DIRTLAFWLLTKL 245 (246)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999963
No 3
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=100.00 E-value=0 Score=352.82 Aligned_cols=253 Identities=22% Similarity=0.391 Sum_probs=205.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC---CCCCEEEEEE---CCCCHHH
Q ss_conf 768749999808898888999999999999879959999878776801121246333---4541167630---2577121
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYD---RKYSSYDLLI---EEKNINQ 76 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~---~~~ti~~~l~---~~~~l~~ 76 (265)
..+.|||+|.|+||||||||+|+|||.+||.+|+|||+||+|||||+|.+||+.+.. ...++++.+. ...++.+
T Consensus 118 ~~~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQgnlS~~lG~~pe~d~~~~~tl~~~l~~d~~~~~l~~ 197 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99982899978887765999999999999977998899964561788898089854566531359999844545587999
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCC----CCCCC----CHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 024444442000148874577500012----32222----1023332247651027820331013332222101123310
Q gi|254780806|r 77 ILIQTAIPNLSIIPSTMDLLGIEMILG----GEKDR----LFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADS 148 (265)
Q Consensus 77 ~i~~~~~~~l~iipa~~~~~~~~~~l~----~~~~~----~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~ 148 (265)
++.+|.++|||+|||+.++..++.... ....+ ..++.+.|. .+.++||||||||||++|.+|.|+|+|||.
T Consensus 198 ~I~~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~-~v~d~YDvIiIDcPPsLg~lT~nAL~AAd~ 276 (405)
T PRK13869 198 VIRPTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFD-EVADDYDVVVIDCPPQLGFLTLSGLCAATS 276 (405)
T ss_pred HCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHCE
T ss_conf 5216799996895898899998887599987433155689999999998-644129989995998265999999998286
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH---HHH--CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 011111231137888753357776554---320--267743100202312531001126899988085201562678688
Q gi|254780806|r 149 ILVPLQCEFFALEGLSQLLETVEEVRR---TVN--SALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVR 223 (265)
Q Consensus 149 viip~~p~~~s~~~~~~~~~~i~~~~~---~~~--~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~ 223 (265)
+|||+.|+++++.++.+++.++..+.. ..+ ....+.++++|||++++..+.++.+.+++.||..|+.+.||++..
T Consensus 277 vlIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr~d~~~~~~~~v~~~lr~~fg~~Vl~~~i~~S~a 356 (405)
T PRK13869 277 MVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAA 356 (405)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 38648960878999999999999999999970788785404563140689982599999999999878886080737799
Q ss_pred HHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHHHH
Q ss_conf 987773798579997999-------899999999999999
Q gi|254780806|r 224 ISEAPSYGKPAIIYDLKC-------AGSQAYLKLASELIQ 256 (265)
Q Consensus 224 i~~a~~~g~pv~~~~p~s-------~~a~~~~~la~el~~ 256 (265)
+.+|....++|++.++.. ++.+.+.....||.+
T Consensus 357 is~A~~~~~TvyE~~~~~~~r~Ty~Ra~e~~d~v~~ei~~ 396 (405)
T PRK13869 357 VSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEA 396 (405)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986874496287650527889999999999999999999
No 4
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=100.00 E-value=0 Score=349.67 Aligned_cols=231 Identities=29% Similarity=0.497 Sum_probs=202.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 499998088988889999999999998799599998787-7680112124633345411676302577121024444442
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPN 85 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~ 85 (265)
|+|+|.|+||||||||+|+|||++||++|++|++||+|. .+||+..||++ +.+-|++|+|.++.+++|+|+.++.+|
T Consensus 1 r~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE--~~~VTLhDVLAGeA~i~DAIY~gp~Gn 78 (258)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGME--DKPVTLHDVLAGEADIKDAIYEGPEGN 78 (258)
T ss_pred CEEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 988999778898614000007788986097689994676677689884468--889675221344561001100288984
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 00014887457750001232222102333224765102782033101333222210112331001111123113788875
Q gi|254780806|r 86 LSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQ 165 (265)
Q Consensus 86 l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~ 165 (265)
+.|+|++.+|.++-. .+..+|.+.+. .+.+.|||+|||||+|++.-+..+|.+||.+++|++||++|+.++-+
T Consensus 79 V~V~PagvSLEg~rK------A~~~~L~dV~~-~i~~~~D~lLIDAPAGL~~~a~~Al~~a~elLLVvNPEi~SItDaLK 151 (258)
T TIGR01969 79 VKVIPAGVSLEGLRK------ADPDKLEDVLK-EIIDDTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALK 151 (258)
T ss_pred EEEECCCCCHHHCCC------CCHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 478506122100012------68333289999-87204377887478983378999998618664866765446777889
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEECC-CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 33577765543202677431002023125-31001126899988085201562678688987773798579997999899
Q gi|254780806|r 166 LLETVEEVRRTVNSALDIQGIILTMFDSR-NSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGS 244 (265)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~iv~N~~~~~-~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a 244 (265)
+. .+.++.+ +.++|+|+||+... +.+. .++++..+..+|+. +||+|+.+++|..+|.|++.|+|+|++|
T Consensus 152 ~k----~va~~lG--t~ilG~vlNRv~~~~tel~---~~eiE~iLevPVl~-~vPEDP~VR~AAa~G~P~V~~~P~SpAA 221 (258)
T TIGR01969 152 VK----IVAEKLG--TAILGVVLNRVTRDKTELG---REEIEAILEVPVLG-VVPEDPEVRRAAAFGEPVVVYSPNSPAA 221 (258)
T ss_pred HH----HHHHHCC--CCEEEEEEEECCCCCCCCC---HHHHHHHHCCCEEE-EECCCHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 99----9987608--8324689960236666378---88999884797389-8569843445642485368847998789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780806|r 245 QAYLKLASELIQ 256 (265)
Q Consensus 245 ~~~~~la~el~~ 256 (265)
|+|.+||.+|.+
T Consensus 222 ~A~~eLA~~l~G 233 (258)
T TIGR01969 222 QAFMELAAELAG 233 (258)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999718
No 5
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=0 Score=332.32 Aligned_cols=245 Identities=25% Similarity=0.373 Sum_probs=195.4
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC-CC
Q ss_conf 749999808898888999999999999879959999878-7768011212463334541167630257712102444-44
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT-AI 83 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D-~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~-~~ 83 (265)
+|||+|+|+||||||||+|+|||++||++|+||++||+| +++|++.++|++. ...+++.+++.+++.+++++++. ..
T Consensus 2 ~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~n~~~~lg~~~-~~~~~~~~vl~g~~~l~~~~i~~~~~ 80 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCER-RVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCHHHHHCCCCCHHHHEEECCCC
T ss_conf 74999978999841899999999999977996899968999988873457677-66666898836998588905446876
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 42000148874577500012322221023332247651027820331013332222101123310011111231137888
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGL 163 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~ 163 (265)
+|++++|++.... . . ... ...+.+.+....+.+|||||||||||++..+.+++.+||.+++|++|+++|++++
T Consensus 81 ~~l~ilpa~~~~~-~--~---~~~-~~~~~~~l~~l~~~~yDyIiID~ppgl~~~~~~al~aad~vlvv~tpe~~al~da 153 (270)
T PRK10818 81 ENLYILPASQTRD-K--D---ALT-REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEECCCCHHH-H--H---HHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHH
T ss_conf 9979979996476-7--5---545-9999999997776599899988999866899999985896899738978899879
Q ss_pred HHHHHHHHHHHHHHHCCCC--CCCCCCCEEECCCHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECC
Q ss_conf 7533577765543202677--4310020231253100112--68999880852015626786889877737985799979
Q gi|254780806|r 164 SQLLETVEEVRRTVNSALD--IQGIILTMFDSRNSLSQQV--VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDL 239 (265)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~--~~~iv~N~~~~~~~~~~~~--~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p 239 (265)
+++++.+.....+.+.... ..++++||+++......+. .+++.+.++.+++. +||+|..+.+|.+.|+|++ ++|
T Consensus 154 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg-~IP~d~~v~eA~~~G~Pvv-~~p 231 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVG-VIPEDQSVLRASNQGEPVI-LDI 231 (270)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCCHHHHHHHCCCEEEE-ECCCCHHHHHHCCCCCCEE-ECC
T ss_conf 99999999877765335201001258842453123211001299999732880699-8079746988522799879-899
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999986
Q gi|254780806|r 240 KCAGSQAYLKLASELIQQERH 260 (265)
Q Consensus 240 ~s~~a~~~~~la~el~~~~~~ 260 (265)
+|+++++|++||++|++++++
T Consensus 232 ~s~~a~Ay~~lA~~ll~~~~p 252 (270)
T PRK10818 232 NADAGKAYADTVERLLGEERP 252 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCCC
T ss_conf 998999999999999568777
No 6
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=0 Score=328.72 Aligned_cols=242 Identities=26% Similarity=0.374 Sum_probs=196.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC-
Q ss_conf 68749999808898888999999999999879959999878-7768011212463334541167630257712102444-
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT- 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D-~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~- 81 (265)
.-+|||+|+|+||||||||+|+|||++||+.|+||++||+| +++|++.+||++.. ..+++.+++.+.+.++++++..
T Consensus 11 ~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~-~~~~~~~vl~g~~~l~~~~i~~~ 89 (279)
T CHL00175 11 TMTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENR-VVYTAMEVLEGECRLDQALIRDK 89 (279)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCHHHHCCCCCCCCCCEEECC
T ss_conf 98869999748998448999999999999789988999578999987532686666-66747664078766430134257
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 44420001488745775000123222210233322476510278203310133322221011233100111112311378
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALE 161 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~ 161 (265)
..+|++++|++........ . ...+.+.+....+.+|||||||||||++.++.+++.+||++|+|++|+++|++
T Consensus 90 ~~~~l~ll~~~~~~~~~~~----~---~~~~~~ll~~l~~~~yDyiiID~ppgl~~~~~~al~aad~viIvttpe~~al~ 162 (279)
T CHL00175 90 RWPNLSLLPISKNRQRYNV----T---RKNMNMLVDSLKERNYDYILIDCPAGIDVGFINAIAPAKEAIVVTTPEITAIR 162 (279)
T ss_pred CCCCEEEEECCCHHHHHHH----H---HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHH
T ss_conf 7787799978970544574----1---99999999999727999999818998889999999978906997899789999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH--HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECC
Q ss_conf 88753357776554320267743100202312531001--1268999880852015626786889877737985799979
Q gi|254780806|r 162 GLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ--QVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDL 239 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~--~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p 239 (265)
++++++++++.. .....++|+||+.+...... .....+++.++.++++ .||+|..+.+|.+.|+|+..+.|
T Consensus 163 da~~~i~~~~~~------~~~~~~lvvN~~~~~~~~~~~~~~~~~~~~~l~v~~lg-~IP~D~~v~~a~~~G~Pvv~~~P 235 (279)
T CHL00175 163 DADRVAGLLEAN------GIYNIKLLVNRVRPDMIKANDMMSVRDVQEMLGIPLLG-AIPEDENVIISTNRGEPLVLKKK 235 (279)
T ss_pred HHHHHHHHHHHC------CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEE-ECCCCHHHHHCCCCCEEEEEECC
T ss_conf 999999999975------99862135335645543545534499999971993465-76787789861306905898499
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999986
Q gi|254780806|r 240 KCAGSQAYLKLASELIQQERH 260 (265)
Q Consensus 240 ~s~~a~~~~~la~el~~~~~~ 260 (265)
+|+++++|.+||++|++++..
T Consensus 236 ~S~~a~a~~~iA~~l~~~~~~ 256 (279)
T CHL00175 236 LTLSGIAFENAARRLVGKQVY 256 (279)
T ss_pred CCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999578767
No 7
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=100.00 E-value=0 Score=336.62 Aligned_cols=243 Identities=28% Similarity=0.415 Sum_probs=203.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC-C
Q ss_conf 7499998088988889999999999998799599998787-7680112124633345411676302577121024444-4
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA-I 83 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~-~ 83 (265)
++||+|+|+||||||||+|+||+.+||++|+||++||+|. ..||+..||++.+ .-||+.|++.++|.+++|.++.+ +
T Consensus 1 ~~viViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiGLRNLD~~lGLEnR-ivYt~vDVveG~C~l~qALikDKr~ 79 (272)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENR-IVYTLVDVVEGECRLQQALIKDKRL 79 (272)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 958999817889773589899999999619828999547570345777423103-5453554324842110010012675
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 4200014887457750001232222102333224765102--78203310133322221011233100111112311378
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSD--FSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALE 161 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~--yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~ 161 (265)
+||.++|+++........ ++. + +.|...|.++ |||||||||+|++.-..+|+..||.+||||+||..|++
T Consensus 80 ~NL~LLpAsQ~rdK~~~~----~E~---~-~~lv~~Lk~~~~FDYviIDcPAGIE~GF~nAv~~Ad~AiVVttPEvsavR 151 (272)
T TIGR01968 80 ENLYLLPASQTRDKDAVT----PEQ---M-KKLVNELKEEEHFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVR 151 (272)
T ss_pred HHHHHHHHHHCCCCCCCC----HHH---H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCHH
T ss_conf 235663653023613469----778---9-99999985437930799737877435689987526835898778745100
Q ss_pred HHHHHHHHHHHHHHHHH--CCCCCCCCCCCEEECCCHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 88753357776554320--26774310020231253100112--689998808520156267868898777379857999
Q gi|254780806|r 162 GLSQLLETVEEVRRTVN--SALDIQGIILTMFDSRNSLSQQV--VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIY 237 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~--~~~~~~~iv~N~~~~~~~~~~~~--~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~ 237 (265)
+++|+++.++......+ .... .++|+||++|.-...-++ .+++.+.++.++++ +||+|+.+-.|.+.|.|+.+-
T Consensus 152 DADRvIGlLea~~~i~~~GEE~~-~~LivNR~rP~mV~~G~Mlsi~Dv~~~L~i~LiG-viPeD~~iI~stN~GEP~vl~ 229 (272)
T TIGR01968 152 DADRVIGLLEAKGNIEEKGEEVK-IKLIVNRLRPEMVKKGDMLSIDDVLEILSIPLIG-VIPEDEEIIVSTNKGEPVVLN 229 (272)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEE-EEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCEE-EECCCCCEEEEECCCEEEEEC
T ss_conf 25567524212455445776464-3477851564774168982789999860886168-632998657664561435446
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 799-98999999999999999986
Q gi|254780806|r 238 DLK-CAGSQAYLKLASELIQQERH 260 (265)
Q Consensus 238 ~p~-s~~a~~~~~la~el~~~~~~ 260 (265)
++ |.++++|+++|++|.+++.+
T Consensus 230 -~~L~~~g~Af~~~ArRi~G~~vp 252 (272)
T TIGR01968 230 -KKLSRAGKAFENIARRILGEEVP 252 (272)
T ss_pred -CCCCHHHHHHHHHHHHHCCCCCC
T ss_conf -00261678899998753488643
No 8
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=100.00 E-value=0 Score=328.46 Aligned_cols=254 Identities=25% Similarity=0.377 Sum_probs=204.7
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCHHHCCCCCC---CCCCEEEEE-ECCCCHHH
Q ss_conf 87687499998088988889999999999998799599998-78776801121246333---454116763-02577121
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID-LDPQGNASTGLGIELYD---RKYSSYDLL-IEEKNINQ 76 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID-~D~q~~~~~~l~~~~~~---~~~ti~~~l-~~~~~l~~ 76 (265)
+.+++.||+|.|+||||||||+|+|||.+||.+|+|||+|| +|||||+|.+||+.+.. ...+++... .+..++.+
T Consensus 102 ~g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl~G~RVLlID~LDPQanlT~~~G~~pd~~~~~~~tl~~~~~~~~~~~~~ 181 (388)
T PRK13705 102 EDEFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDAAY 181 (388)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHH
T ss_conf 99987289995278885599999999999997799089995878886564356888876656443024776146665545
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCC-------CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHC
Q ss_conf 024444442000148874577500012322-------2210233322476510278203310133322221011233100
Q gi|254780806|r 77 ILIQTAIPNLSIIPSTMDLLGIEMILGGEK-------DRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSI 149 (265)
Q Consensus 77 ~i~~~~~~~l~iipa~~~~~~~~~~l~~~~-------~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~v 149 (265)
+|.+|.++|||+|||+..+..+|..+.... ....+|++.|. .+.++||||||||||++|.+|.|+|.|||.+
T Consensus 182 ~I~~T~~~gLDlIPs~l~L~~~E~el~~~~~~~~~~~~~~~~Lr~aL~-~v~d~YD~IlIDcPPsLG~LTiNAL~AAd~v 260 (388)
T PRK13705 182 AIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIE-TVAHDYDVIVIDSAPNLGIGTINVVCAADVL 260 (388)
T ss_pred EEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCCCHHHHHHHHHHHHCEE
T ss_conf 043478899799708989999999997755312322258999999998-6250399999958971779999999980854
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCEEECCCHHHHH-HHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 11111231137888753357776554320---2677431002023125310011-2689998808520156267868898
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVN---SALDIQGIILTMFDSRNSLSQQ-VVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~---~~~~~~~iv~N~~~~~~~~~~~-~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
|||+.|+++++.+..+++.++..+.+..+ .... .++++|||+++...+.+ +...+++.||..|+.+.++.+.++.
T Consensus 261 lIPv~p~~lD~~S~~qFl~m~~~l~~~~~~~g~~~~-~r~L~Tr~e~~d~~q~~~m~~~lr~~fg~~vl~~~i~~S~aI~ 339 (388)
T PRK13705 261 IVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPD-VRILLTKYSNANGSQSPWMEEQIRDAWGSMVLKNVVRETDEVG 339 (388)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 867894077699999999999999999875177763-4899872589998789999999999976777636225789998
Q ss_pred HHHHCCCCEEEECCC---C-----HHHHHHHHHHHHHHHH
Q ss_conf 777379857999799---9-----8999999999999999
Q gi|254780806|r 226 EAPSYGKPAIIYDLK---C-----AGSQAYLKLASELIQQ 257 (265)
Q Consensus 226 ~a~~~g~pv~~~~p~---s-----~~a~~~~~la~el~~~ 257 (265)
+|....++|++...+ + ++-+.+.....||.+.
T Consensus 340 ~A~~~~~TlyE~~~~~~~~~~ty~RA~es~d~v~~Ei~~~ 379 (388)
T PRK13705 340 KGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDR 379 (388)
T ss_pred HHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7265207301024444657799999999999999999999
No 9
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=100.00 E-value=0 Score=328.46 Aligned_cols=254 Identities=24% Similarity=0.317 Sum_probs=203.7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCHHHCCCCCC---CCCCEEEEE-ECCCCHHHC
Q ss_conf 7687499998088988889999999999998799599998-78776801121246333---454116763-025771210
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID-LDPQGNASTGLGIELYD---RKYSSYDLL-IEEKNINQI 77 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID-~D~q~~~~~~l~~~~~~---~~~ti~~~l-~~~~~l~~~ 77 (265)
.+++.||+|+|.||||||||+|+|||.+||.+|+|||+|| +|||||+|.+||+.+.. ...+++... .+..++.++
T Consensus 103 ~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~ID~lDPQaslS~~~G~~pd~~~~~~~t~~~~~~~~~~~~~~~ 182 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHH
T ss_conf 88752899861688776999999999999976996899959885200431458888766465541357761575557760
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCC
Q ss_conf 244444420001488745775000123222-------2102333224765102782033101333222210112331001
Q gi|254780806|r 78 LIQTAIPNLSIIPSTMDLLGIEMILGGEKD-------RLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSIL 150 (265)
Q Consensus 78 i~~~~~~~l~iipa~~~~~~~~~~l~~~~~-------~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~vi 150 (265)
|.+|.++|||+|||+..+..+|..+..... ...+|++.|. .+.++||||||||||++|.+|.|+|.|||.+|
T Consensus 183 I~~T~~~gLDlIPa~l~L~~~E~el~~~~~~~~~~~~~~~~L~~aL~-~v~d~YDvVlIDcPPsLG~LTlNAL~AAd~vl 261 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIE-SVWDNYDIIVIDSAPNLGTGTINVVCAADVIV 261 (387)
T ss_pred EECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHCCEEE
T ss_conf 33689899679748889999999998787431422348999999987-52346998999799736899999999829658
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCEEECCCH-HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 1111231137888753357776554320--267743100202312531-0011268999880852015626786889877
Q gi|254780806|r 151 VPLQCEFFALEGLSQLLETVEEVRRTVN--SALDIQGIILTMFDSRNS-LSQQVVSDVRKNLGGKVYNTVIPRNVRISEA 227 (265)
Q Consensus 151 ip~~p~~~s~~~~~~~~~~i~~~~~~~~--~~~~~~~iv~N~~~~~~~-~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a 227 (265)
||+.|+++++.++.+++.++..+.+..+ ......++++|||+++.. .++.+...+++.||..|+...++.+.+|.+|
T Consensus 262 IPv~p~~ld~~S~~qFl~m~~~l~~~v~~~g~~~~~r~LiTr~ep~d~~q~~~m~~~lR~~fg~~vl~~~i~~S~aI~~A 341 (387)
T PHA02519 262 VATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGNQSRWMEEQIRNTWGSMVLRQVVRVTDEVGKG 341 (387)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 68896387799999999999999999862378750468775358999888999999999998788864623587999973
Q ss_pred HHCCCCEEEECC---CC-----HHHHHHHHHHHHHHHH
Q ss_conf 737985799979---99-----8999999999999999
Q gi|254780806|r 228 PSYGKPAIIYDL---KC-----AGSQAYLKLASELIQQ 257 (265)
Q Consensus 228 ~~~g~pv~~~~p---~s-----~~a~~~~~la~el~~~ 257 (265)
....++|++... .+ ++-+.+.....||.+.
T Consensus 342 ~~~~qTlYE~~~~~~~tr~ty~RA~es~d~v~~EI~e~ 379 (387)
T PHA02519 342 QIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFND 379 (387)
T ss_pred HHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65127412135434558899999999999999999999
No 10
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=100.00 E-value=0 Score=329.75 Aligned_cols=238 Identities=19% Similarity=0.248 Sum_probs=189.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
|||+|.|+||||||||+|+|||++|+++|+|||+||+|||++++.+||++.... .++...+.+..++.+.+++. .+|+
T Consensus 2 kiIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~-~g~~~~~l~~~~~~~~~~~~-~~gl 79 (244)
T pfam06564 2 AVLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHS-DGWARAELDGRPWRDAALRY-TPGL 79 (244)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC-CCHHHHHHCCCCHHHHHEEE-CCCE
T ss_conf 299996699986199999999999997799589996898742102358886434-41489987599777744452-6975
Q ss_pred EECCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHH-HHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 00148874577500012-3222210233322476-510278203310133322221011233100111112311378887
Q gi|254780806|r 87 SIIPSTMDLLGIEMILG-GEKDRLFRLDKALSVQ-LTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLS 164 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~-~~~~~~~~l~~~l~~~-l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~ 164 (265)
+++|++ .+...+.... ........+.+.+... ...+||||||||||+++.++.+++.+||.+++|++||..|...+.
T Consensus 80 ~llP~g-~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~~l~~~al~aad~vLv~v~~d~~s~~~l~ 158 (244)
T pfam06564 80 DLLPFG-QLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFSPLTRQLLELADVTLAVVHADANCHIRLH 158 (244)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 897289-9747899989865443799999876421357899999979999689999999976960899688858999973
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 53357776554320267743100202312531001126899988085201562678688987773798579997999899
Q gi|254780806|r 165 QLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGS 244 (265)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a 244 (265)
++... ...++++||++++...++++...+++.++. ++.++||+|+++.+|...|+|+++|+|+|+++
T Consensus 159 ----------~~~~~--~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~-~l~~~I~rd~~l~EA~a~g~pv~~yaP~S~aA 225 (244)
T pfam06564 159 ----------QQALP--AGCHLLINDFRIGSQLQDDLYQLWLQSQRR-LLPIVVHRDEAMAEALAAKQPLGEYRPDSLAA 225 (244)
T ss_pred ----------HCCCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCEEECCCCHHHHHHHCCCCHHHCCCCCHHH
T ss_conf ----------23344--677488642455768999999999986087-25755079882989986799554538699899
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999986
Q gi|254780806|r 245 QAYLKLASELIQQERH 260 (265)
Q Consensus 245 ~~~~~la~el~~~~~~ 260 (265)
++|+.||.|++.+.+.
T Consensus 226 ~dy~~LA~w~l~~~~~ 241 (244)
T pfam06564 226 EEVLTLANWCLLHYSR 241 (244)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999986433
No 11
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=0 Score=312.87 Aligned_cols=254 Identities=44% Similarity=0.661 Sum_probs=208.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC-C
Q ss_conf 8749999808898888999999999999-8799599998787768011212463334541167630257712102444-4
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT-A 82 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~-~ 82 (265)
..+||+|+|.||||||||+|+|||++|| ..|+|||+||+|||+++|.+||.+.. ...+..+++.......+....+ .
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPD-LEGDLYNLLSGLKERPDILDYTVV 79 (259)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCC-CCCCHHHHHHCCCCCCCHHHCCCC
T ss_conf 9769999857888519999999999999838997899978999417778466643-231036676323332210220344
Q ss_pred CCCEEECCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 442000148874577-5000123222210233322476510278203310133322221011233100111112311378
Q gi|254780806|r 83 IPNLSIIPSTMDLLG-IEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALE 161 (265)
Q Consensus 83 ~~~l~iipa~~~~~~-~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~ 161 (265)
.++++++|++.++.. .+..+. .......+.+.+. .+.++||||||||||+++.++.+++.+||.+++|++|+.+++.
T Consensus 80 ~~~l~~ip~~~~l~~~~~~~~~-~~~~~~~l~~~~~-~~~~~yD~iiID~pp~l~~l~~nal~asd~vliP~~~~~~~~~ 157 (259)
T COG1192 80 IEGLDLIPSNIDLAEGAEIELN-AVAKELLLKRLLD-PVKDDYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLE 157 (259)
T ss_pred CCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHH-HHCCCCCEEEECCCCCHHHHHHHHHHHHCCEEECCCCCHHHHH
T ss_conf 5673123576000100456654-2117899999975-2026999899899986167779999982755670475086898
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC
Q ss_conf 88753357776554320267743100202312531001126899988085201562678688987773798579997999
Q gi|254780806|r 162 GLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC 241 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s 241 (265)
++.++++.+..+.+.....+...++++|+++.++..+.+.+..+++.++..++.+.||.+..+.++...|.|+..+++++
T Consensus 158 ~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~~~~~~~~~ 237 (259)
T COG1192 158 GLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKPLYEYDPKS 237 (259)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC
T ss_conf 89999999999998524532325674353474201578999999975143111144765326887887498015507875
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999867
Q gi|254780806|r 242 AGSQAYLKLASELIQQERHR 261 (265)
Q Consensus 242 ~~a~~~~~la~el~~~~~~~ 261 (265)
+++++|.++++|++++....
T Consensus 238 ~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 238 KAAEEYYELAKELLEELLKL 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 57999999999999975431
No 12
>PHA02518 ParA-like protein; Provisional
Probab=100.00 E-value=0 Score=302.29 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=172.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
|||+|+|+||||||||+|+|||++|+++|+||++||+|||++++.|+....... +
T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~r~~~~------------~------------- 55 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGE------------P------------- 55 (211)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCC------------C-------------
T ss_conf 989998089997499999999999997899489997799967889998522689------------9-------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
++|.. ... ..+...+ ..+.++||||||||||+.+.++.+++.+||.+|+|+.|+.+++.++..+
T Consensus 56 -~~~~~----~~~----------~~~~~~l-~~~~~~yD~viID~pp~~~~~~~~al~aaD~vliP~~ps~~d~~~~~~~ 119 (211)
T PHA02518 56 -LIPVV----RMG----------KSIRADL-PKVASGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDL 119 (211)
T ss_pred -CCCHH----HCC----------HHHHHHH-HHHCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
T ss_conf -74012----136----------7799999-9740678889988999742999999995896999637868789999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 35777655432026774310020231253100112689998808520156267868898777379857999799989999
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQA 246 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a~~ 246 (265)
++.++..+. .+..+...+++.|+++.++...+++.+.+ +.++.+++.+.|+++..+.+|...|.||++|+|+++++++
T Consensus 120 ~~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-~~~~~~v~~t~I~~r~~~~~a~~~G~~V~e~~~~~~aa~e 197 (211)
T PHA02518 120 VELIKARQE-VTDGLPKFAFIISRAIKNTQLYREARKAL-AGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEE 197 (211)
T ss_pred HHHHHHHHH-HCCCCCEEEEEEECCCCCCHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHCCCCHHEECCCCHHHHH
T ss_conf 999999998-66567516888623586656999999999-9869981068198878999999759976109979999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780806|r 247 YLKLASELIQQER 259 (265)
Q Consensus 247 ~~~la~el~~~~~ 259 (265)
|+.|++|+++|.+
T Consensus 198 ~~~L~~Eil~r~~ 210 (211)
T PHA02518 198 IIQLVKELFRGIS 210 (211)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999998634
No 13
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=100.00 E-value=0 Score=297.81 Aligned_cols=241 Identities=20% Similarity=0.327 Sum_probs=178.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHCCCCCCCCCCEEEEEECCCCHHHC----CCCC
Q ss_conf 499998088988889999999999998799599998787768-01121246333454116763025771210----2444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGN-ASTGLGIELYDRKYSSYDLLIEEKNINQI----LIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~-~~~~l~~~~~~~~~ti~~~l~~~~~l~~~----i~~~ 81 (265)
|+|+| |+||||||||+|+|||.+||++|+||++||+|||++ .+..||..+ .+++++++.++..+.+. ++..
T Consensus 1 r~iai-~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~---~~~l~d~l~~~~~~~~~~~~~vi~~ 76 (269)
T pfam00142 1 RKIAI-YGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKA---QPTIIDTLREKGLVEDVELEDVVKK 76 (269)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCC---CCCHHHHHCCCCCCCCCCHHHHEEC
T ss_conf 95899-8999768899999999999987990999845899874144438988---8847877604677022407450133
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEEECCCCCC---CCCCHHHHHHHCCCCCCCCC
Q ss_conf 444200014887457750001232222102333224-76510278203310133322---22101123310011111231
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALS-VQLTSDFSYIFLDCPPSFNL---LTMNAMAAADSILVPLQCEF 157 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~-~~l~~~yD~IiiD~pp~~~~---~~~~al~aad~viip~~p~~ 157 (265)
...+++++|++....+... .. .......+.+. ...+++||||||||++.+.. ....+..+||.+++|++|++
T Consensus 77 ~~~gv~~i~~~~~e~~~~~--~~--~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~i~~~~A~~viiv~t~E~ 152 (269)
T pfam00142 77 GYGGIRCVESGGPEPGVGC--AG--RGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREGKAQEVYIVTSGEM 152 (269)
T ss_pred CCCCCEEEECCCCCCCCCC--CH--HHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCCHHHCCCCEEEEEECCCH
T ss_conf 7787268868998656321--10--7899999999982102128889853367402434005334435887999828947
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 13788875335777655432026774310020231253100112689998808520156267868898777379857999
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIY 237 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~ 237 (265)
+|++++.++++.+.+.++.. ++++.|++.|+. +....++..+++.+.++.++++ .||+|..+.+|...|+|+++|
T Consensus 153 ~al~~a~~l~~~i~~~~~~~--~~~i~giv~n~~--~~~~~~~~~~~~~~~~~~~~lg-~IP~d~~v~eA~~~g~pv~~~ 227 (269)
T pfam00142 153 MALYAANNICKGILKYAKSG--GVRLGGLICNSR--KVDDERELIDAFAEALGTQMIH-FVPRDNIVQKAELNKQTVIEY 227 (269)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCC--CCCHHHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCCEEEE
T ss_conf 89999999999999985057--962789982686--5411579999999981994799-779982687542349817998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 79998999999999999999986
Q gi|254780806|r 238 DLKCAGSQAYLKLASELIQQERH 260 (265)
Q Consensus 238 ~p~s~~a~~~~~la~el~~~~~~ 260 (265)
+|+|++|++|++||+||+++.+.
T Consensus 228 ~P~S~~A~ay~~LA~~il~~~~~ 250 (269)
T pfam00142 228 APTCNQAKEYRELARKIIENPEG 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99998999999999999858999
No 14
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=0 Score=294.63 Aligned_cols=239 Identities=22% Similarity=0.346 Sum_probs=180.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEE----ECCCCHHHCCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763----02577121024444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLL----IEEKNINQILIQTA 82 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l----~~~~~l~~~i~~~~ 82 (265)
|+|+|. +||||||||+|+|||.+||+.|+||++||+|||++.+..+... ...+++++.+ ....++.+++.+ .
T Consensus 2 r~Iai~-GKGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l~g~--~~~~~~~~~l~~~~~~~~~~~~~i~~-~ 77 (270)
T cd02040 2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGG--KAIPTVLDTLREKGEVELELEDVIFE-G 77 (270)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCC--CCCCCHHHHHHHCCCCCCCHHHHEEC-C
T ss_conf 589997-9985778999999999999879949998657998513465299--88882899887527776538896133-7
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCCC
Q ss_conf 44200014887457750001232222102333224765102782033101333222210112------331001111123
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQCE 156 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p~ 156 (265)
.+|++++|++......+...... .....+.+.+. .++++|||||||| ++..+++.+. .||.+++|++|+
T Consensus 78 ~~gv~~ip~~~~~~~~~~~gr~~-~~~~~ll~~l~-~~~~~~D~iliD~---lg~~~~~~~~~~i~~~~ad~viiv~t~e 152 (270)
T cd02040 78 FGGIKCVESGGPEPGVGCAGRGV-ITAINLLEELG-AYEDDLDFVIYDV---LGDVVCGGFAMPIREGKAQEIYIVTSGE 152 (270)
T ss_pred CCCCEEEECCCCCCCCHHCCCCH-HHHHHHHHHHH-HHHCCCCEEEEEC---CCCCCCCHHHCHHHHCCCCEEEEECCCC
T ss_conf 67706410599643512124007-88999999854-3440698899823---5633321232303553388799962881
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 11378887533577765543202677431002023125310011268999880852015626786889877737985799
Q gi|254780806|r 157 FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAII 236 (265)
Q Consensus 157 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~ 236 (265)
++|++++.++++.+..+++..+. ++.+++.|+. ++...++..+++.+.++.+++. .||++..+.+|..+|+|+++
T Consensus 153 ~~al~~~~~l~k~i~~~~~~~~~--~l~gvv~~~~--~~~~~~~~~~~~~~~~~~~~l~-~IP~d~~v~EA~~~g~pi~~ 227 (270)
T cd02040 153 MMALYAANNICKGILKYAKSGGV--RLGGLICNSR--NTDREDELIDAFAKRLGTQMIH-FVPRDNVVQRAELRGKTVIE 227 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC--EEEEEEECCC--CCCHHHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCEEEE
T ss_conf 89999999999999999834697--4799983786--6513789999999985995287-77997178751342970799
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 97999899999999999999998
Q gi|254780806|r 237 YDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 237 ~~p~s~~a~~~~~la~el~~~~~ 259 (265)
|+|+|++|++|++||+|++++.+
T Consensus 228 ~~P~S~~A~ay~~LA~eii~~~~ 250 (270)
T cd02040 228 YDPESKQADEYRELARKIVENKL 250 (270)
T ss_pred ECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 79899899999999999984899
No 15
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=1.4e-45 Score=286.80 Aligned_cols=242 Identities=24% Similarity=0.312 Sum_probs=177.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEC----CCCHHHC-----
Q ss_conf 4999980889888899999999999987995999987877680112124633345411676302----5771210-----
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIE----EKNINQI----- 77 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~----~~~l~~~----- 77 (265)
|.|+|. +||||||||+|+|||.+||..|+|||+||||||+|+|..|+.... ..++++.+.+ ...+.+.
T Consensus 2 ~~ia~y-GKGGVGKTTTavNLAaALA~~GkkVLlID~DPqgnaTs~L~~g~~--~~tv~d~~~~~~~~~~~l~~~~~~~~ 78 (292)
T PRK13230 2 KQIAFY-GKGGIGKSTTVCNLAAALSKSGKKVIVVGCDPKHDCTSNLRGGED--IPTVLDVLREKGIDKLGIETIIRENL 78 (292)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf 679991-799857898999999999987995999776797754253015987--75299999861754222333203244
Q ss_pred -----CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC---CCCCCCHHHHHHHC
Q ss_conf -----2444444200014887457750001232222102333224765102782033101333---22221011233100
Q gi|254780806|r 78 -----LIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSF---NLLTMNAMAAADSI 149 (265)
Q Consensus 78 -----i~~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~---~~~~~~al~aad~v 149 (265)
++....+++.+++++....+..............+.+ +.....-.|||+++|+++.. +..+-..+.+||.+
T Consensus 79 ~~~~dii~~~~~gv~~ve~g~~~~g~g~~gr~~~~~~~ll~~-~~~~~~~~~D~vl~D~lg~~~~~g~~~p~~~~~Ad~V 157 (292)
T PRK13230 79 LKKEDIIYEGFNGIYCVEAGGPKPGYGCAGRGVIVVIDLLKK-MNVFEELGVDVVLYDVLGDVVCGGFAMPLRMGLADQI 157 (292)
T ss_pred CCHHHEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHCCCEEEECCCCCCCCCCCCCCCHHCCCCEE
T ss_conf 652322222678627861689876641131478999999998-1312330876575034355664642156202018989
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 111112311378887533577765543202677431002023125310-0112689998808520156267868898777
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL-SQQVVSDVRKNLGGKVYNTVIPRNVRISEAP 228 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~-~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~ 228 (265)
+||+++|.++++++.+++++++.++.+.+ ..+.|+|.| .++.. ..++.++++++|+.+++.+ ||++..+++|.
T Consensus 158 lIp~q~E~~ALeg~~~l~~tI~~~~~~~~--~~l~Giv~n---~r~~l~~~~vv~e~~~~fg~~v~~~-IPrnv~l~EAp 231 (292)
T PRK13230 158 YVVTSSDYMALYAANNICKGIKQFAKRGG--STLGGIIYN---VRGSMDAFDIVSEFASKLNTNIIGK-VPNSNIINEAE 231 (292)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEE---CCCCCCHHHHHHHHHHHHCCEEEEE-CCCCCHHHHCC
T ss_conf 99727389999999999999999984579--757999970---8988647899999999829915996-79960634143
Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 379857999799989999999999999999
Q gi|254780806|r 229 SYGKPAIIYDLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 229 ~~g~pv~~~~p~s~~a~~~~~la~el~~~~ 258 (265)
.+|+|+++|+|+|+.|++|++||+||++..
T Consensus 232 s~G~pvi~ydP~S~gA~aY~~LA~ei~en~ 261 (292)
T PRK13230 232 IDGKTAIEYAPDSEISKIYRELAEKIYENN 261 (292)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 049824897989978999999999999679
No 16
>PRK11670 putative ATPase; Provisional
Probab=100.00 E-value=2.9e-44 Score=277.91 Aligned_cols=242 Identities=23% Similarity=0.253 Sum_probs=183.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCC
Q ss_conf 8749999808898888999999999999879959999878776-801121246333454116763025771210244444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAI 83 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~ 83 (265)
-.+||+|+|+||||||||+|+|||.+||++|+||+++|+|.+| |++.+||.+... .+..+ . ..+.+...
T Consensus 106 v~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgllDADi~Gpsip~mlG~~~~~--~~~~d----~----~~i~P~~~ 175 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQR--PTSPD----G----THMAPIMA 175 (369)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCC--CCCCC----C----CEECCCCC
T ss_conf 68899998589988899999999999996699378982478887650230665456--64688----9----66376000
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC--CCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 4200014887457750001232222102333224765102782033101333222--21011233100111112311378
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLL--TMNAMAAADSILVPLQCEFFALE 161 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~--~~~al~aad~viip~~p~~~s~~ 161 (265)
.++.+++-+.-........+..+.....+.+++....|++|||+|||||||+|+. +.......+.+++|++|+..|+.
T Consensus 176 ~gi~~~S~g~l~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtgDi~Ltl~q~v~~~gavvVTTPq~~Al~ 255 (369)
T PRK11670 176 HGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALI 255 (369)
T ss_pred CCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 58125302202376640222130167999998777433788889983799875277788764576607996277376999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEE---ECCCHHH-----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 887533577765543202677431002023---1253100-----11268999880852015626786889877737985
Q gi|254780806|r 162 GLSQLLETVEEVRRTVNSALDIQGIILTMF---DSRNSLS-----QQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP 233 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~---~~~~~~~-----~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p 233 (265)
++.+.+.++++. +++++|+|.||. .++.... +.-.+++.+.|+.++++ .||.|..+.++.+.|+|
T Consensus 256 Da~k~i~m~~k~------~vpilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~lLG-~IP~d~~I~ea~d~G~P 328 (369)
T PRK11670 256 DAKKGIVMFEKV------EVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLG-QMPLHISLREDLDRGTP 328 (369)
T ss_pred HHHHHHHHHHHC------CCCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEE-ECCCCHHHHHHCCCCCC
T ss_conf 999999999854------88850688636333368999710013666099999983998799-79898899961859985
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799979998999999999999999986774
Q gi|254780806|r 234 AIIYDLKCAGSQAYLKLASELIQQERHRKE 263 (265)
Q Consensus 234 v~~~~p~s~~a~~~~~la~el~~~~~~~~~ 263 (265)
++.+.|+|+++++|++||+++.++.-.+.+
T Consensus 329 vV~~~P~S~aA~Af~~iA~~la~~~~~~~~ 358 (369)
T PRK11670 329 TVVSRPESEFTAIYRQLADRVAAQLYWQGE 358 (369)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 698289998999999999999999965146
No 17
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=7e-45 Score=281.70 Aligned_cols=242 Identities=29% Similarity=0.419 Sum_probs=200.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC-C
Q ss_conf 7499998088988889999999999998799599998787-7680112124633345411676302577121024444-4
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA-I 83 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~-~ 83 (265)
+|+|+|.|+||||||||+++||+.+||++|+||++||+|. ..|++..+|++.. .-|++.|++.+++.+++++++.+ .
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~R-iVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENR-IVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCE-EEEEEHHHHCCCCCHHHHHHCCCCC
T ss_conf 649999448887674310677899999739859999667672044666434201-5654013444766365676403567
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 42000148874577500012322221023332247651-02782033101333222210112331001111123113788
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLT-SDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEG 162 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~-~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~ 162 (265)
+||.++|+++....... .++....+.+ .+. .+||||++|||+|+.....+|++.||..++|++|+..|+++
T Consensus 81 ~nL~lLPAsQtrdKdal----t~E~v~~vv~----eL~~~~fDyIi~DsPAGIE~G~~~A~~~Ad~AiVVtnPEvSsVRD 152 (272)
T COG2894 81 ENLFLLPASQTRDKDAL----TPEGVKKVVN----ELKAMDFDYIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRD 152 (272)
T ss_pred CCEEECCCCCCCCCCCC----CHHHHHHHHH----HHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 85266144323672227----9999999999----997669988996484067788886541026379974887554234
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCCCCCCCEEECCCHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEC
Q ss_conf 875335777655432--026774310020231253100112--6899988085201562678688987773798579997
Q gi|254780806|r 163 LSQLLETVEEVRRTV--NSALDIQGIILTMFDSRNSLSQQV--VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYD 238 (265)
Q Consensus 163 ~~~~~~~i~~~~~~~--~~~~~~~~iv~N~~~~~~~~~~~~--~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~ 238 (265)
+.|++..++....+. +..+ ..++++||+++.....-++ .+++.+.+..++++ +||+|+.+.+|++.|.|+.. .
T Consensus 153 sDRiiGlLesk~~rae~~~~~-~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liG-iiPed~~Vi~asN~GePv~l-~ 229 (272)
T COG2894 153 SDRIIGLLESKSRRAEIGEEP-KEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIG-VIPEDQDVLRASNKGEPVIL-D 229 (272)
T ss_pred CHHHEEEHHCCCCHHHCCCCC-CCEEEEECCCHHHHCCCCCCCHHHHHHHHCCCEEE-EECCCHHHEEECCCCCCEEE-C
T ss_conf 112202012145423307766-63489971688881157725399999974774477-60485333000478887675-7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999899999999999999998
Q gi|254780806|r 239 LKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 239 p~s~~a~~~~~la~el~~~~~ 259 (265)
+++.++++|.++|++|++++.
T Consensus 230 ~~~~a~~Ay~d~arRllGe~v 250 (272)
T COG2894 230 DNSDAGKAYRDIARRLLGEEV 250 (272)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 875177999999999708886
No 18
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=100.00 E-value=1.3e-43 Score=274.17 Aligned_cols=178 Identities=31% Similarity=0.463 Sum_probs=151.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 999980889888899999999999987995999987877-6801121246333454116763025771210244444420
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
||+|+|+||||||||+|+|||++||++|+||++||+||| ++++..++.+.. ..+++ .
T Consensus 1 iIav~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D~~~~~l~~~~~~~~~-~~~~~---------------------~ 58 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENR-VVYTL---------------------H 58 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC-CCCHH---------------------H
T ss_conf 9899739998709999999999999779918999589999983666176556-65313---------------------1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
++++ .|||||||||+++..+.+++.+||.+++|++|+.+|++++.++
T Consensus 59 ~vl~---------------------------------gD~viiD~ppg~~~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~ 105 (179)
T cd02036 59 DVLA---------------------------------GDYILIDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRV 105 (179)
T ss_pred CCCC---------------------------------CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHH
T ss_conf 1266---------------------------------9999997999988899999984681256378858899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 35777655432026774310020231253100112689998808520156267868898777379857999799989999
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQA 246 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a~~ 246 (265)
.+++++. +.+..++|+||++++....++..+++++.++.+++. .||+|..+.+|...|+|+.++.|+|+++++
T Consensus 106 ~~~~~~~------~~~~~~vv~Nr~~~~~~~~~~~~~~~~~~l~~~vlg-~IP~d~~v~eA~~~g~Pv~~~~P~s~aA~a 178 (179)
T cd02036 106 KGLLEAL------GIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLLG-VIPEDPAVIRATNRGEPVVLNKPKSPAAQA 178 (179)
T ss_pred HHHHHHC------CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEEEECCCCHHHHC
T ss_conf 9999825------996469998454676663677999999855996798-877988999987679538987999956630
Q ss_pred H
Q ss_conf 9
Q gi|254780806|r 247 Y 247 (265)
Q Consensus 247 ~ 247 (265)
|
T Consensus 179 y 179 (179)
T cd02036 179 Y 179 (179)
T ss_pred C
T ss_conf 9
No 19
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=1.2e-42 Score=268.41 Aligned_cols=237 Identities=23% Similarity=0.376 Sum_probs=181.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-CCCCCCCCCCEEEEEECC----CCHHHCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121-246333454116763025----7712102444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-GIELYDRKYSSYDLLIEE----KNINQILIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l-~~~~~~~~~ti~~~l~~~----~~l~~~i~~~ 81 (265)
|-|+|. +|||+||||+|+|||.+||+.|+||++||||||++.|..+ |... .+|+.|.+.+. .++++.+. .
T Consensus 2 ~~iaiy-GKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~---~~tvld~l~~~~~~~~~l~~v~~-~ 76 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLN---QKTVLDTLRSEGDEGVDLDVVMQ-P 76 (273)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCC---CCCHHHHHHHCCCCCCCHHHEEE-C
T ss_conf 579997-998665887899999999977996999897884427778858998---88799999861856563666154-2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf 444200014887457750001232222102333224765102782033101333222210112------33100111112
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC 155 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p 155 (265)
...++.+++++....+........... ..+.+.+. .+.++|||||+|+ ++..+++++. .|+.+++|+++
T Consensus 77 g~~gv~cve~ggp~~g~gcagrgii~~-~~lle~l~-~~~~~~Dyvl~Dv---lgdvvcggfa~P~~~~~A~evlIVts~ 151 (273)
T PRK13232 77 GFGDIKCVESGGPEPGVGCAGRGIITS-IGLLENLG-AYTDDLDYVFYDV---LGDVVCGGFAMPIREGKAKEIYIVASG 151 (273)
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHH-HHHHHHCC-CCCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 889738986899876765453047888-88999708-3214798899941---473323653144201657689998076
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI 235 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~ 235 (265)
|++|++++.++.+.++++.+. ..++.|+|.|+-+ ....+++.+++.++++.+++. +||+|..+++|..+|+|++
T Consensus 152 E~~slyaannI~k~i~~~~~~---~~rl~GiI~n~r~--~~~~~e~v~~fa~~~g~~vi~-~IPr~~~v~~A~~~g~tvi 225 (273)
T PRK13232 152 ELMAIYAANNICKGLAKFAKG---GARLGGIICNSRN--VDGERELLEAFAKKLGSQLIH-FVPRDNIVQRAEINRKTVI 225 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEECCC--CCCHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEE
T ss_conf 088899999999999999621---8850148850557--763899999999971996699-7899778876487298358
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999899999999999999998
Q gi|254780806|r 236 IYDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 236 ~~~p~s~~a~~~~~la~el~~~~~ 259 (265)
+|+|+|+.|++|++||++|.++.+
T Consensus 226 e~~P~S~~A~aY~~LA~~I~~~~~ 249 (273)
T PRK13232 226 DFDPESNQAKEYLTLAHNVQNNDK 249 (273)
T ss_pred EECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 979999799999999999985899
No 20
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=4.1e-42 Score=265.33 Aligned_cols=238 Identities=21% Similarity=0.327 Sum_probs=180.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-CCCCCCCCCCEEEEEEC---CCCHHHCCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121-24633345411676302---577121024444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-GIELYDRKYSSYDLLIE---EKNINQILIQTA 82 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l-~~~~~~~~~ti~~~l~~---~~~l~~~i~~~~ 82 (265)
|-|+|. +|||+||||+|+|||.+||++|+||++||||||++.|..+ |.. ...|+.|.+.. ...+++++. ..
T Consensus 2 ~~iaiy-GKGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~---~~~tvld~l~~~~~~~~ledvi~-~g 76 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGL---QQKTVLDTLREEGEDVELEDIIK-EG 76 (274)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCC---CCCCHHHHHHHCCCCCCHHHHEE-EC
T ss_conf 679997-99855476789999999997899799989898453667873899---89978999986287767789443-17
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf 44200014887457750001232222102333224765-102782033101333222210112------33100111112
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL-TSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC 155 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l-~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p 155 (265)
..++.+++++....+....-.........|. .+.... ..+||||++|| ++..+++++. +||.++||+++
T Consensus 77 ~~gi~cveaggp~pg~gcagrgii~~~~~L~-~l~~~~~~~~~DyVl~Dv---LGdvvcggFa~pir~~~A~eV~IVts~ 152 (274)
T PRK13235 77 YGNTRCTESGGPEPGVGCAGRGIITSVNLLE-QLGAYDDEWNLDYVFYDV---LGDVVCGGFAMPIRDGKAEEIYIVCSG 152 (274)
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 8981898689987566757631525899998-817754335776899813---785312451155100658789999168
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI 235 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~ 235 (265)
|++|++++.++.+.+++++++.+ .++.|++.|+.+.. ..++..+++.+.++.+++. +||+|..+++|..+|+||+
T Consensus 153 E~~AL~aannI~k~i~~~~~~~~--~~l~Gii~N~r~~~--~~~~~v~~fa~~~g~~vi~-~IPr~~~V~~Ae~~~~tVi 227 (274)
T PRK13235 153 EMMAMYAANNICKGILKYADAGG--VRLGGLICNSRKVD--NEREMIEELARKLGTQMIH-FVPRDNMVQRAEINRKTVI 227 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCC--CHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEE
T ss_conf 36899999999999999974379--54889997367787--5789999999974993699-7589458899987397789
Q ss_pred EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99799989999999999999999
Q gi|254780806|r 236 IYDLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 236 ~~~p~s~~a~~~~~la~el~~~~ 258 (265)
+|+|+|+.|++|++||++|++.+
T Consensus 228 e~~P~S~~A~~Yr~LA~~I~~n~ 250 (274)
T PRK13235 228 DYDPTHGQADEYRALARKIDENE 250 (274)
T ss_pred EECCCCHHHHHHHHHHHHHHHCC
T ss_conf 97899879999999999998389
No 21
>PRK10037 cell division protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=268.24 Aligned_cols=236 Identities=19% Similarity=0.243 Sum_probs=184.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
|+|++.|.||||||||+|+|||++|++.|++|++||+|||..+..+||++..+. .++...+.+..++.+++.+ +.+|+
T Consensus 2 ~iial~s~kGGVGkTTltAnLA~aL~~~g~~VlaID~dpqN~Lrlhfg~~~~~~-~Gwa~a~l~g~~W~~a~~~-~~~gl 79 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHR-QGWARALLDGQDWRDAGLR-YTSQL 79 (250)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCC-CCHHHHHHCCCCHHHHHHH-CCCCC
T ss_conf 379996078887689999999999997799189995782566787549985447-7299998569978999850-56993
Q ss_pred EECCCCCCCCCCCCCCCCC-CCCCHHHHHHH-HHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 0014887457750001232-22210233322-476510278203310133322221011233100111112311378887
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGE-KDRLFRLDKAL-SVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLS 164 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~-~~~~~~l~~~l-~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~ 164 (265)
+++|.+. +...+....+. ......+...+ ......+||+|||||||+.++.+..++..||.+++|+.||..|.--+.
T Consensus 80 ~~LPfG~-l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~vliD~P~g~s~~~~~~l~~AD~vLvVv~aDa~s~~~L~ 158 (250)
T PRK10037 80 DLLPFGQ-LSIEEQENPQHWQTTLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLSLCDHSLAIVNVDANCHIRLH 158 (250)
T ss_pred EEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHH
T ss_conf 6972787-998998638877651799999986200257899899965999829999999857878998367877899873
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 53357776554320267743100202312531001126899988085201562678688987773798579997999899
Q gi|254780806|r 165 QLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGS 244 (265)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a 244 (265)
+ +... .-.++++|++++.+.+++++...+++..+ ..++.+|++|+++.||..+++|+.+|+|.|.++
T Consensus 159 q---------~~~~---~g~~~liNq~~~~s~l~~Dl~~l~~q~~~-~llp~~IHrDeav~EAlA~~~~v~~y~P~SqAa 225 (250)
T PRK10037 159 Q---------QALP---AGAHILINDLRIGSQLQDDLYQLWLQSQR-RLLPMLIHRDEAMAECLAAKQPLGEYRSDSLAA 225 (250)
T ss_pred H---------HCCC---CCCCEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEEECCCCHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 4---------2147---89827751667110466999999997442-415567517546899986599874759757788
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780806|r 245 QAYLKLASELIQQE 258 (265)
Q Consensus 245 ~~~~~la~el~~~~ 258 (265)
++|..||.|.+-..
T Consensus 226 ~D~~~LA~W~l~~~ 239 (250)
T PRK10037 226 EEILTLANWCLLHY 239 (250)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999860
No 22
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.5e-41 Score=260.72 Aligned_cols=239 Identities=21% Similarity=0.331 Sum_probs=182.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHH-HCCCCCCCCCCEEEEEEC----CCCHHHCCC
Q ss_conf 7499998088988889999999999998-7995999987877680112-124633345411676302----577121024
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQGNASTG-LGIELYDRKYSSYDLLIE----EKNINQILI 79 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q~~~~~~-l~~~~~~~~~ti~~~l~~----~~~l~~~i~ 79 (265)
+|.|+|. +|||+||||+++|||.+||+ .|+||++||||||++.|.. ++..+ .+|+.|++.+ ...++++ +
T Consensus 2 ~~~iaiy-GKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~---~~tv~d~l~~~~~~~~~~e~i-i 76 (275)
T PRK13233 2 TRKIAIY-GKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKP---QTTMMDTLRELGEEKVTPDKV-I 76 (275)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCC---CCCHHHHHHHCCCCCCCHHHH-H
T ss_conf 7389998-9985446545999999999647988999797887613677608987---883999998628875538888-7
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCC
Q ss_conf 44444200014887457750001232222102333224765102782033101333222210112------331001111
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPL 153 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~ 153 (265)
.+...|+.+++++....+........... ..+.+.+. .+.++||||++|+++ ..++..+. .||.+++|+
T Consensus 77 ~~g~~gv~cVEaGgp~pG~gcagrgii~~-~~lle~~~-~~~~~~D~Vl~DvLG---dVvcGgFa~Pir~~~AdeV~IVt 151 (275)
T PRK13233 77 KTGFKGIRCVESGGPEPGVGCAGRGVITA-ITLMEEHG-AYEDDLDFVFFDVLG---DVVCGGFAMPIRDGKAQEVYIVA 151 (275)
T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCHHHH-HHHHHHHC-CCCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 53789857986899986665576312358-88899809-743468889984156---11055510343136688899994
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 12311378887533577765543202677431002023125310011268999880852015626786889877737985
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP 233 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p 233 (265)
++|++|+.++.++.+.+.++..+.+ .++.|+|.|+-+ .....+..+++.+.++.+++. +||+|..+++|..+|++
T Consensus 152 s~E~msL~aannI~~~l~~~~~~~~--~~l~Gii~N~r~--~~~e~~~v~~fa~~ig~~vi~-~IPr~~~V~~Ae~~~~t 226 (275)
T PRK13233 152 SGEMMALYAANNICKGLVKYAEQSG--VRLGGIICNSRN--VDGELELLEEFTDAIGTQLIH-FVPRDNIVQKAEFNKKT 226 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCC--CCCHHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCE
T ss_conf 6837999999999999999850589--638999971788--860799999999985995799-77897788877873976
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79997999899999999999999998
Q gi|254780806|r 234 AIIYDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 234 v~~~~p~s~~a~~~~~la~el~~~~~ 259 (265)
|++|+|+|+.+++|++||++|++...
T Consensus 227 Vie~~P~S~~A~~Y~~LAk~I~~n~~ 252 (275)
T PRK13233 227 VVEFDPTCNQAHEYKELARKIIENKN 252 (275)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 79989999799999999999985899
No 23
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=4.8e-41 Score=259.12 Aligned_cols=236 Identities=26% Similarity=0.378 Sum_probs=183.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 874999980889888899999999-999987995999987877-680112124633345411676302577121024444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLS-TALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA-~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
.+++|+|.|+||||||||+|+||+ ..++..|++|++||+|+. +|++..||++.. +.++.+++.++++++|+++++.
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~--~~~l~dvL~~~~~~~Di~~~~~ 78 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESK--PTTLHDVLAGEASIEDIIYETP 78 (262)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCC--CCCHHHHHHCCCCHHHEEEECC
T ss_conf 97899998458875689899869999996489769999658888728888588888--5509999707787768023157
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 44200014887457750001232222102333224765102782033101333222210112331001111123113788
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEG 162 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~ 162 (265)
.+||++||++.++.++-.. .++ .+..++ ..+...||||+||||||++.-+..++..||.+|+|++|++.++.+
T Consensus 79 ~~gl~vipg~~~~~~~~~~---~~~---~~~~~~-~~l~~~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~ 151 (262)
T COG0455 79 QDGLYVLPGGSGLEDLAKL---DPE---DLEDVI-KELEELYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITD 151 (262)
T ss_pred CCCEEEEECCCCHHHHHHC---CHH---HHHHHH-HHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf 6898996078876888616---988---899999-998752999999689996688899987368179992798520899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC--CCCCEEECCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHCCCCEEEECC
Q ss_conf 87533577765543202677431--00202312531001126899988-0852015626786889877737985799979
Q gi|254780806|r 163 LSQLLETVEEVRRTVNSALDIQG--IILTMFDSRNSLSQQVVSDVRKN-LGGKVYNTVIPRNVRISEAPSYGKPAIIYDL 239 (265)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~~~~--iv~N~~~~~~~~~~~~~~~l~~~-~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p 239 (265)
+..+++.+..... ...+ +|+||+++.. ..++....+.+. ...+.+ .++|++..+.++...|.|+..+.|
T Consensus 152 A~~~i~~~~~~~~------~~~~~~vV~N~v~~~~-e~~~~~~~~~~~~~~~~~~-~~i~~~~~v~~a~~~g~p~~~~~p 223 (262)
T COG0455 152 AYKTIKILSKLGL------DLLGRRVVLNRVRSTK-EGVDVAALLIQVVKQVPVL-QVIPFDPEVRRALAEGKPIVLYSP 223 (262)
T ss_pred HHHHHHHHHHCCC------CCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHCCCE-EEECCCHHHHHHHHCCCCEEEECC
T ss_conf 9999999997387------6433158997036666-5467899999999707743-471567578998624986797288
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999
Q gi|254780806|r 240 KCAGSQAYLKLASELIQQ 257 (265)
Q Consensus 240 ~s~~a~~~~~la~el~~~ 257 (265)
+|++++++++||..+.+.
T Consensus 224 ~s~as~ai~~lA~~l~~~ 241 (262)
T COG0455 224 NSKASQAIKELAAKLAGL 241 (262)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 978999999999998605
No 24
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=100.00 E-value=7.6e-40 Score=252.12 Aligned_cols=204 Identities=34% Similarity=0.464 Sum_probs=144.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCC---CEEEEEECCCCHHH-CCCC-CCC
Q ss_conf 999808898888999999999999879959999878776801121246333454---11676302577121-0244-444
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKY---SSYDLLIEEKNINQ-ILIQ-TAI 83 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~---ti~~~l~~~~~l~~-~i~~-~~~ 83 (265)
|+|.|+||||||||+|+|||++||++|+||++||+|||++.+..|+........ +............+ .+.. ...
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 42000148874577500012322221023332247651027820331013332222101123310011111231137888
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGL 163 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~ 163 (265)
++++++|++..+...+... .........++++||||||||||+++..+.+++.+||.+++|++|+..|++++
T Consensus 81 ~~l~l~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~D~viiD~pp~~~~~~~~al~~ad~vivv~~p~~~sl~~~ 152 (212)
T pfam01656 81 DPLLLIPSNLSLANFESEL--------ILEGGEEGLIKLAYDYVIIDGAPGLGELTANALVAADILVVPIEPEGVAVLGA 152 (212)
T ss_pred CCEEEECCCHHHHHHHHHH--------HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHH
T ss_conf 8746533501566777777--------99999987666049989994799755999999983998999948976999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HHHHHHHHHHHCCC--CCCCCCCCCHHHHH
Q ss_conf 75335777655432026774310020231253100-11268999880852--01562678688987
Q gi|254780806|r 164 SQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS-QQVVSDVRKNLGGK--VYNTVIPRNVRISE 226 (265)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~-~~~~~~l~~~~~~~--v~~~~Ip~~~~i~~ 226 (265)
.++++.+++++ +++.|+|+|||+.+...+ .+....+++..+.+ ++.++||+|..+.+
T Consensus 153 ~~l~~~~~~l~------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~~ 212 (212)
T pfam01656 153 QRLLELVERLG------LKILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLALSE 212 (212)
T ss_pred HHHHHHHHHCC------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 99999999859------9622999914889983663078999999978997514041168776687
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=100.00 E-value=1.3e-37 Score=239.15 Aligned_cols=234 Identities=22% Similarity=0.234 Sum_probs=176.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCC------CHHHCCCCC
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257------712102444
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEK------NINQILIQT 81 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~------~l~~~i~~~ 81 (265)
+|+|. +|||+||||+|+||+.+||++|+||++|||||..+.+..|.- ...+|+.|++.+.+ .+++.+. .
T Consensus 2 kiaiy-GKGGIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Dst~~L~g---~~~~tvld~l~~~~~~~~~~~~~d~v~-~ 76 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG---FLIPTVIDILEEVDFHYEELWPEDVIY-E 76 (267)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCC---CCCCCHHHHHHHHCCCHHHCCHHHHHH-C
T ss_conf 79997-799657877899999999987995999778995155675269---886839999986088666414778753-0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCCCCEEEECCCCC-CCCCCHHHHHHHCCCCCCCCCHH
Q ss_conf 4442000148874577500012322221023332247-651027820331013332-22210112331001111123113
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSV-QLTSDFSYIFLDCPPSFN-LLTMNAMAAADSILVPLQCEFFA 159 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~-~l~~~yD~IiiD~pp~~~-~~~~~al~aad~viip~~p~~~s 159 (265)
...|+.++.++..-.+....-.... ...+.|.. .+.++||||++|+++..- -.+.+.+..||.+++|++||++|
T Consensus 77 g~~gv~cvEaGgP~pg~Gcagrgi~----~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi~~Ad~~~iVTs~e~~s 152 (267)
T cd02032 77 GYGGVDCVEAGGPPAGAGCGGYVVG----ETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDS 152 (267)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCHH----HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 7678457665899999887764048----999999871664347789995366544566567610068899995671878
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECC
Q ss_conf 78887533577765543202677431002023125310011268999880852015626786889877737985799979
Q gi|254780806|r 160 LEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDL 239 (265)
Q Consensus 160 ~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p 239 (265)
++.+.++.+.++....+.+ .+..|+|.|+.+ .+++++++.+.++.+++. +||+|..+.+|...|+||+++.|
T Consensus 153 l~aAn~I~~~i~~~~~~~~--~rl~GlI~Nr~~-----~~~~i~~fa~~lg~~lig-~VP~d~~V~~se~~g~tvie~~p 224 (267)
T cd02032 153 IFAANRIAAAVREKAKTYK--VRLAGLIANRTD-----KTDLIDKFVEAVGMPVLA-VLPLIEDIRRSRVKGKTLFEMDE 224 (267)
T ss_pred HHHHHHHHHHHHHHHHCCC--CCCCEEEEECCC-----CHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCEEEEECC
T ss_conf 9999999999999753379--764227874698-----578999999972994699-66993388999873986898489
Q ss_pred CCH----HHHHHHHHHHHHHHHH
Q ss_conf 998----9999999999999999
Q gi|254780806|r 240 KCA----GSQAYLKLASELIQQE 258 (265)
Q Consensus 240 ~s~----~a~~~~~la~el~~~~ 258 (265)
+++ .++.|++||+.|++..
T Consensus 225 ~~~~~s~~a~~Yr~LA~~i~~n~ 247 (267)
T cd02032 225 SDEELAYRCDYYLLIADQLLAGP 247 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 98437899999999999998399
No 26
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=7.9e-37 Score=234.51 Aligned_cols=233 Identities=20% Similarity=0.305 Sum_probs=177.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCC--CHHHCCCCCCC
Q ss_conf 7499998088988889999999999998799599998787768011212463334541167630257--71210244444
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEK--NINQILIQTAI 83 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~--~l~~~i~~~~~ 83 (265)
-|.|+|. +|||+||||+++|||.+|| .|+||++|||||+++.|..|.-. ..+|+.+.+.+.. ++.+.+.+ .+
T Consensus 2 m~~iAiy-GKGGIGKSTt~~NlaaalA-~g~rVl~igcDpk~dst~~L~G~---~~ptvl~~l~~~~~~~~~dvv~~-g~ 75 (264)
T PRK13231 2 LKKIAIY-GKGGIGKSTTVSNMAAAYS-SDNSTLVIGCDPKADTTRTLVGK---RIPTVLDTLKDNRQPELEDIIYE-GY 75 (264)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHCC---CCCCHHHHHHHCCCCCHHHHEEE-CC
T ss_conf 4289997-8985478889999999998-79977998568885024676199---98838898631277776563121-78
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHH------HHHHHCCCCCCCCC
Q ss_conf 420001488745775000123222210233322476510278203310133322221011------23310011111231
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAM------AAADSILVPLQCEF 157 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al------~aad~viip~~p~~ 157 (265)
.|+.+++++..-.+....-.........|.+ + ..++.++|||++|+.+.. ++..+ ..||.+++|+++|+
T Consensus 76 ~gi~cvesGgpepg~gcagrgi~~~~~lLe~-~-~~~~~~~D~vl~Dvlgdv---vcggfa~Pir~~~Adev~IVts~e~ 150 (264)
T PRK13231 76 NNTLCVESGGPEPGVGCAGRGVIVAMNLLEK-L-GVFDNDPDVVIYDVLGDV---VCGGFSVPLREDYADEVYIVTSGEY 150 (264)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-H-CCCCCCCCEEEEECCCCC---CCCCEECCCCCCCCCEEEEEECCCH
T ss_conf 9849973799887766565217689899987-2-642247987999435872---0566704554266988999947858
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 13788875335777655432026774310020231253100112689998808520156267868898777379857999
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIY 237 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~ 237 (265)
+|+.++.++.+.+++++. ++.|+|.|+.+.. ...++.+++.+.+|.+++. .||++..+++|...|+||+++
T Consensus 151 msLyaAnnI~~~i~~~~~------rl~GiI~N~r~~~--~e~~iv~~fa~~~g~~vl~-~IPr~~~V~~ae~~~~tVie~ 221 (264)
T PRK13231 151 MSLYAANNIAKGIKKLKG------KLGGIICNCRNVK--NEVEIVSEFASLIGSRIIG-IIPRSNLVQESELKASTVVET 221 (264)
T ss_pred HHHHHHHHHHHHHHHHCC------CCCEEEEECCCCC--CHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEEEE
T ss_conf 999999999999999546------4420896068988--7799999999971996899-668947888888629758997
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 799989999999999999999
Q gi|254780806|r 238 DLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 238 ~p~s~~a~~~~~la~el~~~~ 258 (265)
.|.|+.++.|++||++|.+..
T Consensus 222 ~P~S~~A~~Yr~LA~~I~~~~ 242 (264)
T PRK13231 222 FPESSQASIYSELANNIMNNQ 242 (264)
T ss_pred CCCCHHHHHHHHHHHHHHHCC
T ss_conf 989889999999999998589
No 27
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=100.00 E-value=9.5e-38 Score=239.87 Aligned_cols=201 Identities=23% Similarity=0.354 Sum_probs=150.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEC-----CCCHHHCCCCC
Q ss_conf 4999980889888899999999999987995999987877680112124633345411676302-----57712102444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIE-----EKNINQILIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~-----~~~l~~~i~~~ 81 (265)
|.|+|. +||||||||+++|||.+||++||||++||||||++.+..+.-. ...+++.+++.. +..+++.+. +
T Consensus 1 ~~iaiy-GKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~--~~~~~i~~~~~~~~~~~~~~~~~ii~-~ 76 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGG--KAPTTILELAAEDGHVEDLELEDVIF-E 76 (212)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCC--CCCCCHHHHHHHHCCCCCEEEEEEEE-E
T ss_conf 959998-8983568778999999999869969999038998733031199--77871999987527866445667899-6
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH------HHHCCCCCCC
Q ss_conf 4442000148874577500012322221023332247651027820331013332222101123------3100111112
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA------ADSILVPLQC 155 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a------ad~viip~~p 155 (265)
...|++++|++....+.+............+.+ +. ..+++|||||||| ++..+++++.+ ||.+++|++|
T Consensus 77 g~~gv~~veaggp~~g~~~ag~~i~~~~~ll~~-~~-~~~~~~D~IliD~---lGdvv~~gf~~pi~~~~Ad~vlIvtt~ 151 (212)
T cd02117 77 GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEK-EG-FAEDDLDVVLYDV---LGDVVCGGFAMPIREGKADEIYIVTSG 151 (212)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HH-HHCCCCCEEEEEC---CCCCEECCCCCCCCCCCCCEEEEECCC
T ss_conf 688708998899776765454117889999997-41-0025799999965---885403563343211668889998069
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 311378887533577765543202677431002023125310011268999880852015626786
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRN 221 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~ 221 (265)
|++|++++.++++.++.++++.+ +++.|+|.||.+.. ...+..+++.+.+|.+++. +||+|
T Consensus 152 E~~Al~~a~~l~k~I~~~~~~~n--~~l~GiI~N~~~~~--~~~~~i~~f~~~~g~~vl~-~IP~d 212 (212)
T cd02117 152 EFMALYAANNICKGIRKYAKSGG--VRLGGLICNSRNTD--RETELIDAFAERLGTQVIH-FVPRD 212 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCCCC--CHHHHHHHHHHHHCCEEEE-ECCCC
T ss_conf 35788988999999999973679--81489998467888--6499999999983991899-74899
No 28
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=231.32 Aligned_cols=237 Identities=19% Similarity=0.237 Sum_probs=177.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCC------CHHHCCC
Q ss_conf 7499998088988889999999999998799599998787768011212463334541167630257------7121024
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEK------NINQILI 79 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~------~l~~~i~ 79 (265)
+++|+|. +|||+||||+++||+.+||++|+||++|||||..+.+..|.- ...+|+.|++.+.. .+++.+.
T Consensus 2 ~~~iaiy-GKGGIGKSTttaNlsaALA~~GkkV~~IgcDPk~DsT~~L~g---~~~~tild~l~~~~~~~~~~~~ed~~~ 77 (269)
T PRK13185 2 ALVLAVY-GKGGIGKSTTSSNLSAALAKLGKKVLQIGCDPKHDSTFTLTG---KLVPTVIDILEEVDFHSEELRPEDFVF 77 (269)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCC---CCCCCHHHHHHHCCCCHHHCCHHHHHH
T ss_conf 5399997-899547888999999999976993899818997323011259---987878999974387602125667763
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCHHHHHHHCCCCCCCCCH
Q ss_conf 444442000148874577500012322221023332247651027820331013332-2221011233100111112311
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN-LLTMNAMAAADSILVPLQCEFF 158 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~-~~~~~al~aad~viip~~p~~~ 158 (265)
..+.++.++.++..-.+....-.........|.+ + .+.++||||++|+++..- --..+.+..||.+++|+.+|++
T Consensus 78 -~G~~gv~cvEaGGP~pG~GCaGrgi~~~~~~L~~-~--~~~~~~D~Vl~DvlgdVvCGGFa~Pi~~Ad~~~IVts~e~~ 153 (269)
T PRK13185 78 -EGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKE-H--HLLDDYDVILFDVLGDVVCGGFAAPLQYADYALIVTANDFD 153 (269)
T ss_pred -CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHH-C--CCCCCCCEEEEECCCCCCCCCCCCCHHCCCEEEEEECCHHH
T ss_conf -3767705664389999877676431899999987-2--87433787999536743336555751008889999253087
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEC
Q ss_conf 37888753357776554320267743100202312531001126899988085201562678688987773798579997
Q gi|254780806|r 159 ALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYD 238 (265)
Q Consensus 159 s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~ 238 (265)
|++.+.++...++....+. ..++.|+|.|+.+ ..++++++.+..|.+++. +||+|..+.+|..+|+|++++.
T Consensus 154 al~aAnnI~~~i~~~a~~~--~~rl~GiI~Nr~~-----~~d~v~~fa~~~g~~vl~-~IP~~~~V~~se~~g~TviE~~ 225 (269)
T PRK13185 154 SIFAANRIAAAIQAKAKNY--KVRLAGVIANRSG-----GTDQIDKFNERVGLRTLA-HVPDLDAIRRSRLKGKTLFEME 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCCEEEEECCC-----CHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCEEEEEC
T ss_conf 8999999999998653015--8532325761688-----377999999986997699-7899788999987498678858
Q ss_pred CCCHHHH---HHHHHHHHHHHHH
Q ss_conf 9998999---9999999999999
Q gi|254780806|r 239 LKCAGSQ---AYLKLASELIQQE 258 (265)
Q Consensus 239 p~s~~a~---~~~~la~el~~~~ 258 (265)
|.+..++ +|++||+.|++..
T Consensus 226 p~~~~a~v~~~Yr~LA~~i~~~~ 248 (269)
T PRK13185 226 ETDELEEVQNEYLRLADQLLAGP 248 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99817899999999999998289
No 29
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=100.00 E-value=1.6e-36 Score=232.71 Aligned_cols=210 Identities=25% Similarity=0.323 Sum_probs=132.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 499998088988889999999999998799599998787-7680112124633345411676302577121024444442
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPN 85 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~ 85 (265)
.||+|.|+||||||||+|+|||.+||++|+||++||+|| |++++.+++-... .. ... +
T Consensus 1 hIIaVaNqKGGvGKTTtavnLA~aLA~~G~rVllIDlDpqq~slt~~l~nr~~-----~~----~~~------------~ 59 (261)
T pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYIENRAA-----TA----ERT------------G 59 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-----HH----HHC------------C
T ss_conf 97999717898729999999999999889978999799999851234430355-----65----513------------8
Q ss_pred EEE-CCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 000-1488745775000123-22221023332247651027820331013332222101123310011111231137888
Q gi|254780806|r 86 LSI-IPSTMDLLGIEMILGG-EKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGL 163 (265)
Q Consensus 86 l~i-ipa~~~~~~~~~~l~~-~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~ 163 (265)
+++ +|....+...+..+.. ......+|.+.+. .+.++||||||||||+++.++.+++.+||.+|+|+++|.++++++
T Consensus 60 ~~l~~P~~~~l~~~~~~~~~~~~~~~~~L~~al~-~l~~~yDfIlIDcPPsl~~Lt~nAl~aAD~vIiPlq~sf~dld~L 138 (261)
T pfam09140 60 LDLPVPKHLCLPDDVSEVFDGESADDARLEEAVA-DLEQDADFIVIDTPGSDSPLSRLAHSRADTLVTPLNDSFVDFDLL 138 (261)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHH
T ss_conf 6534665344550677761345578999999999-987579999996998573999999998398763244015514335
Q ss_pred HHHH-------------HHH---HHHHHHH-HCCCCCCCCCCCEEECCCHHHH----HHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 7533-------------577---7655432-0267743100202312531001----12689998808520156267868
Q gi|254780806|r 164 SQLL-------------ETV---EEVRRTV-NSALDIQGIILTMFDSRNSLSQ----QVVSDVRKNLGGKVYNTVIPRNV 222 (265)
Q Consensus 164 ~~~~-------------~~i---~~~~~~~-~~~~~~~~iv~N~~~~~~~~~~----~~~~~l~~~~~~~v~~~~Ip~~~ 222 (265)
.++- +++ .+.+... ..+++.. ++-||........+ +.++++.+..|-.+.+ -+.+..
T Consensus 139 ~~vd~~~~~i~~~s~y~e~vw~~r~~ra~~~~~~idwi-vlrnRl~~~~~rnk~~~~~~l~~Ls~rigfr~~~-g~~eRv 216 (261)
T pfam09140 139 GQVDPETFKVTRPSFYAEMVWEARKKRAQADRAPIDWI-VLRNRLSTLEARNKRRVEDALNELSKRVGFRVAP-GFSERV 216 (261)
T ss_pred HHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEE-EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHH
T ss_conf 21370343213621789999999998743689886479-9805621888788899999999997640752257-743135
Q ss_pred HHHHHHHCCCCEEEECCC
Q ss_conf 898777379857999799
Q gi|254780806|r 223 RISEAPSYGKPAIIYDLK 240 (265)
Q Consensus 223 ~i~~a~~~g~pv~~~~p~ 240 (265)
.+.+-.-.|.++.+..+.
T Consensus 217 iyRelfp~gltl~dl~~~ 234 (261)
T pfam09140 217 IYRELFPRGLTLLDLKDL 234 (261)
T ss_pred HHHHHCCCCCCHHCCCCC
T ss_conf 787762467714118512
No 30
>KOG3022 consensus
Probab=100.00 E-value=1.5e-35 Score=226.96 Aligned_cols=240 Identities=20% Similarity=0.249 Sum_probs=185.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 68749999808898888999999999999879959999878776-80112124633345411676302577121024444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
+-..+|+|.|+||||||||+|+|||++||..|++|.++|.|.-| |+..+||.+.+. .++.-.+ +... ..
T Consensus 45 ~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~----~~~~~~g---~~Pv---~~ 114 (300)
T KOG3022 45 GVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV----VHQSDNG---WIPV---VV 114 (300)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCE----EEECCCC---CEEE---EE
T ss_conf 454589998678877616899999999861797179975035587705340877744----5504887---4144---44
Q ss_pred CCCEEECCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH---HHHCCCCCCCCCH
Q ss_conf 442000148874577-500012322221023332247651027820331013332222101123---3100111112311
Q gi|254780806|r 83 IPNLSIIPSTMDLLG-IEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA---ADSILVPLQCEFF 158 (265)
Q Consensus 83 ~~~l~iipa~~~~~~-~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a---ad~viip~~p~~~ 158 (265)
..|+.++.-+.-+.. .+...+..+....+++++|.+.-|++.||++||||||.++..+..... +|..++|++|...
T Consensus 115 ~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~v 194 (300)
T KOG3022 115 NKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEV 194 (300)
T ss_pred CCCEEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHEEECCCCCCCEEEEECCHHH
T ss_conf 38767887564328887662654547889999997168877767799958999870143100004455734998172055
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE---CCCHHH-----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 3788875335777655432026774310020231---253100-----11268999880852015626786889877737
Q gi|254780806|r 159 ALEGLSQLLETVEEVRRTVNSALDIQGIILTMFD---SRNSLS-----QQVVSDVRKNLGGKVYNTVIPRNVRISEAPSY 230 (265)
Q Consensus 159 s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~---~~~~~~-----~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~ 230 (265)
++.++.+-++++++. +++++|+|.||.. +..... ..--+.+.+.+|.+.+. .||.|..+.++.+.
T Consensus 195 Al~Dv~K~i~fc~K~------~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg-~iPld~~i~~~~d~ 267 (300)
T KOG3022 195 ALQDVRKEIDFCRKA------GIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLG-SLPLDPLIAESSDS 267 (300)
T ss_pred HHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCEEE-ECCCCHHHHHHCCC
T ss_conf 668888650266645------98568889625553078878755333676289999872997575-06788799975348
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 985799979998999999999999999986
Q gi|254780806|r 231 GKPAIIYDLKCAGSQAYLKLASELIQQERH 260 (265)
Q Consensus 231 g~pv~~~~p~s~~a~~~~~la~el~~~~~~ 260 (265)
|.|+++..|.|.++++|.+++.+|.+.-..
T Consensus 268 G~~~v~~~p~s~~~~af~~i~~~i~~~~~~ 297 (300)
T KOG3022 268 GVPFVEEYPDSPASEAFEDIAEKLVEQLSS 297 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 983476079956999999999999986120
No 31
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=100.00 E-value=1.8e-34 Score=220.81 Aligned_cols=235 Identities=21% Similarity=0.200 Sum_probs=176.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCC------CHHHCCCCC
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257------712102444
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEK------NINQILIQT 81 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~------~l~~~i~~~ 81 (265)
.|+|. +|||+||||+++|++.+||++|+||++|+|||..+.+..|.- ...+|+.|++.++. .+++++. .
T Consensus 2 ~iaiy-GKGGIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT~~L~g---~~~~tvld~l~~~~~~~~~~~~edvi~-~ 76 (271)
T CHL00072 2 KIAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTG---FLIPTIIDTLQSKDYHYEDVWPEDVIY-K 76 (271)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCC---CCCCCHHHHHHHHCCCCCCCCHHHHHH-C
T ss_conf 69997-898544858899999999987997999789973777740069---988859999975378732164999985-2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf 44420001488745775000123222210233322476510278203310133322-22101123310011111231137
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL-LTMNAMAAADSILVPLQCEFFAL 160 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~-~~~~al~aad~viip~~p~~~s~ 160 (265)
...|+.++.++..-.+....-.........|.+ +. ..++||||++|+++..-. -..+.+..||.+++|+++|++|+
T Consensus 77 G~~gi~cvEaGGPepGvGCaGrgi~~~i~lL~~-l~--~~~d~D~V~yDvlgDVVCGGFa~Pi~~Ad~~~iVts~e~mal 153 (271)
T CHL00072 77 GYGGVDCVEAGGPPAGAGCGGYVVGETVKLLKE-LN--AFYEYDVILFDVLGDVVCGGFAAPLNYADYCIIITDNGFDAL 153 (271)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH-CC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHH
T ss_conf 778846654389998877788651999999997-37--621388899944776556545675000888999956708899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCC
Q ss_conf 88875335777655432026774310020231253100112689998808520156267868898777379857999799
Q gi|254780806|r 161 EGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240 (265)
Q Consensus 161 ~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~ 240 (265)
+.+.++.+.++++....+ .++.|+|.|+.+ .+++++++.+..|.+++. .||+|..+.+|..+|+|++++.|.
T Consensus 154 yaANnI~~~i~~~a~~~~--~rl~GiI~N~~~-----~~~~v~~fa~~~g~~~i~-~iPrd~~V~~ae~~~~TviE~~p~ 225 (271)
T CHL00072 154 FAANRIAASVREKARTHP--LRLAGLVGNRTS-----KRDLIDKYVEACPMPVLE-VLPLIEDIRVSRVKGKTLFEMAES 225 (271)
T ss_pred HHHHHHHHHHHHHHHCCC--CCCCEEEECCCC-----CHHHHHHHHHHCCCCEEE-ECCCCCHHHHHHHCCCCEEECCCC
T ss_conf 999999999999730468--644436522688-----378999999973996698-568711668999748820422899
Q ss_pred CHH----HHHHHHHHHHHHHHH
Q ss_conf 989----999999999999999
Q gi|254780806|r 241 CAG----SQAYLKLASELIQQE 258 (265)
Q Consensus 241 s~~----a~~~~~la~el~~~~ 258 (265)
++. ++.|++||+.|++..
T Consensus 226 s~~~~~~~~~Yr~LA~~I~~n~ 247 (271)
T CHL00072 226 EPSLNYVCDFYLNIADQLLSQP 247 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8247899999999999997399
No 32
>PRK13236 nitrogenase reductase; Reviewed
Probab=100.00 E-value=5.9e-33 Score=211.89 Aligned_cols=243 Identities=18% Similarity=0.283 Sum_probs=184.6
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCC-----CHH
Q ss_conf 987687499998088988889999999999998799599998787768011212463334541167630257-----712
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEK-----NIN 75 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~-----~l~ 75 (265)
|.+++-|.|+|. +|||+||||++.||+.+||++|+||++|.|||..+.|..|.- .....++.+++.... .++
T Consensus 1 ~~~~~mk~IAiY-GKGGIGKSTts~NlsAAlA~~G~rVl~IGCDPK~DSTr~Llg--g~~~~tvld~~~e~~~~ed~~le 77 (295)
T PRK13236 1 MTDENIRQIAFY-GKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLH--SKAQTTVLHLAAERGAVEDLELE 77 (295)
T ss_pred CCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHC--CCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 986776189996-798434757899999999977996999788980266787638--99997188888760984445488
Q ss_pred HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHC
Q ss_conf 102444444200014887457750001232222102333224765102782033101333222210112------33100
Q gi|254780806|r 76 QILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSI 149 (265)
Q Consensus 76 ~~i~~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~v 149 (265)
+++. ..+.|+.++.++..-.+....-.........|.+. . ..++||||+.|. +++..+..+. .||.+
T Consensus 78 dvv~-~G~~Gi~CvEsGGPePGvGCAGRGIitai~lLee~-g--a~e~~D~V~yDV---LGDVVCGGFAmPir~g~A~ev 150 (295)
T PRK13236 78 EVML-TGFRGVRCVESGGPEPGVGCAGRGIITAINFLEEN-G--AYQDLDFVSYDV---LGDVVCGGFAMPIREGKAQEI 150 (295)
T ss_pred HHHH-CCCCCCEEEECCCCCCCCCCCCCEEEEHHHHHHHC-C--CCCCCCEEEEEE---CCCCCCCCCCCCCCCCCCCEE
T ss_conf 8742-26588379878999998988886254056679871-9--855699898850---577532675465667876489
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11111231137888753357776554320267743100202312531001126899988085201562678688987773
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPS 229 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~ 229 (265)
++|+..|++|+..+.++.+.+.++..+.+. ++.|+|.|+- +.....++.+++.+..|.+++. .||+|..+++|-.
T Consensus 151 yiVtSge~malyAANNI~~~i~~~a~~g~~--rlgGiI~N~r--~~~~e~~~v~~fa~~~gt~ii~-~iPr~~~V~~ae~ 225 (295)
T PRK13236 151 YIVTSGEMMAMYAANNIARGILKYAHTGGV--RLGGLICNSR--NVDREIELIETLAKRLNTQMIH-FVPRDNIVQHAEL 225 (295)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEECC--CCCCHHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHH
T ss_conf 999568188999999999999999742697--0358996078--8874799999999981992699-6578388889997
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79857999799989999999999999999
Q gi|254780806|r 230 YGKPAIIYDLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 230 ~g~pv~~~~p~s~~a~~~~~la~el~~~~ 258 (265)
++++|+++.|.|..++.|++||+.|++..
T Consensus 226 ~~~TviE~~P~s~~A~~Yr~LA~~i~~n~ 254 (295)
T PRK13236 226 RRMTVNEYAPDSNQGNEYRILAKKIINND 254 (295)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 39876887889779999999999998589
No 33
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=100.00 E-value=3.7e-33 Score=213.07 Aligned_cols=212 Identities=22% Similarity=0.231 Sum_probs=153.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
+||+|.|+|||+||||++.|||.+++.+|++|++||+|||++++.|.-..... .. .. +..
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~---~~---------~~--------~~~ 61 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRK---GT---------WD--------PAC 61 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC---CC---------CC--------CCC
T ss_conf 37999617998659999999999999689959999689986889999987646---88---------88--------765
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
.+.... ....+.+.+...-...||||||||||+.+.++..++..||.++||++|+++++..+.+.
T Consensus 62 ~v~~~~---------------~~~~l~~~~~~~~~~~yD~VIIDtpg~~s~~~~~AI~~ADlVLIP~qpSplD~~~a~~t 126 (231)
T pfam07015 62 EIFNAD---------------ELPLLEQAYEHAEGSGFDYALADTHGGSSELNNTIIASSDLLLIPTMLTPLDIDEALAT 126 (231)
T ss_pred CEECCC---------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
T ss_conf 222056---------------60158999998865799989983998575899999997898997789982339999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC----
Q ss_conf 35777655432026774310020231253100-1126899988085201562678688987773798579997999----
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTMFDSRNSLS-QQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC---- 241 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~-~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s---- 241 (265)
++.+++..+..+..+.. .+++||+....... .....++.+. .++|.+.|.++.+|.+....|....+....+
T Consensus 127 ~~~i~~~~~~~~~~ip~-avl~tRv~~~~~~~~~~~i~e~le~--lpvl~t~i~eR~AF~~if~~G~l~~~l~~~~~~~~ 203 (231)
T pfam07015 127 YRYVIELLLTENLAIPT-AILRQRVPVGRLTSSQRFCSDMLEQ--LPVFDCPMHERDAFAAMKERGMLHITLENLSQIPS 203 (231)
T ss_pred HHHHHHHHHHHCCCCCE-EEEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCC
T ss_conf 99999999973789980-3345511400021789999999964--98543542028999999980462000268777851
Q ss_pred --HHHHHHHHHHHHHHH
Q ss_conf --899999999999999
Q gi|254780806|r 242 --AGSQAYLKLASELIQ 256 (265)
Q Consensus 242 --~~a~~~~~la~el~~ 256 (265)
++++.++.+++|+..
T Consensus 204 ~~~a~~n~~~~~~e~~~ 220 (231)
T pfam07015 204 MRLALRNLRTAMEDLDR 220 (231)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 12899999999999999
No 34
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=3.7e-32 Score=207.27 Aligned_cols=239 Identities=19% Similarity=0.274 Sum_probs=178.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCC-----CHHHCCC
Q ss_conf 87499998088988889999999999998799599998787768011212463334541167630257-----7121024
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEK-----NINQILI 79 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~-----~l~~~i~ 79 (265)
.=|-|+|. +|||+||||++.||+.+||++|+||++|.|||..+.|..|.- .....|+.+++.... .+++++.
T Consensus 3 ~mr~IAiY-GKGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llg--g~~~~Tvld~~~~~~~~ed~~ledvv~ 79 (293)
T PRK13234 3 ALRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILN--AKAQDTVLSLAAEAGSVEDLELEDVMK 79 (293)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHC--CCCCCCHHHHHHHCCCCCCCCHHHHHH
T ss_conf 77579997-798445877899999999977996999748983165687628--999970889987649812153878974
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCC
Q ss_conf 44444200014887457750001232222102333224765102782033101333222210112------331001111
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPL 153 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~ 153 (265)
....|+.++.++..-.+....-.........|.+ +. +.++||||+.|. +++..+..+. .||.+++|+
T Consensus 80 -~G~~gI~CVEsGGPePGvGCAGRGIitai~~Le~-lg--a~ed~D~V~yDV---LGDVVCGGFAmPir~g~A~evyIVt 152 (293)
T PRK13234 80 -IGYKGIKCVESGGPEPGVGCAGRGVITSINFLEE-NG--AYDDVDYVSYDV---LGDVVCGGFAMPIRENKAQEIYIVM 152 (293)
T ss_pred -CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH-CC--CCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf -3779848976899899888777131467888877-18--765799999956---7766514755665458876899994
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 12311378887533577765543202677431002023125310011268999880852015626786889877737985
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP 233 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p 233 (265)
..|+.|+..+.++.+.+..+..+.+. ++.|+|.|+-+ .....++.+++.+..+.+++. +||+|..+++|-.++++
T Consensus 153 Sge~mslyAANnI~~~i~~~~~~g~~--rlgGlI~N~r~--~~~e~~~v~~fa~~~gt~ii~-~IPrs~~v~~aE~~~~T 227 (293)
T PRK13234 153 SGEMMALYAANNIAKGILKYANSGGV--RLGGLICNERQ--TDRELELAEALAKRLGSKLIH-FVPRDNIVQHAELRRMT 227 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCC--CCCHHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCE
T ss_conf 67187999999999999998632696--24689971789--853799999999984993799-77996889999973977
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7999799989999999999999999
Q gi|254780806|r 234 AIIYDLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 234 v~~~~p~s~~a~~~~~la~el~~~~ 258 (265)
|+++.|.|..++.|++||+.|.+..
T Consensus 228 viE~~P~s~~A~~Yr~LA~~I~~n~ 252 (293)
T PRK13234 228 VIEYAPDSKQAGEYRALAEKIHANS 252 (293)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 7896889879999999999998478
No 35
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=100.00 E-value=1.4e-32 Score=209.79 Aligned_cols=238 Identities=23% Similarity=0.337 Sum_probs=190.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECC---CC--HHHCCCC
Q ss_conf 49999808898888999999999999879-959999878776801121246333454116763025---77--1210244
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIG-ENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEE---KN--INQILIQ 80 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g-~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~---~~--l~~~i~~ 80 (265)
|-|||. +|||.||||++.|+|.+||..| |||+++-|||.++.|..|.- .....|+.|+|.+. +. +++ ++.
T Consensus 1 rqiAiY-GKGGIGKSTT~~N~~AAla~~gdkkVl~~GCDPKaDsTr~l~G--g~~~~TVLd~lre~G~ve~~~~e~-v~~ 76 (278)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGDKKVLVVGCDPKADSTRLLLG--GKAQPTVLDVLREKGAVEDVELED-VIK 76 (278)
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHC--CCCCCHHHHHHHHCCCCCCCCCCH-HHE
T ss_conf 948886-2788670068889999998624955899723885202346517--744554899998568711445102-200
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCCHHHH------HHHCCCCC
Q ss_conf 444420001488745775000123222210233322476510-27820331013332222101123------31001111
Q gi|254780806|r 81 TAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTS-DFSYIFLDCPPSFNLLTMNAMAA------ADSILVPL 153 (265)
Q Consensus 81 ~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~-~yD~IiiD~pp~~~~~~~~al~a------ad~viip~ 153 (265)
..+.++.++-|+-+--+....-..-.-....|.+. ....+ +.|||++|. +|+..+-.++. ||.+.||+
T Consensus 77 ~Gf~girCVESGGPePGVGCAGRGvItai~lL~~~--g~y~dLdlD~V~YDV---LGDVVCGGFAmP~R~g~A~eiYiVt 151 (278)
T TIGR01287 77 EGFGGIRCVESGGPEPGVGCAGRGVITAIDLLEEL--GAYEDLDLDVVIYDV---LGDVVCGGFAMPLREGLAQEIYIVT 151 (278)
T ss_pred ECCCCEEEEEECCCCCCCCCCCCHHEEEEHHHHHC--CCCCCCCCCEEEEEE---CCCEEECCCCCHHHCCCCCEEEEEC
T ss_conf 16883188850768789520687112013377533--787311677689842---3655656603610058865488860
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 12311378887533577765543202677431002023125310011268999880852015626786889877737985
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP 233 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p 233 (265)
.-|+++++.+.++-+-|.++..+.+.. .-|||-|. .+.....|+++++.+.+|..++. +||+|..+++|-.++++
T Consensus 152 Sge~MAlYAANNI~kGI~kYa~~GGv~--LGG~IcN~--R~~~~e~El~~~fA~~lgtq~i~-~VPrs~~V~~AEl~~~T 226 (278)
T TIGR01287 152 SGEMMALYAANNIAKGILKYAKSGGVR--LGGIICNS--RNVDDEKELVDEFAKKLGTQLIH-FVPRSNIVQKAELEKKT 226 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCE--ECCEEECC--CCCCCHHHHHHHHHHHHCCEEEE-ECCCCCCCHHHHHCCCC
T ss_conf 340678999978877789997538822--22478714--57621789999999873770675-21788521278736884
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7999799989999999999999999
Q gi|254780806|r 234 AIIYDLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 234 v~~~~p~s~~a~~~~~la~el~~~~ 258 (265)
|.||+|.|..|+.|+.||+.|.+.+
T Consensus 227 VIE~dP~s~qA~~YR~LA~~I~~N~ 251 (278)
T TIGR01287 227 VIEYDPESEQANEYRELAKKIYENE 251 (278)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 5633887157899999999998257
No 36
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=100.00 E-value=7.1e-32 Score=205.58 Aligned_cols=236 Identities=25% Similarity=0.320 Sum_probs=188.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEC----CCC--HHHCCCC
Q ss_conf 4999980889888899999999999987995999987877680112124633345411676302----577--1210244
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIE----EKN--INQILIQ 80 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~----~~~--l~~~i~~ 80 (265)
+||||. +|||+||||+++||+.++|++|||||-|-|||.-++|..|--.. .+|+.|+|.. .++ ..|.|+
T Consensus 1 ~~lAvY-GKGGiGKSTTssNLSvA~A~~GkkVlQIGCDPKhDSTFTLtg~L---~PTvidvL~~~~yH~E~v~~eD~iy- 75 (275)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVALAKKGKKVLQIGCDPKHDSTFTLTGKL---IPTVIDVLDAVNYHYEDVEPEDVIY- 75 (275)
T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC---CCCEEEECCCCCCCEEECCCCCEEE-
T ss_conf 968886-38887700467899999984699189852578888774544741---6746442256763031033378778-
Q ss_pred CCCCCEEECCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHH----HHHHHCCCCCC
Q ss_conf 4444200014887457750001--23222210233322476510278203310133322221011----23310011111
Q gi|254780806|r 81 TAIPNLSIIPSTMDLLGIEMIL--GGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAM----AAADSILVPLQ 154 (265)
Q Consensus 81 ~~~~~l~iipa~~~~~~~~~~l--~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al----~aad~viip~~ 154 (265)
+.+.|+|++-++-.+++...=- ..+. ...|++ + .+-++||+|++|. +|+..+-.+ ..||+.+|++.
T Consensus 76 ~GY~GVd~vEaGGPPAGsGCGGYVVGeT--VKLLke-~--~~~~~yDVilFDV---LGDVVCGGFAaPL~YAd~aLvva~ 147 (275)
T TIGR01281 76 TGYGGVDCVEAGGPPAGSGCGGYVVGET--VKLLKE-L--DVLDEYDVILFDV---LGDVVCGGFAAPLQYADYALVVAA 147 (275)
T ss_pred ECCCCEEEEECCCCCCCCCCCCEEECCH--HHHHHH-C--CHHHHCCEEEEEE---CCCEEECCCCCHHHHHCCEEEEEC
T ss_conf 3468568871473689888987471522--455665-2--6334289799962---575551754641123212566610
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 23113788875335777655432026774310020231253100112689998808520156267868898777379857
Q gi|254780806|r 155 CEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPA 234 (265)
Q Consensus 155 p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv 234 (265)
=+.-|+=.+.|+-..+.+..++ +.+++..|||-||++.+..-..+.++...+..+.+++. ++|+-+.|++|-..|+++
T Consensus 148 NDFDalFAANRia~av~~K~~~-Gy~vkLAGiIaNR~~~~yGGGtdlle~F~~~~~~~~l~-~~P~~d~IR~SRl~g~Tl 225 (275)
T TIGR01281 148 NDFDALFAANRIAAAVREKAKS-GYDVKLAGIIANRVDKEYGGGTDLLEKFAERVGTPVLG-VVPRLDEIRRSRLKGKTL 225 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEE-ECCCHHHCCHHHHCCCCE
T ss_conf 7721789999999999998417-97078732663121131178715689999862883220-077711102010158612
Q ss_pred EEECCCC----HHHHHHHHHHHHHHHH
Q ss_conf 9997999----8999999999999999
Q gi|254780806|r 235 IIYDLKC----AGSQAYLKLASELIQQ 257 (265)
Q Consensus 235 ~~~~p~s----~~a~~~~~la~el~~~ 257 (265)
+|++|.. ...+.|.++|+.|++|
T Consensus 226 FEmee~~p~~~~~~~~y~~~A~~LL~~ 252 (275)
T TIGR01281 226 FEMEESGPELEEVTAEYLKMAEYLLAK 252 (275)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 301589965889999999999999863
No 37
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=100.00 E-value=7.3e-32 Score=205.53 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=141.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
+||+|.|+|||+||||++.|||..++.+|++|++||+|||++++.|......... +. +..
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~------------~~--------~~~ 61 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNT------------WD--------PAC 61 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCC------------CC--------CCC
T ss_conf 3799961899876999999999999978995999968998688999987652589------------88--------775
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
.+... .. ...+...+...-...||||||||||+.+.++..++..||.+|||+.|+++++..+.++
T Consensus 62 ~v~~~------------~~---~~~l~~~~e~~~~~~~D~VIIDtpg~~s~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~t 126 (231)
T PRK13849 62 EVYAA------------DE---LPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALST 126 (231)
T ss_pred CEEEC------------CC---HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
T ss_conf 23405------------65---2578999988753699889981899775899999997898997799986679999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEECC--CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC---EEEECCC
Q ss_conf 3577765543202677431002023125--310011268999880852015626786889877737985---7999799
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTMFDSR--NSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP---AIIYDLK 240 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~~~~~--~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p---v~~~~p~ 240 (265)
++.+++..+..+.+++. .+++||+... +...+.+.+.+ + +.++|++.|+++.+|.+-...|.- +.+..|.
T Consensus 127 v~~i~~~~~~~~~~ip~-~vlltRv~a~~~t~~~~~i~~~l-e--~lPvl~T~i~eR~Af~~i~~~G~Lh~~l~~~~~~ 201 (231)
T PRK13849 127 YRYVIELLLSENLAIPT-AILRQRVPVGRLTTSQRAMSDML-E--SLPVVDSPMHERDAFAAMKERGMLHLTLLNLSTD 201 (231)
T ss_pred HHHHHHHHHHHCCCCCE-EEEEEECCHHHHCHHHHHHHHHH-H--CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 99999999972878865-66654050454068899999999-6--2995555302279999999835146889865999
No 38
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.97 E-value=3e-32 Score=207.73 Aligned_cols=177 Identities=23% Similarity=0.281 Sum_probs=120.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 999808898888999999999999879959999878776-8011212463334541167630257712102444444200
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
|+|+|+||||||||+|+|||. .++||++||+|+|+ |+..+|+.+.... ...... ... ..
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~----~l~~V~liD~D~~~~n~~~~l~~~~~~~-~~~~~~---~~~------------~~ 61 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAA----LLKNVVLADCDVDAPNLHLFLKPEIEEE-EDFIVG---GKK------------AV 61 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHH----HCCCCEEEEECCCCCCHHHHCCCCCCCC-EEEEEC---CCC------------CE
T ss_conf 899958998609999999999----7428719994189985777718765632-122304---653------------35
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 01488745775000123222210233322476510278203310133322221011233100111112311378887533
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL 167 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~~ 167 (265)
+.|......+....+. .....+.+....+++|||||||||||++..+.+++.+||.+++|++|+++|++++.+++
T Consensus 62 ~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~D~viiD~Ppg~~~~~~~al~~ad~~iiVttP~~~si~d~~r~i 136 (179)
T cd03110 62 IDPELCISCGLCGKLV-----TEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAV 136 (179)
T ss_pred ECHHHHHHCCCHHHHH-----HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 1506653235176889-----99999999986443799899818999757899999739949998199478999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 5777655432026774310020231253100112689998808520156267
Q gi|254780806|r 168 ETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip 219 (265)
++++++ +. ++ ++|+||++.+.....+ .+++.+.++.++++ .||
T Consensus 137 ~l~~~~----~~--~~-gvV~Nr~~~~~~~~~~-i~~~~~~~~vp~LG-~iP 179 (179)
T cd03110 137 ELVRHF----GI--PV-GVVINKYDLNDEIAEE-IEDYCEEEGIPILG-KIP 179 (179)
T ss_pred HHHHHC----CC--CE-EEEEECCCCCCCCHHH-HHHHHHHHCCCEEE-ECC
T ss_conf 999982----99--78-9999688788763489-99999980999898-387
No 39
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.5e-30 Score=197.76 Aligned_cols=236 Identities=23% Similarity=0.333 Sum_probs=191.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCC-
Q ss_conf 687499998088988889999999999998-7995999987877-6801121246333454116763025771210244-
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQ- 80 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~- 80 (265)
+++|+++|.+.|||+|-||+|.|+|+.++. .++.|+++|+|-| |+...+|+.++. .++.++..+++.+++....
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a---~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPA---FGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred HHCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCH---HHHHHHHCCHHHHHHHHHHH
T ss_conf 103289999605886668999999999864148738999768887612343078721---45898860978760787778
Q ss_pred ---CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf ---44442000148874577500012322221023332247651027820331013332222101123310011111231
Q gi|254780806|r 81 ---TAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEF 157 (265)
Q Consensus 81 ---~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~ 157 (265)
...++++++|+..++..+...... ...+| ...++..||+|++|.|-.+.+|+...|..||.++++++|+.
T Consensus 179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~---~~~~L----l~~~~~~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~sl 251 (366)
T COG4963 179 LLTRLASGLKLLAAPTELAKNYDLKTG---AVERL----LDLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSL 251 (366)
T ss_pred HHHCCCCCCEEECCCCCHHHHCCCCCC---HHHHH----HHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCH
T ss_conf 986168876330377445652153312---69999----99764028838971897662589999862884999963638
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHCCCCEEE
Q ss_conf 1378887533577765543202677431002023125310011268999880852015626786889-877737985799
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRI-SEAPSYGKPAII 236 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i-~~a~~~g~pv~~ 236 (265)
.|++.+.++++.+++++.. .+...+|+|||..+.... .+++.+.++.+.+. .+|.|... ..|.++|+++.+
T Consensus 252 ~slR~ak~lld~l~~~r~~----~~~p~lv~n~~~~~~~~~---~~dl~~~~~i~~~~-~~p~d~~~~~~A~n~g~~l~E 323 (366)
T COG4963 252 ASLRNAKELLDELKRLRPN----DPKPILVLNRVGVPKRPE---PSDLEEILGIESLL-VLPFDPALFGDAANNGRMLSE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHCCC----CCCCEEEEEECCCCCCCC---HHHHHHHHCCCHHC-CCCCCCHHHHHHHCCCCCCCC
T ss_conf 9899999999999973779----889568865227888999---99998884884001-366770544444206960222
Q ss_pred ECCCCHHHHHHHHHHHHHHHH
Q ss_conf 979998999999999999999
Q gi|254780806|r 237 YDLKCAGSQAYLKLASELIQQ 257 (265)
Q Consensus 237 ~~p~s~~a~~~~~la~el~~~ 257 (265)
.+|++++++++..++..+..+
T Consensus 324 ~~~~~~~~k~l~~la~~l~~~ 344 (366)
T COG4963 324 VDPGSPAAKALAQLAQSLGGR 344 (366)
T ss_pred CCCCCHHHHHHHHHHHHHCCC
T ss_conf 377875889999999985376
No 40
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=187.05 Aligned_cols=229 Identities=23% Similarity=0.314 Sum_probs=160.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCC-CCCCCEEEEEEC---------------
Q ss_conf 999980889888899999999999987-995999987877680112124633-345411676302---------------
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQGNASTGLGIELY-DRKYSSYDLLIE--------------- 70 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~q~~~~~~l~~~~~-~~~~ti~~~l~~--------------- 70 (265)
+|+|+ +|||+||||+|+-||..+..+ |++||+||+||..|++..||++.. +.-....+++..
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 69996-59976589999999999986489549999489999907762999987553008999999861478999553001
Q ss_pred -C---CCHH-HCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf -5---7712-10244444420001488-7457750001232222102333224765102782033101333222210112
Q gi|254780806|r 71 -E---KNIN-QILIQTAIPNLSIIPST-MDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA 144 (265)
Q Consensus 71 -~---~~l~-~~i~~~~~~~l~iipa~-~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~ 144 (265)
. .++. +.++ ..++++++.-+ +.-.+-.+ .. ....+++++|.....++|||||+||.+|+.++.+....
T Consensus 81 ~~~~~~di~~e~~~--e~~~~~LLvmGkie~~GeGC-~C---p~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~ 154 (255)
T COG3640 81 ENPLVSDLPDEYLV--ENGDIDLLVMGKIEEGGEGC-AC---PMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIE 154 (255)
T ss_pred CCCCHHHHHHHHHH--HCCCCCEEEECCCCCCCCCC-CC---HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCC
T ss_conf 37543351698850--06880079952556799743-16---27899999999975166748999633456665656325
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 33100111112311378887533577765543202677431002023125310011268999880852015626786889
Q gi|254780806|r 145 AADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRI 224 (265)
Q Consensus 145 aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i 224 (265)
.+|.+|+|+.|+.-|++.+.++.+..+. .+ ++..++|+|+++.. .+.+.......+.+++. +||+|..+
T Consensus 155 ~vD~vivVvDpS~~sl~taeri~~L~~e----lg--~k~i~~V~NKv~e~----e~~~~~~~~~~~~~vlg-~iP~d~~v 223 (255)
T COG3640 155 GVDLVIVVVDPSYKSLRTAERIKELAEE----LG--IKRIFVVLNKVDEE----EELLRELAEELGLEVLG-VIPYDPEV 223 (255)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHH----HC--CCEEEEEEEECCCH----HHHHHHHHHCCCCEEEE-ECCCCHHH
T ss_conf 7877999957877888889999999987----18--75499999503411----57777653227974899-71698788
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 877737985799979998999999999999999
Q gi|254780806|r 225 SEAPSYGKPAIIYDLKCAGSQAYLKLASELIQQ 257 (265)
Q Consensus 225 ~~a~~~g~pv~~~~p~s~~a~~~~~la~el~~~ 257 (265)
.++...|.|++.+. .+.+++.++++.+++.
T Consensus 224 ~~~dl~G~pl~~~~---~v~~~i~~I~~~l~~~ 253 (255)
T COG3640 224 VEADLKGEPLNEEP---EVLKEIEEIAERLIKL 253 (255)
T ss_pred HHCCCCCCCCCCCH---HHHHHHHHHHHHHHHC
T ss_conf 74225688421235---5578999999999850
No 41
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=99.96 E-value=7e-30 Score=193.95 Aligned_cols=180 Identities=23% Similarity=0.315 Sum_probs=139.7
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 9876874999980889888899999999999987995999987877-680112124633345411676302577121024
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILI 79 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~ 79 (265)
|++..-|+++|.|-|-|.||||+++|+|+++|+.||||||||.|.- ..++-.|.. .+...++.++|.+..+++|+|.
T Consensus 14 ~a~~e~K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~--~n~~~GLtn~L~g~~dl~~~i~ 91 (207)
T TIGR01007 14 GAEQEIKVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKS--QNKIKGLTNFLSGNTDLSDAIC 91 (207)
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECC--CCCCCCCHHHHCCCCCHHHHHH
T ss_conf 35787058998411058886241078899998568558887546586603678658--8876563332214545333420
Q ss_pred CCCC-CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH--HHHCCCCCCCC
Q ss_conf 4444-42000148874577500012322221023332247651027820331013332222101123--31001111123
Q gi|254780806|r 80 QTAI-PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA--ADSILVPLQCE 156 (265)
Q Consensus 80 ~~~~-~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a--ad~viip~~p~ 156 (265)
.|.. +||+||+|++-+-.-...+. ...+.+ |.+.+++.|||||||||| ++..+.+++.+ +|..|+|+..+
T Consensus 92 ~T~isenL~vi~sG~vPPNPt~LL~-----s~~F~~-l~e~~~~~fD~iiiDTPP-ig~V~DAai~a~~~d~~~LV~~A~ 164 (207)
T TIGR01007 92 ETNISENLDVITSGPVPPNPTELLQ-----SSNFKT-LIETLRKYFDYIIIDTPP-IGTVIDAAIIARAVDASILVTDAG 164 (207)
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHH-----HHHHHH-HHHHHHCCCCEEEEEECC-CCHHHHHHHHHHHHCCEEEEEECC
T ss_conf 2654678727517887877547888-----899999-999987168889995188-666788999998729779887225
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC
Q ss_conf 113788875335777655432026774310020231253
Q gi|254780806|r 157 FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN 195 (265)
Q Consensus 157 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~ 195 (265)
...-+.+.+..+.+++. +. .++|||+|+++...
T Consensus 165 ~~~k~~v~KAK~~LEq~----G~--~~LGvvLNK~d~s~ 197 (207)
T TIGR01007 165 KIKKREVKKAKEQLEQA----GS--KFLGVVLNKVDISV 197 (207)
T ss_pred CCCHHHHHHHHHHHHHH----CC--CEEEEEECCCCCCC
T ss_conf 32646789999999861----78--41158888825765
No 42
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=187.01 Aligned_cols=205 Identities=23% Similarity=0.337 Sum_probs=148.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 68749999808898888999999999999879959999878776-80112124633345411676302577121024444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
+..++|+|.|+|||+||||+++|||.++|++|+||++||+|..+ +...+|+.+.. ..+.+.+.+.. +.+++....
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~---~g~~~~~~g~~-~~~~~~~~~ 130 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENL---PGLTELLAGEA-LEPVIQHDG 130 (265)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCC---CCCCCCCCCCC-CCCCEECCC
T ss_conf 66618999758998756899999999999639938999674669863554089865---56541137871-143220266
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH-HHHHCCCCCCCCCHHHH
Q ss_conf 44200014887457750001232222102333224765102782033101333222210112-33100111112311378
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA-AADSILVPLQCEFFALE 161 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~-aad~viip~~p~~~s~~ 161 (265)
..++++++... ....+...-....+.++|.+..|.+||||||||||+.+..-...+. ..|.+++|++|......
T Consensus 131 ~~~lsi~~~~~-----~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~~g~viVt~p~~~~~~ 205 (265)
T COG0489 131 IKVLSILPLGP-----VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPDGVVIVTTPGKTALE 205 (265)
T ss_pred CCEEEEEECCC-----CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 55047883288-----9989467763389999999974568888999699986427778875138859999667735599
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 8875335777655432026774310020231253100-112689998808520156267868898
Q gi|254780806|r 162 GLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS-QQVVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~-~~~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
.+.+.+++++.. +.+++|+|.||........ .---+...+.|+ +.+. .+|.+....
T Consensus 206 ~v~ka~~~~~~~------~~~vlGvv~Nm~~~~~~~~~~g~~~~~~~~~~-~~~g-~~p~~~~~~ 262 (265)
T COG0489 206 DVKKAIDMLEKA------GIPVLGVVENMSYFICPRCGEGGGEKYAERYG-PYLG-SIPLDPSAR 262 (265)
T ss_pred HHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCCC-CCCCCHHHH
T ss_conf 999999999874------99347999668666665557885233566511-1026-688674544
No 43
>PRK11519 tyrosine kinase; Provisional
Probab=99.96 E-value=6.2e-29 Score=188.41 Aligned_cols=179 Identities=21% Similarity=0.329 Sum_probs=138.4
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 9876874999980889888899999999999987995999987877-680112124633345411676302577121024
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILI 79 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~ 79 (265)
+.++.+|||.|.|.-.|.||||+++|||..+|+.|+||||||+|.. +.++.+|+... ..++.+++.+..++.++|.
T Consensus 521 ~~~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~---~~GLs~~L~g~~~~~~~i~ 597 (720)
T PRK11519 521 MMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNN---VNGLSEILIGQGDITTAAK 597 (720)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCC---CCCHHHHCCCCCCHHHHCC
T ss_conf 4688876799970899997899999999999837991999938777701677539999---9985998079997899703
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCH--HHHHHHCCCCCCCCC
Q ss_conf 444442000148874577500012322221023332247651027820331013332222101--123310011111231
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNA--MAAADSILVPLQCEF 157 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~a--l~aad~viip~~p~~ 157 (265)
++..+|||+||++.....-...+.+ .++.+.+ ..++.+||||||||||-.. .+... -..+|.++.|+....
T Consensus 598 ~~~~~~l~vl~~G~~~pnp~elL~s-----~~~~~ll-~~l~~~yD~IIiDtpPv~~-v~Da~~la~~aD~~l~Vvr~g~ 670 (720)
T PRK11519 598 PTSIANFDLIPRGQVPPNPSELLMS-----ERFAELV-AWASKNYDLVLIDTPPILA-VTDAAIVGRHVGTTLMVARYAV 670 (720)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHCC-----HHHHHHH-HHHHHHCCEEEEECCCCCC-CHHHHHHHHHCCEEEEEEECCC
T ss_conf 5798998997699999498998387-----5999999-9998529999993999652-3589999997897999998995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC
Q ss_conf 13788875335777655432026774310020231253
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN 195 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~ 195 (265)
.....+...++.+.. .+.++.|+|+|.++++.
T Consensus 671 t~~~~v~~a~~~l~~------~~~~v~G~VlN~v~~~~ 702 (720)
T PRK11519 671 NTLKEVETSLSRFEQ------NGIPVKGVILNSIFRRA 702 (720)
T ss_pred CCHHHHHHHHHHHHH------CCCCEEEEEECCCCCCC
T ss_conf 789999999999996------89974899988976665
No 44
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=187.03 Aligned_cols=239 Identities=24% Similarity=0.358 Sum_probs=178.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECC-----CCHHHCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025-----7712102444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEE-----KNINQILIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~-----~~l~~~i~~~ 81 (265)
|.|+|. +|||.||||++.|+|.+||..|+||++|-|||.++.|..|.- -...+|+.|.+.+. ..+++.+. +
T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llg--g~~ipTVld~lre~~~~e~~~ledvi~-~ 77 (278)
T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLG--GKAIPTVLDTLREKGEVEDLELEDVIF-T 77 (278)
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHC--CCCCCHHHHHHHHCCCCCCCCHHHHEE-C
T ss_conf 379996-278767312677899999972981799747987632777747--866656999998618644588778212-0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf 444200014887457750001232222102333224765102782033101333222210112------33100111112
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC 155 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p 155 (265)
...++.++-|+..-.+....-.........|.+ |. ...+..|||++|. +++..+..++ -||++.+|+.-
T Consensus 78 Gf~gv~CVEsGGPepGvGCAGRGVitai~~Le~-lg-af~~~~DvviyDV---LGDVVCGGFAmPiReg~AdeiyIVtSg 152 (278)
T COG1348 78 GFGGVKCVESGGPEPGVGCAGRGVITAINLLEE-LG-AFEEDLDVVIYDV---LGDVVCGGFAMPIREGYADEIYIVTSG 152 (278)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HC-CCCCCCCEEEEEC---CCCEEECCEEEEHHCCCCCEEEEEECC
T ss_conf 678537742599899988465119999999998-18-7301287899953---577347460002002666379999568
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI 235 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~ 235 (265)
+++++..+.++.+-+.++..+.+. +.-|++-|.= +....++++..+.+.+|.+++. .||++..+++|-.+|++|.
T Consensus 153 e~MalYAANNI~kgi~k~a~~~~~--rLgGiIcNsR--~~~~e~e~v~~fa~~igt~li~-~vPr~~ivq~aE~~~kTvi 227 (278)
T COG1348 153 EMMALYAANNIAKGIRKYAKTGGV--RLGGIICNSR--SVDRERELVEAFAERLGTQLIH-FVPRDNIVQKAELNGKTVI 227 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEECCC--CCCCHHHHHHHHHHHHCCCEEE-ECCCHHHHHHHHHCCCCHH
T ss_conf 358999988999999998733796--3145774577--7643799999999984885276-3351278899987486611
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999899999999999999998
Q gi|254780806|r 236 IYDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 236 ~~~p~s~~a~~~~~la~el~~~~~ 259 (265)
++.|+|..++.|++||+.+++.++
T Consensus 228 e~~P~s~~a~~yr~LA~~I~~n~~ 251 (278)
T COG1348 228 EYAPDSNQAEEYRELAKKILENEK 251 (278)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 318462489999999999983778
No 45
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=8e-29 Score=187.77 Aligned_cols=158 Identities=23% Similarity=0.346 Sum_probs=116.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 9999808898888999999999999879959999878776-801121246333454116763025771210244444420
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
||+|.|+||||||||+++|||.+|+++|+||+++|+|..+ |++. ++.+
T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~di~gpsip~---------------~~rG---------------- 49 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPK---------------MWRG---------------- 49 (169)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCE---------------EEEC----------------
T ss_conf 989974999881999999999999987997899971379997550---------------1204----------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC--CCCHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 0014887457750001232222102333224765102782033101333222--21011233100111112311378887
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLL--TMNAMAAADSILVPLQCEFFALEGLS 164 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~--~~~al~aad~viip~~p~~~s~~~~~ 164 (265)
+.....+.+++....|+++||+|||+|||.|+. +......+|.+++|++|+..|+.++.
T Consensus 50 -------------------p~~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~~lt~~~~~~~d~~IvVTTP~~~s~~Da~ 110 (169)
T cd02037 50 -------------------PMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVR 110 (169)
T ss_pred -------------------HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf -------------------7389999999985254667889996899987077879875056747999469588999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEE---CC-----CHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 5335777655432026774310020231---25-----3100112689998808520156267868
Q gi|254780806|r 165 QLLETVEEVRRTVNSALDIQGIILTMFD---SR-----NSLSQQVVSDVRKNLGGKVYNTVIPRNV 222 (265)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~iv~N~~~---~~-----~~~~~~~~~~l~~~~~~~v~~~~Ip~~~ 222 (265)
+.++++++. +.++.|+|.||.. +. .-....-.+++.+.++.+++. .||.|.
T Consensus 111 r~i~~~~~~------~i~i~GvVeNMs~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg-~IP~dp 169 (169)
T cd02037 111 KAIDMFKKV------NIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLG-KIPLDP 169 (169)
T ss_pred HHHHHHHHC------CCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE-ECCCCC
T ss_conf 999999975------99707999879666079999735278884499999995999898-728999
No 46
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.96 E-value=1.7e-28 Score=185.81 Aligned_cols=179 Identities=18% Similarity=0.274 Sum_probs=138.3
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 9876874999980889888899999999999987995999987877-680112124633345411676302577121024
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILI 79 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~ 79 (265)
+.++..|||.|.|.--|.||||+|+|||..+|+.|+||+|||||.. +.++..|+... ..++.+++.+..++.++|.
T Consensus 526 ~~~~~~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~---~~GLs~~L~g~~~~~~~i~ 602 (726)
T PRK09841 526 MMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSN---EHGLSEYLAGKDELNKVIQ 602 (726)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCC---CCCHHHHHCCCCCHHHHCC
T ss_conf 2688886899977999997799999999999847995999828877710776159999---9877998389998899330
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHH--HHHHHCCCCCCCCC
Q ss_conf 4444420001488745775000123222210233322476510278203310133322221011--23310011111231
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAM--AAADSILVPLQCEF 157 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al--~aad~viip~~p~~ 157 (265)
++..+|||+||++.....-...+.+ .++.+.| ..++.+||||||||||-+. .+...+ ..+|.++.|+....
T Consensus 603 ~~~~~~ldvl~aG~~p~nP~elL~s-----~~~~~ll-~~l~~~yD~IIiDtPPvl~-v~Da~~l~~~~D~~l~Vvr~g~ 675 (726)
T PRK09841 603 HFGKGGFDVITRGQVPPNPSELLMR-----DRMRQLL-EWANDHYDLVIVDTPPMLA-VSDAAVVGRSVGTSLLVARFGL 675 (726)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHCC-----HHHHHHH-HHHHHCCCEEEEECCCCCC-CCHHHHHHHHCCEEEEEEECCC
T ss_conf 2798998998289999798999587-----6999999-9998139999991999653-4159999997895999997996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC
Q ss_conf 13788875335777655432026774310020231253
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN 195 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~ 195 (265)
.....+.+.++.+.. .+.++.|+|+|.++.+.
T Consensus 676 T~~~~~~~a~~~l~~------~~~~v~G~vlN~v~~~~ 707 (726)
T PRK09841 676 NTAKEVSLSMQRLEQ------AGVNIKGAILNGVIKRA 707 (726)
T ss_pred CCHHHHHHHHHHHHH------CCCCEEEEEECCCCCCC
T ss_conf 889999999999997------89975899982886566
No 47
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.95 E-value=2.8e-28 Score=184.54 Aligned_cols=104 Identities=59% Similarity=0.872 Sum_probs=93.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
+|+|.|.||||||||+++|||+.+++.|+||++||+|||
T Consensus 1 vi~~~n~KGGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-----------------------------------------
T ss_conf 999973899876899999999999977992999977988-----------------------------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 01488745775000123222210233322476510278203310133322221011233100111112311378887533
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL 167 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~~ 167 (265)
||||||||||+.+..+.+++.+||++++|+.|+.++++++.+++
T Consensus 40 ------------------------------------yD~iiIDtpp~~~~~~~~al~~aD~viiP~~p~~~~~~~~~~~~ 83 (104)
T cd02042 40 ------------------------------------YDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred ------------------------------------CCEEEEECCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
T ss_conf ------------------------------------88899979499989999999978999998369889999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 5777655432026774310020
Q gi|254780806|r 168 ETVEEVRRTVNSALDIQGIILT 189 (265)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~iv~N 189 (265)
+.+... +..++.....++++|
T Consensus 84 ~~~~~~-~~~~~~~~~~~~v~~ 104 (104)
T cd02042 84 ETLILE-DRLNPDLDILGILPT 104 (104)
T ss_pred HHHHHH-HHHCCCCEEEEEEEC
T ss_conf 999999-976999889999809
No 48
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.95 E-value=1.9e-27 Score=179.72 Aligned_cols=120 Identities=28% Similarity=0.421 Sum_probs=96.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
||+|.|+||||||||+++|||.+|+++|+||+++|+|... .|+
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~------------------------------------an~- 43 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL------------------------------------ANL- 43 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC------------------------------------CCC-
T ss_conf 9899649999839999999999999789969999898999------------------------------------657-
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 01488745775000123222210233322476510278203310133322221011233100111112311378887533
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL 167 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~~ 167 (265)
+|||||||+|||.+..+...+.+||.+++|++||+.|+.+++.++
T Consensus 44 -----------------------------------~~D~viiD~~aG~~~~~~~~~~~ad~~lvV~tpeptSi~DAYalI 88 (139)
T cd02038 44 -----------------------------------DYDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALI 88 (139)
T ss_pred -----------------------------------CCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf -----------------------------------999999948999877899999958957999589706799999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHH
Q ss_conf 57776554320267743100202312531001126899
Q gi|254780806|r 168 ETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDV 205 (265)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l 205 (265)
+.+.. ..+ ....++|+||++.. ...++..+.+
T Consensus 89 K~l~~---~~~--~~~~~lvvN~v~s~-~ea~~~~~~l 120 (139)
T cd02038 89 KKLAK---QLR--VLNFRVVVNRAESP-KEGKKVFKRL 120 (139)
T ss_pred HHHHH---HCC--CCCEEEEEECCCCH-HHHHHHHHHH
T ss_conf 99999---639--99759999568999-9999999999
No 49
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.95 E-value=1.5e-26 Score=174.57 Aligned_cols=234 Identities=21% Similarity=0.231 Sum_probs=153.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEE-E--EEECC-CC--------
Q ss_conf 4999980889888899999999999987995999987877-6801121246333454116-7--63025-77--------
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSY-D--LLIEE-KN-------- 73 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~-~--~l~~~-~~-------- 73 (265)
+-|+|.|+|||+||||+++|||..|+.. +|++++|+|.- .|+..+|+.+..+...-+. . .+..+ +.
T Consensus 2 m~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~v 80 (284)
T COG1149 2 MQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAEV 80 (284)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCHHHCCCCCCHHHH
T ss_conf 2799963688777022899999983665-224777657789986167445011356778750460375774301726876
Q ss_pred -HHHCCCCCCCCCEEECC------------CCCC---------------CCCCC-C----CCCCCCCCCHHHHHHHHHHH
Q ss_conf -12102444444200014------------8874---------------57750-0----01232222102333224765
Q gi|254780806|r 74 -INQILIQTAIPNLSIIP------------STMD---------------LLGIE-M----ILGGEKDRLFRLDKALSVQL 120 (265)
Q Consensus 74 -l~~~i~~~~~~~l~iip------------a~~~---------------~~~~~-~----~l~~~~~~~~~l~~~l~~~l 120 (265)
-.++++--..++..+.| ...+ ..... . .+.-.......|.+.+....
T Consensus 81 C~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~~~~~g~~li~g~l~vGe~~s~~lV~~~kk~a 160 (284)
T COG1149 81 CRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA 160 (284)
T ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 78880897378860028020267663332478765554320003899987689963688744678444513789998755
Q ss_pred HCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 10278203310133322221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 121 ~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.+..|++|||+|||.+.-...++..+|++|+|++|.++++.++.++++..+.++. + .++|+||++.... +
T Consensus 161 ~E~~~~~IIDsaaG~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~i----p---~~iViNr~~~g~s---~ 230 (284)
T COG1149 161 KELADLLIIDSAAGTGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGI----P---TGIVINRYNLGDS---E 230 (284)
T ss_pred HHHCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC----C---EEEEEECCCCCCH---H
T ss_conf 6532125885799789717776416877999816885236689999999998399----5---4999966777720---8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 2689998808520156267868898777379857999799989999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQAYLKLASELI 255 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~la~el~ 255 (265)
+++..+..|.+++. .||+|..+.++..+|.|+.. ++++.+..+...+.++.
T Consensus 231 -ie~~~~e~gi~il~-~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~ 281 (284)
T COG1149 231 -IEEYCEEEGIPILG-EIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLK 281 (284)
T ss_pred -HHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHH
T ss_conf -99988873997268-78864258999857885313--55268899999999987
No 50
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.94 E-value=1e-27 Score=181.29 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=112.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEE----EEECCCCHHHCCCCCC
Q ss_conf 499998088988889999999999998799599998787768011212463334541167----6302577121024444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYD----LLIEEKNINQILIQTA 82 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~----~l~~~~~l~~~i~~~~ 82 (265)
|+| |.++||||||||+|+++|..||+.|+|||+||.||+.|++..|+....... +... +...+-+....+.+ .
T Consensus 1 r~i-~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDPahsLsd~f~~~~~~~~-~~v~~~~nL~a~eid~~~~~~~-~ 77 (254)
T cd00550 1 RYI-FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGP-TPVKGVENLSAMEIDPQEALEE-Y 77 (254)
T ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCC-CEECCCCCCEEEEECHHHHHHH-H
T ss_conf 989-996898554899999999999968994999958986448898488667887-1103668845787288999999-9
Q ss_pred CCC-EEECCCCCCCCCCCC----CC-CCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCC--------CHHH-
Q ss_conf 442-000148874577500----01-23222210233322476510278203310133322---221--------0112-
Q gi|254780806|r 83 IPN-LSIIPSTMDLLGIEM----IL-GGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL---LTM--------NAMA- 144 (265)
Q Consensus 83 ~~~-l~iipa~~~~~~~~~----~l-~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~---~~~--------~al~- 144 (265)
+.. .+.+.+.......+. .+ ....+....+.+.+...-+++||||||||||.-.. +.. ..|.
T Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~~l~~~~~~L~d 157 (254)
T cd00550 78 RQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSD 157 (254)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHCCC
T ss_conf 99999988632255668888999863985899999999999976069988998899856799875156999999985379
Q ss_pred -HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC-----------HHHHHHHHHHHHHHC
Q ss_conf -331001111123113788875335777655432026774310020231253-----------100112689998808
Q gi|254780806|r 145 -AADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN-----------SLSQQVVSDVRKNLG 210 (265)
Q Consensus 145 -aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~-----------~~~~~~~~~l~~~~~ 210 (265)
....+++|++|+.+++..+.|++..++.. ++++.++|+||+-+.. ..+++.++++++.|+
T Consensus 158 ~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~------~i~v~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~ 229 (254)
T cd00550 158 PERTSFRLVCIPEKMSLYETERAIQELAKY------GIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFS 229 (254)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHC------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 565589999778721699999999999977------999897999588087768899999999999999999998705
No 51
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.94 E-value=5.6e-26 Score=171.15 Aligned_cols=237 Identities=20% Similarity=0.227 Sum_probs=169.8
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECC------CCHH
Q ss_conf 8768749999808898888999999999999879959999878776801121246333454116763025------7712
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEE------KNIN 75 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~------~~l~ 75 (265)
+.|++|+|+|. +|||.||||++.|++.+||++|+||++|-|||.++.|..|.- .....|+.|.+... ..+.
T Consensus 27 ~~k~~~~IAiY-GKGGIGKSTts~NlsAAlA~~GkkVm~IGCDPKaDSTrlLlg--G~~~~TVLd~~~~~~~~~e~v~~~ 103 (329)
T cd02033 27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFG--GKACPTIIETSAKKKLAGEEVQIG 103 (329)
T ss_pred CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCC--CCCCCHHHHHHHHCCCCCCCCCHH
T ss_conf 75445499997-688435616889999999977996999788884603341058--988840999998728864434250
Q ss_pred HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH------HHHC
Q ss_conf 1024444442000148874577500012322221023332247651027820331013332222101123------3100
Q gi|254780806|r 76 QILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA------ADSI 149 (265)
Q Consensus 76 ~~i~~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a------ad~v 149 (265)
+.+.+. .|+.++-++..-.+....-.........|.+ +. ....++|||++|. +++..+..+++ ||.+
T Consensus 104 dv~~~g--~Gv~CvEsGGPEPGvGCAGRGIItai~lLe~-lg-~~~~d~D~V~yDV---LGDVVCGGFAmPiR~g~A~ev 176 (329)
T cd02033 104 DVCFKR--DGVFAMELGGPEVGRGCGGRGIIHGFELLEK-LG-FHDWDFDYVLLDF---LGDVVCGGFGLPIARDMAQKV 176 (329)
T ss_pred HEEECC--CCEEEEECCCCCCCCCCCCCCHHHHHHHHHH-CC-CCCCCCCEEEEEC---CCCEEECCCCCCCCCCCCCEE
T ss_conf 178625--9988986679999876788730136678776-37-7525899999922---453566463353356876289
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11111231137888753357776554320267743100202312531001126899988085201562678688987773
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPS 229 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~ 229 (265)
+||+.-+++|+..+.++.+.+..++...+ +.++.|+|.|+-+.. .+ .+.+.+..|.+++. .||++..+++...
T Consensus 177 yIVtSgE~MalyAANNI~~~i~~~a~~gg-~vrl~GlI~N~~~~~----~e-~e~fa~~~g~~~l~-~vP~d~~iRr~~~ 249 (329)
T cd02033 177 IVVGSNDLQSLYVANNVCNAVEYFRKLGG-NVGVAGMVINKDDGT----GE-AQAFAAHAGIPILA-AIPADEELRRKSA 249 (329)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCC----HH-HHHHHHHCCCCEEE-ECCCCHHHHHHHH
T ss_conf 99967808899988789999999986389-710115986068872----49-99999971995799-6378778876543
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 7985799979998999999999999999
Q gi|254780806|r 230 YGKPAIIYDLKCAGSQAYLKLASELIQQ 257 (265)
Q Consensus 230 ~g~pv~~~~p~s~~a~~~~~la~el~~~ 257 (265)
+...+ +.|.++.+.-|+.||+.+.+.
T Consensus 250 ~y~iv--~~p~~~~~~~f~~LA~~i~~~ 275 (329)
T cd02033 250 AYQIV--GRPGTTWGPLFEQLATNVAEA 275 (329)
T ss_pred HCCCC--CCCCCHHHHHHHHHHHHHHHC
T ss_conf 02603--487615899999999976127
No 52
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.94 E-value=1.2e-26 Score=174.97 Aligned_cols=173 Identities=20% Similarity=0.277 Sum_probs=133.4
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 76874999980889888899999999999987995999987877-68011212463334541167630257712102444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+..-|.++|+|...|.||||+++|||..+|+.|+||++||+|.- ..+..+|+++.. .++.+++.+..++.+++..+
T Consensus 100 ~~~~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f~l~~~---~GLs~vL~g~~~l~~i~~~~ 176 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQ---RGLSDILAGRSDLEVITHIP 176 (274)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCC---CCHHHHHCCCCCHHHEEECC
T ss_conf 788838999689999989999999999999679919999588888447797599997---68788845999889905158
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf 44420001488745775000123222210233322476510278203310133322-22101123310011111231137
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL-LTMNAMAAADSILVPLQCEFFAL 160 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~-~~~~al~aad~viip~~p~~~s~ 160 (265)
..+||+++|++.....-...+. ..++.+.+ ..++.+||||||||||-... -....-..+|.+++|+..+....
T Consensus 177 ~~~nL~VLpaG~~ppnP~eLL~-----s~~~~~ll-~~l~~~yD~IIiDTPPvl~~sDA~ila~~aDg~LlVvR~~~T~~ 250 (274)
T TIGR03029 177 ALENLSVLPAGAIPPNPQELLA-----RPAFTDLL-NKVMGDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNETRL 250 (274)
T ss_pred CCCCEEEEECCCCCCCHHHHHH-----HHHHHHHH-HHHHHHCCEEEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCH
T ss_conf 9899789969999989799873-----58999999-99984099999938986554349999986897999996898889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 888753357776554320267743100202
Q gi|254780806|r 161 EGLSQLLETVEEVRRTVNSALDIQGIILTM 190 (265)
Q Consensus 161 ~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~ 190 (265)
..+.+.++.++.. +.++.|+|+|+
T Consensus 251 ~~l~~a~~~L~~~------g~~VlGvVLNq 274 (274)
T TIGR03029 251 HELTSLKEHLSGV------GVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHHHC------CCCEEEEEECC
T ss_conf 9999999999977------99668998487
No 53
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.94 E-value=7.4e-27 Score=176.29 Aligned_cols=172 Identities=21% Similarity=0.170 Sum_probs=97.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEC---CCCHHHCCCC---CC
Q ss_conf 99980889888899999999999987995999987877680112124633345411676302---5771210244---44
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIE---EKNINQILIQ---TA 82 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~---~~~l~~~i~~---~~ 82 (265)
|.|.++||||||||+|+|+|.++|+.|+|||+||+||+.+++..+.. ++.+.... +......... ..
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~-------~L~~~~~~~~~e~~~~~~~~~v~~~~ 73 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLP-------NLSDAFIVEDPEIAPNLYREEVDATR 73 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98997899661999999999999968994999958987665323479-------86513588876667999987501666
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCHHHHH--HHCCCCCCCCC
Q ss_conf 442000148874577500012322221023332247651027820331013332---2221011233--10011111231
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN---LLTMNAMAAA--DSILVPLQCEF 157 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~---~~~~~al~aa--d~viip~~p~~ 157 (265)
.......+...........+. ..+....+.+........+||||||||||+-. .+....|... ..+++|++|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~p-g~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~~L~d~~~t~~~lVt~Pe~ 152 (217)
T cd02035 74 RVERAWGGEGGLMLELAAALP-GIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEK 152 (217)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 533311001145677761599-7899999999999985489988998289855699986788724888767999957762
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 1378887533577765543202677431002023125
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSR 194 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~ 194 (265)
.++..+.+++..++.. ++.+.++|+||+-|.
T Consensus 153 ~~~~et~r~~~~L~~~------gi~v~~vVvN~v~p~ 183 (217)
T cd02035 153 LPLYETERAITELALY------GIPVDAVVVNRVLPA 183 (217)
T ss_pred CHHHHHHHHHHHHHHC------CCCCCEEEEECCCCC
T ss_conf 1799999999999977------998898989588278
No 54
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.92 E-value=7.2e-25 Score=164.68 Aligned_cols=171 Identities=25% Similarity=0.381 Sum_probs=128.9
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECC-CCHHHCC
Q ss_conf 87687499998088988889999999999998-7995999987877-6801121246333454116763025-7712102
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEE-KNINQIL 78 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~-~~l~~~i 78 (265)
.+++.|||.|.|...|.||||+++|||.++|+ .|+||++||+|.. ++++.+|+.... .++.+++.+. .++.+++
T Consensus 31 ~~~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~---~Gl~d~L~~~~~~l~~~i 107 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAE---PGLSDCLLDPVLDLADVL 107 (207)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCC---CCHHHHHCCCCCCHHHHE
T ss_conf 46788099997899999889999999999997249859999535789971001388999---985677438998756723
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCEEEECCCCCCC-CCCHHHHHHHCCCCCCC
Q ss_conf 44444420001488745775000123222210233322476510278--2033101333222-21011233100111112
Q gi|254780806|r 79 IQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFS--YIFLDCPPSFNLL-TMNAMAAADSILVPLQC 155 (265)
Q Consensus 79 ~~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD--~IiiD~pp~~~~~-~~~al~aad~viip~~p 155 (265)
.++..++++++|++.........+. ..++.+.+ ..++++|| |||||+||-+..- .......+|.+++|+..
T Consensus 108 ~~~~~~~l~vlpag~~~~~~~~ll~-----s~~~~~li-~~lr~~yd~~~VIiDtPPvl~~~Da~~la~~~D~vllVvr~ 181 (207)
T TIGR03018 108 VPTNIGRLSLLPAGRRHPNPTELLA-----SQRMRSLL-HELARRYPDRIIIIDTPPLLVFSEARALARLVGQIVLVVEE 181 (207)
T ss_pred ECCCCCCEEEEECCCCCCCHHHHHH-----HHHHHHHH-HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEEC
T ss_conf 4268875557516898996676542-----69999999-99997379657998389622323699999968969999979
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3113788875335777655432026774310020
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILT 189 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N 189 (265)
+......+.+.++.++ +.+++|+|+|
T Consensus 182 ~~t~~~~v~~a~~~L~--------~~~vlG~VlN 207 (207)
T TIGR03018 182 GRTTQEAVKEALSALE--------SCKVLGVVLN 207 (207)
T ss_pred CCCCHHHHHHHHHHHC--------CCCEEEEEEC
T ss_conf 9878999999999866--------8980699969
No 55
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.90 E-value=5.6e-24 Score=159.46 Aligned_cols=105 Identities=32% Similarity=0.459 Sum_probs=91.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 999980889888899999999999987-9959999878776801121246333454116763025771210244444420
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
||+|.|.|||+||||+|+|+|++||+. |+||+++|+|+|. |-
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqf------Gd------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GD------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC------CC-------------------------------
T ss_conf 98997289986689999999999998419938999654677------99-------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
|||++|+|++++.++..++..||.++++++|+..+++++.++
T Consensus 44 --------------------------------------d~VVvD~~~~~~~~~~~al~~ad~i~lv~~~~lp~lrn~kr~ 85 (106)
T cd03111 44 --------------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRL 85 (106)
T ss_pred --------------------------------------CEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHH
T ss_conf --------------------------------------789991865538899999986797999806774899979999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 357776554320267743100202
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTM 190 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~ 190 (265)
++.++.+... ......+|+||
T Consensus 86 l~~l~~l~~~---~~~ki~lVvNR 106 (106)
T cd03111 86 LELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred HHHHHHCCCC---CCCCEEEEECC
T ss_conf 9999984999---73656998579
No 56
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=99.83 E-value=6.9e-21 Score=141.45 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=100.5
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEE---EEEECCCCHHHCCCC---
Q ss_conf 49999808898888999999999999879959999878776801121246333454116---763025771210244---
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSY---DLLIEEKNINQILIQ--- 80 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~---~~l~~~~~l~~~i~~--- 80 (265)
|+| |.++||||||||+++.+|..+|+.|+|||+|-.||--|++-.|+....+.+..+. ++..-+-+....+..
T Consensus 2 r~i-~~~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDPAhsL~D~~~~~~g~~pt~V~~~~nL~a~eiD~~~~~~~~~~ 80 (304)
T pfam02374 2 RWI-FFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLSDSFNQKFGHEPTKIKGVENLSAMEIDPQMELEEYRG 80 (304)
T ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEECHHHHHHHHHH
T ss_conf 199-9957985748999999999999589929999469721488984886799961515889827987278999999999
Q ss_pred CCCCCE-EECCCCCCCCCC-CCCCC--CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC----------------
Q ss_conf 444420-001488745775-00012--3222210233322476510278203310133322221----------------
Q gi|254780806|r 81 TAIPNL-SIIPSTMDLLGI-EMILG--GEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM---------------- 140 (265)
Q Consensus 81 ~~~~~l-~iipa~~~~~~~-~~~l~--~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~---------------- 140 (265)
.....+ .+.+.. ...+. ...+. ...+....+.++....-.++||+|++||||+-..+-.
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~PG~~E~~al~~i~~~~~~~~yD~VV~DtaPTGhtLrlL~lP~~l~~~l~~~~~ 159 (304)
T pfam02374 81 EVQDPINAVLGAD-MLEGILAEELSSLPGIDEIASFDEFKKYMDEGEYDVVIFDTAPTGHTLRLLSLPTVLSWYLEKIIK 159 (304)
T ss_pred HHHHHHHHHHCHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999998651221-266789999836998999999999999997178876996689817799886168999999999998
Q ss_pred ---------------------------------------CHHHH--HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ---------------------------------------01123--3100111112311378887533577765543202
Q gi|254780806|r 141 ---------------------------------------NAMAA--ADSILVPLQCEFFALEGLSQLLETVEEVRRTVNS 179 (265)
Q Consensus 141 ---------------------------------------~al~a--ad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~ 179 (265)
..|.- -..+++|+.|+..++.-+.|+...++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~f~lV~~pe~~~i~Et~R~~~~L~~~------ 233 (304)
T pfam02374 160 LKNKIGPLAKPFKGPMGGSCLPEALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKY------ 233 (304)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC------
T ss_conf 99988999887740135676278999999999999999998549897499998379843799999999999977------
Q ss_pred CCCCCCCCCCEEECC
Q ss_conf 677431002023125
Q gi|254780806|r 180 ALDIQGIILTMFDSR 194 (265)
Q Consensus 180 ~~~~~~iv~N~~~~~ 194 (265)
++++-++|+|++-|.
T Consensus 234 ~i~v~~vvvNrvlp~ 248 (304)
T pfam02374 234 GIDVDAVIVNQVLPE 248 (304)
T ss_pred CCCCCEEEECCCCCC
T ss_conf 998897988077888
No 57
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246 This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=99.76 E-value=2.9e-18 Score=126.11 Aligned_cols=203 Identities=21% Similarity=0.292 Sum_probs=132.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCCCEEEEEEC--------CCCHHHC
Q ss_conf 4999980889888899999999999987995999987877680112-124633345411676302--------5771210
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTG-LGIELYDRKYSSYDLLIE--------EKNINQI 77 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~-l~~~~~~~~~ti~~~l~~--------~~~l~~~ 77 (265)
|+|||. +|||.|||.++.||.+.+|.+|+|||+|-|||..+.++. ||-- .-+|+.|++.. +..++++
T Consensus 1 r~iAiY-GKGG~GKSFtttNLs~~~A~mgkRVL~lGCDPKhDst~~LFGGi---slPT~~ev~~ekk~agreEev~~~dv 76 (355)
T TIGR02016 1 RIIAIY-GKGGIGKSFTTTNLSAKLALMGKRVLQLGCDPKHDSTSALFGGI---SLPTVIEVFAEKKEAGREEEVKVSDV 76 (355)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 958897-48898667898999999997468235405789733222136786---67508899999865187320566117
Q ss_pred CCCCCCCCE----EEC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HH
Q ss_conf 244444420----001-4887457750001232222102333224765102782033101333222210112------33
Q gi|254780806|r 78 LIQTAIPNL----SII-PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AA 146 (265)
Q Consensus 78 i~~~~~~~l----~ii-pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aa 146 (265)
+.++...|. +=+ -+++... -..=-.........|.++=. .-| ++|||+.|. +|+..+-.+. .|
T Consensus 77 ~Fk~~I~~~~~~vyg~ElGGPeVG-RGCGGRGIi~GFd~LEKlG~-~~W-~~D~vlmDF---LGDVVCGGFatPlaRsla 150 (355)
T TIGR02016 77 VFKRDIMNFAATVYGIELGGPEVG-RGCGGRGIIFGFDLLEKLGL-FEW-ELDFVLMDF---LGDVVCGGFATPLARSLA 150 (355)
T ss_pred EEECCCCCCCCCEEEEEECCCCCC-CCCCCCCCCCCHHHHHHCCC-CCC-CHHHEEEEC---CCCEEECCCCCHHHHHHH
T ss_conf 872336889874578881787115-54687531010256655274-400-020002000---586775664431235320
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 10011111231137888753357776554320267743100202312531001126899988085201562678688987
Q gi|254780806|r 147 DSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISE 226 (265)
Q Consensus 147 d~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~ 226 (265)
..||+++.=|..|+..+.++-+..+=++. ++-..+++|+|+||=|- +.+.. ...+..+.+|+. .||.|..++.
T Consensus 151 eeVi~~~sNDrQSly~aNNic~A~~YFr~-~GGr~~llGlvvNrDDG-sG~A~----~fA~~~gipvLa-~iP~d~~~Rd 223 (355)
T TIGR02016 151 EEVIVVTSNDRQSLYVANNICSAAEYFRK-LGGRSKLLGLVVNRDDG-SGVAE----AFAKEVGIPVLA-KIPLDRKVRD 223 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEEEECCCC-CCHHH----HHHHHCCCCEEE-ECCCCCHHCC
T ss_conf 24377613743688888669889999986-18860467889864688-71898----989870993475-2676500100
No 58
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.72 E-value=1.2e-17 Score=122.45 Aligned_cols=115 Identities=27% Similarity=0.274 Sum_probs=78.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEE
Q ss_conf 99980889888899999999999987995999987877680112124633345411676302577121024444442000
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSI 88 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~i 88 (265)
|+| ++||||||||++++||.+|+++|++|++||+||. ++...++.+..+. ..+++
T Consensus 2 ia~-~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~-dlpe~~~~~~~~~-----------------------~~l~~ 56 (116)
T cd02034 2 IAI-TGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD-DLPERLSVEVGEI-----------------------KLLLV 56 (116)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CCHHHHCEECCCC-----------------------CEEEE
T ss_conf 789-8899774999999999999978996999989897-1235542331787-----------------------07999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 14887457750001232222102333224765102782033101333222210112331001111
Q gi|254780806|r 89 IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPL 153 (265)
Q Consensus 89 ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~ 153 (265)
+...... +....-+ ....+++++...+..+||||++||++|+.++.+......|.+++|+
T Consensus 57 lg~~~~~-g~GC~C~----~n~ll~~~l~~l~~~~~~~VvvD~eAGiEHl~Rg~~~~vD~livVs 116 (116)
T cd02034 57 MGMGRPG-GEGCYCP----ENALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGTAEGVDLLVVVN 116 (116)
T ss_pred EECCCCC-CCCEECC----HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCHHHCCCEEEEEC
T ss_conf 9734358-9940882----5789999999970679989999678548777300664399999969
No 59
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=99.72 E-value=5e-18 Score=124.75 Aligned_cols=46 Identities=39% Similarity=0.506 Sum_probs=41.4
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHCCC
Q ss_conf 980889888899999999999987--9959999878776801121246
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAI--GENVLLIDLDPQGNASTGLGIE 56 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~--g~rVllID~D~q~~~~~~l~~~ 56 (265)
|+.+||||||||+++.+|..+|++ |+|||||=.||--|++-.|+.+
T Consensus 1 f~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STDPAHsL~D~F~~e 48 (330)
T TIGR00345 1 FFGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTDPAHSLSDVFEQE 48 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 977878823888999999999851899779998408600278861132
No 60
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.68 E-value=9.7e-17 Score=117.22 Aligned_cols=78 Identities=44% Similarity=0.678 Sum_probs=70.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
+|++.+.| ||||||+++|||..|+++|+||++||
T Consensus 1 ~i~~~~~k-GvGKTT~a~~La~~la~~g~~Vl~vD--------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKG-GVGKTTLAANLAAALAKRGKRVLLID--------------------------------------------- 34 (99)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEC---------------------------------------------
T ss_conf 98985899-77689999999999998899699986---------------------------------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC---CCHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 0148874577500012322221023332247651027820331013332222---1011233100111112311378887
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT---MNAMAAADSILVPLQCEFFALEGLS 164 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~---~~al~aad~viip~~p~~~s~~~~~ 164 (265)
|||++|+||+.+... ..++.++|.+++|+.|+..++.+..
T Consensus 35 -------------------------------------d~iiiD~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 77 (99)
T cd01983 35 -------------------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGAR 77 (99)
T ss_pred -------------------------------------CCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf -------------------------------------7178858998884689999878758958996598488999999
Q ss_pred HHHH
Q ss_conf 5335
Q gi|254780806|r 165 QLLE 168 (265)
Q Consensus 165 ~~~~ 168 (265)
++..
T Consensus 78 ~~~~ 81 (99)
T cd01983 78 RLTE 81 (99)
T ss_pred HHHH
T ss_conf 9999
No 61
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.66 E-value=7.5e-17 Score=117.86 Aligned_cols=126 Identities=25% Similarity=0.315 Sum_probs=72.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCC----CCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 74999980889888899999999999987995999987877680112124633----34541167630257712102444
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELY----DRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~----~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+|++ ++++||||||||+++.+|..+|..|+||++|-.||-.|+...|+.+.. ....++.-... +...++..
T Consensus 2 ~riv-~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~ei---D~~~~l~e- 76 (322)
T COG0003 2 TRIV-FFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALEL---DPEKALEE- 76 (322)
T ss_pred CEEE-EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCCHHHCCCCCCEEEE---CHHHHHHH-
T ss_conf 3799-993688545899999999999975990799984898744765423047851125888754660---68999999-
Q ss_pred CCCCEE-----ECCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 444200-----014887--4577500012322221023332247651027820331013332
Q gi|254780806|r 82 AIPNLS-----IIPSTM--DLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN 136 (265)
Q Consensus 82 ~~~~l~-----iipa~~--~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~ 136 (265)
+++.+. .++.+. .....+.......+....+.++..-...++||+|++||||.-.
T Consensus 77 y~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 77 YWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf 99999999974126554212578898609888999999999998752689889984897087
No 62
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=99.53 E-value=1.2e-14 Score=105.03 Aligned_cols=183 Identities=22% Similarity=0.285 Sum_probs=127.9
Q ss_pred CCE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 874-999980889888899999999999987995999987877-680112124633345411676302577121024444
Q gi|254780806|r 5 KSR-IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 5 ~~k-vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
..+ ||.+.+..-|+||+.+..|+|..+|.-|+|+++||.|.. +.++.+|+.++ ..++.|.|.|...+...+....
T Consensus 559 e~~Pvv~~~~p~p~~Gks~i~an~aaliA~ggkR~llidad~rk~~l~q~~~~~~---~~GL~d~LaG~rs~~~~~~~~~ 635 (778)
T TIGR01005 559 ESEPVVALASPLPDVGKSIIEANLAALIAAGGKRVLLIDADIRKAALSQILVKAE---KSGLLDLLAGERSLELDVKAEV 635 (778)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCC---CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8987588568888665688999999998326871787326776055564421478---8853755642465663034023
Q ss_pred CCCEEECCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH-HHHHCC-CCCCCCCH
Q ss_conf 442000148874-5-7750001232222102333224765102782033101333222210112-331001-11112311
Q gi|254780806|r 83 IPNLSIIPSTMD-L-LGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA-AADSIL-VPLQCEFF 158 (265)
Q Consensus 83 ~~~l~iipa~~~-~-~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~-aad~vi-ip~~p~~~ 158 (265)
..++++|+++.. + ..-..+|-..+ +..+.+ ......|||++||+||-.-..-..++. .++.++ +++.=+..
T Consensus 636 ~~~l~~l~~GGas~~~h~~~eLLasp----a~~~l~-~~ar~~~D~vvvd~~~~~pV~d~~a~a~la~~~lslvt~~~r~ 710 (778)
T TIGR01005 636 AAKLDILDAGGASLLRHNSSELLASP----AMVELV-ENARSAYDLVVVDVAAVAPVADAKALAALADLVLSLVTEYDRS 710 (778)
T ss_pred CCCCHHHHCCCCCCCCCCCCHHHCCH----HHHHHH-HHHHHHCCEEEECCCHHHHHHHHHHHHHCCCEEEHHEEEECCE
T ss_conf 67711233476124788841532166----889999-9886518857745531248999999742242002001111441
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 3788875335777655432026774310020231253100112
Q gi|254780806|r 159 ALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 159 s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.++-+...++.+. +.| -++.|||+|+.++++...+..
T Consensus 711 ~~~~~r~~~~~~~----~~n--~~v~gV~ln~ldpn~~~tkaa 747 (778)
T TIGR01005 711 VVELVRELLKSLS----RLN--SEVLGVVLNKLDPNELVTKAA 747 (778)
T ss_pred EHHHHHHHHHHHH----HCC--CEEEEEEECCCCCCCHHHHEE
T ss_conf 0444288775445----318--604566504557520111001
No 63
>KOG2825 consensus
Probab=99.32 E-value=3.7e-12 Score=90.45 Aligned_cols=53 Identities=38% Similarity=0.502 Sum_probs=45.2
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCC
Q ss_conf 74999980889888899999999999987995999987877680112124633
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELY 58 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~ 58 (265)
+.---|..+||||||||.++.||..+|.-+.+||+|-.||--|++-.|+....
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkft 70 (323)
T KOG2825 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFT 70 (323)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 03699976767767653126899998616886478616853116788887751
No 64
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.95 E-value=4.5e-09 Score=72.47 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=101.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCC---CHHHCCCCCCC
Q ss_conf 9999808898888999999999999879959999878776-8011212463334541167630257---71210244444
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEK---NINQILIQTAI 83 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~---~l~~~i~~~~~ 83 (265)
+|-|...--|||||++++.|+..|+++|++|.-.= |.. .... +....+.. -+........ .+....++.
T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~K--Pv~tG~~~--~~~~~Da~-~~~~~~~~~~~~~~~~p~~~~~-- 73 (223)
T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYK--PVQSGCDG--GLRNGDAL-ALQRLSGLPLDYELVNPYRFEE-- 73 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC--EEEECCCC--CCCCHHHH-HHHHHHCCCCCHHHHCCCCCCC--
T ss_conf 98998689997699999999999997899489975--12048988--99727999-9999808999867605402588--
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCHHHHHH-------HCCCCCCC
Q ss_conf 4200014887457750001232222102333224765102782033101333-222210112331-------00111112
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSF-NLLTMNAMAAAD-------SILVPLQC 155 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~-~~~~~~al~aad-------~viip~~p 155 (265)
|.++.++ ....+..-....+.+.+. .++.+||+++|.-.+|+ .+++... ..+| -+|+|+..
T Consensus 74 ------p~sP~~a---a~~~g~~i~~~~i~~~~~-~l~~~~d~vlvEGaGGl~~Pl~~~~-~~~Dla~~l~~pvILV~~~ 142 (223)
T PRK00090 74 ------PLSPHLA---ARLEGVTIDLEKISAALR-ELAQQADLVLVEGAGGLLVPLTDDL-TLADLAAQLQLPVILVVGV 142 (223)
T ss_pred ------CCCHHHH---HHHHCCCCCHHHHHHHHH-HHHHHCCEEEEECCCCCCCCCCCCC-CHHHHHHHHCCCEEEEECC
T ss_conf ------9898999---999098468999999999-9983189899946886556756787-8899999968898999769
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 3113788875335777655432026774310020231253100112689998808520156267868898
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
..-++- ..+-+++.+++ ..+++.|+|+|++++......+..+.+++..|.++++ +||+...+.
T Consensus 143 ~lG~in---htllt~eal~~---~gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPvLG-~iP~~~~~~ 205 (223)
T PRK00090 143 KLGCIN---HTLLTLEAIRA---RGLPLAGWVANGVPPEGLRHAENLATLAELLPAPLLG-RLPYLAELS 205 (223)
T ss_pred CCCHHH---HHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE-ECCCCCCCC
T ss_conf 888099---99998999996---8994899999685883667776899999854998899-758999989
No 65
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.84 E-value=1.9e-08 Score=68.77 Aligned_cols=161 Identities=22% Similarity=0.266 Sum_probs=81.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 74999980889888899999999999987995999987877680112124633345411676302577121024444442
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPN 85 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~ 85 (265)
.+||+++ +=-||||||+.+-||..+.++|++|.+|-+|....... -.+. +..+ .-|
T Consensus 1 P~vi~lv-GptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~-eQL~------~ya~----------------~l~ 56 (196)
T pfam00448 1 PNVILLV-GLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAI-EQLK------QLAE----------------RLG 56 (196)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHH------HHHH----------------HCC
T ss_conf 9699998-99999889999999999997799289997587768899-9999------9998----------------639
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC---CCHH------HHHHHCCCCCCCC
Q ss_conf 000148874577500012322221023332247651027820331013332222---1011------2331001111123
Q gi|254780806|r 86 LSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT---MNAM------AAADSILVPLQCE 156 (265)
Q Consensus 86 l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~---~~al------~aad~viip~~p~ 156 (265)
+.+.+... ..+....+.+.+.....++||+|||||++ .++.. +.-+ ...+.+++|..+.
T Consensus 57 v~~~~~~~-----------~~d~~~~~~~~l~~~~~~~~D~IlIDTaG-r~~~d~~~~~el~~~~~~~~~~~~~LVl~a~ 124 (196)
T pfam00448 57 VPVFGSGT-----------GSDPAAVAFDAVEKAKAENYDVVLVDTAG-RLQNDKNLMDELKKIKRVIAPDEVLLVLDAT 124 (196)
T ss_pred CEEEECCC-----------CCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 81781487-----------77878999999999884689999998999-8747677899999998522873028998567
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 157 FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 157 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
.- ...+.. +..+ ...+.+-++|+|+.|...+... +++.+.+ .+.++
T Consensus 125 ~~-~~~~~~----~~~f----~~~~~~~~~I~TKlDet~~~G~-~l~~~~~-~~~Pi 170 (196)
T pfam00448 125 TG-QNALNQ----AKAF----NEAVGITGVILTKLDGDAKGGA-ALSIAAE-TGKPI 170 (196)
T ss_pred CC-CCHHHH----HHHH----HHHCCCCCEEEEEECCCCCCCH-HHHHHHH-HCCCE
T ss_conf 78-213789----9987----6004776268884057887529-9989999-89697
No 66
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=98.84 E-value=4.7e-09 Score=72.33 Aligned_cols=176 Identities=23% Similarity=0.308 Sum_probs=91.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHH--HHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 687499998088988889999999999--998799599998787768011212463334541167630257712102444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTA--LAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~--la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+++-||=+ .+==|+||||+|+=||++ +.+.|+||||+=||.+.-+..- +-..|.+ ++
T Consensus 100 ~~P~vilm-vGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~-----------------QL~~Lg~---Q~ 158 (439)
T TIGR00959 100 KRPTVILM-VGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIE-----------------QLKVLGE---QV 158 (439)
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHH-----------------HHHHHHH---HC
T ss_conf 86838997-313788578899999999999863897034032103478999-----------------9999767---52
Q ss_pred CCCCEEECC-CCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCHHH------HHHHCCC
Q ss_conf 444200014-8874577500012322-2210233322476510278203310133322--2210112------3310011
Q gi|254780806|r 82 AIPNLSIIP-STMDLLGIEMILGGEK-DRLFRLDKALSVQLTSDFSYIFLDCPPSFNL--LTMNAMA------AADSILV 151 (265)
Q Consensus 82 ~~~~l~iip-a~~~~~~~~~~l~~~~-~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~--~~~~al~------aad~vii 151 (265)
|+.+.+ -..+ ..+ +.....++++...-..+||+|||||.+=+.. ..+.=|. -=|+++.
T Consensus 159 ---gVpvf~h~~~~---------~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLl 226 (439)
T TIGR00959 159 ---GVPVFAHLGKG---------QSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILL 226 (439)
T ss_pred ---CCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf ---88711004788---------898877899999999999748978997267512555999999999988868870541
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 11123113788875335777655432026774310020231253100112689998808520156267868898
Q gi|254780806|r 152 PLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 152 p~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
|+.. ++=+ +.+ ++.+.|+..+.+-|+|++++|.-++=.- .=.+++..|.|+ . +|--.+++.
T Consensus 227 VvDa--M~GQ------dAv-n~A~~F~e~lgltG~vltK~DGDaRGGA--ALS~~~~tg~PI-K-FiG~GEK~~ 287 (439)
T TIGR00959 227 VVDA--MTGQ------DAV-NTAKTFNERLGLTGVVLTKLDGDARGGA--ALSVRSVTGKPI-K-FIGVGEKIE 287 (439)
T ss_pred CCHH--CCHH------HHH-HHHHHHCCCCCCCEEEEECCCCCCHHHH--HHHHHHHHCCCE-E-EEECCCCCC
T ss_conf 2201--0216------999-9998636600135478854756605789--999999968961-8-884177723
No 67
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.78 E-value=7.6e-08 Score=65.29 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=105.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEE--EECCCCHHHCCCCCCCC
Q ss_conf 4999980889888899999999999987995999987877680112124633345411676--30257712102444444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDL--LIEEKNINQILIQTAIP 84 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~--l~~~~~l~~~i~~~~~~ 84 (265)
|-+-|...--+||||.+|+.|+.+++++|++|...=- .|.+.. ..+.+..-.|. +.....+. ..++
T Consensus 3 k~~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~KP-VasG~~------~~~~g~~~~Da~~l~~~~~~~-----~~~~ 70 (231)
T PRK12374 3 KRFFITGTDTSVGKTVVSRALLQALASQGKSVAGYKP-VAKGSK------ETPEGLRNKDALVLQSVSTIE-----LPYE 70 (231)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-EECCCC------CCCCCCCHHHHHHHHHHHCCC-----CCHH
T ss_conf 6479987899953999999999999978994888856-883996------689987247899999873789-----9988
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCH-----HHHHHH-CCCCCCCCC
Q ss_conf 2000148874577500012322221023332247651027820331013332-222101-----123310-011111231
Q gi|254780806|r 85 NLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN-LLTMNA-----MAAADS-ILVPLQCEF 157 (265)
Q Consensus 85 ~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~-~~~~~a-----l~aad~-viip~~p~~ 157 (265)
.+-|-......... .....-....+.+.+. .+.++||+++|--.+|+- +++... ...-+. +|+|+....
T Consensus 71 --~vnP~~~~~~~aa~-~~~~~id~~~i~~~~~-~l~~~~d~vlVEGAGG~~vPl~~~~~~~Dl~~~l~lPVILV~~~~L 146 (231)
T PRK12374 71 --AVNPIALSEEESSV-AHSCPINYTLISNGLA-NLTDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQE 146 (231)
T ss_pred --HCCCCCCCCCCCCH-HHCCCCCHHHHHHHHH-HHHHHCCEEEEECCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCC
T ss_conf --71976688665774-4548578999999999-9885579799977986213047651499999983999999988986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 13788875335777655432026774310020231253100112689998808520156267868898
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
-++- ..+-+++.++. ..+++.|+|+|++++......+.++.+++..+.++++ +||+-....
T Consensus 147 G~IN---HtLLT~eal~~---~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~LG-~iP~l~~~~ 207 (231)
T PRK12374 147 GCIN---HALLTAQAIAN---DGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIG-ELPYLPRAE 207 (231)
T ss_pred CHHH---HHHHHHHHHHH---CCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEE-ECCCCCCCC
T ss_conf 8488---99999999997---8995799999836797046788999999855999788-689999989
No 68
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.76 E-value=6.3e-08 Score=65.77 Aligned_cols=159 Identities=23% Similarity=0.288 Sum_probs=78.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 9999808898888999999999999879959999878776-801121246333454116763025771210244444420
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
||.++ +==||||||+.+-||..+.++|+||.+|=+|... ..---| . +..+ .-++
T Consensus 2 Vi~lv-GptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL--~------~~a~----------------~l~v 56 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQL--R------VLGE----------------QVGV 56 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH--H------HHHH----------------HCCC
T ss_conf 99998-99999889999999999997699289997488757799999--9------9999----------------7498
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCC----HHH--HHHHCCCCCCCCCH
Q ss_conf 0014887457750001232222102333224765102782033101333--222210----112--33100111112311
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSF--NLLTMN----AMA--AADSILVPLQCEFF 158 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~--~~~~~~----al~--aad~viip~~p~~~ 158 (265)
.+.... ...+....+++.+...-.+.||+|+|||++-. +..... .+. ..+.+++|.... .
T Consensus 57 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~-~ 124 (173)
T cd03115 57 PVFEEG-----------EGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-T 124 (173)
T ss_pred EEEECC-----------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCC-C
T ss_conf 599227-----------7558799999999998756899899978887879999999999998644897215742465-5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 3788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 159 ALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 159 s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
. ....+....+ ...+.+-++++|++|...+... +++...+ .+.|+
T Consensus 125 ~----~~~~~~~~~f----~~~~~~~~~I~TKlDet~~~G~-~ls~~~~-~~~Pi 169 (173)
T cd03115 125 G----QDAVNQAKAF----NEALGITGVILTKLDGDARGGA-ALSIRAV-TGKPI 169 (173)
T ss_pred H----HHHHHHHHHH----HHCCCCCEEEEEEECCCCCCCH-HHHHHHH-HCCCE
T ss_conf 0----6589999998----7427997899971438997579-9999999-89090
No 69
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.76 E-value=1.8e-07 Score=63.14 Aligned_cols=150 Identities=21% Similarity=0.295 Sum_probs=88.5
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCC
Q ss_conf 87499998088988889999999999998799599998787768011212463334541167630257712102444444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIP 84 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~ 84 (265)
++-||.+. +-+|+||||+.--|...|..+|+||.+|=-||-. +... .++ +.+.-..++. +..+
T Consensus 50 ~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS---------p~TG-Gsi---LGDRiRM~~~---~~~~ 112 (323)
T COG1703 50 NAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS---------PFTG-GSI---LGDRIRMQRL---AVDP 112 (323)
T ss_pred CCCEEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC---------CCCC-CCC---CCCHHHHHHH---CCCC
T ss_conf 98378731-7998866889999999999779678999988999---------9878-530---1207667764---4699
Q ss_pred CEEEC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHH-HH
Q ss_conf 20001--4887457750001232222102333224765102782033101333222210112331001111123113-78
Q gi|254780806|r 85 NLSII--PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFA-LE 161 (265)
Q Consensus 85 ~l~ii--pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s-~~ 161 (265)
|+.+= |+...+.+... ...+.+...-+-.||+|||-|- |.|..-......+|.+++++.|..-+ ++
T Consensus 113 ~vFiRs~~srG~lGGlS~----------at~~~i~~ldAaG~DvIIVETV-GvGQsev~I~~~aDt~~~v~~pg~GD~~Q 181 (323)
T COG1703 113 GVFIRSSPSRGTLGGLSR----------ATREAIKLLDAAGYDVIIVETV-GVGQSEVDIANMADTFLVVMIPGAGDDLQ 181 (323)
T ss_pred CEEEEECCCCCCCHHHHH----------HHHHHHHHHHHCCCCEEEEEEC-CCCCCHHHHHHHCCEEEEEECCCCCCHHH
T ss_conf 817842687765101668----------8999999998618988999814-78841557765216689996578882788
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 887533577765543202677431002023125
Q gi|254780806|r 162 GLSQLLETVEEVRRTVNSALDIQGIILTMFDSR 194 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~ 194 (265)
+.+.- ++ ++. + =+++|++|..
T Consensus 182 ~iK~G--im-Eia-------D--i~vINKaD~~ 202 (323)
T COG1703 182 GIKAG--IM-EIA-------D--IIVINKADRK 202 (323)
T ss_pred HHHHH--HH-HHH-------H--EEEEECCCHH
T ss_conf 88741--46-540-------3--3567256726
No 70
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.75 E-value=4.7e-08 Score=66.53 Aligned_cols=42 Identities=36% Similarity=0.435 Sum_probs=38.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6874999980889888899999999999987995999987877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
++++||.+. +=-||||||+++-||+.+.++|++|+++=+|..
T Consensus 204 ~~g~VIaLV-GvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTF 245 (407)
T PRK12726 204 SNHRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 369089998-999897899999999999977991799970667
No 71
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.75 E-value=2.7e-08 Score=67.96 Aligned_cols=173 Identities=15% Similarity=0.196 Sum_probs=87.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
|-|.|.....|+||||+|..|..+|+++|++|.-.-+-|- .-|+ .++ ..+.-....||
T Consensus 2 kgilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~GPD----------YIDP--~~h----------~~a~G~~~~NL 59 (432)
T PRK13896 2 DGVVLAGTSSGVGKTVATLAVLQALADAGYDVQPAKAGPD----------FIDP--SHH----------EAVVDTPSRSL 59 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC----------CCCH--HHH----------HHHHCCCCCCC
T ss_conf 6289977899998999999999999978496376666847----------5198--999----------99968984468
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-CCHHHHHH----HCCCCCCCCCHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222-10112331----00111112311378
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT-MNAMAAAD----SILVPLQCEFFALE 161 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~-~~al~aad----~viip~~p~~~s~~ 161 (265)
|.. +.... .+++.. .....|+.||.---|+=+-. .+.-..|. =||+|+.+.-.+.
T Consensus 60 D~~------------m~~~~----~v~~~~---~~~~aDiaviEGvMGLyDG~~~Sta~lA~~l~~PVvLVvd~~~~~~- 119 (432)
T PRK13896 60 DPW------------LSGED----GMRRTY---WRGTGDVCVVEGMMGLYDGTVASTAAVAEELDLPVVLVVDAKAGME- 119 (432)
T ss_pred CHH------------HCCHH----HHHHHH---HHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHH-
T ss_conf 910------------18989----999999---7279986999612324578877589999984999899993320188-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 8875335777655432026774310020231253100112689998808520156267868898
Q gi|254780806|r 162 GLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 162 ~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
++.-++.-+..+....+.++++.|||+|++.+ ..|.+.+.+..+. +.++++ +||++..+.
T Consensus 120 s~aA~v~G~~~f~~~~~~d~~iaGVIlN~v~s--~rh~~~l~~al~~-~i~vlG-~lPr~~~l~ 179 (432)
T PRK13896 120 SVAATALGFQAYADRAGVDIDVAGVLAQRAHG--GRHADGIRDALPD-ELTYFG-RVPPRSDLE 179 (432)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC--HHHHHHHHHHHHC-CCCEEE-EECCCCCCC
T ss_conf 89999999997241247652476688426775--8899999999870-894898-842477789
No 72
>PRK10416 cell division protein FtsY; Provisional
Probab=98.73 E-value=9.2e-08 Score=64.81 Aligned_cols=165 Identities=20% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
.+...||-|+ +=-|+||||++.-||+.|.+.|++|+++=+|.......- .+.. | ..
T Consensus 292 ~~~P~VIl~v-GvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAie-QL~~------w----------------~~ 347 (499)
T PRK10416 292 GKTPFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE-QLQV------W----------------GQ 347 (499)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH-HHHH------H----------------HC
T ss_conf 9998799997-478787898999999999977995378840667568999-9999------8----------------42
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CC-------HHH-----HHHH
Q ss_conf 442000148874577500012322221023332247651027820331013332222--10-------112-----3310
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT--MN-------AMA-----AADS 148 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~--~~-------al~-----aad~ 148 (265)
.-|+.++.... ..+......+.+.......||++||||.+-+..-. +. ++. +-+.
T Consensus 348 r~~v~vi~~~~-----------g~Dpa~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e 416 (499)
T PRK10416 348 RNNIPVIAQHT-----------GADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE 416 (499)
T ss_pred CCCCEEEECCC-----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 45736983689-----------9997999999999999729998998577643260999999999999997237899974
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 01111123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 149 ILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 149 viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
+++|+.... + . +.+... +.++..+.+-|+|+|+.|...+=. +.-.+...++.++
T Consensus 417 ~lLVlDa~t-G----Q---na~~qa-k~F~e~~~ltGiIlTKlDGtAKGG--~~lsi~~~~~~PI 470 (499)
T PRK10416 417 VMLTIDAST-G----Q---NAVSQA-KLFHEAVGLTGITLTKLDGTAKGG--VIFSVADQFGIPI 470 (499)
T ss_pred EEEEEECCC-C----H---HHHHHH-HHHHHCCCCCEEEEECCCCCCCCH--HHHHHHHHHCCCE
T ss_conf 899977876-7----7---899999-998442799759996567788525--9999999988395
No 73
>PRK00784 cobyric acid synthase; Provisional
Probab=98.72 E-value=6.1e-08 Score=65.84 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=107.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEE-------CCCCHHH
Q ss_conf 874999980889888899999999999987995999987877-68011212463334541167630-------2577121
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLI-------EEKNINQ 76 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~-------~~~~l~~ 76 (265)
.+|.|-|...--+||||++++.|...|+++|+||.=.- .| .++..+ +......-+..++++ -....++
T Consensus 2 ~~k~lMv~GT~S~vGKS~l~aaLCRi~~~~G~~VaPFK--aQNMslNs~--vt~dG~EigrAQ~~QA~Aag~~p~v~MNP 77 (492)
T PRK00784 2 MAKALMVQGTTSDAGKSTLVAGLCRILARRGLRVAPFK--AQNMSLNSA--VTADGGEIGRAQALQAEAAGVEPSVDMNP 77 (492)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC--HHHCCCCCE--ECCCCCEEHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86305888678887799999999999995898557857--022466517--88999833699999999869999767688
Q ss_pred CCCCCCCC-CEEECCCCCCCCCCCCC-CCCCCCCC-HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC---------HHH
Q ss_conf 02444444-20001488745775000-12322221-02333224765102782033101333222210---------112
Q gi|254780806|r 77 ILIQTAIP-NLSIIPSTMDLLGIEMI-LGGEKDRL-FRLDKALSVQLTSDFSYIFLDCPPSFNLLTMN---------AMA 144 (265)
Q Consensus 77 ~i~~~~~~-~l~iipa~~~~~~~~~~-l~~~~~~~-~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~---------al~ 144 (265)
+..+...+ +--||--+......... ........ ....+.+ ..+..+||+|++.-.++.-.+++. |-.
T Consensus 78 ILLKP~gd~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~~v~~a~-~~L~~~~d~iV~EGAGSpaEiNL~~~Di~Nm~~A~~ 156 (492)
T PRK00784 78 VLLKPQSDTGSQVIVQGKVVGNMDARDYHDYKPRLLEAVLESL-DRLAAEYDLVVVEGAGSPAEINLRDRDIANMGFAEA 156 (492)
T ss_pred EEECCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7763189988679999978753139999986999999999999-998865889999358982002652200242899986
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 331001111123113788875335777655432026774310020231253100112689998808520156267868
Q gi|254780806|r 145 AADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNV 222 (265)
Q Consensus 145 aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~ 222 (265)
+---+|+|..-|.-.+ ...+..+++.+... +.. .+.|+|+|||.-...+-..-++.+++..+.++++ +||+..
T Consensus 157 ~~apviLV~DIdRGGv--fAsl~GT~~lL~~~-eR~-li~G~IiNKFRGD~~ll~pG~~~le~~tg~PvlG-viP~~~ 229 (492)
T PRK00784 157 ADAPVILVADIDRGGV--FASLVGTLALLSPE-ERA-RVKGFVINKFRGDISLLEPGLDWLEELTGIPVLG-VLPYLD 229 (492)
T ss_pred CCCCEEEEEECCCCCH--HHHHHHHHHHCCHH-HHH-HEEEEEEEEECCCHHHHCCHHHHHHHHHCCCCEE-EECCCC
T ss_conf 5998899997567642--68776388759998-871-1589999764587466355999999986898068-614656
No 74
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.71 E-value=3.3e-07 Score=61.58 Aligned_cols=164 Identities=19% Similarity=0.245 Sum_probs=95.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCC
Q ss_conf 68749999808898888999999999999879959999878776801121246333454116763025771210244444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAI 83 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~ 83 (265)
.++.+|.|. +-.|+||||+.-.|+..+-..|+||.++=-||-...|- + ++ |.+.....+. ...
T Consensus 27 g~a~~iGiT-G~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sg---------G-ai---LGDr~RM~~~---~~~ 89 (267)
T pfam03308 27 GRAHRVGIT-GVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTG---------G-SI---LGDRTRMQRL---AVD 89 (267)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---------C-CC---CCCHHHHHHH---CCC
T ss_conf 995599876-89988799999999999996898689999789998888---------6-30---0107777650---589
Q ss_pred CCEEEC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHH-H
Q ss_conf 420001--4887457750001232222102333224765102782033101333222210112331001111123113-7
Q gi|254780806|r 84 PNLSII--PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFA-L 160 (265)
Q Consensus 84 ~~l~ii--pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s-~ 160 (265)
+++.+= |+...+.+... ...+.+...-...||+|||-|- |.|.--..+...+|.++++..|..-+ +
T Consensus 90 ~~vfiRs~~srg~lGGls~----------~t~~~i~lleaaGfD~IivETV-GVGQsE~~v~~~aD~~llv~~Pg~GDei 158 (267)
T pfam03308 90 PGAFIRSSPSRGALGGLSR----------ATREAILLLDAAGFDVIIIETV-GVGQSEVDIANMADTFVLVTIPGGGDDL 158 (267)
T ss_pred CCEEEEECCCCCCCCCCCH----------HHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHCCEEEEEECCCCCHHH
T ss_conf 9858864577888887147----------6999999999779999999247-7775303555415768999558876088
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH
Q ss_conf 8887533577765543202677431002023125310011268999880
Q gi|254780806|r 161 EGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNL 209 (265)
Q Consensus 161 ~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~ 209 (265)
+++++- |-++ . + -+|+|+.|... .+....+++..+
T Consensus 159 Q~iKaG---ImEi-----a--D--i~vVNKaD~~~--A~~~~~~l~~~l 193 (267)
T pfam03308 159 QGIKAG---LMEI-----A--D--IYVVNKADLPG--AERTARELRSAL 193 (267)
T ss_pred HHHHHH---HHHH-----C--C--EEEEECCCHHH--HHHHHHHHHHHH
T ss_conf 898753---7653-----5--4--89996676476--999999999998
No 75
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.71 E-value=6.7e-08 Score=65.63 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=91.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 74999980889888899999999999987995999987877680112124633345411676302577121024444442
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPN 85 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~ 85 (265)
-+.|.|.....|+||||+++.|..+|+++|+||.-.-+-|- + +++ .+. ..+.-....|
T Consensus 3 ~p~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~GPD-----y--Idp-----~~~----------~~a~g~~~~n 60 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD-----Y--IDP-----AFH----------AAATGRPSRN 60 (451)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-----C--CCH-----HHH----------HHHHCCCCCC
T ss_conf 88799986899997899999999999968794575357857-----6--298-----999----------9997897535
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC-----------CCCCCHHHHHHHCCCCCC
Q ss_conf 000148874577500012322221023332247651027820331013332-----------222101123310011111
Q gi|254780806|r 86 LSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN-----------LLTMNAMAAADSILVPLQ 154 (265)
Q Consensus 86 l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~-----------~~~~~al~aad~viip~~ 154 (265)
||.. +... ..+++.+ ....++||++||----|+= ..-.+-+..+. ||+|+.
T Consensus 61 LD~~------------l~~~----~~v~~~~-~~~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~l~~P-ViLViD 122 (451)
T PRK01077 61 LDSW------------MMGE----DLVRALF-ARAAGGADIAVIEGVMGLFDGAGGDPDKGSTADIARLLGAP-VVLVVD 122 (451)
T ss_pred CCHH------------HCCH----HHHHHHH-HHHCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHHHCCC-EEEEEC
T ss_conf 8834------------4899----9999999-97546688899850101134545677777789999870998-899984
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 2311378887533577765543202677431002023125310011268999880852015626786889
Q gi|254780806|r 155 CEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRI 224 (265)
Q Consensus 155 p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i 224 (265)
.+-.+ .++..++..+.. +.++.++.|+|+|++.. ..|.+.++...+..|.++++ +||.+..+
T Consensus 123 ~~~~~-~s~aa~v~G~~~----~~~~~~I~GvIlNk~~g--~~h~~ll~~~ie~~gvpvlG-~lP~~~~l 184 (451)
T PRK01077 123 ASGMA-QSAAALVLGFAR----FDPDLNIAGVILNRVGS--ERHYQLLREALEELGLPVLG-ALPRDAAL 184 (451)
T ss_pred CCCHH-HHHHHHHHHHHH----HCCCCCEEEEEEECCCC--HHHHHHHHHHHHHCCCCEEE-EECCCCCC
T ss_conf 66208-999999999997----59778774899624787--66899999999863995798-61576334
No 76
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.70 E-value=6.3e-08 Score=65.75 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=84.7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCC-CEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 7687499998088988889999999999998-799-59999878776-80112124633345411676302577121024
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAA-IGE-NVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILI 79 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~-rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~ 79 (265)
.++.|||+|+ +==||||||+.+=||..++. .|+ +|.+|=+|... ...- .+
T Consensus 207 ~~~~~vvalV-GPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~e--QL------------------------ 259 (412)
T PRK05703 207 LEQGGVVALV-GPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVE--QL------------------------ 259 (412)
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH--HH------------------------
T ss_conf 4567369998-88887567699999999999729981799983767777999--99------------------------
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC---C----CHHHH--HHHCC
Q ss_conf 444442000148874577500012322221023332247651027820331013332222---1----01123--31001
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT---M----NAMAA--ADSIL 150 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~---~----~al~a--ad~vi 150 (265)
+++.+- .+........+ .-|..+|.. + .++|+|||||++ .|+.- . ..+.. .+.++
T Consensus 260 k~Ya~i----------lgvp~~v~~~~---~~l~~al~~-~-~~~dlILIDTaG-~s~~d~~~~~eL~~~~~~~~~~~~~ 323 (412)
T PRK05703 260 KTYAKI----------MGIPVKVAYDP---KELAKALEQ-L-ANCDLILIDTAG-RSQRDPRLISELKALIENSKPIDVY 323 (412)
T ss_pred HHHHHH----------CCCEEEEECCH---HHHHHHHHH-H-CCCCEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999997----------19737984799---999999987-1-589979996898-8978999999999998624887189
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHH
Q ss_conf 111123113788875335777655432026774310020231253100112689998808520----15626786889
Q gi|254780806|r 151 VPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRI 224 (265)
Q Consensus 151 ip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i 224 (265)
+|+.+.. ..+.+..+ ++.++ .+.+.++|+|+.|....... +++.+.+. +.++ .++.||+|...
T Consensus 324 LVlsat~-~~~dl~~i---~~~f~-----~~~~~~lI~TKlDEt~~~G~-il~~~~~~-~lplsy~t~GQ~VPeDi~~ 390 (412)
T PRK05703 324 LVLSATT-KYRDLKDI---VKHFS-----RLPLDGLILTKLDETSSLGS-ILSLLIES-GLPISYLTDGQRVPDDIKV 390 (412)
T ss_pred EEECCCC-CHHHHHHH---HHHHC-----CCCCCEEEEEEECCCCCCCH-HHHHHHHH-CCCEEEEECCCCCHHHHHC
T ss_conf 9975989-98999999---99846-----79998799971128998629-99999998-8796999469997243422
No 77
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.70 E-value=3.9e-08 Score=67.00 Aligned_cols=164 Identities=25% Similarity=0.322 Sum_probs=87.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCC
Q ss_conf 68749999808898888999999999999879959999878776801121246333454116763025771210244444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAI 83 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~ 83 (265)
+..-||-++ +==|+||||++.-||.+|.++|++|++|-||.+.-... +-| ..+.+ +
T Consensus 98 ~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~--------------eQL---~~La~---q--- 153 (451)
T COG0541 98 KPPTVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI--------------EQL---KQLAE---Q--- 153 (451)
T ss_pred CCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH--------------HHH---HHHHH---H---
T ss_conf 998589998-15679748689999999997499458985056786899--------------999---99998---6---
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CC------HHHHHHHCCCCCCC
Q ss_conf 42000148874577500012322221023332247651027820331013332222--10------11233100111112
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT--MN------AMAAADSILVPLQC 155 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~--~~------al~aad~viip~~p 155 (265)
-++++.+.+. ..+.....++.+...-...||+|||||.+-+..-. .. ...--|+++.|+..
T Consensus 154 ~~v~~f~~~~-----------~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 154 VGVPFFGSGT-----------EKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred CCCCEECCCC-----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 0985316778-----------89979999999999997499889996887330309999999999855398748998764
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 3113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
-. =+.+. ...+.++..+.+-|+|+|+.|...+=.- .-.++...|.|+
T Consensus 223 m~--GQdA~-------~~A~aF~e~l~itGvIlTKlDGdaRGGa--ALS~~~~tg~PI 269 (451)
T COG0541 223 MI--GQDAV-------NTAKAFNEALGITGVILTKLDGDARGGA--ALSARAITGKPI 269 (451)
T ss_pred CC--CHHHH-------HHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHHHCCCE
T ss_conf 44--56789-------9999986626986499971467876228--885699878985
No 78
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=98.69 E-value=2.4e-08 Score=68.23 Aligned_cols=198 Identities=16% Similarity=0.194 Sum_probs=105.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEEC-------CCCHHHCCCCCC
Q ss_conf 980889888899999999999987995999987877-680112124633345411676302-------577121024444
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIE-------EKNINQILIQTA 82 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~-------~~~l~~~i~~~~ 82 (265)
|...---+|||++|+.|=..|+++||||.=.=. | ++|-.+.- ..+..-.++++.+- ....+++..+ +
T Consensus 3 V~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKs--QNMSLNSfvt--~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLK-P 77 (502)
T TIGR00313 3 VVGTSSSAGKSLLTAALCRILARRGYRVAPFKS--QNMSLNSFVT--AEGGEIAIAQALQALAAGIEPSVHMNPVLLK-P 77 (502)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHC--CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCC-C
T ss_conf 420115402899999999998527881278501--1010133311--3787551376899986387886234871016-7
Q ss_pred CCCEE--ECCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHCCCCCCEEEECCCCCCCC----------CCHHHHHH
Q ss_conf 44200--014887457750001232222102333224---7651027820331013332222----------10112331
Q gi|254780806|r 83 IPNLS--IIPSTMDLLGIEMILGGEKDRLFRLDKALS---VQLTSDFSYIFLDCPPSFNLLT----------MNAMAAAD 147 (265)
Q Consensus 83 ~~~l~--iipa~~~~~~~~~~l~~~~~~~~~l~~~l~---~~l~~~yD~IiiD~pp~~~~~~----------~~al~aad 147 (265)
.+++- ||--+....+....-. ..+...++.+.+. ..|+.+||||++--.+|.-.++ .+-+..||
T Consensus 78 kgdf~SQviv~G~a~g~~~~~~Y-~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~ 156 (502)
T TIGR00313 78 KGDFTSQVIVHGRAVGDMNAQEY-YKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADAD 156 (502)
T ss_pred CCCCEEEEEEEEECCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 88846678984112466761567-77999999999999998752028889982688710005331572247898643976
Q ss_pred HCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 0011111231----137888753357776554320267743100202312531001126899988085201562678688
Q gi|254780806|r 148 SILVPLQCEF----FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVR 223 (265)
Q Consensus 148 ~viip~~p~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~ 223 (265)
. |+|..=|. .|+.|+-+++. +.. ...+.|||+||+.-+...=..=++++++.-|.+|++ +||+++.
T Consensus 157 ~-iLvADIDRGGVFAsi~GTl~LL~------~~~--r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLG-v~PY~~~ 226 (502)
T TIGR00313 157 V-ILVADIDRGGVFASIYGTLKLLP------EEE--RKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVLG-VLPYDEN 226 (502)
T ss_pred E-EEEEECCCCCCHHHHHHHHHHCC------CCC--CCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCC
T ss_conf 7-99975077743243374666188------345--750030688354687244344568998854842344-6501257
Q ss_pred H
Q ss_conf 9
Q gi|254780806|r 224 I 224 (265)
Q Consensus 224 i 224 (265)
.
T Consensus 227 l 227 (502)
T TIGR00313 227 L 227 (502)
T ss_pred C
T ss_conf 7
No 79
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=1.4e-07 Score=63.73 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=38.1
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 76874999980889888899999999999987995999987877
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
+++.++|.++ +==|+||||+++-||+.+...|++|++|=+|..
T Consensus 72 ~~~~~vI~lv-G~~G~GKTTT~AKLA~~~~~~~~kV~lia~Dty 114 (270)
T PRK06731 72 EKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 7998189998-889898899999999999867990899983888
No 80
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.65 E-value=8.6e-08 Score=64.97 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=87.9
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
||.-..|++. +=-||||||+.+-||+.++..+++|.+|-+|...-.. .=.+ .+..+ |
T Consensus 238 ~~~~q~IALV-GPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGA-VEQL------KTYAe-----------I---- 294 (436)
T PRK11889 238 EKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT-VQQL------QDYVK-----------T---- 294 (436)
T ss_pred HHHCEEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH-HHHH------HHHHH-----------H----
T ss_conf 6417179998-9999888999999999986169808999806634769-9999------99999-----------8----
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCEEEECCCCCCC---CC----CHHHH--HHHCCC
Q ss_conf 442000148874577500012322221023332247651--02782033101333222---21----01123--310011
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLT--SDFSYIFLDCPPSFNLL---TM----NAMAA--ADSILV 151 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~--~~yD~IiiD~pp~~~~~---~~----~al~a--ad~vii 151 (265)
=|+.+.+. ..+ .-+.+++. .+. .+||+|||||.+ .|+. .. ..+.. .+.+++
T Consensus 295 -MgVPV~VV------------~dp---~eL~~AL~-~lkdka~~DLILIDTAG-RS~RD~~~I~EL~~~l~~~~p~ev~L 356 (436)
T PRK11889 295 -IGFEVIAV------------RDE---AAMTRALT-YFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICL 356 (436)
T ss_pred -HCCCEEEE------------CCH---HHHHHHHH-HHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf -49943996------------888---99999999-87633688889992989-88468999999999985127771699
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHHHHH
Q ss_conf 11123113788875335777655432026774310020231253100112689998808520----15626786889877
Q gi|254780806|r 152 PLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRISEA 227 (265)
Q Consensus 152 p~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i~~a 227 (265)
|+.... ..+.+.. .++.++ .+.+.++|+|+.|....... +++-+.+ .+.|+ -++.||+|..++.+
T Consensus 357 VLSATT-K~~DL~e---Ii~rF~-----~l~idglIfTKLDET~SlG~-ILNv~~~-s~LPIsYvTdGQ~VPEDIevA~a 425 (436)
T PRK11889 357 TLSASM-KSKDMIE---IITNFK-----DIHIDGIVFTKFDETASSGE-LLKIPAV-SSAPIVLMTDGQDVKKNIHIATA 425 (436)
T ss_pred EEECCC-CHHHHHH---HHHHHC-----CCCCCEEEEEECCCCCCCHH-HHHHHHH-HCCCEEEECCCCCCCCCHHHCCH
T ss_conf 997889-9899999---999725-----79988289971325687037-8889988-39987997899858753000699
No 81
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.61 E-value=8.9e-07 Score=59.04 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=93.2
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
..++.+|.|. +-.|+||||+.-.|+..+...|++|.++=.||-...|- + ++ |.+...+.+. ..
T Consensus 46 ~g~a~~iGiT-G~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sg---------G-ai---LGDr~Rm~~~---~~ 108 (325)
T PRK09435 46 TGNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTG---------G-SI---LGDKTRMERL---SR 108 (325)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---------C-CH---HHHHHHHHHH---CC
T ss_conf 7982599742-79998688999999999996798589999789999888---------6-10---1038888761---47
Q ss_pred CCCEEEC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHH-
Q ss_conf 4420001--4887457750001232222102333224765102782033101333222210112331001111123113-
Q gi|254780806|r 83 IPNLSII--PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFA- 159 (265)
Q Consensus 83 ~~~l~ii--pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s- 159 (265)
.+++.+= |+...+.+... ...+.+...-.-.||+|||-|- |.|.--......+|.++++..|..-+
T Consensus 109 ~~~~fiRs~~srg~lgg~~~----------~~~~~~~~~~a~g~d~i~iETv-GvGQ~e~~v~~~~d~~~~~~~p~~GD~ 177 (325)
T PRK09435 109 HPNAFIRPSPSSGTLGGVAR----------KTRETMLLCEAAGFDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAGDE 177 (325)
T ss_pred CCCEEEEECCCCCCCCCCCH----------HHHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCEEEEEECCCCCCH
T ss_conf 99848840677888677335----------4999999999779998999706-777148899874266888835887608
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHHHHHHHHHH
Q ss_conf 78887533577765543202677431002023125310-01126899988
Q gi|254780806|r 160 LEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL-SQQVVSDVRKN 208 (265)
Q Consensus 160 ~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~-~~~~~~~l~~~ 208 (265)
+++++.- |-++. + -+|+|+.|..... .+....+++..
T Consensus 178 ~Q~~K~G---ImEia-------D--i~vVNKaDgd~~~~A~~t~~e~~~a 215 (325)
T PRK09435 178 LQGIKKG---IMELA-------D--LIVINKADGDNHTAARRAAAEYRSA 215 (325)
T ss_pred HHHHHHH---HHHHC-------C--EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8998865---77504-------2--6899776755658999999999999
No 82
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=1.6e-07 Score=63.41 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 7687499998088988889999999999998-799599998787768011212463334541167630257712102444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+.+.|||+|+ +==||||||+.+=||..++. .|++|.+|=+|... +...-.+ ++
T Consensus 220 ~~~~kvi~lV-GPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYR-IgAvEQL------------------------kt 273 (432)
T PRK12724 220 KNQRKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR-IAAIEQL------------------------KR 273 (432)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH------------------------HH
T ss_conf 7776299998-99998889999999999999749927999526653-7799999------------------------99
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC------C-CHHHH---HH--HC
Q ss_conf 4442000148874577500012322221023332247651027820331013332222------1-01123---31--00
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT------M-NAMAA---AD--SI 149 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~------~-~al~a---ad--~v 149 (265)
+.+-+. +|- .. ... ...+.+.|. ..++|+|||||.+- |+-. + ..+.+ .+ ..
T Consensus 274 Ya~Il~-iPv-------~v--v~~---~~el~~al~---~~~~DlILIDTAGr-S~rd~~~~~eL~~ll~~~~~~~~ie~ 336 (432)
T PRK12724 274 YADTMG-MPF-------YP--VKD---IKKFKETLA---RDGSELILIDTAGY-SHRNLEQLERMQSFYSCFGEKDSVEN 336 (432)
T ss_pred HHHHHC-CCE-------EE--EEC---HHHHHHHHH---HCCCCEEEEECCCC-CCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 999859-945-------99--518---999999998---56999999929998-97899999999999986366788517
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHHH
Q ss_conf 1111123113788875335777655432026774310020231253100112689998808520----156267868898
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRIS 225 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i~ 225 (265)
++|+... ...+.+..+ ++.+. .+.+.++|+|+.|....... +++-+.. .+.++ .++.||+|...+
T Consensus 337 ~LVLSaT-tk~~dl~~i---i~~f~-----~l~~~~lIfTKLDET~s~G~-ilni~~~-~~~PisYiT~GQ~VPdDI~~A 405 (432)
T PRK12724 337 LLVLSST-SSYHHTLTV---LKAYE-----SLNYRRILLTKLDEADFLGS-FLELADT-YSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred EEEEECC-CCHHHHHHH---HHHHC-----CCCCCEEEEEECCCCCCCCH-HHHHHHH-HCCCEEEEECCCCCCCCHHHC
T ss_conf 9999788-998999999---99842-----69998499971227798669-9999999-889869980899797173335
No 83
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.61 E-value=1.4e-07 Score=63.75 Aligned_cols=103 Identities=25% Similarity=0.370 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC-CCCEEECCCC
Q ss_conf 889888899999999999987995999987877680112124633345411676302577121024444-4420001488
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA-IPNLSIIPST 92 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~-~~~l~iipa~ 92 (265)
+--|+||||.+..+...+...|++|.+|-+||.+. . + +++..-++.|.+ ++.+++.+.. .||--++
T Consensus 3 GpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e-~--~---pY~~~iDIrd~i----~~~dvM~~~~LGPNGali--- 69 (234)
T pfam03029 3 GGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAE-N--L---PYEADIDIRELI----TVADVMEDYGLGPNGALT--- 69 (234)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-C--C---CCCCCCCHHHHC----CHHHHHHHCCCCCCHHHH---
T ss_conf 98989889999999999997799759997898665-8--9---998777178746----799999982989738999---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 745775000123222210233322476510278203310133322221
Q gi|254780806|r 93 MDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM 140 (265)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~ 140 (265)
..++. +. ....|+. ..+..+.||+|||||+....++.
T Consensus 70 ---~~me~-l~---~~~d~l~----~~l~~~~~y~l~DtPGQiElf~~ 106 (234)
T pfam03029 70 ---VAMDF-GR---ITLDWLL----EELEYEDDYYLFDTPGQIELFTH 106 (234)
T ss_pred ---HHHHH-HH---HHHHHHH----HHHCCCCCEEEEECCCCEEEEEC
T ss_conf ---99999-99---9999999----98525577699836983576540
No 84
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.57 E-value=2.1e-07 Score=62.66 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=80.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCC
Q ss_conf 87499998088988889999999999998799599998787768011212463334541167630257712102444444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIP 84 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~ 84 (265)
++-||-++ +==|+||||+++-||.++.++|++|+++-+|.......- .+ ..+.+ .-
T Consensus 96 kP~Vim~v-GlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~e-QL----------------~~la~------~~ 151 (433)
T PRK00771 96 KPQTILLV-GLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYE-QL----------------KQLCE------KI 151 (433)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HH----------------HHHHH------HC
T ss_conf 98589997-378897899999999999977994678506788368999-99----------------99998------63
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--C------HHHHHHHCCCCCCCC
Q ss_conf 20001488745775000123222210233322476510278203310133322221--0------112331001111123
Q gi|254780806|r 85 NLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM--N------AMAAADSILVPLQCE 156 (265)
Q Consensus 85 ~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~--~------al~aad~viip~~p~ 156 (265)
++.+.+... ..+......+.+. . ...||+|||||.+-+..-.. . -...-|+++.|+...
T Consensus 152 ~v~~~~~~~-----------~~dp~~i~~~a~~-~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~ 218 (433)
T PRK00771 152 NVPFYGDPK-----------EKDAVKIVKEGLE-K-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDAT 218 (433)
T ss_pred CCCCCCCCC-----------CCCHHHHHHHHHH-H-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 887317889-----------9999999999999-8-45698899977652104099999999998775797689986544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 157 FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 157 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
. . + +.+ ...+.++..+.+-|+|+|+.|...+=.- .-.++...+.|+
T Consensus 219 ~-G-Q------~a~-~~a~~F~~~~~i~gvIlTKlDgdarGGa--aLSi~~~t~~PI 264 (433)
T PRK00771 219 I-G-Q------QAS-EQAKAFKEAVGIGGIIITKLDGTAKGGG--ALSAVAETGAPI 264 (433)
T ss_pred C-C-H------HHH-HHHHHHHHHCCCCEEEEECCCCCCCCCH--HHHHHHHHCCCC
T ss_conf 2-2-6------789-9999998753887379972567887305--421898878995
No 85
>PRK10867 signal recognition particle protein; Provisional
Probab=98.56 E-value=2.3e-07 Score=62.44 Aligned_cols=163 Identities=19% Similarity=0.256 Sum_probs=83.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCH-HHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 687499998088988889999999999998-799599998787768011-212463334541167630257712102444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQGNAST-GLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q~~~~~-~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+...||-++ +==|+||||+++-||.++.. .|++|+++-||.+..... -|. .+.
T Consensus 98 ~~p~VIm~v-GLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~------------------~la------ 152 (453)
T PRK10867 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------------------TLA------ 152 (453)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------------------HHH------
T ss_conf 999699997-4688851858999999999738983798558877058999999------------------999------
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CC------HHHHHHHCCCCC
Q ss_conf 4442000148874577500012322221023332247651027820331013332222--10------112331001111
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT--MN------AMAAADSILVPL 153 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~--~~------al~aad~viip~ 153 (265)
..-++.+.+... ..+......+.+...-...||+|||||.+-+..-. .. -..--|.++.|+
T Consensus 153 ~~~~v~~~~~~~-----------~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~ 221 (453)
T PRK10867 153 EQVGVDFFPSDV-----------GQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVV 221 (453)
T ss_pred HHCCCCEECCCC-----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 851980436788-----------998899999999999977999999978760121088899999998763787137974
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
.... . +. .++.. +.++..+.+-|+|+|+.|...+=.- .=.+....+.|+
T Consensus 222 Da~~-G-Q~---a~~~a----~~F~~~~~~~gvIlTKlDgdarGG~--alS~~~~t~~PI 270 (453)
T PRK10867 222 DAMT-G-QD---AANTA----KAFNEALPLTGVVLTKVDGDARGGA--ALSIRHITGKPI 270 (453)
T ss_pred ECCC-C-HH---HHHHH----HHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHHHCCCC
T ss_conf 3223-5-66---89999----9999855987078750467876138--989999978696
No 86
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.54 E-value=5.6e-07 Score=60.23 Aligned_cols=212 Identities=16% Similarity=0.194 Sum_probs=113.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--HHHCCCCCCCCCCEEEEEECCCCHHHCCCC-
Q ss_conf 68749999808898888999999999999879959999878776801--121246333454116763025771210244-
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS--TGLGIELYDRKYSSYDLLIEEKNINQILIQ- 80 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~--~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~- 80 (265)
-+|.+|-|. +-=|+||||+.--|...|-++|+||.+|=-||-..-| ..|| +...+++.-..
T Consensus 36 GnA~~vG~T-G~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLG---------------Dr~Rm~~~asrk 99 (333)
T TIGR00750 36 GNAHVVGIT-GVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILG---------------DRLRMQRLASRK 99 (333)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHH---------------HHHHHHHHHHHH
T ss_conf 790787664-6888857779999989997659768999887975975514545---------------688775442222
Q ss_pred --CCCCCEEE--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf --44442000--14887457750001232222102333224765102782033101333222210112331001111123
Q gi|254780806|r 81 --TAIPNLSI--IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCE 156 (265)
Q Consensus 81 --~~~~~l~i--ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~ 156 (265)
-..||++| +|+.-.+.+.... ...+.+.| -+-.||+|||-| =|.|..=...+.++|.+|+++-|.
T Consensus 100 qlW~dPg~FIRs~ptrG~lGGls~a-------t~~~~~ll---dA~G~DVI~vET-VGVGQSEVdi~~~aDT~v~v~~pg 168 (333)
T TIGR00750 100 QLWTDPGVFIRSMPTRGSLGGLSKA-------TRELVKLL---DAAGYDVILVET-VGVGQSEVDIINMADTFVVVTIPG 168 (333)
T ss_pred HHHCCCCCEECCCCCCCCHHHHHHH-------HHHHHHHH---HHCCCCEEEEEE-ECCCHHHHHHHHHHCEEEEEECCC
T ss_conf 3322898567677666752578799-------99999999---863898799984-157524878873415058985488
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHC-----CCCCCCCCCCCHHHHHHHHC
Q ss_conf 11-3788875335777655432026774310020231253100112689998808-----52015626786889877737
Q gi|254780806|r 157 FF-ALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLG-----GKVYNTVIPRNVRISEAPSY 230 (265)
Q Consensus 157 ~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~-----~~v~~~~Ip~~~~i~~a~~~ 230 (265)
.= .+++++.-+= ++ . + + +|+|+.|...- .++...++-.|. ..++...-+-|++-.+....
T Consensus 169 ~GDd~Q~iKaG~m---Ei-----a--D-I-~VVNKaD~~~a--~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~ 234 (333)
T TIGR00750 169 TGDDVQGIKAGVM---EI-----A--D-I-YVVNKADGEGA--EEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEI 234 (333)
T ss_pred CCCHHHHHHHHHH---EE-----E--E-E-EEEECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7834666654430---23-----2--4-8-78816887665--8999999998888888999998653333444302655
Q ss_pred CCCEEEECCCC-----HHHHHHHHHHHHHHH
Q ss_conf 98579997999-----899999999999999
Q gi|254780806|r 231 GKPAIIYDLKC-----AGSQAYLKLASELIQ 256 (265)
Q Consensus 231 g~pv~~~~p~s-----~~a~~~~~la~el~~ 256 (265)
+.=--.|+|.= ---+-+.+||+.|.+
T Consensus 235 ~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI~e 265 (333)
T TIGR00750 235 YRREKGWRPPVLKTSAVEGRGIDELWDAIEE 265 (333)
T ss_pred CCHHCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 1101058996388733568871678999999
No 87
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.53 E-value=2.8e-07 Score=62.02 Aligned_cols=170 Identities=20% Similarity=0.251 Sum_probs=88.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CC-CCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 687499998088988889999999999998-79-9599998787768011212463334541167630257712102444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IG-ENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g-~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
.+++|++++ +==||||||+.+-||..+.. .| +||.+|=+|...- ...-. + ++
T Consensus 174 ~~ggV~alV-GPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRI-gAvEQ-------------------L-----kt 227 (404)
T PRK06995 174 ERGGVFALV-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI-GGHEQ-------------------L-----RI 227 (404)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHH-------------------H-----HH
T ss_conf 147558986-6888763758999999999983898379997687547-89999-------------------9-----99
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC------CHHHHH---HHCCCC
Q ss_conf 44420001488745775000123222210233322476510278203310133322221------011233---100111
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM------NAMAAA---DSILVP 152 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~------~al~aa---d~viip 152 (265)
+.+= .+........+ .-|..+|.. + .++|+|||||++ .|+.-. ..|..+ ...++|
T Consensus 228 Ya~I----------lgvPv~vv~~~---~eL~~aL~~-l-~~~dlILIDTaG-rs~rD~~~~e~l~~l~~~~~~~~~~LV 291 (404)
T PRK06995 228 YGKI----------LGVPVHAVKDA---ADLRLALAE-L-RNKHIVLIDTVG-MSQRDRMVSEQIAMLHGAGAPVQRLLL 291 (404)
T ss_pred HHHH----------CCCEEEEECCH---HHHHHHHHH-H-CCCCEEEEECCC-CCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9987----------59559995999---999999997-0-899999980999-897688899999999735788528999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHHHH
Q ss_conf 1123113788875335777655432026774310020231253100112689998808520----1562678688987
Q gi|254780806|r 153 LQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRISE 226 (265)
Q Consensus 153 ~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i~~ 226 (265)
..+.. ..+.+..+ ++.++ .+.+.++|+|+.|....... +++.+.+. +.++ .++.||+|..+++
T Consensus 292 Lsat~-~~~dl~~i---~~~f~-----~~~~~~~I~TKLDEt~~~G~-iln~~~~~-~lPlsy~T~GQ~VPeDi~~A~ 358 (404)
T PRK06995 292 LNATS-HGDTLNEV---VQAYR-----GPGLAGCILTKLDEAASLGG-ALDTVIRH-KLPLHYVSNGQRVPEDLHVAN 358 (404)
T ss_pred ECCCC-CHHHHHHH---HHHHC-----CCCCCEEEEECCCCCCCHHH-HHHHHHHH-CCCEEEECCCCCCCCCHHCCC
T ss_conf 77989-99999999---99844-----69998399830406797239-99999997-898599818995842121089
No 88
>PRK13768 GTPase; Provisional
Probab=98.48 E-value=1.2e-06 Score=58.22 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=79.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC-CCCEE
Q ss_conf 99980889888899999999999987995999987877680112124633345411676302577121024444-44200
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA-IPNLS 87 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~-~~~l~ 87 (265)
+.|+ +--|+||||.+..+...+...|++|.+|-+||.+. .+. ++..-.+.|.+ ++.+++.+.. .||=-
T Consensus 5 ~~Vi-GpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e---~~p---Y~~~iDIRd~i----~~~dVM~~~~LGPNGa 73 (253)
T PRK13768 5 VFFL-GTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVE---YLP---YKPDIDVREYV----SAREIMRKYGLGPNGA 73 (253)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCC---CCCCCCHHHHC----CHHHHHHHHCCCCCHH
T ss_conf 9998-99999889999999999997699759997898665---899---99886378617----8999998819896468
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCH--------HHHHHHCCCCCCCCCHH
Q ss_conf 0148874577500012322221023332247651027820331013332222101--------12331001111123113
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNA--------MAAADSILVPLQCEFFA 159 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~a--------l~aad~viip~~p~~~s 159 (265)
++ .-++. + .....++.+.+.. .+-||+|||||+.+...+... |......+++.--|..-
T Consensus 74 li------~~~e~-l---~~~~d~l~~~i~~---~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~ 140 (253)
T PRK13768 74 LI------ASVDL-L---LTKAEEIKEEIER---LDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVL 140 (253)
T ss_pred HH------HHHHH-H---HHHHHHHHHHHHH---CCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf 99------99999-9---9989999999851---5887599826874432223407999999986368628999845056
Q ss_pred HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 788875335-77765543202677431002023125
Q gi|254780806|r 160 LEGLSQLLE-TVEEVRRTVNSALDIQGIILTMFDSR 194 (265)
Q Consensus 160 ~~~~~~~~~-~i~~~~~~~~~~~~~~~iv~N~~~~~ 194 (265)
......++. .+-.....+.-.++.. .|+|+.|--
T Consensus 141 ~~~~~~fiS~~L~a~s~m~~l~lP~i-nVlsK~Dll 175 (253)
T PRK13768 141 AKDPSDFVSLLLLALSVQLRLGLPQI-PVLNKIDLL 175 (253)
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCCEE-EEEEHHHCC
T ss_conf 37887999999999999997399979-986768627
No 89
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.47 E-value=4.2e-07 Score=60.93 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=85.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
-|.+....-|+||||+|..|..+|.++|++|--.-.-|- .-|+ +.+....+ ....|||
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPD----------YIDP--~~H~~atG----------~~srNLD 59 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPD----------YIDP--GYHTAATG----------RPSRNLD 59 (451)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC----------CCCC--HHHHHHHC----------CCCCCCC
T ss_conf 359954888885899999999999866872166556878----------6381--35667638----------8567776
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC--------CCCCCHHHHHH--HCCCCCCCCC
Q ss_conf 0148874577500012322221023332247651027820331013332--------22210112331--0011111231
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN--------LLTMNAMAAAD--SILVPLQCEF 157 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~--------~~~~~al~aad--~viip~~p~~ 157 (265)
.. +... ..++... ..-..+.|+.||----|+= .-+..-++..- =||.|+..+-
T Consensus 60 ~~------------mm~~----~~v~~~f-~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~ 122 (451)
T COG1797 60 SW------------MMGE----EGVRALF-ARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASG 122 (451)
T ss_pred HH------------HCCH----HHHHHHH-HHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCC
T ss_conf 54------------4699----8999999-98627898799961230236887776777799999985999899995752
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH-HHHHHCCCCCCCCCCCCHHHH
Q ss_conf 13788875335777655432026774310020231253100112689-998808520156267868898
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSD-VRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~-l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
.|-. +..++.-+ +.+.++.++.|+|+||+-+ ..|.+.+.+ +.+..+.++++ +||+++.+.
T Consensus 123 ~s~S-~AAiv~G~----~~fdp~v~iaGVIlNrVgs--erH~~llr~Ale~~~gv~vlG-~lpr~~~l~ 183 (451)
T COG1797 123 LSRS-VAAIVKGF----KHFDPDVNIAGVILNRVGS--ERHYELLRDALEEYTGVPVLG-YLPRDDDLE 183 (451)
T ss_pred HHHH-HHHHHHHH----HHCCCCCCEEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEE-EECCCCCCC
T ss_conf 2578-99999889----8619988257899724777--889999998755327985798-742785567
No 90
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.46 E-value=2.6e-07 Score=62.13 Aligned_cols=41 Identities=37% Similarity=0.545 Sum_probs=37.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 74999980889888899999999999987995999987877
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
++|=-|..+|||||||.+|..||.++...+..+.+||.||-
T Consensus 2 a~IH~vlqgKGGVGKS~va~~LaQY~~~~~~~~~~iDTDpv 42 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSMIAATIAQYKAGKGQKPLCIDTDPV 42 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 75999855888630999999999999835999855608999
No 91
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=1.1e-06 Score=58.41 Aligned_cols=43 Identities=33% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC----CCCEEEEECCCC
Q ss_conf 76874999980889888899999999999987----995999987877
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAI----GENVLLIDLDPQ 46 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~----g~rVllID~D~q 46 (265)
..+.|||++. +==||||||+.+-||..++.. |++|.+|=+|..
T Consensus 171 ~~k~~vi~lV-GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~Dty 217 (388)
T PRK12723 171 NLKKRIFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 5576289998-9988757879999999999862676773799980787
No 92
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.43 E-value=8e-07 Score=59.33 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=61.3
Q ss_pred HCCCCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH
Q ss_conf 10278203310133322--221011233100111112311378-887533577765543202677431002023125310
Q gi|254780806|r 121 TSDFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALE-GLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL 197 (265)
Q Consensus 121 ~~~yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~-~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~ 197 (265)
|+++.+=|||||+..+. .+..+|.++|.+++|+.+.. .++ ++.+ .|+..++. +++.+ +++|+.|....-
T Consensus 68 w~~~kinliDTPG~~DF~~e~~~al~v~D~AviVv~a~~-GVe~~T~~---~w~~a~~~---~iP~i-ifINKmDr~~ad 139 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRK---LFEVCRLR---GIPII-TFINKLDREGRD 139 (267)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHHHHHHCEEEEEECCC-CCCHHHHH---HHHHHHHC---CCCEE-EEEECCCCCCCC
T ss_conf 899899999796977899999999988645479952566-65355899---99999972---99979-998534567898
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 01126899988085201562678
Q gi|254780806|r 198 SQQVVSDVRKNLGGKVYNTVIPR 220 (265)
Q Consensus 198 ~~~~~~~l~~~~~~~v~~~~Ip~ 220 (265)
..+.++++++.||..+++-.+|.
T Consensus 140 f~~~l~~i~~~lg~~~vpi~lPi 162 (267)
T cd04169 140 PLELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 78999999998687751168775
No 93
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.41 E-value=1.5e-06 Score=57.67 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=85.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 68749999808898888999999999999--8799599998787768011212463334541167630257712102444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA--AIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la--~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
++.|||++. +--||||||+.+-||+.+. ...+||.+|-+|... +.....+..+ +++-
T Consensus 201 ~~~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Y-------------a~im------ 259 (407)
T COG1419 201 EQKRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTY-------------ADIM------ 259 (407)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHH-------------HHHH------
T ss_conf 468579998-998875887999999999753257606899714411-5289999999-------------9986------
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCHHH----HH--HHCCCCC
Q ss_conf 44420001488745775000123222210233322476510278203310133--3222210112----33--1001111
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPS--FNLLTMNAMA----AA--DSILVPL 153 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~--~~~~~~~al~----aa--d~viip~ 153 (265)
|+.+. ....+ .-|...+. .-.+||+|+|||.+- .+.....-|. ++ ..+.+++
T Consensus 260 ---~vp~~------------vv~~~---~el~~ai~--~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 260 ---GVPLE------------VVYSP---KELAEAIE--ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred ---CCCEE------------EECCH---HHHHHHHH--HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf ---99559------------96399---99999999--853188899968998833789999999997035662179998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHH-HHCCC--CCCCCCCCCHHHHH
Q ss_conf 123113788875335777655432026774310020231253100112689998-80852--01562678688987
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK-NLGGK--VYNTVIPRNVRISE 226 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~-~~~~~--v~~~~Ip~~~~i~~ 226 (265)
... .-.+++. ..++.++ .+++-++|+|+.|..+....- ++-+.+ .++.. -.++.||+|..+.+
T Consensus 320 sat-~K~~dlk---ei~~~f~-----~~~i~~~I~TKlDET~s~G~~-~s~~~e~~~PV~YvT~GQ~VPeDI~va~ 385 (407)
T COG1419 320 SAT-TKYEDLK---EIIKQFS-----LFPIDGLIFTKLDETTSLGNL-FSLMYETRLPVSYVTNGQRVPEDIVVAN 385 (407)
T ss_pred ECC-CCHHHHH---HHHHHHC-----CCCCCEEEEECCCCCCCHHHH-HHHHHHHCCCEEEEECCCCCCCHHHHCC
T ss_conf 457-6468899---9999724-----588661689713356763389-9999996897499717987870355358
No 94
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=98.36 E-value=1.9e-07 Score=62.93 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=49.4
Q ss_pred CCCCEEEECCCCCCCCCCHH--HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 78203310133322221011--233100111112311378887533577765543202677431002023
Q gi|254780806|r 124 FSYIFLDCPPSFNLLTMNAM--AAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMF 191 (265)
Q Consensus 124 yD~IiiD~pp~~~~~~~~al--~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~ 191 (265)
.||++||+|||.|+..+..+ ...+.+++|++|+..|+..+.|..+++++. +.+++|+|.||.
T Consensus 1 LDyLiiD~PPGTgD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~------~i~ilGiVENMs 64 (81)
T pfam10609 1 LDYLIIDMPPGTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKL------NVPILGIVENMS 64 (81)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHC------CCCEEEEEECCC
T ss_conf 9899994899967899999974885776998098599999999999999984------996189997797
No 95
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.34 E-value=1e-06 Score=58.71 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=62.8
Q ss_pred HCCCCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH
Q ss_conf 10278203310133322--221011233100111112311378-887533577765543202677431002023125310
Q gi|254780806|r 121 TSDFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALE-GLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL 197 (265)
Q Consensus 121 ~~~yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~-~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~ 197 (265)
|+++.+=|||||+..+. .+..+|.++|.+++|+.... .++ ++.+ .++..++. +++.+ +++|+.|....-
T Consensus 61 w~~~~inliDTPG~~DF~~e~~~aL~~~D~AviVv~a~~-GVe~~T~~---~w~~~~~~---~lP~i-~fINKmDre~ad 132 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVA-GVEPQTET---VWRQADRY---NVPRI-AFVNKMDRTGAD 132 (270)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCC-CHHHHHHH---HHHHHHHC---CCCEE-EEEECCCCCCCC
T ss_conf 899899998696967889999999877555999984676-44263699---99889984---99989-999887877887
Q ss_pred HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0112689998808520156267
Q gi|254780806|r 198 SQQVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 198 ~~~~~~~l~~~~~~~v~~~~Ip 219 (265)
..+.++++++.|+.++.+-.+|
T Consensus 133 ~~~~l~~i~~~lg~~~vp~~~P 154 (270)
T cd01886 133 FFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred CHHHHHHHHHHHCCCEEEEEEE
T ss_conf 1668999999858973889856
No 96
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=9e-07 Score=59.03 Aligned_cols=168 Identities=21% Similarity=0.284 Sum_probs=83.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CC-CCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 687499998088988889999999999998-79-9599998787768011212463334541167630257712102444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IG-ENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g-~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+++-|++++ +--||||||+.+-||..++. .| ++|.+|-+|... .|-... -.+.. . |
T Consensus 346 ~~gGv~Alv-GpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyR-----iga~eQ--L~~y~----------~-i--- 403 (557)
T PRK12727 346 ERGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR-----VGGREQ--LHSYG----------R-Q--- 403 (557)
T ss_pred HCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----HHHHHH--HHHHH----------H-H---
T ss_conf 407647874-377767311799999999997399818999726640-----879999--99999----------9-8---
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC------CCCHHHHH---HH-CCC
Q ss_conf 444200014887457750001232222102333224765102782033101333222------21011233---10-011
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLL------TMNAMAAA---DS-ILV 151 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~------~~~al~aa---d~-vii 151 (265)
=|+-+ ....+. .-|...|.. -.++|+|||||.+- ++- ....|... +. +++
T Consensus 404 --lgvpv------------~~~~~~---~~l~~~l~~--l~~~~lvliDTaG~-~~rd~~~~~~~~~l~~~~~~~~~Lvl 463 (557)
T PRK12727 404 --LGIAV------------HEADSA---ESLLDLLER--LRDYKLVLIDTAGM-GQRDRALAAQLNWLRAARQVTSLLVL 463 (557)
T ss_pred --HCCEE------------EEECCH---HHHHHHHHH--HCCCCEEEEECCCC-CCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf --39757------------982899---999999998--36999899949998-84699999999987514776359999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHHHH
Q ss_conf 11123113788875335777655432026774310020231253100112689998808520----1562678688987
Q gi|254780806|r 152 PLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRISE 226 (265)
Q Consensus 152 p~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i~~ 226 (265)
..+.. .+.+.. .++.++ .+.+-|+|+|+.|....... +++.+.++ +.++ -+..||+|..+.+
T Consensus 464 ~a~~~---~~~l~~---~~~~~~-----~~~~~~~i~TKlDE~~~~G~-~l~~~~~~-~lp~~y~t~GQ~VPeDi~~a~ 529 (557)
T PRK12727 464 PANAH---FSDLDE---VVRRFA-----HAKPQGVVLTKLDETGRFGS-ALSVVVDH-QMPITWVTDGQRVPDDLHRAN 529 (557)
T ss_pred ECCCC---HHHHHH---HHHHHC-----CCCCCEEEEEECCCCCCCCH-HHHHHHHH-CCCEEEECCCCCCCCCHHHCC
T ss_conf 68899---899999---999853-----79987489961436787039-99999996-898289758982852364389
No 97
>KOG0781 consensus
Probab=98.32 E-value=9.6e-07 Score=58.85 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=82.3
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 768749999808898888999999999999879959999878776801-1212463334541167630257712102444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS-TGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~-~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
.++..||+|+ +=-||||||.-+-+|+.|.+.+.||++.-||+..+-. --|. +
T Consensus 375 ~krPYvi~fv-GVNGVGKSTNLAKIayWLlqNkfrVlIAACDTFRsGAvEQLr--------------------------t 427 (587)
T KOG0781 375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLR--------------------------T 427 (587)
T ss_pred CCCCEEEEEE-EECCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH--------------------------H
T ss_conf 6897599998-214766513299999999857836999862431244789999--------------------------9
Q ss_pred CCCCEE-ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCCC-
Q ss_conf 444200-014887457750001232222102333224765102782033101333--2222101123310011111231-
Q gi|254780806|r 82 AIPNLS-IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSF--NLLTMNAMAAADSILVPLQCEF- 157 (265)
Q Consensus 82 ~~~~l~-iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~--~~~~~~al~aad~viip~~p~~- 157 (265)
+.++|. +.+....+ |+.- -..+.....++++...-.+.||+|+|||.+-. ++-.+.+| ..++-+..||.
T Consensus 428 Hv~rl~~l~~~~v~l--fekG--Ygkd~a~vak~AI~~a~~~gfDvvLiDTAGRmhn~~~LM~~L---~kl~~~n~pD~i 500 (587)
T KOG0781 428 HVERLSALHGTMVEL--FEKG--YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSL---AKLIKVNKPDLI 500 (587)
T ss_pred HHHHHHHHCCCHHHH--HHHH--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH---HHHHHCCCCCEE
T ss_conf 999998745520488--8610--477828999999999986698789983544334780678999---999744798659
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf -------137888753357776554320267743100202312
Q gi|254780806|r 158 -------FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 158 -------~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
..-..+.++.++=+.+...-.+. .+-+|+++++|.
T Consensus 501 ~~VgEALVG~dsvdq~~~Fn~al~d~~~~r-~iDgilltK~DT 542 (587)
T KOG0781 501 LFVGEALVGNDSVDQLKKFNRALADHSTPR-LIDGILLTKFDT 542 (587)
T ss_pred EEEHHHHHCCHHHHHHHHHHHHHHCCCCCC-CCCEEEEEECCH
T ss_conf 985055527558999999999874489744-234378871250
No 98
>KOG0780 consensus
Probab=98.30 E-value=3.2e-06 Score=55.78 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 76874999980889888899999999999987995999987877
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
+.++-||-|. +=-|+||||++.-||+++.+.|+++++|=+|..
T Consensus 98 K~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF 140 (483)
T KOG0780 98 KGKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF 140 (483)
T ss_pred CCCCCEEEEE-ECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 6897089998-305788630089999999846872457760224
No 99
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.28 E-value=1.9e-06 Score=57.12 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=87.7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
+++.-||.|. +=-||||||+.+-||+.|.+.|++|++.=+|....... + .+.. ...
T Consensus 136 ~~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi----E----------------QL~~---w~e 191 (340)
T COG0552 136 EKKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI----E----------------QLEV---WGE 191 (340)
T ss_pred CCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H----------------HHHH---HHH
T ss_conf 8986799999-34888637179999999997898699982334789999----9----------------9999---999
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCHHHH------------HHH
Q ss_conf 4420001488745775000123222210233322476510278203310133322--22101123------------310
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL--LTMNAMAA------------ADS 148 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~--~~~~al~a------------ad~ 148 (265)
.-|+++|... . ..+......+++....+.+||++||||.+-+-- -.++-|.- -++
T Consensus 192 r~gv~vI~~~---~--------G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e 260 (340)
T COG0552 192 RLGVPVISGK---E--------GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHE 260 (340)
T ss_pred HHCCEEECCC---C--------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 9599278259---9--------9980899999999999769999999675544573668999999999846456899842
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 01111123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 149 ILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 149 viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
++++.... .| .+.+.+.+ .++....+-|+|+|++|...+-. - +=.+...++.|+
T Consensus 261 ~llvlDAt----tG----qnal~QAk-~F~eav~l~GiIlTKlDgtAKGG-~-il~I~~~l~~PI 314 (340)
T COG0552 261 ILLVLDAT----TG----QNALSQAK-IFNEAVGLDGIILTKLDGTAKGG-I-ILSIAYELGIPI 314 (340)
T ss_pred EEEEEECC----CC----HHHHHHHH-HHHHHCCCCEEEEEECCCCCCCC-E-EEEHHHHHCCCE
T ss_conf 89997756----47----56899999-99875288669997024677762-4-350888869997
No 100
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.27 E-value=1.5e-06 Score=57.70 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 027820331013332--222101123310011111231137888753357776554320267743100202312531001
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
+++.+=|||||+..+ ..+..+|.++|.+|+|+.+.. .++. +....++..++. +++.+ +++|+.|....-..
T Consensus 62 ~~~~inliDTPG~~DF~~e~~~aL~v~D~Av~Vida~~-GVe~--~T~~~w~~~~~~---~iP~i-~fINKmDr~~ad~~ 134 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQS-GVEV--GTEKLWEFADEA---GIPRI-IFINKMDRERADFD 134 (268)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CHHH--HHHHHHHHHHHC---CCCEE-EEEECCCCCCCCHH
T ss_conf 99799998698975799999998404783999941875-4768--799999999985---99989-99978787899647
Q ss_pred HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 126899988085201562678
Q gi|254780806|r 200 QVVSDVRKNLGGKVYNTVIPR 220 (265)
Q Consensus 200 ~~~~~l~~~~~~~v~~~~Ip~ 220 (265)
+.++++++.|+.+++.-.+|-
T Consensus 135 ~~l~~i~~~lg~~~vp~~~Pi 155 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPI 155 (268)
T ss_pred HHHHHHHHHHCCCEEEEEEEE
T ss_conf 799999998689849999665
No 101
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.25 E-value=8e-06 Score=53.49 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=40.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1111123113788875335777655432026774310020231253100112689998808520156267
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip 219 (265)
|+|+....-++-. .+-+++.++. ..+++.|+|+|++++....+++..+.+++..+.++++ +||
T Consensus 72 IlV~~~~LG~INh---tlLt~eal~~---~gi~v~G~i~N~~~~~~~~~~~N~~~I~~~t~vPvLG-~vP 134 (134)
T cd03109 72 ILVTSAGLGSINH---AFLTIEAARI---KGIILNGVLGNVIVEKEGLATLNVETIERLTGIPVLG-IVP 134 (134)
T ss_pred EEEECCCCCHHHH---HHHHHHHHHH---CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE-ECC
T ss_conf 9997788785899---9999999998---7992889999467997106787599999974999778-288
No 102
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.24 E-value=1.7e-05 Score=51.62 Aligned_cols=194 Identities=20% Similarity=0.241 Sum_probs=100.9
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECC----CCHHHCCCCC
Q ss_conf 749999808898888999999999999879959999878776801121246333454116763025----7712102444
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEE----KNINQILIQT 81 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~----~~l~~~i~~~ 81 (265)
.|.|-|...-=|||||..+..|+.+|..+|++|...-- .|......=. ..|. -++.-+.+. ..+....++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP-VqsG~~~~~~--~~D~--~~l~~~~~~~~~~~~~~py~f~~ 76 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP-VQTGSEETAE--NSDA--LVLQRLSGLDLSYELINPYRFKE 76 (223)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC-EEECCCCCCC--CCHH--HHHHHHCCCCCCCCCCCCEECCC
T ss_conf 73699982799964999999999999968970598775-2217877899--7459--99998519986633543353078
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCHHHHHH-------HCCCCC
Q ss_conf 4442000148874577500012322221023332247651027820331013332-22210112331-------001111
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFN-LLTMNAMAAAD-------SILVPL 153 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~-~~~~~al~aad-------~viip~ 153 (265)
|.++-++ ++.+ +..-....+...+. .+.+.||+|+|--.+|+- +++.. ...+| -+|+|+
T Consensus 77 --------P~sPhlA-a~~e--g~~I~~~~l~~~l~-~l~~~~d~vlVEGAGGl~vPl~~~-~~~~D~~~~~~lpvILV~ 143 (223)
T COG0132 77 --------PLSPHLA-AELE--GRTIDLEKLSQGLR-QLLKKYDLVLVEGAGGLLVPLTEE-YTFADLAVQLQLPVILVV 143 (223)
T ss_pred --------CCCCHHH-HHHC--CCCCCHHHHHHHHH-HHHCCCCEEEEECCCCEEEECCCC-CCHHHHHHHCCCCEEEEE
T ss_conf --------8884777-8764--89356999987888-540546789996787333325786-529999998099999996
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 12311378887533577765543202677431002023125310011268999880852015626786889
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRI 224 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i 224 (265)
....-++ ...+-+++-++. ..+++.|+|+|++++......+....+.+..+.+++. .+|+....
T Consensus 144 ~~~LGtI---NHtlLt~eal~~---~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~g-~~p~~~~~ 207 (223)
T COG0132 144 GIKLGTI---NHTLLTVEALRA---RGLPLAGWVANGINPELDHYAEINATLLKRIGAPLLG-IIPYLPES 207 (223)
T ss_pred CCCCCHH---HHHHHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCC
T ss_conf 6775778---799999999997---7998789997267885557888899999742897434-05577663
No 103
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.23 E-value=3.9e-06 Score=55.30 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH
Q ss_conf 027820331013332--2221011233100111112311378887-5335777655432026774310020231253100
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLS-QLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS 198 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~ 198 (265)
++|-+=|||||+..+ .-+..+|.++|.+|+|+... .|++ +....++..+.+ +++++ +++|+.|......
T Consensus 77 ~~~~iNliDTPGh~DF~~e~~raL~a~D~Av~Vida~----~GVe~qTe~~w~~~~~~---~iP~i-~FINKmDR~~ad~ 148 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAA----KGVEPQTRKLMEVCRLR---DTPIF-TFINKLDRDGREP 148 (526)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECC----CCCCHHHHHHHHHHHHC---CCCEE-EEEECCCCCCCCH
T ss_conf 8989999909894677899999998737599999777----55233368999998863---99889-9996567678987
Q ss_pred HHHHHHHHHHHCCCCCCCCCC
Q ss_conf 112689998808520156267
Q gi|254780806|r 199 QQVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 199 ~~~~~~l~~~~~~~v~~~~Ip 219 (265)
.+.++++++.||..+.+-.+|
T Consensus 149 ~~~l~ei~~~lg~~~~p~~~P 169 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWP 169 (526)
T ss_pred HHHHHHHHHHHCCCCEEEEEE
T ss_conf 898877888747873688830
No 104
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.20 E-value=2.6e-06 Score=56.32 Aligned_cols=87 Identities=10% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 027820331013332--222101123310011111231137888753357776554320267743100202312531001
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
+++.+-|||||+..+ ..+..+|.++|.+++|+.+..---.++.+ .|+..++. +++.+ +++|+.|....-..
T Consensus 62 ~~~~~n~iDtPG~~dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~---~~~~~~~~---~~P~i-ifiNKmDre~adf~ 134 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRI---LWRLLRKL---NIPTI-IFVNKIDRAGADLE 134 (237)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHH---HHHHHHHC---CCCEE-EEEECCCCCCCCHH
T ss_conf 9987999889884656668988976348169999658882234499---99999985---99859-98624457899999
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 1268999880852015
Q gi|254780806|r 200 QVVSDVRKNLGGKVYN 215 (265)
Q Consensus 200 ~~~~~l~~~~~~~v~~ 215 (265)
+.++++++.|+..++.
T Consensus 135 ~~l~~i~~~l~~~~~p 150 (237)
T cd04168 135 KVYQEIKEKLSSDIVP 150 (237)
T ss_pred HHHHHHHHHHCCCEEE
T ss_conf 9999999997897476
No 105
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.16 E-value=1.9e-06 Score=57.11 Aligned_cols=41 Identities=34% Similarity=0.483 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CC-CCEEEEECCCC
Q ss_conf 87499998088988889999999999998-79-95999987877
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAA-IG-ENVLLIDLDPQ 46 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g-~rVllID~D~q 46 (265)
+.|||+|+ +==||||||+.+=||..++. .| ++|.+|=+|..
T Consensus 193 ~~~vi~lv-GPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~Dty 235 (282)
T TIGR03499 193 QGGVIALV-GPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTY 235 (282)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 67279997-78887578899999999999738996799980777
No 106
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=98.15 E-value=4.6e-06 Score=54.91 Aligned_cols=166 Identities=24% Similarity=0.314 Sum_probs=98.2
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 87687499998088988889999999999998799599998787768011212463334541167630257712102444
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
++++.-||-|+ +==|+||||+-+=||..|.++||+|++.=+|...-... +.|... .
T Consensus 78 ~~~kp~Vil~V-GVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~--------------------EQL~~W---a 133 (284)
T TIGR00064 78 EEKKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAI--------------------EQLEVW---A 133 (284)
T ss_pred CCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH--------------------HHHHHH---H
T ss_conf 47897799998-44088601028899999987499089982752479999--------------------999998---9
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCH-------H---------HH
Q ss_conf 4442000148874577500012322221023332247651027820331013332222101-------1---------23
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNA-------M---------AA 145 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~a-------l---------~a 145 (265)
..-|++||..... ..+......+++....+.+||++||||.+=+- .-.|- . .+
T Consensus 134 ~R~gv~vi~~~~g----------n~DPAaV~fDAi~~Ak~~niDvvliDTAGRLq-nk~NLm~EL~KI~RV~~k~~~~~a 202 (284)
T TIGR00064 134 KRLGVDVIKQKEG----------NADPAAVIFDAIQAAKARNIDVVLIDTAGRLQ-NKVNLMDELKKIKRVIKKVDPVDA 202 (284)
T ss_pred HHHCCEEEECCCC----------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8838755407889----------88717899998999987499789973475454-662039999999998732102578
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 31001111123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 146 ADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 146 ad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
-|++++|..... -.+.+.+. +.++....+-|||+|+.|...+=. +.=.+.+.++.||
T Consensus 203 P~e~lLVlDAt~--------Gqna~~QA-~~F~eav~ltGiiLTKLDg~AKGG--~~l~i~~~l~~Pv 259 (284)
T TIGR00064 203 PDEVLLVLDATT--------GQNALEQA-KVFNEAVGLTGIILTKLDGTAKGG--IILAIAYELKLPV 259 (284)
T ss_pred CCEEEEEEHHHH--------HHHHHHHH-HHHHHHCCCCEEEEECCCCCCHHH--HHHHHHHHHCCCE
T ss_conf 755754220222--------03089999-998654068858996346880378--9998899857976
No 107
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.14 E-value=1.4e-05 Score=52.06 Aligned_cols=123 Identities=23% Similarity=0.245 Sum_probs=72.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
||.+. +-.|+||||+.-.|...+.++|+||.+|=.||...-+-. .+ +.++....+. ...+++.
T Consensus 1 viGit-G~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgG----------al---LGDRiRm~~~---~~~~~vf 63 (148)
T cd03114 1 VIGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGG----------AI---LGDRIRMERH---ASDPGVF 63 (148)
T ss_pred CEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC----------CC---HHHHHHHHHH---CCCCCEE
T ss_conf 97625-899787899999999999978983799996888786686----------20---3235453441---5799836
Q ss_pred EC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCH
Q ss_conf 01--488745775000123222210233322476510278203310133322221011233100111112311
Q gi|254780806|r 88 II--PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFF 158 (265)
Q Consensus 88 ii--pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~ 158 (265)
+- |+...+.+.. ....+.+...-...||+|||.|-+ .+..-......+|..+++..|..-
T Consensus 64 iRs~atrg~~ggla----------~~~~~~i~~l~~~g~D~IiIETvG-vGQse~~i~~~aD~~i~v~~p~~G 125 (148)
T cd03114 64 IRSLATRGFLGGLS----------RATPEVIRVLDAAGFDVIIVETVG-VGQSEVDIASMADTTVVVMAPGAG 125 (148)
T ss_pred EEECCCCCCCCCHH----------HHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHCCEEEEEECCCCC
T ss_conf 86346666542046----------889999999997599989997487-775602655435669999636887
No 108
>KOG1532 consensus
Probab=98.14 E-value=5.6e-06 Score=54.38 Aligned_cols=115 Identities=26% Similarity=0.389 Sum_probs=64.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC-
Q ss_conf 874999980889888899999999999987995999987877-680112124633345411676302577121024444-
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA- 82 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~- 82 (265)
+..+|.|. +=.|+||||+.--|-..+...+.+--+|-+||- .++....+++ |.|.. .-.+.+.+-.
T Consensus 18 ~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniD-------IRDtV----kYkEvMkqY~L 85 (366)
T KOG1532 18 RPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANID-------IRDTV----KYKEVMKQYQL 85 (366)
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCC-------HHHHH----HHHHHHHHHCC
T ss_conf 87079999-44778841399999999862369980886788885488866775-------66543----09999998388
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCH
Q ss_conf 442000148874577500012322221023332247651027820331013332222101
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNA 142 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~a 142 (265)
.||=-|+.+ + ..+....+. ..+.+ ....+++||||||||+.+..++.++
T Consensus 86 GPNGgI~Ts---L----NLF~tk~dq---v~~~i-ek~~~~~~~~liDTPGQIE~FtWSA 134 (366)
T KOG1532 86 GPNGGIVTS---L----NLFATKFDQ---VIELI-EKRAEEFDYVLIDTPGQIEAFTWSA 134 (366)
T ss_pred CCCCCHHHH---H----HHHHHHHHH---HHHHH-HHHHCCCCEEEECCCCCEEEEEECC
T ss_conf 998640335---8----999987899---99999-9742204779974888068998427
No 109
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.11 E-value=4.6e-05 Score=49.07 Aligned_cols=164 Identities=21% Similarity=0.248 Sum_probs=81.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 74999980889888899999999999987995999987877680112124633345411676302577121024444442
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPN 85 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~ 85 (265)
+|.|=+.+.-+|+|||+++..|..+|.++|.||...= |-+..... .....++ +++....+++ +.+
T Consensus 1 arsIyIa~te~~sGKTsVaLGL~~aL~r~g~KVGfFK--PI~q~~~~-----~~~D~~i-~Li~~~~~L~------~~~- 65 (702)
T PRK05632 1 SRTIYLAPTGTGVGLTSVSLGLVRALERKGVKVGFFK--PIAQPRPD-----DGPDRST-ELLRARLGLP------YEE- 65 (702)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCC-----CCCCCHH-HHHHHHCCCC------CCC-
T ss_conf 9369996279998799999999999983688479983--35547888-----9976079-9999855989------533-
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHCCCCCCEEEECCCCC----CCCCCHHHHH---HHCCCCCCCC
Q ss_conf 00014887457750001232222102333224--7651027820331013332----2221011233---1001111123
Q gi|254780806|r 86 LSIIPSTMDLLGIEMILGGEKDRLFRLDKALS--VQLTSDFSYIFLDCPPSFN----LLTMNAMAAA---DSILVPLQCE 156 (265)
Q Consensus 86 l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~--~~l~~~yD~IiiD~pp~~~----~~~~~al~aa---d~viip~~p~ 156 (265)
...+...+..+.+ ......+.+.+. ..+..+||+|||.-....+ ....|+-.+. -.+|+|+.+.
T Consensus 66 ------~i~~s~a~~ll~~-g~~D~LlE~IV~~y~~l~~~~DvVLVEGs~~~~~~~~~~~lNa~IAknLgA~VILV~~~~ 138 (702)
T PRK05632 66 ------PLSLSYAEELLAS-GQLDVLLEEIVARYHALAKDCDVVLVEGLVPTRKHPFALSLNAEIAKNLGAEVILVSSGG 138 (702)
T ss_pred ------CCCHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf ------6078899999868-998999999999999975389989994888788986044335999997699889996389
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCEEECC
Q ss_conf 113788875335777655432--02677431002023125
Q gi|254780806|r 157 FFALEGLSQLLETVEEVRRTV--NSALDIQGIILTMFDSR 194 (265)
Q Consensus 157 ~~s~~~~~~~~~~i~~~~~~~--~~~~~~~~iv~N~~~~~ 194 (265)
..+...+.. .++.....+ ..+.+++|+|+|++++.
T Consensus 139 ~~s~~el~d---~i~ia~~~f~~~k~~~vlGvIiNrv~~~ 175 (702)
T PRK05632 139 NDTPEELAE---RIELAARSFGGAKNANILGVIINKVNAD 175 (702)
T ss_pred CCCHHHHHH---HHHHHHHHHHHCCCCCEEEEEEECCCCH
T ss_conf 999999999---9999999852306997899998479823
No 110
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.98 E-value=1.8e-05 Score=51.42 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=76.1
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
+.++.||=|. +==|+||||++.=||+|+.++|+|+.||=+|... -+-+|=|.. +...|-+|
T Consensus 118 Kgk~~ViMfV-GLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFR--------------AGAFdQLkq--NA~kA~iP-- 178 (453)
T TIGR01425 118 KGKSSVIMFV-GLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFR--------------AGAFDQLKQ--NATKAKIP-- 178 (453)
T ss_pred CCCCEEEEEE-ECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC--------------CCHHHHHHH--HHHHCCCC--
T ss_conf 6882158886-2148871566878777763266432565177542--------------324899987--47644897--
Q ss_pred CCCEEECCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC---CCCCCCHHHH-----HHHCCCCC
Q ss_conf 44200014887457750-001232222102333224765102782033101333---2222101123-----31001111
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIE-MILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSF---NLLTMNAMAA-----ADSILVPL 153 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~-~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~---~~~~~~al~a-----ad~viip~ 153 (265)
+-|.+ .+.| +..+.+ ...+++ .+++|+|||||.+-= ..+...-... =|.+|.|.
T Consensus 179 FYGsy--------~E~DPVkiA~E--Gv~~Fk-------~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVM 241 (453)
T TIGR01425 179 FYGSY--------LESDPVKIASE--GVEKFK-------KEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVM 241 (453)
T ss_pred CCCCC--------CCCCCEEEECC--CHHHHH-------CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 12010--------48987078002--011322-------12784799837987322588889987686334998369980
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC
Q ss_conf 1231--13788875335777655432026774310020231253
Q gi|254780806|r 154 QCEF--FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN 195 (265)
Q Consensus 154 ~p~~--~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~ 195 (265)
.-+. .+...+ +.+...-++-.||+|+.|-..
T Consensus 242 DGsIGQAA~~QA-----------kAFK~~~~vGSvIiTKLDGHA 274 (453)
T TIGR01425 242 DGSIGQAAFSQA-----------KAFKDSVEVGSVIITKLDGHA 274 (453)
T ss_pred CCCHHHHHHHHH-----------HHHHHCCCCEEEEEECCCCCC
T ss_conf 661667889999-----------986300350038875156776
No 111
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=97.93 E-value=3.3e-05 Score=49.85 Aligned_cols=174 Identities=22% Similarity=0.305 Sum_probs=82.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCE-----EEEEC-CCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 999808898888999999999999879959-----99987-8776-8011212463334541167630257712102444
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENV-----LLIDL-DPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rV-----llID~-D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
+.++...-+|||||+|..|=.+|++++++| .= |. ||.= ++.+. .. -.++=..+..+..+.++..+.
T Consensus 2 VviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVGP-DYIDP~fH~~aTG-----r~-sRNLDsF~~~~~~i~~~F~~~ 74 (464)
T TIGR00379 2 VVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVGP-DYIDPSFHTLATG-----RK-SRNLDSFFMSEAQIKELFIRH 74 (464)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC-CCCCCCCCCCCCC-----CC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 7883056875478999999999861863246544258-7437884541147-----86-667685330289999999986
Q ss_pred C-CC--CEEECCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 4-44--200014887457750-0012322221023332247651027820331013332222101123310011111231
Q gi|254780806|r 82 A-IP--NLSIIPSTMDLLGIE-MILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEF 157 (265)
Q Consensus 82 ~-~~--~l~iipa~~~~~~~~-~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~ 157 (265)
. .. .+.||-|-..|-+-- ..--.+.....-..++|.. - +|+++....
T Consensus 75 ~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~------P-----------------------vvLv~n~~~ 125 (464)
T TIGR00379 75 SKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDA------P-----------------------VVLVVNAKR 125 (464)
T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCC------C-----------------------EEEEEECCH
T ss_conf 13478965797274134367688776877518899998659------8-----------------------899995640
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHH
Q ss_conf 1378887533577765543202677431002023125310011268999880-8520156267868898
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNL-GGKVYNTVIPRNVRIS 225 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~-~~~v~~~~Ip~~~~i~ 225 (265)
++ +++..++.-. +.+.++..+.|||+|+|.. .++...+...+.+.. |.+|++ +||+.+.+.
T Consensus 126 L~-~saaAiv~Gy----~~fdp~V~l~GVILN~V~~-~rH~~k~k~A~e~L~Pgi~vlG-~~pR~~~l~ 187 (464)
T TIGR00379 126 LS-RSAAAIVLGY----RSFDPDVKLKGVILNRVGS-ERHLEKLKTAVEKLAPGIEVLG-VIPRKEDLK 187 (464)
T ss_pred HH-HHHHHHHHHH----HHCCCCCEEEEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEE-EEECCCCCC
T ss_conf 33-5786776413----4308983178788731077-4468999999886368945887-773675321
No 112
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.88 E-value=9.7e-05 Score=47.17 Aligned_cols=40 Identities=30% Similarity=0.412 Sum_probs=32.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 99998088988889999999999998799599998787-768
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGN 48 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~ 48 (265)
++.++ +==++||||+|.-||-.+-++|++|.+||+|+ |.+
T Consensus 75 ~vmvv-G~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~e 115 (398)
T COG1341 75 VVMVV-GPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSE 115 (398)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 89998-986767889999999887644741899968999766
No 113
>KOG1533 consensus
Probab=97.81 E-value=1.3e-05 Score=52.33 Aligned_cols=105 Identities=25% Similarity=0.416 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEECCCCC
Q ss_conf 88988889999999999998799599998787768011212463334541167630257712102444444200014887
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSIIPSTM 93 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~iipa~~ 93 (265)
+--|+||||-+..+-..|...|++|.+|-+||- |-.. +++...++.+++ ++.+..-+ +.+=|-+
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa-Nd~~-----~Y~~~v~I~eli----t~edvm~~-----~~LGPNg- 72 (290)
T KOG1533 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA-NDNL-----PYECAVDIRELI----TVEDVMEE-----LGLGPNG- 72 (290)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCC-CCCC-----CCCCCCCHHHHC----CHHHHHHH-----HCCCCCH-
T ss_conf 699998531132099999974896279956876-5678-----887765199971----39999998-----5879961-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 45775000123222210233322476510278203310133322221
Q gi|254780806|r 94 DLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM 140 (265)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~ 140 (265)
+.-..+..-.....||...|.. .++-|++||||+.....+.
T Consensus 73 ---~l~yc~E~l~~~idwl~~~l~~---~~~~Y~lFDcPGQVELft~ 113 (290)
T KOG1533 73 ---ALKYCMEYLEANIDWLLEKLKP---LTDHYVLFDCPGQVELFTH 113 (290)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCCCEEEEEC
T ss_conf ---2799999998544999997452---3474899957982798742
No 114
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.74 E-value=3.3e-05 Score=49.90 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=46.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEE
Q ss_conf 999980889888899999999999987995999987877-6801121246333454116
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSY 65 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~ 65 (265)
||=+ .+=-|+||||+|.-|.-.|.++|+++-++|.|.= -+|..-||....++..++.
T Consensus 21 vlWl-TGLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDnvR~gL~~dLGFS~~DR~eNIR 78 (187)
T TIGR00455 21 VLWL-TGLSGSGKSTIANALEKKLEKKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIR 78 (187)
T ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 9851-168856357999999999996697499975863424778888888567056883
No 115
>PRK00007 elongation factor G; Reviewed
Probab=97.63 E-value=0.00029 Score=44.34 Aligned_cols=89 Identities=10% Similarity=0.159 Sum_probs=55.8
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 27820331013332--222101123310011111231137-888753357776554320267743100202312531001
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFAL-EGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~-~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
.|-+=|||||+..+ ..+..+|.++|.+++++..-. .+ .++.++ |+... ..+++.. +++|+.|.-.....
T Consensus 75 ~~~iNlIDTPGHvDF~~Ev~~aLrv~DgAvlVvDav~-GV~~qT~~v---~r~a~---~~~lp~i-~fINK~Dr~~ad~~ 146 (693)
T PRK00007 75 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFCAVG-GVEPQSETV---WRQAD---KYKVPRI-VFVNKMDRTGADFL 146 (693)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCC-CCCHHHHHH---HHHHH---HCCCCEE-EEEECCCCCCCCHH
T ss_conf 7389999197975248999999998586899998898-877779999---99998---7598969-99979778999989
Q ss_pred HHHHHHHHHHCCCCCCCCCC
Q ss_conf 12689998808520156267
Q gi|254780806|r 200 QVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 200 ~~~~~l~~~~~~~v~~~~Ip 219 (265)
..++++++.++..++..-+|
T Consensus 147 ~~l~~i~~~l~~~~~~~~~p 166 (693)
T PRK00007 147 RVVEQIKDRLGANPVPIQLP 166 (693)
T ss_pred HHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999859976899840
No 116
>PRK07667 uridine kinase; Provisional
Probab=97.37 E-value=0.00036 Score=43.85 Aligned_cols=44 Identities=27% Similarity=0.375 Sum_probs=35.6
Q ss_pred CCCCCCE--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9876874--99998088988889999999999998799599998787
Q gi|254780806|r 1 MEEKKSR--IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 1 ~~~~~~k--vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|++++.. +|+| ++-+|+||||+|-.|+..|...|..|.++-.|-
T Consensus 7 ~~~~~~~r~iIgI-aG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd 52 (190)
T PRK07667 7 MKKHKENRFILGI-DGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 52 (190)
T ss_pred HHHCCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9857598699997-798978899999999999866598379996662
No 117
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=97.36 E-value=0.0019 Score=39.65 Aligned_cols=170 Identities=19% Similarity=0.285 Sum_probs=97.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCC
Q ss_conf 87499998088988889999999999998799599998787768011212463334541167630257712102444444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIP 84 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~ 84 (265)
++++|.+...-.-+||=|++..|..++.++|.++..+=....|=+-.. +.+ .
T Consensus 112 ~~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTGili~g---------~Gv--------~----------- 163 (302)
T pfam07755 112 KAKRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTGILIAG---------YGV--------P----------- 163 (302)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEC---------CEE--------E-----------
T ss_conf 987899960573340789999999999977998479972761368815---------247--------8-----------
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC-----CCCCCCHHHHH--HHCCCCCCCCC
Q ss_conf 200014887457750001232222102333224765102782033101333-----22221011233--10011111231
Q gi|254780806|r 85 NLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSF-----NLLTMNAMAAA--DSILVPLQCEF 157 (265)
Q Consensus 85 ~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~-----~~~~~~al~aa--d~viip~~p~~ 157 (265)
+|-+|++.--...| ... ....++.|+|+|--.+++ +..+...|..| |.+|+.-.|..
T Consensus 164 -iDav~~DFvaGavE--------------~~v-~~~~~~~d~iiIEGQgSL~hP~y~gvsl~lL~Gs~Pd~lIL~H~p~R 227 (302)
T pfam07755 164 -LDAVPADFVAGAVE--------------ALV-LDAAEEDDWIVIEGQGSLSHPAYSGVTLGLLHGSQPDALVLCHRPGR 227 (302)
T ss_pred -ECCCHHHHHHHHHH--------------HHH-HHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCC
T ss_conf -43224766767899--------------999-86454678799916543236656654598860789986999637898
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 13--------7888753357776554320267743100202312531001126899988085201562678
Q gi|254780806|r 158 FA--------LEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPR 220 (265)
Q Consensus 158 ~s--------~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~ 220 (265)
.. +..+...++.++.+.... ++.++.||-+|-..-.....++..+++.+.++.++... +++
T Consensus 228 ~~~~~~~~~~iP~l~~~i~l~e~~a~~~-~~~kvvgIslNt~~l~~~ea~~~~~~~~~~~glPv~Dp-~r~ 296 (302)
T pfam07755 228 KHRRGFPHYPLPPLEEEIELIEALAGTT-PPAKVVGISLNTRGLSEAEAREAIERIEEELGLPVTDP-VRF 296 (302)
T ss_pred CEECCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEC-CCC
T ss_conf 6227876688999899999999973647-99739999955787999999999999999989974712-123
No 118
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00039 Score=43.65 Aligned_cols=60 Identities=32% Similarity=0.329 Sum_probs=45.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877-68011212463334541
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYS 63 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~t 63 (265)
..++.||=|. +=-|+||||+|.-|+..|..+|++|-++|.|.- -++...||.+..++..+
T Consensus 20 ~~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~en 80 (197)
T COG0529 20 GQKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIEN 80 (197)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCCHHHHHHH
T ss_conf 7998599964-688887879999999999975975898557467650057889786789999
No 119
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.14 E-value=0.00095 Score=41.38 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=36.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 749999808898888999999999999879959999878776
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
.|+|+|+ +.-|+||||+...|...|..+|+||..|==|..+
T Consensus 1 mkii~iv-G~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~ 41 (159)
T cd03116 1 MKVIGFV-GYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 9299999-6799999999999999999779859899734767
No 120
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=97.14 E-value=0.0012 Score=40.79 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH-H
Q ss_conf 027820331013332--2221011233100111112311378887533577765543202677431002023125310-0
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL-S 198 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~-~ 198 (265)
+.+.+.|||||+... ..+..++..+|.+++++.+..--.....+ .++.+.. .+ .++. +++|++|.-... .
T Consensus 65 ~~~~i~~iDtPGh~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~---~~~~~~~-~~--~p~i-v~vNKiD~v~~~~~ 137 (185)
T pfam00009 65 KKRHINIIDTPGHVDFTKEMIRGAAQADGAILVVDAVEGVMPQTRE---HLLLAKQ-LG--VPII-VFINKMDRVDDAEL 137 (185)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH---HHHHHHH-HC--CCEE-EEEECCCCCCHHHH
T ss_conf 8936899989987143999999986465642999867685323099---9999998-28--9879-99977327776769
Q ss_pred HHHHHHHHH
Q ss_conf 112689998
Q gi|254780806|r 199 QQVVSDVRK 207 (265)
Q Consensus 199 ~~~~~~l~~ 207 (265)
.+..+++.+
T Consensus 138 ~~~~~e~~~ 146 (185)
T pfam00009 138 DEVVEEISR 146 (185)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 121
>KOG1534 consensus
Probab=97.13 E-value=0.00068 Score=42.22 Aligned_cols=107 Identities=21% Similarity=0.431 Sum_probs=58.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEEC
Q ss_conf 99808898888999999999999879959999878776801121246333454116763025771210244444420001
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSII 89 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ii 89 (265)
.+.-+-.|+||||.+.++-......|+++-+|-+||-+ -.|+++.. -.+.|++ .++++ -+.+++=
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa---e~f~y~~~---iDiRdlI----svdDV-----mEdl~~G 70 (273)
T KOG1534 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA---EHFNYPVT---IDIRDLI----SVDDV-----MEDLDLG 70 (273)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHH---HHHCCCCC---CCHHHHC----CHHHH-----HHHHCCC
T ss_conf 89874678884307899999998628545886268788---86089620---0288752----18888-----8886349
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCEEEECCCCCCCC
Q ss_conf 488745775000123222210233322476510-27820331013332222
Q gi|254780806|r 90 PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTS-DFSYIFLDCPPSFNLLT 139 (265)
Q Consensus 90 pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~-~yD~IiiD~pp~~~~~~ 139 (265)
|-+.-+--+|..+. ...||. ..+.+ +-||+++|||+.+...|
T Consensus 71 PNGgLv~cmEyl~~----NldwL~----~~~Gd~eddylifDcPGQIELyt 113 (273)
T KOG1534 71 PNGGLVYCMEYLLE----NLDWLE----EEIGDVEDDYLIFDCPGQIELYT 113 (273)
T ss_pred CCCCCHHHHHHHHH----HHHHHH----HHCCCCCCCEEEEECCCEEEEEE
T ss_conf 98652038999997----788877----54067567779984798167754
No 122
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.08 E-value=0.0014 Score=40.37 Aligned_cols=203 Identities=17% Similarity=0.155 Sum_probs=96.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCC---CEEEEEE-C---CCCHHHCCC
Q ss_conf 999980889888899999999999987995999987877-6801121246333454---1167630-2---577121024
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKY---SSYDLLI-E---EKNINQILI 79 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~---ti~~~l~-~---~~~l~~~i~ 79 (265)
.|-|...--.+|||++++.|-..++++|++|.=.- +| .++..+ +.+....- .+.+.+. + ....++.+.
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK--~QNMsLNs~--it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLL 78 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFK--SQNMSLNSA--ITPGGGEIGRAQALQALAAGIEPSVHMNPVLL 78 (486)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCH--HHHCCCCCE--ECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 53787214776546752453488873577547870--654346607--87799687550667898739987434287787
Q ss_pred CCCC-CCEEECCCCCCCCCCCCCC-CCCCCCCHHHHHHHH---HHHHCCCCCCEEEECCCCCCCCC-----CHHH---HH
Q ss_conf 4444-4200014887457750001-232222102333224---76510278203310133322221-----0112---33
Q gi|254780806|r 80 QTAI-PNLSIIPSTMDLLGIEMIL-GGEKDRLFRLDKALS---VQLTSDFSYIFLDCPPSFNLLTM-----NAMA---AA 146 (265)
Q Consensus 80 ~~~~-~~l~iipa~~~~~~~~~~l-~~~~~~~~~l~~~l~---~~l~~~yD~IiiD~pp~~~~~~~-----~al~---aa 146 (265)
+... -+..+|--+.........- ... ....+...+. ..+.+.||+|++--.++...... ..+. .+
T Consensus 79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~--~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~ 156 (486)
T COG1492 79 KPCSDTGSQVIVMGKDIGRKSAVEYYQE--GKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIA 156 (486)
T ss_pred EECCCCCEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCEEEEHHC
T ss_conf 0358884479994634466571788999--88999999999998754105589996379823227663661100220233
Q ss_pred HH-CCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 10-011111231----1378887533577765543202677431002023125310011268999880852015626786
Q gi|254780806|r 147 DS-ILVPLQCEF----FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRN 221 (265)
Q Consensus 147 d~-viip~~p~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~ 221 (265)
|. +|+|..=+. .|+.|... .+..... -.+.|+++|++.-...+-...++.|.+..|.++++ ++|+.
T Consensus 157 dapvILV~DIdRGGvfAsl~GT~~------lL~~~~r--~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlG-v~P~~ 227 (486)
T COG1492 157 DAPVILVGDIDRGGVFASLYGTLA------LLPESDR--ALVKGFIINKFRGDESLLDPGLKWLEELTGVPVLG-VLPYL 227 (486)
T ss_pred CCCEEEEEEECCCCEEEEEEEHHE------ECCHHHH--CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ECCCC
T ss_conf 898899995115645417302122------3687676--00147999631798788745999999861974675-65255
Q ss_pred HHHH
Q ss_conf 8898
Q gi|254780806|r 222 VRIS 225 (265)
Q Consensus 222 ~~i~ 225 (265)
....
T Consensus 228 ~~~~ 231 (486)
T COG1492 228 KDAL 231 (486)
T ss_pred CCCC
T ss_conf 5455
No 123
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.08 E-value=0.0013 Score=40.50 Aligned_cols=43 Identities=35% Similarity=0.433 Sum_probs=36.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 749999808898888999999999999879959999878776801
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
..||+=+=+-||+||||+|..+|...+.+|++|.=||.- |.+|
T Consensus 11 ~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTE--GGLS 53 (223)
T TIGR02237 11 RGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTE--GGLS 53 (223)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCH
T ss_conf 035889875899867899999999998618958999628--9832
No 124
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.0015 Score=40.26 Aligned_cols=43 Identities=33% Similarity=0.304 Sum_probs=36.3
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 76874999980889888899999999999987995999987877
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
+.++-||=+. +=-|+||||+|-.|...|...|.+|.++|.|-.
T Consensus 4 ~~kg~viW~T-GLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~l 46 (176)
T PRK05541 4 KPNGYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 8886799978-999998999999999999975997799886899
No 125
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=97.04 E-value=0.0021 Score=39.40 Aligned_cols=41 Identities=32% Similarity=0.333 Sum_probs=33.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCC-CCCC
Q ss_conf 99998088988889999999999998799599-998787-7680
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVL-LIDLDP-QGNA 49 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVl-lID~D~-q~~~ 49 (265)
++.|+ +.-++||||++-.|...+.++|+++. ++|+|+ |+..
T Consensus 2 ~v~i~-G~~~sGKttl~~~L~~~~~~~g~~~~~~~~~d~gq~~~ 44 (122)
T pfam03205 2 IVLVV-GPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHGQGEI 44 (122)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 79999-48999899999999999998799448999899998776
No 126
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=97.02 E-value=0.0025 Score=38.96 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9888899999999999987995999987
Q gi|254780806|r 16 GGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 16 GGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
=|||||-++.+||..+-++|++|...=.
T Consensus 7 T~VGKT~~ss~La~~lk~~G~~~g~~Kp 34 (187)
T TIGR00347 7 TGVGKTVVSSALAKKLKKAGYSVGYYKP 34 (187)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 5861789989999999975985251120
No 127
>PRK12740 elongation factor G; Reviewed
Probab=96.86 E-value=0.00084 Score=41.67 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCCCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 0278203310133322--22101123310011111231137888753357776554320267743100202312531001
Q gi|254780806|r 122 SDFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
++|-+=|||||+..+. .+..+|.++|.+++++..-.-=-.++.++ |+.. ...+++.+ +++|++|......+
T Consensus 58 ~~~~iNlIDTPGHvDF~~EV~~aLrv~DgAvlvVDaveGV~~qT~~v---~r~a---~~~~lp~i-lvINKiDr~~a~~~ 130 (670)
T PRK12740 58 KGHKINIIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEVQTETV---WRYA---EEYGVPRI-AFVNKLDRAGADFR 130 (670)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHH---HHHH---HHCCCCEE-EEEECCCCCCCCHH
T ss_conf 99899999297975148999999998686899997899973789999---9999---98799969-99979789999989
Q ss_pred HHHHHHHHHHCCCCCCCCCC
Q ss_conf 12689998808520156267
Q gi|254780806|r 200 QVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 200 ~~~~~l~~~~~~~v~~~~Ip 219 (265)
+.++++++.|+..++.-.+|
T Consensus 131 ~~l~~i~~~l~~~~~~~~~P 150 (670)
T PRK12740 131 RVLAQLQEALGAPVVPLQLP 150 (670)
T ss_pred HHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999848983579855
No 128
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.84 E-value=0.0022 Score=39.26 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=41.1
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCC
Q ss_conf 768749999808898888999999999999879959999878776-8011212463
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIEL 57 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~ 57 (265)
..++.||=+. +--|+||||+|-.|...|...|.++.++|.|-.. .++.-+|++.
T Consensus 21 ~~kg~viWlT-GLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~l~~dlgfs~ 75 (198)
T PRK03846 21 GHKGVVLWFT-GLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHGLCSDLGFSD 75 (198)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCH
T ss_conf 8998699987-999998899999999999975997599777999874366789899
No 129
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.83 E-value=0.0022 Score=39.28 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=35.3
Q ss_pred CCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8749999808-898888999999999999879959999878
Q gi|254780806|r 5 KSRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
...||+|.|- =||+|||-++.-||..|..+|++|.+|-=.
T Consensus 48 ~vpVI~VGNitvGGtGKTP~v~~la~~l~~~g~~~~IlSRG 88 (334)
T PRK00652 48 PVPVISVGNLTVGGNGKTPVVIWLAEQLQARGVKVGVVSRG 88 (334)
T ss_pred CCCEEEEECEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99899990888788777999999999999769936787346
No 130
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.82 E-value=0.0025 Score=38.90 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCC
Q ss_conf 8749999808898888999999999999879959999878776-8011212463
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIEL 57 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~ 57 (265)
++-||=+. +--|+||||+|-.|...|...|..|.++|.|-.. .+..-+|++.
T Consensus 1 kG~viW~T-GLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~l~~dlgys~ 53 (157)
T pfam01583 1 RGCTVWFT-GLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSE 53 (157)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCH
T ss_conf 98899988-989999999999999999975997799768877501257779898
No 131
>PRK06696 uridine kinase; Validated
Probab=96.80 E-value=0.0031 Score=38.39 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=32.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+|+| .+-.|+||||+|-.|+..|..+|..|++|-.|-
T Consensus 28 ~VgI-dG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Dd 64 (227)
T PRK06696 28 RVAI-DGITASGKTTFANELAEEIKKRGRPVIRASIDD 64 (227)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9997-789987879999999999974699489971544
No 132
>PRK13351 elongation factor G; Reviewed
Probab=96.80 E-value=0.001 Score=41.14 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=58.1
Q ss_pred CCCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 278203310133322--221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.|-+=|||||+..+. .+..+|.++|.+++++....---..+.++++ .. ...+++.. +++|++|.....-+.
T Consensus 72 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgallVVDaveGv~~qT~~v~r---~a---~~~~lp~i-l~iNK~DR~~~d~~~ 144 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVIDAVTGVQPQTETVWE---QA---DKYKIPRL-IFINKMDRVGADLFD 144 (687)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH---HH---HHCCCCEE-EEEECCCCCCCCHHH
T ss_conf 989999809797430999999999878689999789998688999999---99---98799859-999797789987667
Q ss_pred HHHHHHHHHCCCCCCCCCC
Q ss_conf 2689998808520156267
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip 219 (265)
.++++++.|+...+...+|
T Consensus 145 ~l~~i~~~l~~~~~~~~~p 163 (687)
T PRK13351 145 VLEDIEEKFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHCCCEEEEEEC
T ss_conf 7889999848964778600
No 133
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.78 E-value=0.0035 Score=38.07 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=57.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEE
Q ss_conf 99980889888899999999999987995999987877680112124633345411676302577121024444442000
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSI 88 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~i 88 (265)
+....+-=|+|||+++..+++...+.|++|+.|-..- +...++. +-..-++ ++.+.+. .+.+.+
T Consensus 26 ~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~--t~~~~i~-qm~s~g~----------di~~~~~---~G~l~~ 89 (230)
T PRK08533 26 IILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQL--TTTEFIK-QMMSLGY----------DINKKLI---SGKLLY 89 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC--CHHHHHH-HHHHCCC----------CCHHHHH---CCCEEE
T ss_conf 8999868998789999999999987898699999438--9999999-9998699----------8179975---796799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 1488745775000123222210233322476510278203310
Q gi|254780806|r 89 IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDC 131 (265)
Q Consensus 89 ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~ 131 (265)
+|..+-.. ....+...|.+.+...-..+.|+|+||+
T Consensus 90 i~~~~~~~-------~~~~~~~~L~~ll~~~~~~~~dvIIIDS 125 (230)
T PRK08533 90 IPVYPLLS-------GNSEKRDFLDKLMNTRRFYEKDVVIIDS 125 (230)
T ss_pred EECCCCCC-------CHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 96134335-------4045789999997326643798999905
No 134
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.002 Score=39.55 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=53.8
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
+|.+-+||||+..+ ..+..+|.++|.+++|+.+..-=-...+.+ |++..+ .+.+.. +++|++|.-...-..
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv---~rqa~~---~~vp~i-~fiNKmDR~~a~~~~ 147 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV---WRQADK---YGVPRI-LFVNKMDRLGADFYL 147 (697)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCEEECHHHH---HHHHHH---CCCCEE-EEEECCCCCCCCHHH
T ss_conf 6589995799735347787998886165099998878830037999---999865---599759-999784335567335
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 2689998808520
Q gi|254780806|r 201 VVSDVRKNLGGKV 213 (265)
Q Consensus 201 ~~~~l~~~~~~~v 213 (265)
..+++.+.++..+
T Consensus 148 ~~~~l~~~l~~~~ 160 (697)
T COG0480 148 VVEQLKERLGANP 160 (697)
T ss_pred HHHHHHHHHCCCC
T ss_conf 0999999867983
No 135
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.78 E-value=0.0018 Score=39.80 Aligned_cols=39 Identities=36% Similarity=0.371 Sum_probs=34.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9999808898888999999999999879959999878776
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
||+|+ +.=++||||+...|+-.|..+||||.+|==+|.|
T Consensus 1 v~~i~-G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG 39 (165)
T TIGR00176 1 VLQIV-GYKNSGKTTLIERLVKALKARGYRVATIKHDGHG 39 (165)
T ss_pred CEEEE-EECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 93789-6258867899999999997079950898608988
No 136
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.74 E-value=0.0024 Score=38.98 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=34.8
Q ss_pred CEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 749999808-898888999999999999879959999878
Q gi|254780806|r 6 SRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 6 ~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
..||+|.|- =||+|||-++.-||..|.++|++|.+|-=.
T Consensus 51 vPVI~VGNitvGGTGKTP~v~~La~~L~~~G~~~~IiSRG 90 (332)
T PRK00313 51 VPVIVVGNITVGGTGKTPLILWLIEHCRRRGLRVGVVSRG 90 (332)
T ss_pred CCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9899987873588777799999999999779965898646
No 137
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.73 E-value=0.0034 Score=38.16 Aligned_cols=40 Identities=35% Similarity=0.335 Sum_probs=35.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 49999808898888999999999999879959999878776
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
.||+|+ +.-|+||||+...|-..|..+|+||..|==|..+
T Consensus 3 Pii~iv-G~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~ 42 (170)
T PRK10751 3 PLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 42 (170)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 779999-4699999999999999999879849999457778
No 138
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0046 Score=37.38 Aligned_cols=54 Identities=31% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCC
Q ss_conf 68749999808898888999999999999879959999878776-80112124633
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELY 58 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~ 58 (265)
+++-||=+. +--|+||||++-.|...|...|..+.++|.|--. .+..-+|++..
T Consensus 2 ~kg~viWlt-GlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~~l~~~lgfs~~ 56 (175)
T PRK00889 2 QRGVTVWFT-GLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRTNLSKGLGFSKE 56 (175)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHH
T ss_conf 988899988-9899999999999999999869967997768888753678898989
No 139
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=96.65 E-value=0.0031 Score=38.40 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=34.3
Q ss_pred CCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8749999808-89888899999999999987995999987
Q gi|254780806|r 5 KSRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 5 ~~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
...||+|.|- =||+|||-++.-||..|..+|++|.+|-=
T Consensus 34 ~vpVI~VGNit~GGtGKTP~v~~l~~~l~~~g~~~~ilSR 73 (318)
T pfam02606 34 PVPVIVVGNITVGGTGKTPLVIALAELLRARGLRPGVLSR 73 (318)
T ss_pred CCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999898458878589999999999976994478326
No 140
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.63 E-value=0.036 Score=32.15 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998088988889999999999998
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
.+++.-+-||+|||+++..||.+.|.
T Consensus 2 ~v~~l~g~gG~GKS~lal~lAl~vA~ 27 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 38999808998889999999999975
No 141
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.62 E-value=0.0024 Score=39.04 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=40.2
Q ss_pred CCCCCCEEEECCCCCCCCCCH---HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH
Q ss_conf 027820331013332222101---12331001111123113788875335777655432026774310020231253100
Q gi|254780806|r 122 SDFSYIFLDCPPSFNLLTMNA---MAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS 198 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~~~~~~a---l~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~ 198 (265)
+.+.|||+|+|+.- ..+.|. ...||..|+++....--+....+ +. .+-..++. +.+-+.+|++|- -...
T Consensus 85 ~~r~~~i~DaPGH~-~y~rNMitgAs~ad~AilliDa~~G~~~QTrr---H~-~i~~llGI--~~iivaVNKMDl-V~y~ 156 (613)
T PRK05506 85 PKRKFIVADTPGHE-QYTRNMATGASTADLAIILVDARKGVLTQTRR---HS-FIASLLGI--RHIVLAVNKMDL-VDYD 156 (613)
T ss_pred CCEEEEEECCCCHH-HHHHHHHHHHHHCCEEEEEEECCCCCHHHHHH---HH-HHHHHCCC--CEEEEEEECCCC-CCCH
T ss_conf 87059994289679-89989998786538799999888795155189---99-99987298--759999852012-4781
Q ss_pred HHHHHHHHHH
Q ss_conf 1126899988
Q gi|254780806|r 199 QQVVSDVRKN 208 (265)
Q Consensus 199 ~~~~~~l~~~ 208 (265)
++..+++.+.
T Consensus 157 ~~~f~~I~~~ 166 (613)
T PRK05506 157 QEVFDRIVAD 166 (613)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 142
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.54 E-value=0.0052 Score=37.04 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8898888999999999999879959999878776
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
+=-|+||||+|.|+| .++++.|++|-.|-+=
T Consensus 28 GPaG~GKT~LA~hvA---~~r~RPV~l~~Gd~eL 58 (265)
T TIGR02640 28 GPAGTGKTTLAMHVA---RKRDRPVVLINGDAEL 58 (265)
T ss_pred CCCCCCHHHHHHHHH---HHCCCCEEEEECCCCC
T ss_conf 788855689999999---7368968998658232
No 143
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.53 E-value=0.0033 Score=38.23 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 78203310133322--221011233100111112311378-887533577765543202677431002023125
Q gi|254780806|r 124 FSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALE-GLSQLLETVEEVRRTVNSALDIQGIILTMFDSR 194 (265)
Q Consensus 124 yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~-~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~ 194 (265)
|-+=|||||+..+. .+..+|.++|.+|+++.... ++. ++.+ .|+...+ ..++.. +++|++|.-
T Consensus 87 ~~INlIDTPGh~DF~~Ev~~aLrv~DgAvvVvdav~-GV~~qTe~---v~rqa~~---~~~p~i-lfINKmDR~ 152 (730)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-GVMPQTET---VLRQALE---ERVRPV-LFINKVDRL 152 (730)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCEEEEEEECCC-CCCCHHHH---HHHHHHH---CCCCEE-EEEECCCCC
T ss_conf 789998196973059999999988587899997898-87731899---9999987---799979-998686623
No 144
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.50 E-value=0.0068 Score=36.39 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=33.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 49999808898888999999999999879959999878
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
..|+...+--|+||||++.++|...+..|++|+-||+.
T Consensus 23 G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE 60 (224)
T PRK09361 23 GTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTE 60 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 87999989999859999999999999749909996787
No 145
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.48 E-value=0.0045 Score=37.41 Aligned_cols=39 Identities=33% Similarity=0.428 Sum_probs=34.6
Q ss_pred CCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8749999808-89888899999999999987995999987
Q gi|254780806|r 5 KSRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 5 ~~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
...||+|.|- =||+|||-++.-||-.|.++|++|.+|-=
T Consensus 55 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~G~k~~IlSR 94 (339)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSR 94 (339)
T ss_pred CCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999998688768875779999999999976995599854
No 146
>PRK05480 uridine kinase; Provisional
Probab=96.47 E-value=0.0074 Score=36.18 Aligned_cols=41 Identities=39% Similarity=0.467 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 98768749999808898888999999999999879959999878
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
|-.|++=+|+++ +-.|+||||+|-.|+..|. +..|.+|.+|
T Consensus 1 ~~~k~P~iIgIa-G~SgSGKTT~a~~L~~~l~--~~~v~vi~~D 41 (209)
T PRK05480 1 MMMKQPIIIGIA-GGSGSGKTTVASTIYEELG--DESIAVISQD 41 (209)
T ss_pred CCCCCCEEEEEE-CCCCCCHHHHHHHHHHHCC--CCCEEEEECC
T ss_conf 998898899998-9997789999999999808--6875999554
No 147
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.35 E-value=0.0043 Score=37.52 Aligned_cols=58 Identities=31% Similarity=0.377 Sum_probs=38.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CCCCHHHCCCCCCCC
Q ss_conf 76874999980889888899999999999987-995999987877-680112124633345
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQ-GNASTGLGIELYDRK 61 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~q-~~~~~~l~~~~~~~~ 61 (265)
.+++-+|=+. +=-|+||||+|-.|...|.+. |+.|-++|.|.- .+++.-||.+..++.
T Consensus 389 ~~~G~tiwlT-GLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~R~~l~~dLgfs~~dR~ 448 (568)
T PRK05537 389 HKQGFTVFFT-GLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRD 448 (568)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCHHHHH
T ss_conf 4586499984-57888776999999999997189279995468887421557898988999
No 148
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.35 E-value=0.0057 Score=36.83 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=31.8
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 980889888899999999999987995999987877
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
-..+--|+||||++-.|...|...|.++.++|.|--
T Consensus 3 W~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~i 38 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 987999999999999999999986997599774889
No 149
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.33 E-value=0.01 Score=35.32 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=31.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 99998088988889999999999998-79959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D 44 (265)
-+.+..+.=|+||||++.|+|..+|. +|++|+.+=+.
T Consensus 14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE 51 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 18999968999999999999999999779959999333
No 150
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.31 E-value=0.0083 Score=35.88 Aligned_cols=37 Identities=41% Similarity=0.500 Sum_probs=32.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+|+|+ +=-|+||||+|-.|+..|...|.+|.+|-+|-
T Consensus 1 iIgIa-G~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~ 37 (179)
T cd02028 1 VVGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98998-98977899999999999846488539995466
No 151
>PRK12739 elongation factor G; Reviewed
Probab=96.30 E-value=0.0034 Score=38.12 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=56.0
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.|-+=|||||+..+ ..+..+|.++|.+++++..-.-=-..+..++ ++.. ..+++.. +++|+.|.-......
T Consensus 74 ~~~iNLIDTPGHvDF~~EV~~alrv~DgalvvVDaveGV~~qT~~v~---rqa~---~~~lp~i-l~iNKiDR~~ad~~~ 146 (693)
T PRK12739 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVW---RQAD---KYGVPRI-VFVNKMDRIGADFFR 146 (693)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH---HHHH---HCCCCEE-EEEECCCCCCCCHHH
T ss_conf 98999994969740589999999984879999978988767799999---9999---8698969-999797889999899
Q ss_pred HHHHHHHHHCCCCCCCCCC
Q ss_conf 2689998808520156267
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip 219 (265)
.++++.+.++.....-.+|
T Consensus 147 ~~~~i~~~l~~~~~~~~~p 165 (693)
T PRK12739 147 VVEQIKDRLGANAVPIQLP 165 (693)
T ss_pred HHHHHHHHHCCCEEEEECC
T ss_conf 9999999858977999742
No 152
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.0096 Score=35.51 Aligned_cols=37 Identities=35% Similarity=0.453 Sum_probs=32.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999808898888999999999999879959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
-|+-..+--|+||||++..+|...++.|.+|+-||.-
T Consensus 20 ~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7999989999849999999999986369869999665
No 153
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.043 Score=31.70 Aligned_cols=178 Identities=15% Similarity=0.197 Sum_probs=94.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
..+++++.+...---+||-|++..|...+-..|.++..+-.++-+ .|. .+ .++ .+ +++
T Consensus 145 k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg----il~---~~--~gv--------vv-dav---- 202 (339)
T COG3367 145 KVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG----ILI---AD--DGV--------VV-DAV---- 202 (339)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEE----EEE---EC--CCE--------EE-CCH----
T ss_conf 467768999335632104388999999999709863157607604----688---52--746--------75-303----
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCEEEECCCCC----CCCCCHHHH--HHHCCCCCCC
Q ss_conf 4420001488745775000123222210233322476510-27820331013332----222101123--3100111112
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTS-DFSYIFLDCPPSFN----LLTMNAMAA--ADSILVPLQC 155 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~-~yD~IiiD~pp~~~----~~~~~al~a--ad~viip~~p 155 (265)
-.|+..+ ..+.+.-.+++ ++|||+|--..++. ..+...|.. .|.++++-.|
T Consensus 203 --~~DfaAG--------------------ave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P 260 (339)
T COG3367 203 --VMDFAAG--------------------AVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDP 260 (339)
T ss_pred --HHHHHHH--------------------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCEEEEEECC
T ss_conf --6888988--------------------888888876522898799906534347776521433047789769997469
Q ss_pred CCHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 311378887533577765543--2026774310020231253100112689998808520156267868898
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRT--VNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRIS 225 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~--~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~ 225 (265)
......+-...+.-++.+... .-.+.++.++.+|--+-.....++..+++...||.+++++ +.+...+.
T Consensus 261 ~r~~~~g~P~~ip~leevi~l~e~l~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~~Dp-~~~~~d~~ 331 (339)
T COG3367 261 NRKYRDGFPEPIPPLEEVIALYELLSNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPVTDP-LRFGEDVL 331 (339)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHH
T ss_conf 975236798768988998899987167857999924444686889999999864039742263-00214899
No 154
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=96.21 E-value=0.035 Score=32.22 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=27.1
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 876874999980889888899999999999987995999987877
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
++.++=.|++. +|=-|||||+.=.|. |.++.++--=||
T Consensus 4 ~~~ksG~Vaiv-G~PNvGKSTL~N~l~------~~k~siVS~k~~ 41 (296)
T PRK00089 4 EKFKSGFVAIV-GRPNVGKSTLLNALV------GQKISIVSPKPQ 41 (296)
T ss_pred CCCCEEEEEEE-CCCCCCHHHHHHHHH------CCCEEEECCCCC
T ss_conf 89837999999-899988899999996------896176149599
No 155
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=96.20 E-value=0.0033 Score=38.19 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=54.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
.|-+. +|||.||||++=+|- | |+|++|+|.- |..| . +.+|+|
T Consensus 15 ~~lIY-G~~G~GKTS~~K~l~------G-ktL~l~~D~S---SkVL---------------~------------G~~nvd 56 (229)
T TIGR01618 15 RYLIY-GKPGLGKTSTIKYLP------G-KTLVLSLDKS---SKVL---------------A------------GDENVD 56 (229)
T ss_pred EEEEE-CCCCCCCCCEEEECC------C-CEEEEECCCC---CCCC---------------C------------CCCCCE
T ss_conf 68887-589887230566458------8-7898836786---4434---------------6------------899833
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCC-CCCCCHHHHHH
Q ss_conf 01488745775000123222210233322---476510278203310133322221011233100111-11231137888
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKAL---SVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVP-LQCEFFALEGL 163 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l---~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip-~~p~~~s~~~~ 163 (265)
|+-+..+.... ...+.+++ ......+||-|+||- +|.+....|.--+.-=== ..|+...+.-.
T Consensus 57 iim~~~d~~~~----------~~~~~e~~~~~~~~~~~~Y~niViDN---is~lq~~~L~~~gr~~K~~~~p~~q~Y~~~ 123 (229)
T TIGR01618 57 IIMADLDDEKP----------IQEMVEFYKELQNIQAEEYDNIVIDN---ISELQKLWLINLGREAKNGRSPELQHYQKL 123 (229)
T ss_pred EEEEEECCCCC----------HHHHHHHHHHHHCCHHHCCCEEEEEC---HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 89986069984----------78999999997322534576589814---278999999846844245788650003688
Q ss_pred H
Q ss_conf 7
Q gi|254780806|r 164 S 164 (265)
Q Consensus 164 ~ 164 (265)
.
T Consensus 124 ~ 124 (229)
T TIGR01618 124 D 124 (229)
T ss_pred H
T ss_conf 8
No 156
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.18 E-value=0.01 Score=35.36 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=31.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 9998088988889999999999998-79959999878
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLD 44 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D 44 (265)
+.+..+.=|+||||++.|+|..+|. .|++|+.+.+.
T Consensus 21 l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slE 57 (186)
T pfam03796 21 LIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLE 57 (186)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7999967999879999999999999709966875475
No 157
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.14 E-value=0.0057 Score=36.81 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 278203310133322--221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.|-+-|||||+..+. .+..++.++|.+++++....- ++ .+..+.++.... . ++++. +++|+.|..+....+
T Consensus 66 ~~~in~iDtPGh~dF~~~~~~al~~~D~allVVda~~G-v~--~qT~~~~~~a~~-~--~~p~i-vviNKiD~~~ad~~~ 138 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG-VE--AQTLANFYLALE-N--NLEII-PVINKIDLPSADPER 138 (179)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-CC--HHHHHHHHHHHH-C--CCCEE-EEEECCCCCCCCHHH
T ss_conf 14899998998645177898899754427899864778-73--748999999987-6--99889-998655567789999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 2689998808520
Q gi|254780806|r 201 VVSDVRKNLGGKV 213 (265)
Q Consensus 201 ~~~~l~~~~~~~v 213 (265)
+.+++++.+|...
T Consensus 139 v~~~i~~~~g~~~ 151 (179)
T cd01890 139 VKQQIEDVLGLDP 151 (179)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999868897
No 158
>KOG2749 consensus
Probab=96.09 E-value=0.017 Score=34.04 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCC
Q ss_conf 87499998088988889999999999998799599998787-76801
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGNAS 50 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~~~ 50 (265)
++..+.+. +---+||||++--|-.+..++|+|.+.+|+|| |++.+
T Consensus 102 ~GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749 102 YGPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT 147 (415)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEE
T ss_conf 59779998-98765667899999999987178653897479997244
No 159
>PRK12377 putative replication protein; Provisional
Probab=96.08 E-value=0.012 Score=34.95 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=29.8
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 980889888899999999999987995999987
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
|..+.=|+|||-+|+.||..+.+.|++|+.+-+
T Consensus 105 If~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~ 137 (248)
T PRK12377 105 VFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 998999987889999999999987996999889
No 160
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.05 E-value=0.011 Score=35.10 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=34.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 74999980889888899999999999987995999987877
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
.+|+.|+ +.-++||||+.-.|...|..+|+||.+|=-+..
T Consensus 2 ~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 7289999-627997342899999999757937999986587
No 161
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.02 E-value=0.013 Score=34.78 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.++.|.... + =|=||||.|..+|.-.+-+|+||++|-+
T Consensus 2 ~~G~i~iyt-G-~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T pfam02572 2 EKGLLIVYT-G-NGKGKSTAAFGMALRALGHGMRVGVVQF 39 (172)
T ss_pred CCCEEEEEE-C-CCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 763799995-7-9997188999999998259988999999
No 162
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.95 E-value=0.035 Score=32.24 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=57.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEE
Q ss_conf 99980889888899999999999987995999987877680112124633345411676302577121024444442000
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSI 88 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~i 88 (265)
+..+-+--|+|||-++..++|.+...|++|..+-. |-..--++ .+-....++ +.+.+. .+.+.+
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsT--e~T~refi-~qm~sl~yd----------v~~~~l---~G~l~~ 93 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVST--ELTVREFI-KQMESLSYD----------VSDFLL---SGRLLF 93 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE--CHHHHHHH-HHHHHCCCC----------CHHHHH---CCEEEE
T ss_conf 99998889854889999999988708954899984--03599999-988863887----------168775---062689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf 148874577500012322221023332247651027820331013332222
Q gi|254780806|r 89 IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT 139 (265)
Q Consensus 89 ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~ 139 (265)
+|.+.... .++...+...|...+...-.-++|+||||+ +++..
T Consensus 94 ~~~~~~~~-----~~~~~~~~~~L~~l~~~~k~~~~dViIIDS---ls~~~ 136 (235)
T COG2874 94 FPVNLEPV-----NWGRRSARKLLDLLLEFIKRWEKDVIIIDS---LSAFA 136 (235)
T ss_pred EEECCCCC-----CCCHHHHHHHHHHHHHHHHHHCCCEEEEEC---CCHHH
T ss_conf 99324542-----257377899999997557752377899953---43776
No 163
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.94 E-value=0.046 Score=31.52 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 98768749999808898888999999999999-87995999987877680112124633345411676302577121024
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILI 79 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~ 79 (265)
|+=.++++++.. +.=|+||||+=.||+-.|. +.| -+++|.-|-.-.-.. ..+.+..+.=+|+++. ++.+.
T Consensus 13 ~~~~~G~~~aLl-G~NGaGKsTLl~~LnG~LrP~~G--~v~~dG~~l~Ysrkg----L~~~R~~V~~VfQdPD--DQlF~ 83 (190)
T TIGR01166 13 FAVERGEVLALL-GANGAGKSTLLLHLNGLLRPQSG--KVLLDGEPLDYSRKG----LLEVRQRVGLVFQDPD--DQLFA 83 (190)
T ss_pred EEECCCCEEEEE-CCCCCCHHHHHHHHCCCCCCCCC--EEEECCEECCCCCHH----HHHHCCEEEEEEECHH--HHCCC
T ss_conf 022057168987-28998578998874367779755--587678540357244----6752503003762634--42026
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH-----HHHCCCCCC
Q ss_conf 444442000148874577500012322221023332247651027820331013332222101123-----310011111
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA-----ADSILVPLQ 154 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a-----ad~viip~~ 154 (265)
.+..+.+.+=|=+..+.+.|.. .+..++|...-..+|.-=-+-|= |.|.-=+-|++. .|++|+ =+
T Consensus 84 a~V~~DVaFGPlNLGL~e~Ev~--------~RV~eAL~~vg~~~~~~rp~h~L-S~GekkRvAIAGAvAM~Pd~l~L-DE 153 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVE--------RRVREALTAVGISGLEERPTHLL-SGGEKKRVAIAGAVAMRPDVLLL-DE 153 (190)
T ss_pred CCCCCCCCCCCCCCCCCHHHHH--------HHHHHHHHHCCHHHHHHCCHHHC-CCCCHHHHHHHHHHHHCCCEEEE-EC
T ss_conf 7622100335456733715767--------87899998606322441224115-58613577777588616634664-27
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23-113788875335777655432
Q gi|254780806|r 155 CE-FFALEGLSQLLETVEEVRRTV 177 (265)
Q Consensus 155 p~-~~s~~~~~~~~~~i~~~~~~~ 177 (265)
|+ -.+-.|..+++..|+.+++..
T Consensus 154 PTAGLDp~G~~q~~~~l~~L~~~G 177 (190)
T TIGR01166 154 PTAGLDPAGAEQLLAILRRLRAEG 177 (190)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 888978747999999988787239
No 164
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=95.90 E-value=0.0067 Score=36.43 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.+-|-+||||+..+ ..+..++.++|.+|+++....--..++. ..+....+ . +++.. +++|++|.......+
T Consensus 64 ~~~~n~IDtPGH~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~---~~l~~a~~-~--~~~~i-v~iNK~D~~~a~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR---FVLKKALE-L--GLKPI-VVINKIDRPDARPEE 136 (194)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHHH-C--CCCEE-EEEECCCCCCCCHHH
T ss_conf 98899998998477777898776434467898653789758999---99999987-2--99749-988564589888999
Q ss_pred HHHHHHHHH
Q ss_conf 268999880
Q gi|254780806|r 201 VVSDVRKNL 209 (265)
Q Consensus 201 ~~~~l~~~~ 209 (265)
+.+++++.|
T Consensus 137 v~~ei~~~~ 145 (194)
T cd01891 137 VVDEVFDLF 145 (194)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 165
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.90 E-value=0.022 Score=33.46 Aligned_cols=39 Identities=36% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 87499998088988889999999999998-79959999878
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D 44 (265)
.+..+ |..+.=|+||||++.++|..++. .|++|+.+-+.
T Consensus 29 ~GeL~-viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlE 68 (271)
T cd01122 29 KGELI-ILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred CCCEE-EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 98089-99968998699999999999999769908999704
No 166
>PRK06526 transposase; Provisional
Probab=95.89 E-value=0.017 Score=33.99 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 08898888999999999999879959999878
Q gi|254780806|r 13 NQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 13 s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
-++-|+|||-+++.||+...++|++|.-+-++
T Consensus 104 ~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~ 135 (254)
T PRK06526 104 LGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 89999868999999999999869967998779
No 167
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.89 E-value=0.0093 Score=35.58 Aligned_cols=42 Identities=36% Similarity=0.445 Sum_probs=36.4
Q ss_pred CEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 749999808-898888999999999999879959999878776
Q gi|254780806|r 6 SRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 6 ~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
.-||+|.|. =||+|||-++.-||..|.++|.++.++-=.--|
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8789985577778996889999999998669736798057688
No 168
>PRK06749 replicative DNA helicase; Provisional
Probab=95.85 E-value=0.027 Score=32.91 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87499998088988889999999999998799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...++.|++|++.-+..
T Consensus 185 ~g~Livi-aaRPsmGKTa~alnia~~~a~~g~~v~~fSlEM 224 (428)
T PRK06749 185 EGDFVVL-GARPSMGKTAFALNVGLHAAKSGAAVGLFSLEM 224 (428)
T ss_pred CCCEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8868999-627989768999999999996499279983789
No 169
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.82 E-value=0.018 Score=33.93 Aligned_cols=35 Identities=40% Similarity=0.472 Sum_probs=28.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+|+++ +-.|+||||+|-.|+..| .+.+|.+|.+|.
T Consensus 1 iIgI~-G~sgsGKTT~a~~L~~~l--~~~~v~~i~~D~ 35 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHH--CCCCEEEEECCC
T ss_conf 98988-999885999999999980--999858997888
No 170
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.018 Score=33.88 Aligned_cols=37 Identities=32% Similarity=0.420 Sum_probs=31.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 74999980889888899999999999987995999987
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.+=+.+ .++-|||||-+++-+|..+.+.|.+|+.+-.
T Consensus 105 ~~nl~l-~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVL-LGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCCEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 882899-8999987999999999999983984999885
No 171
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.81 E-value=0.02 Score=33.62 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=29.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECC
Q ss_conf 74999980889888899999999999987-9959999878
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLD 44 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D 44 (265)
.+++ ..++-=|+||||++.++.+.-++. |.+++-|=++
T Consensus 24 g~~~-LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~ 62 (501)
T PRK09302 24 GRPT-LVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFE 62 (501)
T ss_pred CCEE-EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9779-99838999999999999999988559978999857
No 172
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.77 E-value=0.019 Score=33.75 Aligned_cols=35 Identities=37% Similarity=0.392 Sum_probs=31.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99808898888999999999999879959999878
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+...+-=|+||||++.++++..++.|.+|+-|-++
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 15876899999999999999998769978999950
No 173
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=95.73 E-value=0.0061 Score=36.64 Aligned_cols=126 Identities=12% Similarity=0.112 Sum_probs=81.6
Q ss_pred CCCCEEEECCC--CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 78203310133--3222210112331001111123113788875335777655432026774310020231253100112
Q gi|254780806|r 124 FSYIFLDCPPS--FNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 124 yD~IiiD~pp~--~~~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
+.+=|||||+. +|=...-+|-+.|.+++.+.+..=-+-.+. ++ +++.+...|+++ +|+|++|....-..++
T Consensus 70 ~~INIvDTPGHADFGGEVERvL~MVDGvlLlVDA~EGPMPQTr----FV--L~KAL~~gLkPI-VViNKiDrp~ARP~eV 142 (609)
T TIGR01394 70 TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTR----FV--LKKALELGLKPI-VVINKIDRPSARPDEV 142 (609)
T ss_pred EEEEEEECCCCCCCCCEEEEECEEEEEEEEEEECCCCCCCCCH----HH--HHHHHHCCCCEE-EEECCCCCCCCCHHHH
T ss_conf 8997781689887886588733024058999857888988534----78--999995689369-9971347887883788
Q ss_pred HHHHHHHHCCCCCCCC--CCCCHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 6899988085201562--6786889877737985799979--9989999999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTV--IPRNVRISEAPSYGKPAIIYDL--KCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~--Ip~~~~i~~a~~~g~pv~~~~p--~s~~a~~~~~la~el~~~~ 258 (265)
.++.-+.|-. + ++- ==.=+.+..|...|..-..+.. ...-++++..|.+-|++..
T Consensus 143 ~d~vFDLF~~-L-gA~deQLDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hv 201 (609)
T TIGR01394 143 VDEVFDLFIE-L-GADDEQLDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHV 201 (609)
T ss_pred HHHHHHHHHH-C-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 7578788885-3-888001012567665236720144665778872201789998986406
No 174
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.67 E-value=0.021 Score=33.58 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=29.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 874999980889888899999999999987995999987
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
++.|... .=-|=||||.|..+|.-.+-+|+||+++-+
T Consensus 2 ~Gli~vy--tG~GKGKTTAAlG~alRA~G~G~rV~ivQF 38 (159)
T cd00561 2 KGLIQVY--TGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred CCEEEEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 8479999--579997089999999998449998999998
No 175
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.67 E-value=0.028 Score=32.84 Aligned_cols=40 Identities=33% Similarity=0.540 Sum_probs=32.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
++..| |..++=|+|||+++.|+|...| +.|++|+.+-+..
T Consensus 193 ~g~Li-IiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEM 233 (421)
T TIGR03600 193 KGDLI-VIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred CCCEE-EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88689-998546787459999999999986698389992579
No 176
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=95.59 E-value=0.013 Score=34.65 Aligned_cols=35 Identities=34% Similarity=0.388 Sum_probs=28.5
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 4999980889888899999999999987-99599998
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAI-GENVLLID 42 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID 42 (265)
+-+|++ .==||||||+-.-+|..||.. |+|+++|=
T Consensus 100 ~SFai~-APTGVGKttFG~~mslflA~kKGkR~y~il 135 (1843)
T TIGR01054 100 DSFAIV-APTGVGKTTFGLVMSLFLAKKKGKRSYIIL 135 (1843)
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 964898-058876779999999998654298789994
No 177
>PRK08181 transposase; Validated
Probab=95.58 E-value=0.025 Score=33.06 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=29.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 08898888999999999999879959999878
Q gi|254780806|r 13 NQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 13 s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
-+.-|+|||-+++.||....++|++|.-+.++
T Consensus 112 ~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~ 143 (269)
T PRK08181 112 FGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 89999878899999999999879939997899
No 178
>PRK06547 hypothetical protein; Provisional
Probab=95.57 E-value=0.022 Score=33.41 Aligned_cols=37 Identities=32% Similarity=0.410 Sum_probs=26.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 768749999808898888999999999999879959999878
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
...+++|+|= +.+|+||||+|..|+..+. + +-+|-+|
T Consensus 12 ~g~~~iVaID-G~sGaGKTTLA~~La~~~~--~--~~vvHmD 48 (184)
T PRK06547 12 GGDMITVLID-GRSGSGKTTLAGELAACWE--G--SQLVHLD 48 (184)
T ss_pred CCCEEEEEEE-CCCCCCHHHHHHHHHHHCC--C--CCEEEEC
T ss_conf 9976999986-8998888999999997457--9--8289705
No 179
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=95.57 E-value=0.012 Score=35.04 Aligned_cols=36 Identities=33% Similarity=0.373 Sum_probs=30.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999808898888999999999999879959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+|+|+ +-.|+||||+|-.|+..|...|.++..+++|
T Consensus 1 iIgIa-G~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d 36 (196)
T pfam00485 1 IIGVA-GSSGAGKTTVARTFVSIFGREGVPAAGIEGD 36 (196)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 98998-9985719999999999966058776412431
No 180
>PRK09183 transposase/IS protein; Provisional
Probab=95.54 E-value=0.026 Score=32.97 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 0889888899999999999987995999987
Q gi|254780806|r 13 NQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 13 s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
-+.-|||||-+|+.||....++|++|+-+.+
T Consensus 107 ~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~ 137 (258)
T PRK09183 107 LGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 137 (258)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 8999986899999999999987993999789
No 181
>PRK05595 replicative DNA helicase; Provisional
Probab=95.53 E-value=0.038 Score=32.04 Aligned_cols=40 Identities=33% Similarity=0.490 Sum_probs=32.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| +.|++|+..-+..
T Consensus 200 ~GdLiii-aaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEM 240 (444)
T PRK05595 200 KGDMILI-AARPSMGKTTFALNIAEYAALREGKSVVIFSLEM 240 (444)
T ss_pred CCCEEEE-EECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 5777999-8579898079999999999986699379995889
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.52 E-value=0.025 Score=33.07 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 980889888899999999999987995999987
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+.++.=|+|||.+|+-+|..|..+|+.|+.+-.
T Consensus 100 lF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~ 132 (242)
T PRK07952 100 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 132 (242)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 997899997899999999999987994999779
No 183
>COG1159 Era GTPase [General function prediction only]
Probab=95.51 E-value=0.092 Score=29.78 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 98768749999808898888999999999999879959999878776
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
|+..++=-+++. ++=-|||||+.=+| .|.++.++--=||.
T Consensus 1 ~~~~ksGfVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QT 40 (298)
T COG1159 1 PMKFKSGFVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQT 40 (298)
T ss_pred CCCCEEEEEEEE-CCCCCCHHHHHHHH------HCCCEEEECCCCCH
T ss_conf 997368999998-69987689999898------56825751598531
No 184
>PRK05748 replicative DNA helicase; Provisional
Probab=95.48 E-value=0.04 Score=31.88 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=32.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
++..|.+ .++=|+|||+++.|+|...| +.|++|+.+-+..
T Consensus 202 ~g~Livi-aaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM 242 (448)
T PRK05748 202 PNDLIIV-AARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM 242 (448)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 6737999-8479987689999999999985698089981778
No 185
>PRK08506 replicative DNA helicase; Provisional
Probab=95.46 E-value=0.042 Score=31.76 Aligned_cols=40 Identities=28% Similarity=0.416 Sum_probs=33.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87499998088988889999999999998799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
++..| |..++=|+|||+++.|+|...+..|+.|++.-+..
T Consensus 192 ~gdLi-IIAARPsmGKTAfAlniA~~~a~~~~~V~~FSLEM 231 (473)
T PRK08506 192 KGDLI-IIAARPSMGKTTLVLNMVLKALNQGKGVAFFSLEM 231 (473)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 56279-99507998678999999999996599658982247
No 186
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.46 E-value=0.03 Score=32.60 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=30.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98088988889999999999998799599998787
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
...+--|+||||++.++|...+..|.+|+.+|..-
T Consensus 3 li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee 37 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99989999899999999999876399799998666
No 187
>PRK07004 replicative DNA helicase; Provisional
Probab=95.43 E-value=0.036 Score=32.16 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=32.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| +.|++|+++-+..
T Consensus 212 ~gdLiII-AARPsmGKTafAlniA~n~A~~~g~~V~~FSLEM 252 (460)
T PRK07004 212 GGELIIV-AGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEM 252 (460)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 7757999-7368764269999999999872588669984779
No 188
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=95.37 E-value=0.014 Score=34.53 Aligned_cols=85 Identities=15% Similarity=0.324 Sum_probs=59.5
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 027820331013332--222101123310011111231137888753357776554320267743100202312531001
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
+.|-+=|||||+..+ -...-+|+||..+|+++.++ +|++. +++.++=-.++.+|+++- |+|+.|=.+..-.
T Consensus 69 e~Y~LNLIDTPGHVDFsYEVSRSLAACEGALL~VDA~----QGvEA--QT~aN~YlAlE~dLeIIP-ViNKIDLP~Adpe 141 (598)
T TIGR01393 69 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAA----QGVEA--QTLANVYLALENDLEIIP-VINKIDLPSADPE 141 (598)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECC----CCHHH--HHHHHHHHHHHCCCEEEE-EECCCCCCCCCHH
T ss_conf 7889964528897212737888888716403561410----32358--889999887561875847-7825368888858
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 12689998808520
Q gi|254780806|r 200 QVVSDVRKNLGGKV 213 (265)
Q Consensus 200 ~~~~~l~~~~~~~v 213 (265)
++.+++++.+|..-
T Consensus 142 ~v~~eIe~~iGld~ 155 (598)
T TIGR01393 142 RVKKEIEEVIGLDA 155 (598)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99998765418896
No 189
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=95.36 E-value=0.025 Score=33.07 Aligned_cols=53 Identities=28% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHCCCCC
Q ss_conf 87499998088988889999999999998799599998787768--0112124633
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGN--ASTGLGIELY 58 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~--~~~~l~~~~~ 58 (265)
.+|++.+. +-=++||||++.++....++.|..++.||..---+ ....+|++..
T Consensus 51 ~GRi~ei~-G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d~~~a~~lGVD~~ 105 (322)
T pfam00154 51 KGRIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDID 105 (322)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHCCCCHH
T ss_conf 87089998-89877789999999999973499389985366059889998098802
No 190
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.33 E-value=0.02 Score=33.62 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 768749999808898888999999999
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLST 29 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~ 29 (265)
...-+||+|. +-||+||||+|-.+-.
T Consensus 16 ~~~~~vI~I~-G~gGiGKTtLA~~v~~ 41 (285)
T pfam00931 16 SENLGVVGIV-GMGGVGKTTLAKQIYN 41 (285)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHC
T ss_conf 9895399988-9995639999999971
No 191
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.25 E-value=0.019 Score=33.74 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.|-+=|||||+..+ -....+|.++|.+++++.... |+.. .++..+......+++++ .|+|++|-......+
T Consensus 73 ~y~lNLIDTPGHVDF~~EVsRSL~aceGalLlVDa~q----GVqa--QT~an~~~A~~~~L~iI-pviNKIDlp~Ad~e~ 145 (601)
T PRK05433 73 TYQLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ----GVEA--QTLANVYLALENDLEII-PVLNKIDLPAADPER 145 (601)
T ss_pred EEEEEEECCCCCCCCCEEEEEEHHHCCCEEEEEECCC----CCCC--HHHHHHHHHHHCCCCEE-EEEECCCCCCCCHHH
T ss_conf 7999985489856645045560334072599997687----8560--06999999998799657-778614688899899
Q ss_pred HHHHHHHHHCC
Q ss_conf 26899988085
Q gi|254780806|r 201 VVSDVRKNLGG 211 (265)
Q Consensus 201 ~~~~l~~~~~~ 211 (265)
+.+++.+.+|.
T Consensus 146 v~~qi~~~igl 156 (601)
T PRK05433 146 VKQEIEDIIGI 156 (601)
T ss_pred HHHHHHHHHCC
T ss_conf 99999988689
No 192
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=95.24 E-value=0.033 Score=32.39 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=32.6
Q ss_pred CCCCEEEEEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 76874999980---88988889999999999998799599998
Q gi|254780806|r 3 EKKSRIITIAN---QKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 3 ~~~~kvI~v~s---~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
++++|.|.|.. ..-|-||||+++.|+-+|++.|+++.+-=
T Consensus 51 ~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~l 93 (577)
T PRK13506 51 QPKGKLVIVTAVTPTPLGEGKTVTTIGLTQGLNALGQKVCACI 93 (577)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8996499998568988989841109879999987198458997
No 193
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=95.24 E-value=0.044 Score=31.67 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=30.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4999980889888899999999999987995999987
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+-|.+ .+.-|+|||-+++.+|..+.++|++|+-+-+
T Consensus 48 ~Nlll-~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~ 83 (178)
T pfam01695 48 ENLLL-LGPPGVGKTHLACALGHQACRAGYSVLFTRT 83 (178)
T ss_pred CCEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 76899-8999987899999999999986985999961
No 194
>PRK04328 hypothetical protein; Provisional
Probab=95.21 E-value=0.046 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=32.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999808898888999999999999879959999878
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+...++--|+||||++.++++.-++.|.+++.|-++
T Consensus 26 ~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~e 61 (250)
T PRK04328 26 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 61 (250)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 999982899998999999999998769977999972
No 195
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.038 Score=32.01 Aligned_cols=36 Identities=44% Similarity=0.629 Sum_probs=26.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH----CCC------CEEEEEC
Q ss_conf 99998088988889999999999998----799------5999987
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAA----IGE------NVLLIDL 43 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~----~g~------rVllID~ 43 (265)
+.++.-+-||+||||+..-|..+++. .|+ +|+.|-|
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvsl 135 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSL 135 (402)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 0589844886237689999999998647774533558880799982
No 196
>PRK07263 consensus
Probab=95.18 E-value=0.059 Score=30.92 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=32.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| +.|++|+.+-+..
T Consensus 202 ~GdLivi-aaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEM 242 (453)
T PRK07263 202 PDQLIIL-AARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEM 242 (453)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 7868999-7278884789999999999985598289992469
No 197
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=95.05 E-value=0.038 Score=31.99 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=26.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999808898888999999999999879959999
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
||+|. ||=||||+-..||..+..+|+||++-
T Consensus 1 VIs~V---GaGGKTS~m~~LA~e~~~~G~~VlvT 31 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred CEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98998---89879999999999998769909998
No 198
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.03 E-value=0.058 Score=30.94 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 874999980889888899999999999987995999987
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
++.|... .=-|=||||.|..+|.-.+-+|+||+++-+
T Consensus 21 kGlI~VY--TGdGKGKTTAAlGlalRA~G~G~rV~ivQF 57 (178)
T PRK07414 21 EGLVQVF--TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CCEEEEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 4179999--579998089999999999539987999997
No 199
>PRK08082 consensus
Probab=95.02 E-value=0.065 Score=30.66 Aligned_cols=40 Identities=30% Similarity=0.516 Sum_probs=32.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| +.|++|++.-+..
T Consensus 202 ~g~Livi-aaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM 242 (453)
T PRK08082 202 RNDLIIV-AARPSVGKTAFALNIAQNVATKTDENVAIFSLEM 242 (453)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 5857999-8678875789999999999985599489973138
No 200
>PRK05636 replicative DNA helicase; Provisional
Probab=94.98 E-value=0.069 Score=30.52 Aligned_cols=40 Identities=20% Similarity=0.417 Sum_probs=32.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| +.|++|++.-+..
T Consensus 266 ~G~LiIi-AARPsmGKTalAlnia~n~A~~~g~~v~~fSLEM 306 (507)
T PRK05636 266 GGQMIIV-AARPGVGKSTIALDFMRSASIKNNKASVIFSLEM 306 (507)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 3567999-7378786689999999999987699379971569
No 201
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.97 E-value=0.064 Score=30.69 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=34.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87499998088988889999999999998799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+.+++.| ++-=|+|||+++.++++..++.|.+|+.|-+|-
T Consensus 22 ~g~~~lI-~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 22 RGSVVLI-TGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 9978999-938998689999999997762698589999206
No 202
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.95 E-value=0.26 Score=27.12 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=25.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999808898888999999999999879959999878
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+++.++==|+||||+--||..... |+|+++|=-+
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNE 36 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNE 36 (323)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC--CCEEEEEEEC
T ss_conf 799811677998999999985458--9807999855
No 203
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.92 E-value=0.05 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=34.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4999980889888899999999999987995999987
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
-+|+|....-|+|||+++.-+|..|..+|+||++|-.
T Consensus 127 PviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 127 PVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 5599997236655678889999999866982379955
No 204
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.92 E-value=0.078 Score=30.18 Aligned_cols=53 Identities=32% Similarity=0.418 Sum_probs=38.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHCCCCC
Q ss_conf 87499998088988889999999999998799599998787768--0112124633
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGN--ASTGLGIELY 58 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~--~~~~l~~~~~ 58 (265)
.+|++.+. +.=++||||++.++....++.|..|+.||..---+ .-..+|++..
T Consensus 54 ~GRivei~-G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~~~a~~lGVD~~ 108 (325)
T cd00983 54 KGRIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLD 108 (325)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHHHHCCCCHH
T ss_conf 88089998-89877799999999999873598399996254259899998099846
No 205
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=94.91 E-value=0.056 Score=31.02 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=32.6
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 876874999980889888899999999999987995999987
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
|.++=+||.|. |==||||+|.-++..|.+.|+|+.+|-.
T Consensus 84 Ps~~l~viGvT---GTNGKTtt~~li~~~l~~~G~~tgliGT 122 (494)
T TIGR01085 84 PSKKLKVIGVT---GTNGKTTTTSLIAQLLELLGKKTGLIGT 122 (494)
T ss_pred CCCCEEEEEEE---ECCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 55251689997---1287448999999999867970899865
No 206
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=94.89 E-value=0.044 Score=31.64 Aligned_cols=51 Identities=27% Similarity=0.460 Sum_probs=35.9
Q ss_pred CCCCEEEEEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCC
Q ss_conf 76874999980---889888899999999999987995999987877680112124
Q gi|254780806|r 3 EKKSRIITIAN---QKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGI 55 (265)
Q Consensus 3 ~~~~kvI~v~s---~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~ 55 (265)
++.+|.|-|.. ..-|-||||+++.|+-+|.+.|+++.+-== |.|+.-.||+
T Consensus 51 ~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~lR--ePSlGP~FGi 104 (556)
T PRK13505 51 KKDGKLILVTAINPTPAGEGKTTVTVGLGDALNKIGKKTVIALR--EPSLGPVFGI 104 (556)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE--CCCCCCCCCC
T ss_conf 89963999984588888888630179899999871874379973--5887873166
No 207
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.87 E-value=0.054 Score=31.13 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87687499998088988889999999999998799599998
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
.++..|+|+|. |--||||+|..+++.|...|+++.+.-
T Consensus 106 ~~~~~~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~~G 143 (445)
T PRK04308 106 NRRGDKVIAIT---GSNGKTTVTSLVGYLCIKCGLDTVIAG 143 (445)
T ss_pred HCCCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 41699579994---899837799999999997599629985
No 208
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=94.83 E-value=0.045 Score=31.56 Aligned_cols=40 Identities=33% Similarity=0.466 Sum_probs=32.1
Q ss_pred CCCCEEEEEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 76874999980---88988889999999999998799599998
Q gi|254780806|r 3 EKKSRIITIAN---QKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 3 ~~~~kvI~v~s---~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
+..+|.|.|.+ ..-|-||||+++.|+-+|.+.|+++.+-=
T Consensus 35 ~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~~gk~~~~~l 77 (524)
T cd00477 35 RPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIACL 77 (524)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8995599998468888888853109989999987366314886
No 209
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.78 E-value=0.096 Score=29.67 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=28.2
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 74999980889888899999999999987995999987
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.|=+= ..+.-|||||-+++-+|-.|+++|+.|+++-.
T Consensus 157 ~kGly-l~G~~G~GKTyL~~aian~La~~g~~v~~v~~ 193 (306)
T PRK08939 157 VKGLY-LYGDFGVGKTYLLAAIANELAKKGVSSTLVHF 193 (306)
T ss_pred CCEEE-EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 87788-98999998999999999999986992999875
No 210
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=94.74 E-value=0.04 Score=31.86 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=32.3
Q ss_pred CCCCEEEEEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 76874999980---88988889999999999998799599998
Q gi|254780806|r 3 EKKSRIITIAN---QKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 3 ~~~~kvI~v~s---~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
+.++|-|.|.+ ..-|-||||+++.|+-+|++.|+++.+-=
T Consensus 51 ~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~l 93 (555)
T pfam01268 51 RPDGKLILVTAITPTPAGEGKTTTTIGLGQALNRLGKKAIAAL 93 (555)
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCEEEEE
T ss_conf 8985399998457888888863023659999986287436897
No 211
>PRK08694 consensus
Probab=94.70 E-value=0.077 Score=30.23 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=32.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 87499998088988889999999999998799-599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGE-NVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~-rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...|..|+ +|++.-+..
T Consensus 217 ~G~LiVI-aaRPsmGKTalalnia~~~a~~~~~~V~~fSLEM 257 (468)
T PRK08694 217 PGDLIIV-AGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEM 257 (468)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 7847999-6178653789999999999984798479977889
No 212
>PRK08840 replicative DNA helicase; Provisional
Probab=94.69 E-value=0.087 Score=29.91 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=32.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| ..|++|++.-+..
T Consensus 216 ~G~Livi-aaRPsmGKTalalnia~n~a~~~~~~v~~fSlEM 256 (464)
T PRK08840 216 GSDLIIV-AARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEM 256 (464)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 5767999-8379873689999999999996599679976779
No 213
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.67 E-value=0.11 Score=29.22 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCC
Q ss_conf 49999808898888999999999999879--9599998787
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIG--ENVLLIDLDP 45 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g--~rVllID~D~ 45 (265)
.+|++ .+-.|+||||+|-.|+..|.+.+ ..+.++-+|.
T Consensus 35 ~lIgI-aG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDG 74 (230)
T PRK09270 35 TVVGI-AGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDG 74 (230)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 89999-89998899999999999986237998579973653
No 214
>KOG0635 consensus
Probab=94.62 E-value=0.083 Score=30.03 Aligned_cols=55 Identities=35% Similarity=0.398 Sum_probs=39.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHCCCCCCC
Q ss_conf 8749999808898888999999999999879959999878776-8011212463334
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG-NASTGLGIELYDR 60 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~-~~~~~l~~~~~~~ 60 (265)
++=||=+. +=.|+||||+++.|..+|.++|+-...+|.|.-. .+..-|+....++
T Consensus 30 kGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR 85 (207)
T KOG0635 30 KGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDR 85 (207)
T ss_pred CCCEEEEE-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 99689974-257788025999999999865865898548540104344567650334
No 215
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=94.62 E-value=0.054 Score=31.13 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCCEEEEEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 76874999980---88988889999999999998799599998
Q gi|254780806|r 3 EKKSRIITIAN---QKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 3 ~~~~kvI~v~s---~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
+..+|-|.|.+ ..-|-||||+++.|+-+|.+.|+++.+-=
T Consensus 60 ~~~gklILVTaitPTP~GEGKTTttIGL~~aL~~lgkk~~~~l 102 (587)
T PRK13507 60 RPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVGGAI 102 (587)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8996399998468888889862105629999986088258997
No 216
>PRK09401 reverse gyrase; Reviewed
Probab=94.61 E-value=0.045 Score=31.62 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=30.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7499998088988889999999999998799599998
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
++-+++. .=-|+||||+-.-+|.++|+.|+|+++|=
T Consensus 93 g~SFaii-APTG~GKTtfgl~~sly~a~kgkks~~i~ 128 (1176)
T PRK09401 93 GESFAII-APTGVGKTTFGLVMALYLAKKGKKSYIIF 128 (1176)
T ss_pred CCCEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8974898-88998888999999999986598399996
No 217
>PRK10218 GTP-binding protein; Provisional
Probab=94.49 E-value=0.029 Score=32.68 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=48.6
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 027820331013332--222101123310011111231137888753357776554320267743100202312531001
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
++|-+=|||||+..+ -.+..+|.++|.+++++....--..+.. ..+++....+++++ +++|++|.......
T Consensus 66 ~~~~iNiIDTPGH~DF~gEVeR~L~~~DGalLvVDA~eGv~pQT~------~V~~~Al~~~l~~I-vvINKiDr~~A~~~ 138 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR------FVTKKAFAYGLKPI-VVINKVDRPGARPD 138 (607)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHH------HHHHHHHHCCCCEE-EEECCCCCCCCCHH
T ss_conf 878997865998543014889789766848999978878624589------99999998799759-97216676655357
Q ss_pred HHHHHHHHHH
Q ss_conf 1268999880
Q gi|254780806|r 200 QVVSDVRKNL 209 (265)
Q Consensus 200 ~~~~~l~~~~ 209 (265)
++.+++.+.|
T Consensus 139 ~V~~ei~dlf 148 (607)
T PRK10218 139 WVVDQVFDLF 148 (607)
T ss_pred HHHHHHHHHH
T ss_conf 8999999887
No 218
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.48 E-value=0.095 Score=29.69 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=32.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999808898888999999999999879959999878
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+...++-=|+|||+++..+++..+++|.+++.|-++
T Consensus 34 ~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~e 69 (241)
T PRK06067 34 LILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTE 69 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 899980799887999999999998679829999942
No 219
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.096 Score=29.67 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=32.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 749999808898888999999999999879959999878
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
++|+=|+ +=.|+||||+|.+++...+..|.+++.||.-
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 3589984-6887654668999988865379808999589
No 220
>PRK09165 replicative DNA helicase; Provisional
Probab=94.44 E-value=0.12 Score=29.04 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCC
Q ss_conf 87499998088988889999999999998---------------799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAA---------------IGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~---------------~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...|+ .|+.|+++-+..
T Consensus 204 ~GdLiII-AARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEM 258 (484)
T PRK09165 204 PSDLIIL-AGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEM 258 (484)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 7737999-607999778999999999998741022223321136898489994779
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.42 E-value=0.066 Score=30.62 Aligned_cols=39 Identities=36% Similarity=0.407 Sum_probs=31.5
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 4999980889888899999999999987995999987877
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
+.+.+ .+.-|+||||++..+|..+...++.|..++++..
T Consensus 3 ~~ill-~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~ 41 (148)
T smart00382 3 EVILI-VGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
T ss_conf 78999-9999702999999999872668996899875998
No 222
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=94.41 E-value=0.11 Score=29.44 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=25.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHH----CCCC-EEEEECCCC
Q ss_conf 98088988889999999999998----7995-999987877
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAA----IGEN-VLLIDLDPQ 46 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~----~g~r-VllID~D~q 46 (265)
|.-+|=|||||.+|-++.-.|.. .|-+ |..+-.+.|
T Consensus 47 ~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~ 87 (383)
T TIGR02928 47 FIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQ 87 (383)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 88788898788999999999999862269971589997785
No 223
>PRK08116 hypothetical protein; Validated
Probab=94.34 E-value=0.081 Score=30.09 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.3
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 980889888899999999999987995999987
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+..+.=|+|||-+++.+|..|...|+.|+.+..
T Consensus 112 ll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~ 144 (262)
T PRK08116 112 LLWGSPGNGKTYLAAAIANELIEKGVPVVFVNV 144 (262)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 998989998999999999999987993999889
No 224
>PRK08760 replicative DNA helicase; Provisional
Probab=94.14 E-value=0.14 Score=28.68 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8749999808898888999999999999-8799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...| +.|+.|+++-+..
T Consensus 228 ~G~LiVi-aaRPsmGKTalalnia~~~A~~~~~~V~~fSLEM 268 (476)
T PRK08760 228 PTDLIIL-AARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7777999-8778874789999999999983799789970369
No 225
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.018 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=24.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCC
Q ss_conf 68749999808898888999999999999-879
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIG 35 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g 35 (265)
+.++.+++. ++-|+||||+..-|+-.++ ..|
T Consensus 345 ~~g~~talv-G~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 345 KAGQLTALV-GASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 489679998-89999789999998475777784
No 226
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.11 E-value=0.036 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=24.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
++++++++. ++-|+||||+.--|....-..| ++ .||.
T Consensus 374 ~~Ge~vaIV-G~SGsGKSTl~~LL~g~~p~~G-~I-~i~g 410 (588)
T PRK11174 374 PAGQRVALV-GPSGAGKTSLLNALLGFLPYQG-SL-KING 410 (588)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHCCCCC-EE-EECC
T ss_conf 499789998-9998649999999987289883-89-9999
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.07 E-value=0.12 Score=29.07 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=29.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC------CCEEEEECC
Q ss_conf 9999808898888999999999999879------959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIG------ENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g------~rVllID~D 44 (265)
.|+-..+-.|+|||+++.++|...+..| .+|+-||..
T Consensus 20 ~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE 62 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 3999999999989999999999985422116999619999557
No 228
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.14 Score=28.76 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=29.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87499998088988889999999999998799599998
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
.+|+|+|. |--||||+|..+++.|...|+++.+.-
T Consensus 114 ~~k~IaVT---GTNGKTTTt~ll~~iL~~~g~~~~~~G 148 (468)
T PRK04690 114 VPGAVCVT---GTKGKSTTTALLAHLLRAAGHRTALVG 148 (468)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 78789996---998589999999999985799828986
No 229
>KOG0462 consensus
Probab=94.02 E-value=0.064 Score=30.69 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 2782033101333--22221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSF--NLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~--~~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.|-.=+||||+.. +-...-.|.++|.+++++....- ++ . .++..+...+..++.+. .|+|++|-.+....+
T Consensus 124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG-vq--A---QT~anf~lAfe~~L~iI-pVlNKIDlp~adpe~ 196 (650)
T KOG0462 124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG-VQ--A---QTVANFYLAFEAGLAII-PVLNKIDLPSADPER 196 (650)
T ss_pred CEEEEEECCCCCCCCCCEEHEHHHHCCCEEEEEECCCC-CH--H---HHHHHHHHHHHCCCEEE-EEEECCCCCCCCHHH
T ss_conf 32887505898555541000126535715999976768-12--8---89999999998597488-865315789889899
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 2689998808520
Q gi|254780806|r 201 VVSDVRKNLGGKV 213 (265)
Q Consensus 201 ~~~~l~~~~~~~v 213 (265)
+...+.+.|+.+.
T Consensus 197 V~~q~~~lF~~~~ 209 (650)
T KOG0462 197 VENQLFELFDIPP 209 (650)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999866896
No 230
>PRK08006 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.17 Score=28.20 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=32.5
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 87499998088988889999999999998-799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...|. .|++|+++-+..
T Consensus 223 ~G~Livi-aaRPsmGKTalalnia~~~a~~~~~~V~~fSlEM 263 (471)
T PRK08006 223 PSDLIIV-AARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM 263 (471)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 1738999-9469987699999999999986699579981679
No 231
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=93.90 E-value=0.033 Score=32.39 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHH
Q ss_conf 27820331013332--222101123310011111231137888753357776554320267743100202312531-001
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNS-LSQ 199 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~-~~~ 199 (265)
.+.+.+||||+... ..+..++..+|.+++++....---....+ .++..+. .+. ++. +++|++|.-.. ...
T Consensus 61 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~---~~~~~~~-~~~--p~i-v~iNKiD~~~~~~~~ 133 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTRE---HLRIARE-GGL--PII-VAINKIDRVGEEDLE 133 (189)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHHH-CCC--CEE-EEEECCCCCCHHHHH
T ss_conf 989999969981889999999986468569999879899878999---9999997-699--879-999897187756299
Q ss_pred HHHHHHHHHHCC
Q ss_conf 126899988085
Q gi|254780806|r 200 QVVSDVRKNLGG 211 (265)
Q Consensus 200 ~~~~~l~~~~~~ 211 (265)
+..+++++.+..
T Consensus 134 ~~~~ei~~~l~~ 145 (189)
T cd00881 134 EVLREIKELLGL 145 (189)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999875
No 232
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.90 E-value=0.081 Score=30.09 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 49999808898888999999999999
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALA 32 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la 32 (265)
-+|...++-.||||||+|..||..|.
T Consensus 92 pliILigGtsGvGKSTlA~~LA~rLg 117 (306)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLG 117 (306)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 87999858998878999999999709
No 233
>PRK08233 hypothetical protein; Provisional
Probab=93.89 E-value=0.14 Score=28.71 Aligned_cols=37 Identities=43% Similarity=0.527 Sum_probs=26.9
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
|++.||+|+ +=-|+||||++-.|...+- +..++..|.
T Consensus 1 kkp~IIgIa-GgSgSGKTtla~~l~~~l~--~~~~~~~D~ 37 (182)
T PRK08233 1 KKTKIITIA-AVSGGGKTTLTERLTHKLK--NSKALYFDR 37 (182)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHCC--CCEEEEECC
T ss_conf 998899996-8886789999999999746--775899666
No 234
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.85 E-value=0.11 Score=29.22 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=31.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 998088988889999999999998799599998787
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
.+++|-=|+||||.|-.|+..+.+.|.+|.++..|.
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDL 37 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 789678999899999999999998299659965520
No 235
>PTZ00301 uridine kinase; Provisional
Probab=93.77 E-value=0.21 Score=27.63 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCC
Q ss_conf 874999980889888899999999999987-9-9599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAI-G-ENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~-g-~rVllID~D~ 45 (265)
.+-||+|+ +=-|+||||+|-+|+..|... | .+|.++-.|-
T Consensus 2 ~~~iIgIa-GgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~ 43 (210)
T PTZ00301 2 PCTVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF 43 (210)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 98899996-8876789999999999987614998079983676
No 236
>PRK09354 recA recombinase A; Provisional
Probab=93.77 E-value=0.21 Score=27.73 Aligned_cols=51 Identities=29% Similarity=0.438 Sum_probs=38.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC----CCCCCCHHHCCCCC
Q ss_conf 8749999808898888999999999999879959999878----77680112124633
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD----PQGNASTGLGIELY 58 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D----~q~~~~~~l~~~~~ 58 (265)
++|++-+. +.=++||||++.|.....++.|.-++.||+. |. -...+|++..
T Consensus 59 ~GRivEi~-G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~--~a~~lGVd~d 113 (350)
T PRK09354 59 KGRIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV--YAKKLGVDID 113 (350)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH--HHHHCCCCHH
T ss_conf 87089998-8987779999999999999759947999600027988--9998497715
No 237
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=93.75 E-value=0.11 Score=29.27 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 998088988889999999999998799599998787
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
.|+++-=++||||.|..|+..|.+.|++|.+|+-|.
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d~~ 37 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISDES 37 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 798579999688999999999997599389978001
No 238
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.60 E-value=0.13 Score=28.93 Aligned_cols=40 Identities=38% Similarity=0.547 Sum_probs=32.2
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCC
Q ss_conf 749999808898888999999999999-8799599998787768
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQGN 48 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~q~~ 48 (265)
+|-++|. ++=|+|||.++.-|...+. ..+..++++| |+|-
T Consensus 23 ~rH~aIl-g~TGsGKS~tv~vLl~~l~~~~~~~vlVfD--pHgE 63 (218)
T pfam01935 23 SRHFAIL-GSTGSGKSNTVAVLLEELLEKKGATVLIFD--PHGE 63 (218)
T ss_pred HHHEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEC--CCCC
T ss_conf 4214787-269997699999999999854799789982--8863
No 239
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.18 Score=28.03 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8749999808898888999999999999879959999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
..|+|+|. |=-||||+|..+++.|...|+++.+.
T Consensus 113 ~~~iIaVT---GTnGKTTTtsli~~iL~~~g~~~~~g 146 (457)
T PRK01390 113 DAPFIAIT---GTNGKSTTTALIAHLLRQAGRDVQMG 146 (457)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 89889992---89964989999999999739986996
No 240
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=93.56 E-value=0.069 Score=30.51 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=45.6
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC-HHH
Q ss_conf 027820331013332--22210112331001111123113788875335777655432026774310020231253-100
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN-SLS 198 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~-~~~ 198 (265)
..|.+-|||||+... ..+..++..+|.+++++..+.- ++ .+..+.+... ..++. ++. +++|++|.-. ...
T Consensus 66 ~~~~i~~IDtPGH~df~~~~~~g~~~~D~ailvVda~~G-~~--~QT~eh~~~~-~~~~~--~~i-v~iNK~D~v~~~~~ 138 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG-IQ--TQTAECLVIG-EILCK--KLI-VVLNKIDLIPEEER 138 (192)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CC--HHHHHHHHHH-HHCCC--CEE-EEEECCCCCCHHHH
T ss_conf 745899987798388998888887432652799987888-87--8999999999-98589--979-99974127881577
Q ss_pred HHHHHHHHHHH
Q ss_conf 11268999880
Q gi|254780806|r 199 QQVVSDVRKNL 209 (265)
Q Consensus 199 ~~~~~~l~~~~ 209 (265)
++..+++++.+
T Consensus 139 ~~~~~~i~~~l 149 (192)
T cd01889 139 ERKIEKMKKKL 149 (192)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 241
>PRK05973 replicative DNA helicase; Provisional
Probab=93.46 E-value=0.2 Score=27.85 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=31.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 998088988889999999999998799599998787
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
.+..++=|.|||+++.|+|...++.|+.|++.-+..
T Consensus 67 IIlAARPsMGKTafaLnla~~A~k~g~~v~fFSLEM 102 (237)
T PRK05973 67 VLLGARPGQGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999428988789999999999999599669996159
No 242
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=93.43 E-value=0.088 Score=29.90 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 768749999808898888999999999999879959999878
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+....+|.|+ +=-|+||||++.-||..| |. -.+|.|
T Consensus 5 ~~~~~iiVVM-GVsGsGKSTig~~LA~~l---~~--~fiegD 40 (177)
T PRK11545 5 NHDHHIYVLM-GVSGSGKSAVASAVAHQL---HA--AFLDGD 40 (177)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHH---CC--CEECCC
T ss_conf 7887599998-479899999999999981---99--855365
No 243
>PRK06321 replicative DNA helicase; Provisional
Probab=93.42 E-value=0.22 Score=27.51 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 874999980889888899999999999987-99599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~ 45 (265)
++..| |..++=|+|||+++.|+|...|.. ++.|++.-+..
T Consensus 225 ~Gdli-viaaRPsmGKTalalnia~~~a~~~~~~v~~fSLEM 265 (472)
T PRK06321 225 PSNLM-ILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 67579-985389997799999999999985699469975779
No 244
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=93.35 E-value=0.2 Score=27.77 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECC
Q ss_conf 999808898888999999999999-879959999878
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLD 44 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D 44 (265)
+....+--|+|||+++.++++.-+ +.|.+|+-|-++
T Consensus 21 ~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~e 57 (231)
T pfam06745 21 VVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLE 57 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999858972599999999999998658968999813
No 245
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=93.22 E-value=0.15 Score=28.57 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=31.4
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 76874999980889888899999999999987995999987
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.++-+||+|. |=.||||++--++..|...|+++.++-.
T Consensus 97 ~~~l~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~igT 134 (481)
T PRK00139 97 SDKLKLIGVT---GTNGKTTTAYLIAQILRLLGKKAALIGT 134 (481)
T ss_pred HHCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 4318089995---8998434999999999874986314302
No 246
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.21 E-value=0.27 Score=27.07 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=30.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH------CCCCEEEEECCC
Q ss_conf 499998088988889999999999998------799599998787
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAA------IGENVLLIDLDP 45 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~------~g~rVllID~D~ 45 (265)
..|+-..+--|+|||+++..+|...+. .+.+|+-||...
T Consensus 19 G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 879999999998499999999999842475367896299995367
No 247
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.20 E-value=0.18 Score=28.06 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=31.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87499998088988889999999999998799599998
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
+++-+++. .--|+||||+-.-++.++|..|+|+++|=
T Consensus 96 rg~SFaii-APTGvGKTTfg~~~sl~~a~kgkr~yii~ 132 (1187)
T COG1110 96 RGKSFAII-APTGVGKTTFGLLMSLYLAKKGKRVYIIV 132 (1187)
T ss_pred CCCCEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 37844898-27887654799999999875587499996
No 248
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=93.20 E-value=0.23 Score=27.46 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCCCEEEECCC--CCCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 78203310133--3222210112331001111123-11378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPS--FNLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~--~~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
|.+.|.|+++. +..+....+..||.++++...+ ..|+..+...++ .+.+....++++. +|-|+.|-... +
T Consensus 48 ~~~~i~Dt~G~e~~~~~~~~~~~~ad~~iivfd~~~~~S~~~i~~~~~---~i~~~~~~~~pii-lvgnK~Dl~~~--~- 120 (162)
T pfam00071 48 VKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLE---EILRHADDNVPIV-LVGNKCDLEDQ--R- 120 (162)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHH---HHHHHCCCCCEEE-EEEECCCHHHC--C-
T ss_conf 999999789872046788998625765504234898899999999999---9998579886288-99752474651--8-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--89999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELI 255 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~ 255 (265)
.|+..+.-.-|...+.|.++-+.++ ..-+.|..|+++++
T Consensus 121 ----------------~i~~~e~~~~a~~~~~~y~e~Sak~g~gI~~~F~~i~~~il 161 (162)
T pfam00071 121 ----------------VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161 (162)
T ss_pred ----------------CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf ----------------89999999999980997999737888299999999999967
No 249
>PRK07261 topology modulation protein; Provisional
Probab=93.18 E-value=0.17 Score=28.28 Aligned_cols=32 Identities=34% Similarity=0.337 Sum_probs=22.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4999980889888899999999999987995999987
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
||. |+ +-+|+||||+|-.||. ..|..+.-+|.
T Consensus 2 rI~-Ii-G~sGsGKSTlAr~L~~---~~~ip~~~LD~ 33 (171)
T PRK07261 2 KIA-II-GYSGSGKSTLARFLGQ---HYNCPVLHLDQ 33 (171)
T ss_pred EEE-EE-CCCCCCHHHHHHHHHH---HHCCCEEEECC
T ss_conf 899-98-8999868999999999---87979797022
No 250
>PRK06904 replicative DNA helicase; Validated
Probab=93.13 E-value=0.23 Score=27.43 Aligned_cols=40 Identities=33% Similarity=0.438 Sum_probs=31.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 874999980889888899999999999987-99599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~ 45 (265)
.+..|.+ .++=|+|||+++.|+|...|.. +++|+++-+..
T Consensus 220 ~g~LiVi-AaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM 260 (472)
T PRK06904 220 PSDLIIV-AARPSMGKTTFAMNLCENAAMASEKPVLVFSLEM 260 (472)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 5757999-7379875689999999999995599579977879
No 251
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.10 E-value=0.4 Score=26.08 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=59.5
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 7820331013332--2221011233100111112-311378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
+.+-|.||++.-. .+....+..||.++++... +..|+..+.. .++.++...+++..+ -+|-|+.|-.. .+
T Consensus 53 ~~l~iwDt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~---w~~~i~~~~~~~~~i-iLVGNK~DL~~--~r- 125 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS---WLEDARQHSNSNMTI-MLIGNKCDLES--RR- 125 (168)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHCEEEEECCCCCHHHHHHHHH---HHHHHHHHCCCCCEE-EEEEECCCHHH--CC-
T ss_conf 999999799973346255888664368999344587799999999---999999867999659-98434235454--07-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ 257 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~ 257 (265)
.|+..+.-.-|...|.+.++-+.+. ...+.|..+++++++|
T Consensus 126 ----------------~V~~~e~~~~a~~~~~~~~E~SAk~~~nV~~~F~~l~~~i~~k 168 (168)
T cd01866 126 ----------------EVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYEK 168 (168)
T ss_pred ----------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf ----------------7899999999998699999976788808899999999999739
No 252
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=93.05 E-value=0.23 Score=27.43 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=26.0
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 749999808898888999999999999879959999
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
.+.+.+ .=-|+|||.+++.++..+...++|++++
T Consensus 19 ~~~~i~--~pTGsGKT~~~~~~i~~~~~~~~~~lvl 52 (103)
T pfam04851 19 KRGLIV--MATGSGKTLTAAKLIARLLKGKKKVLFL 52 (103)
T ss_pred CCEEEE--ECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 986999--5899987999999999998469929999
No 253
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.98 E-value=0.24 Score=27.37 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8749999808898888999999999999879959999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
..|+|+|. |--||||+|..+++.|...|+++.+.
T Consensus 121 ~~~iIaVT---GTnGKTTTt~li~~iL~~~g~~~~~~ 154 (501)
T PRK02006 121 APKVLAIT---GTNGKTTTTSLTGLLCERAGKKVAVA 154 (501)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 87489993---89966879999999999769974652
No 254
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.96 E-value=0.24 Score=27.38 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99808898888999999999999879959999878
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
...++-=|+||||+...+|..+++.|++||-|-..
T Consensus 85 vLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGE 119 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 99825998868899999999998639938998245
No 255
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=92.94 E-value=0.28 Score=26.94 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+|.+. +-=|+||||++.-|+ .+|. .+||+|-
T Consensus 3 ~IGLT-GGIgsGKStv~~~l~----~~G~--~viDaD~ 33 (394)
T PRK03333 3 RIGLT-GGIGAGKSTVSATLA----QLGA--VVVDGDV 33 (394)
T ss_pred EEEEE-CCCCCCHHHHHHHHH----HCCC--EEEEHHH
T ss_conf 99830-675557999999999----8799--4998579
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.93 E-value=0.2 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 889888899999999999987995999987
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+.=|+|||-++.-+|..|.++|+.|+-+-+
T Consensus 190 G~~G~GKTfLa~~IA~ell~~g~sViy~ta 219 (330)
T PRK06835 190 GNTGTGKTFLSNCIAKELLDRGKTVIYRTS 219 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 999998899999999999987994999629
No 257
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.90 E-value=0.21 Score=27.73 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=29.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
-++++|+|. |--||||+|..+++.|...|+++.+.
T Consensus 107 ~~~~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~g 141 (448)
T PRK03803 107 AKAPIVAIT---GSNAKSTVTTLVGEMAKAAGKRVAVG 141 (448)
T ss_pred CCCCEEEEC---CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 789889985---89983889999999998659837994
No 258
>PRK08118 topology modulation protein; Reviewed
Probab=92.85 E-value=0.18 Score=28.13 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 499998088988889999999999998799599998
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
|-|.|+ +-.|+||||+|-.||. ..|..+.-+|
T Consensus 2 ~rI~Ii-G~~GsGKSTlAr~L~~---~~~ip~~~LD 33 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGE---KLNIPVHHLD 33 (167)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHH---HHCCCEEECC
T ss_conf 679998-8999879999999999---8896979644
No 259
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.84 E-value=0.27 Score=27.03 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=29.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87499998088988889999999999998799599998
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
..|+|+|. |--||||+|..+++.|...|.++.+.-
T Consensus 116 ~~~~IaVT---GTnGKTTttsli~~iL~~~g~~~~~~G 150 (487)
T PRK03369 116 PRRWLVVT---GTNGKTTTTSMLHAMLRAAGRRSVLCG 150 (487)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 66559997---988727899999999985899859981
No 260
>KOG1805 consensus
Probab=92.80 E-value=0.12 Score=29.16 Aligned_cols=34 Identities=38% Similarity=0.438 Sum_probs=29.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9980889888899999999999987995999987
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+.+-+=-|+||||+-+.|-..|...|++||+.-.
T Consensus 688 ~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsy 721 (1100)
T KOG1805 688 ALILGMPGTGKTTTISLLIKILVALGKKVLLTSY 721 (1100)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 2032699898122599999999973881899850
No 261
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=92.76 E-value=0.16 Score=28.42 Aligned_cols=30 Identities=40% Similarity=0.488 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9888899999999999987995999987877
Q gi|254780806|r 16 GGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 16 GGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
-|+||||.+-.|+-.|...|++|... .-|.
T Consensus 5 DGsGKsTq~~~L~~~L~~~g~~v~~~-~ep~ 34 (186)
T pfam02223 5 DGAGKTTQAELLKERLKEQGIKVVLT-REPG 34 (186)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE-ECCC
T ss_conf 99899999999999999879908997-4999
No 262
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.72 E-value=0.2 Score=27.84 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=31.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 749999808898888999999999999879959999878
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
.+-+ +..+-=|+||||++-.+|..+...+..++.+++.
T Consensus 19 ~~~i-ll~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~ 56 (151)
T cd00009 19 PKNL-LLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 9808-9989999886599999999712137982785477
No 263
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.72 E-value=0.24 Score=27.37 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
.++|+|+|. |==||||+|..+++.|...|+++.+.
T Consensus 115 ~~~~~IaVT---GTnGKTTTtsmi~~iL~~~g~~~~~g 149 (458)
T PRK01710 115 CPAKVFGIT---GSDGKTTTTTLIYEMLKEEGYKTWVG 149 (458)
T ss_pred CCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 758779993---68984789999999999849975851
No 264
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=92.69 E-value=0.28 Score=26.99 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=33.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7499998088988889999999999998799599998
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
.+.+-+++.-.|+|||+++.+|+..|.++|.+|...=
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 6149984268886288999999999997073269984
No 265
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.68 E-value=0.27 Score=27.06 Aligned_cols=37 Identities=46% Similarity=0.413 Sum_probs=29.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCC
Q ss_conf 999980889888899999999999987--99599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAI--GENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~--g~rVllID~D~ 45 (265)
+|.|+ +--|+||||+|-.|...|.+. +.+|.+|-.|.
T Consensus 1 IIGIa-G~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~ 39 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 98978-8998779999999999860026999489997878
No 266
>COG4240 Predicted kinase [General function prediction only]
Probab=92.68 E-value=0.23 Score=27.48 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=31.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECC
Q ss_conf 9999808898888999999999999879-959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIG-ENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g-~rVllID~D 44 (265)
-|..+|+--|+||||+++-|-..|+..| +||+-.-+|
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 39985268887653599999999997365306886645
No 267
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.65 E-value=0.24 Score=27.30 Aligned_cols=38 Identities=50% Similarity=0.592 Sum_probs=28.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87499998088988889999999999998799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+..+|.++ +=.|+||||++-.|...|.. .++.+|-.|-
T Consensus 7 ~~iiIgIa-G~SgSGKTTv~~~l~~~~~~--~~~~~I~~D~ 44 (218)
T COG0572 7 KVIIIGIA-GGSGSGKTTVAKELSEQLGV--EKVVVISLDD 44 (218)
T ss_pred CEEEEEEE-CCCCCCHHHHHHHHHHHHCC--CCCEEEECCC
T ss_conf 66999986-79877889999999998286--7524765223
No 268
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.64 E-value=0.26 Score=27.18 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=27.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 768749999808898888999999999999879959999
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+.+.++|+|. |=-||||+|..+++.|...|+++.+.
T Consensus 102 ~~~~~iIaVT---GTnGKTTTt~li~~iL~~~g~~~~~g 137 (438)
T PRK03806 102 EAQAPIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 137 (438)
T ss_pred CCCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 2799889994---89984899999999998659975677
No 269
>KOG4658 consensus
Probab=92.57 E-value=0.13 Score=28.87 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 49999808898888999999999999
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALA 32 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la 32 (265)
.++++. +-||+||||++..+=-...
T Consensus 180 ~ivgi~-GMGGvGKTTL~~qi~N~~~ 204 (889)
T KOG4658 180 GIVGIY-GMGGVGKTTLARQIFNKFD 204 (889)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHCCH
T ss_conf 689998-8970349999999841331
No 270
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=92.52 E-value=0.77 Score=24.39 Aligned_cols=168 Identities=16% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCC
Q ss_conf 87499998088988889999999999998799599998787768011212463334541167630257712102444444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIP 84 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~ 84 (265)
..|-|...+.-.-+|||.++..|+..|.. ||.+.-.-|. .++..++++= . ++++. .+.
T Consensus 243 ~kkgiiLl~TgS~SGKTFl~T~i~~kL~~---kvfv~KiGpD----------vRDIVPsLYl--l-rE~M~------ky~ 300 (482)
T PRK06278 243 VKKGIILLATGSESGKTFLSTSIVSKLRG---KTFVSKIGPD----------VRDIVPSLYL--L-REPME------KYS 300 (482)
T ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHHCC---CEEEEECCCC----------HHHCCHHHHH--C-CCHHH------HCC
T ss_conf 99659998437877743116778887506---4899860886----------6652524631--0-42122------046
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEC--CCCCCCC----CCHHHHH---H-HCCCCCC
Q ss_conf 200014887457750001232222102333224765102782033101--3332222----1011233---1-0011111
Q gi|254780806|r 85 NLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCP--PSFNLLT----MNAMAAA---D-SILVPLQ 154 (265)
Q Consensus 85 ~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~p--p~~~~~~----~~al~aa---d-~viip~~ 154 (265)
.+.+ ++. ...-+.+++...-..+|||+||.-- ...+.+. .++-..| . -+++|+.
T Consensus 301 SIkI--~~r--------------GW~~~~efle~vk~sdYd~~iiEGVMgafTg~Ln~k~~YS~aeIak~lg~PvyivS~ 364 (482)
T PRK06278 301 SIKI--SDR--------------GWMEPSEFLEFVKNSDYDNYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSS 364 (482)
T ss_pred CEEE--CCC--------------CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEC
T ss_conf 1685--467--------------876899999997347987899850478888875057887689999855998899942
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 231137888753-3577765543202677431002023125310011268999880852015
Q gi|254780806|r 155 CEFFALEGLSQL-LETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYN 215 (265)
Q Consensus 155 p~~~s~~~~~~~-~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~ 215 (265)
.+...++++.-- +.....+ + .....+.|+++|++=. ... -+-...+.+.++..+++
T Consensus 365 cnksGIEgAfve~~ay~slL-k--~~Gv~v~giILNKvYn-~~i-fekvk~~~~~~~i~~~~ 421 (482)
T PRK06278 365 CSKGGIEGAFVELMAYYSLL-K--EMGVNVAGIILNKVYN-MEI-FEKVKKIASNLNINVIG 421 (482)
T ss_pred CCCCCCHHHHHHHHHHHHHH-H--HCCCCEEEEEEEEECC-HHH-HHHHHHHHHHCCCEEEE
T ss_conf 55566047899999999999-8--6697358899741125-889-99999999865952986
No 271
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=92.50 E-value=0.081 Score=30.11 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCCCCHH
Q ss_conf 8898888999999999999879959999878---77680112
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLIDLD---PQGNASTG 52 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID~D---~q~~~~~~ 52 (265)
+=-|+||||++..|+..|.+-=-..--||.| |++|...|
T Consensus 5 GvaG~GKs~~a~~l~~~lg~iyPd~~yieGDdLHP~~Ni~KM 46 (175)
T TIGR01313 5 GVAGSGKSTIASALAHRLGDIYPDAKYIEGDDLHPAANIEKM 46 (175)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 027862889999999985431578875688666787779873
No 272
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=92.49 E-value=0.41 Score=25.98 Aligned_cols=43 Identities=30% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCC
Q ss_conf 76874999980889888899999999999987995--99998787
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGEN--VLLIDLDP 45 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~r--VllID~D~ 45 (265)
+.+++.|.-..+-=||||||++-.|+..+++.+.. |-+|=+|.
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 888887999605766557789999999996388987337871454
No 273
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=92.46 E-value=0.063 Score=30.74 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCCCEEEECCCCCCCCCCH-----------HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 7820331013332222101-----------12331001111123113788875335777655432026774310020231
Q gi|254780806|r 124 FSYIFLDCPPSFNLLTMNA-----------MAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFD 192 (265)
Q Consensus 124 yD~IiiD~pp~~~~~~~~a-----------l~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~ 192 (265)
.|+=|||+|+-+|--+.+. -+.+|.+|.|+..+... |++.-.++.++ .+. +.+ +++|++|
T Consensus 41 ~~i~ivDLPG~YSL~~~S~~dE~v~~dyl~~e~~DLv~nVVDA~nLE-RnL~LTLQL~E-----~G~--p~i-~~LN~~D 111 (733)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSGLDEKVARDYLLNEKPDLVVNVVDASNLE-RNLYLTLQLLE-----LGI--PMI-LALNLVD 111 (733)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHH-HHHHHHHHHHH-----HCC--HHH-HHHHHHH
T ss_conf 27899844873005899874279998997538996799972566777-89999999997-----162--585-6872678
Q ss_pred CCCHHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 253100-1126899988085201562
Q gi|254780806|r 193 SRNSLS-QQVVSDVRKNLGGKVYNTV 217 (265)
Q Consensus 193 ~~~~~~-~~~~~~l~~~~~~~v~~~~ 217 (265)
...+.. +--.+.|.+.+|.+|.++.
T Consensus 112 eA~k~GI~Id~~~Lee~LGvPVv~~~ 137 (733)
T TIGR00437 112 EAEKKGIRIDEEKLEERLGVPVVPTS 137 (733)
T ss_pred HHHHCCCEECHHHHHHHCCCCEEEEE
T ss_conf 99772963125777543386525653
No 274
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.41 E-value=0.47 Score=25.67 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 87499998088988889999999999998799599998
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
+++-|+|- +=-|+||||.+--|+-.|...|++|.+..
T Consensus 2 kG~fIviE-GiDGsGKsTq~~~L~~~L~~~g~~v~~t~ 38 (204)
T PRK00698 2 RGMFITIE-GIDGAGKSTQIELLAERLEEQGRDVVFTR 38 (204)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 83199998-89999899999999999996799789986
No 275
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.27 E-value=0.19 Score=27.92 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=29.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
.+.++|+|. |--||||+|..++..|...|+++.+.
T Consensus 100 ~~~~~IaIT---GTNGKTTTt~ll~~iL~~~g~~~~~~ 134 (418)
T PRK00683 100 QRYPSLGIT---GSTGKTTTILFLEHLLRTLGIPAFAM 134 (418)
T ss_pred CCCCEEEEE---CCCCCEEHHHHHHHHHHHCCCCCEEE
T ss_conf 479879997---68986609999999998679981888
No 276
>PRK13764 ATPase; Provisional
Probab=92.27 E-value=0.19 Score=27.92 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.+++=| ++++.-|+||||++.+||-+++.+|+=|=-+..
T Consensus 257 ~~a~Gi-lIaG~PGaGKsTfaqalA~~~~~~g~iVKTmEs 295 (605)
T PRK13764 257 ERAEGI-LIAGAPGAGKSTFAQALAEFYADMGKIVKTMES 295 (605)
T ss_pred HCCCEE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 336649-997799997789999999999847978983248
No 277
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.18 E-value=0.29 Score=26.85 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
...++|+|. |--||||+|..+++.|...|.++.+.
T Consensus 106 ~~~~iIaVT---GTnGKTTTtsli~~iL~~~g~~~~~g 140 (438)
T PRK04663 106 VDKPVIAIT---GSNGKSTVTDLTGVMAKAAGVKVAVG 140 (438)
T ss_pred CCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 589789994---89982899999999998289970687
No 278
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=92.17 E-value=0.54 Score=25.29 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=54.9
Q ss_pred EEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf 331013332--2221011233100111112-3113788875335777655432026774310020231253100112689
Q gi|254780806|r 128 FLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSD 204 (265)
Q Consensus 128 iiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~ 204 (265)
|.||++.-. .+....+..||.+|++... +..|+..+....+.+..++.....++++ -+|-|+.|-.. .++
T Consensus 51 iwDtaG~e~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~pi-iLVGNK~Dl~~--~r~---- 123 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPI-MIVGNKCDKVY--ERE---- 123 (190)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCCCCCHHH--CCC----
T ss_conf 99899973116788998236765899972797789999999999999985337999528-95145535033--057----
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 9988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 205 VRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 205 l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
|+..+.-.-|...|.+.++-+-+. ..-+.|..|+++|.++.
T Consensus 124 -------------V~~~e~~~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~~~ 166 (190)
T cd04144 124 -------------VSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred -------------CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -------------8999999999980998999735888097999999999999877
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.11 E-value=0.36 Score=26.35 Aligned_cols=39 Identities=31% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+.+.-|.+ ++.=||||||++.-+|-.|...|++|.=+=+
T Consensus 3 ~~~mki~I-TG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 3 KMAMKIFI-TGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 75459998-6799845899999999999855966513983
No 280
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=92.05 E-value=0.11 Score=29.22 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.+.+.++|||+.-. .+...++..+|.+++++..+..-..... +.++.++. .+. ++ -+++|++|.......+
T Consensus 49 ~~~i~~iDTPGh~~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~---~~~~~l~~-~~~--p~-ivviNKiD~~~~~~~~ 121 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI---EAIKLAKA-ANV--PF-IVALNKIDKPNANPER 121 (168)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHHH-CCC--CE-EEEEECCCCCCCCHHH
T ss_conf 87189998998167799999998626889999864667545899---99999987-699--78-9999893089879899
Q ss_pred HHHHHHH
Q ss_conf 2689998
Q gi|254780806|r 201 VVSDVRK 207 (265)
Q Consensus 201 ~~~~l~~ 207 (265)
+..++.+
T Consensus 122 v~~~l~~ 128 (168)
T cd01887 122 VKNELSE 128 (168)
T ss_pred HHHHHHH
T ss_conf 9999999
No 281
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=92.04 E-value=0.2 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 499998088988889999999999998
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
++|.+ .+.-|+||||+.-.+|...++
T Consensus 1 r~i~i-~G~aG~GKTtll~kl~~~wa~ 26 (165)
T pfam05729 1 RTVIL-QGEAGSGKTTLLQKLALLWAQ 26 (165)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHC
T ss_conf 98999-827989899999999999986
No 282
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=91.95 E-value=0.91 Score=23.98 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=58.3
Q ss_pred EEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf 33101333--22221011233100111112-3113788875335777655432026774310020231253100112689
Q gi|254780806|r 128 FLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSD 204 (265)
Q Consensus 128 iiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~ 204 (265)
|.||++.- ..++..-...|+.+|++..- +..|+..+.. .+++++...++...+.-+|-|+.|-.. .|
T Consensus 56 IwDTaGqe~~~si~~~yyr~a~g~ilVyDvt~~~SF~~l~~---W~~ei~~~~~~~~~~iiLVGNK~DL~~--~R----- 125 (211)
T cd04111 56 LWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD---WLEEARSHIQPHRPVFILVGHKCDLES--QR----- 125 (211)
T ss_pred EEECCCCCCCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHH---HHHHHHHHCCCCCCEEEEEEECCCHHH--HC-----
T ss_conf 99798863456442877421244689714777799999999---999999974988853898874231285--67-----
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988085201562678688987773798579997999--89999999999999999867
Q gi|254780806|r 205 VRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQERHR 261 (265)
Q Consensus 205 l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~~~~ 261 (265)
.|...+.-.-|...|.+.++-+-++ ..-+.|..||++|+++.+.+
T Consensus 126 ------------~Vs~ee~~~~A~~~~~~f~EtSAK~g~nV~e~F~~la~~i~~~~~~~ 172 (211)
T cd04111 126 ------------QVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred ------------CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf ------------88999999999983997999759998198999999999999998738
No 283
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=91.87 E-value=0.068 Score=30.56 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCCCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf 2782033101333--2222101123310011111231137888753357776554320267743100202312
Q gi|254780806|r 123 DFSYIFLDCPPSF--NLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 123 ~yD~IiiD~pp~~--~~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
.|-+=+||||+.. +..+..++.++|.+++++....--..+++..++ . ....++++. +++|++|.
T Consensus 72 ~~~inlIDTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~---~---a~~~~l~~i-l~iNKiDR 137 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR---Q---ALKERVKPV-LVINKIDR 137 (222)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH---H---HHHCCCCEE-EEEECCCC
T ss_conf 638999728856989999999998568179961045785778999999---9---998599979-99989036
No 284
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.79 E-value=0.35 Score=26.39 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=33.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
||+|. +--|+||||+.-.+...+.+.|-+..+|.+|-
T Consensus 1 IIaVt-GsSGAGtsTv~r~f~~IF~re~v~a~vIegD~ 37 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDS 37 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98993-38888478799999998720588528996786
No 285
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.66 E-value=0.2 Score=27.75 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 74999980889888899999999999
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTAL 31 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~l 31 (265)
+++| +..+--||||||++..||..|
T Consensus 3 ~~ii-ligG~sGvGKStla~~lA~rl 27 (197)
T PRK12339 3 STIH-FIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CEEE-EEECCCCCCHHHHHHHHHHHC
T ss_conf 4799-985799887899999999974
No 286
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.59 E-value=0.48 Score=25.61 Aligned_cols=34 Identities=35% Similarity=0.339 Sum_probs=29.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99980889888899999999999987995999987
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
|+|- +=-|+||||.+-.|+-.|...|++|.+..-
T Consensus 3 IviE-G~dGsGKsT~~~~L~~~L~~~g~~v~~~~e 36 (200)
T cd01672 3 IVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998-998999999999999999977993899869
No 287
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.58 E-value=0.43 Score=25.88 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+.+++|+|. |=-||||+|..+++.|...|+++.++
T Consensus 120 ~~~~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~~ 154 (481)
T PRK01438 120 TPAPWLAVT---GTNGKTTTVQMLASILRAAGLRAAAV 154 (481)
T ss_pred CCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 888789993---89974609999999999669970799
No 288
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.54 E-value=0.42 Score=25.93 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+..|+|+|. |=-||||+|..+++.|...|+++.+.
T Consensus 102 ~~~~~IaIT---GTnGKTTTt~li~~iL~~~g~~~~~~ 136 (450)
T PRK01368 102 KNLKFIAIT---GTNGKSTTTALISHILNSNGLDYPVA 136 (450)
T ss_pred CCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 799779996---89997489999999999759962896
No 289
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.50 E-value=0.23 Score=27.51 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=31.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9998088988889999999999998799599998787
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+.+.++=-|+||||.+-+||..|.+.+.+|..+-.|-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 6998269998801789999999997200112132014
No 290
>PRK06217 hypothetical protein; Validated
Probab=91.48 E-value=0.27 Score=27.01 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=21.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999808898888999999999999879959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
.|-|+ +-+|+||||++..||..+ |.. .+|+|
T Consensus 3 rI~i~-G~sGsGkSTla~~La~~l---~~~--~~~lD 33 (185)
T PRK06217 3 RIHIT-GASGSGTTTLGAALAEAL---DLP--HLDTD 33 (185)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH---CCC--EEECC
T ss_conf 79997-899887899999999975---989--68645
No 291
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=91.47 E-value=0.44 Score=25.83 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9808898888999999999999879959999878
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
++.++-|+|||.++-.|+...-.+|-+|.+||..
T Consensus 478 ~I~g~SGsGKSf~~q~l~~~~~~~G~~V~IID~G 511 (864)
T PRK13721 478 AVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMG 511 (864)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9982899868999999999998579979999699
No 292
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=91.46 E-value=0.12 Score=29.19 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHH-H---HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 027820331013332--2221011233100111112311378-8---87533577765543202677431002023125
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALE-G---LSQLLETVEEVRRTVNSALDIQGIILTMFDSR 194 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~-~---~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~ 194 (265)
+.+.|.|||+|+.-. ..+..++..+|..|+++....-.++ + -.+..+++... ..++. +.+=+.+|++|.-
T Consensus 75 ~~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~-~~lGi--k~iIVavNKMD~v 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV--KQLIVAVNKMDDV 150 (219)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCC--CEEEEEEECCCCC
T ss_conf 9936999878972667889998775316689999857675103667776599999999-98499--7489999875368
No 293
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.43 E-value=0.36 Score=26.32 Aligned_cols=35 Identities=40% Similarity=0.479 Sum_probs=26.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
.++++|+|. |=-||||+|..+++.|...|+++.+.
T Consensus 110 ~~~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~~ 144 (450)
T PRK02472 110 SEAPIIGIT---GSNGKTTTTTLIAEMLNAGGQHGLLA 144 (450)
T ss_pred CCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 159789982---79997319999999999749973999
No 294
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=91.40 E-value=0.22 Score=27.56 Aligned_cols=28 Identities=36% Similarity=0.345 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 88988889999999999998-79959999
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAA-IGENVLLI 41 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~-~g~rVllI 41 (265)
+==|+||||.+--|+..|.. .|++|+..
T Consensus 9 GiDGaGKTT~~~~l~~~l~~l~g~~~~~t 37 (211)
T TIGR00041 9 GIDGAGKTTQLNLLKKLLKELEGYKVLFT 37 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 11587589999999999775138347887
No 295
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=91.39 E-value=0.18 Score=28.08 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=38.8
Q ss_pred CCCCCCEEEECCCCCC--CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf 0278203310133322--22101123310011111231137888753357776554320267743100202312
Q gi|254780806|r 122 SDFSYIFLDCPPSFNL--LTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~~--~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
+.+.|+|||+|+...- .+..+...+|.+++++....--.. +..+++..++ .++. +.+=+++|++|.
T Consensus 75 ~~~~~~iiDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~---QT~eh~~~~~-~lgi--~~iIv~vNKmD~ 142 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE---QTRRHSYILS-LLGI--RHVVVAVNKMDL 142 (208)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCH---HHHHHHHHHH-HCCC--CEEEEEEECCCC
T ss_conf 992699987896288999999998637747999975888727---8999999999-7499--839999988576
No 296
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=91.34 E-value=0.11 Score=29.22 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=9.9
Q ss_pred EEEEECCCCCCCHHHHHHHHH
Q ss_conf 999980889888899999999
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLS 28 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA 28 (265)
+|+.. +-=-|||||+=-.|.
T Consensus 5 ~IALv-GNPN~GKSTLFN~LT 24 (772)
T PRK09554 5 TIGLI-GNPNSGKTTLFNQLT 24 (772)
T ss_pred EEEEE-CCCCCCHHHHHHHHH
T ss_conf 69988-899878999999986
No 297
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=91.29 E-value=0.29 Score=26.83 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 987687499998088988889999999999998799-59999878
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGE-NVLLIDLD 44 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~-rVllID~D 44 (265)
|..|+ ..|+|+ |==||||+|+.||..+...|. .+.+|-.-
T Consensus 104 ~~~~k-~~iaVa---GtHGKTTTTamia~~~~~aGLdPt~~~GG~ 144 (491)
T TIGR01082 104 MRKRK-ESIAVA---GTHGKTTTTAMIAVILKEAGLDPTVIVGGE 144 (491)
T ss_pred HHHHC-CEEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 86208-707998---368725689999999984499976898664
No 298
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=91.27 E-value=0.095 Score=29.70 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf 7820331013332--222101123310011111231137888753357776554320267743100202312
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
|-+-+||||+..+ ..+..++.++|.+++++....--...+++. ++.. ...++++. +++|++|.
T Consensus 71 ~~inlIDTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~---l~~a---~~~~l~~i-lviNKiDR 135 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERL---IRHA---ILEGLPIV-LVINKIDR 135 (213)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH---HHHH---HHCCCCEE-EEEECCCC
T ss_conf 578778898724179999988863776799998788875779999---9999---98699989-99988234
No 299
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=91.15 E-value=0.18 Score=28.10 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=35.6
Q ss_pred CCCCEEEEEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCC
Q ss_conf 76874999980---889888899999999999987995999987877680112124
Q gi|254780806|r 3 EKKSRIITIAN---QKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGI 55 (265)
Q Consensus 3 ~~~~kvI~v~s---~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~ 55 (265)
++.+|-|.|.. .--|-||||+|+.|+-+|.+.||++.+-== |.|+.-.||+
T Consensus 49 k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~alR--ePSlGP~fGi 102 (554)
T COG2759 49 KPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAIIALR--EPSLGPVFGI 102 (554)
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHHHCCCHHEEEEC--CCCCCCCCCC
T ss_conf 88860899982578888888612542489999861860058860--5776873144
No 300
>PRK07933 thymidylate kinase; Validated
Probab=91.04 E-value=0.32 Score=26.61 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=28.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99980889888899999999999987995999987
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
|+| -+==|+||||-+-.|+-.|...|++|.+...
T Consensus 3 I~f-EGiDGsGKSTq~~~L~~~L~~~g~~v~~~re 36 (213)
T PRK07933 3 IAI-EGVDGAGKRTLTEALRAALEAAGRSVATLAF 36 (213)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999-8899998999999999999977990799846
No 301
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=91.04 E-value=0.24 Score=27.31 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=31.1
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 76874999980889888899999999999987995999987
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
++++-|...+ =-|=||||.|..+|.-.+-+|+||++|-+
T Consensus 20 ~~kGli~Vyt--G~GKGKTTAAlGlalRA~G~G~rV~ivQF 58 (190)
T PRK05986 20 EEKGLLIVHT--GNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (190)
T ss_pred CCCCEEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 4686799980--69987188999999998369988999999
No 302
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=91.03 E-value=0.27 Score=27.07 Aligned_cols=88 Identities=20% Similarity=0.376 Sum_probs=53.0
Q ss_pred CCCCE-EEEEECCCCCCCHHHHHHHHHHHHHH----------------CCCC-----------------------EEEEE
Q ss_conf 76874-99998088988889999999999998----------------7995-----------------------99998
Q gi|254780806|r 3 EKKSR-IITIANQKGGVGKTTTAINLSTALAA----------------IGEN-----------------------VLLID 42 (265)
Q Consensus 3 ~~~~k-vI~v~s~KGGvGKTT~a~nlA~~la~----------------~g~r-----------------------VllID 42 (265)
.-+++ |+||. +==|||||+++-.+|.+|-+ +|+| |.|||
T Consensus 446 ~~~GpqIlClv-GPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlD 524 (941)
T TIGR00763 446 KMKGPQILCLV-GPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLD 524 (941)
T ss_pred CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHCCEEEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88887678720-72695422278999999688049995267220311278643203467257899987604158806862
Q ss_pred -C-------CCCCCCCHHHC--CCCCCCCCCEEEEEE-CCCCHHHCC--CCCCCCCEEECCCC
Q ss_conf -7-------87768011212--463334541167630-257712102--44444420001488
Q gi|254780806|r 43 -L-------DPQGNASTGLG--IELYDRKYSSYDLLI-EEKNINQIL--IQTAIPNLSIIPST 92 (265)
Q Consensus 43 -~-------D~q~~~~~~l~--~~~~~~~~ti~~~l~-~~~~l~~~i--~~~~~~~l~iipa~ 92 (265)
- |-||+.+..|. +||.. ...+.|... -+.||++++ +=...-.+|=||..
T Consensus 525 EIDK~~~~~~~~GDPaSALLEvLDPEQ-N~~F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~P 586 (941)
T TIGR00763 525 EIDKIGLKSSFRGDPASALLEVLDPEQ-NNAFSDHYLDVPFDLSKVLCYFIATANSIDTIPRP 586 (941)
T ss_pred EEEEECCCCCCCCCHHHHHHHHCCHHH-CCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCC
T ss_conf 022001678865563788864128643-60425530023400420021000244757677722
No 303
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.01 E-value=0.25 Score=27.20 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=27.5
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.+++++++. +.-|+||||+--.|+..+.-.+=.|. +|.
T Consensus 26 ~~G~i~~ii-GpNG~GKSTLLk~l~~~l~p~~G~V~-l~g 63 (258)
T COG1120 26 PKGEITGIL-GPNGSGKSTLLKCLAGLLKPKSGEVL-LDG 63 (258)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCCEEE-ECC
T ss_conf 599799998-99888999999998656788887799-999
No 304
>PRK13973 thymidylate kinase; Provisional
Probab=91.00 E-value=0.74 Score=24.51 Aligned_cols=39 Identities=36% Similarity=0.482 Sum_probs=32.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87499998088988889999999999998799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+++-|+|= +=-|+||||.+-.|+-.|...|.+|.+.-- |
T Consensus 2 kG~fIv~E-GiDGsGKsTq~~~L~~~L~~~g~~v~~tre-P 40 (216)
T PRK13973 2 RGRFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTRE-P 40 (216)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-C
T ss_conf 82499988-999998999999999999977995799409-8
No 305
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=90.95 E-value=1.1 Score=23.40 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=55.4
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 82033101333--222210112331001111123-113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.- ..+....+..++.+|++...+ ..|+..+.. .++.++...+++..+ -+|-|+.|-.. .+
T Consensus 52 ~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~l~~---w~~~~~~~~~~~~~i-ilVGNK~DL~~--~r-- 123 (166)
T cd04122 52 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS---WLTDARNLTNPNTVI-FLIGNKADLEA--QR-- 123 (166)
T ss_pred EEEEEECCCCCCCCCCCHHHEECCCEEEEEECCCCHHHHHHHHH---HHHHHHHHCCCCCEE-EECCCCCCHHH--CC--
T ss_conf 99999899985444252111431546599725874767999999---999999856999758-70340157444--38--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--899999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQ 256 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~ 256 (265)
.|+..+.-.-|...|.+.++-+.+. ...+.|..||++|.+
T Consensus 124 ---------------~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~~ 165 (166)
T cd04122 124 ---------------DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ---------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf ---------------999999999999869989998658780889999999999974
No 306
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.94 E-value=0.34 Score=26.48 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|..-++|++.|..+-+|.|+. +|..|++.|.+|.+.|.|..
T Consensus 1 M~~~~gKvavITGaasGIG~a-----~A~~la~~Ga~Vvi~d~~~~ 41 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLA-----TGTEFARRGARVVLGDVDKP 41 (275)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 959899879992826699999-----99999987998999979889
No 307
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.93 E-value=0.47 Score=25.66 Aligned_cols=33 Identities=39% Similarity=0.524 Sum_probs=26.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 874999980889888899999999999987995999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
.+++|+|. |=-||||+|..+++.|...|.++.+
T Consensus 109 ~~p~vaIT---GTNGKTTTTsli~~~l~~~G~~~~l 141 (448)
T COG0771 109 EAPIVAIT---GTNGKTTTTSLIAHLLKAAGLDALL 141 (448)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99989997---9996288999999999855998321
No 308
>PRK06194 hypothetical protein; Provisional
Probab=90.92 E-value=0.35 Score=26.38 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|.+-+.||+.|..+-+|.|+. +|..|++.|.+|.++|.+..
T Consensus 1 M~~l~gKvavITGassGIG~a-----~A~~la~~Ga~Vvl~d~~~~ 41 (301)
T PRK06194 1 MKDFAGKVAVITGAASGFGRE-----FARIGARLGMKLVLADVQQD 41 (301)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 989899989992737799999-----99999987998999979889
No 309
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=90.88 E-value=0.2 Score=27.87 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=23.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 9998088988889999999999998-799599998
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAA-IGENVLLID 42 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID 42 (265)
.||+.+==|+||||+.=|| |.. .|||..+|=
T Consensus 6 vTvvTGFLGaGKTTLiRhl---L~NA~GkRiAvIV 37 (349)
T TIGR02475 6 VTVVTGFLGAGKTTLIRHL---LENAEGKRIAVIV 37 (349)
T ss_pred EEEEECCCCCCHHHHHHHH---HHCCCCCEEEEEE
T ss_conf 2787375676158999999---7174787699998
No 310
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.84 E-value=0.26 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8749999808898888999999999999879959999878
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
++|-|.|+ +=-|+||||++--||..| | .-.||.|
T Consensus 2 ~~~a~VVm-GVsGsGKSTvg~~LA~~L---~--~~fiegD 35 (176)
T PRK09825 2 AGESYILM-GVSGSGKSLIGSKIAALF---S--AKFIDGD 35 (176)
T ss_pred CCCEEEEE-ECCCCCHHHHHHHHHHHH---C--CCEECCC
T ss_conf 98579998-289899899999999995---9--8776234
No 311
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.82 E-value=0.44 Score=25.80 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=28.5
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68749999808898888999999999999879959999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+..++|+|. |=-||||+|..+++.|...|+++.+.
T Consensus 107 ~~~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~~ 141 (459)
T PRK02705 107 KHIPWVGIT---GTNGKTTVTHLLAHILQAAGLNAPMC 141 (459)
T ss_pred CCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 049757771---78972789999999999839985364
No 312
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=90.80 E-value=0.16 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=18.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99998088988889999999999998799599998
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
+|++. ++==|||||+--.| .|.++.+-+
T Consensus 2 ~Vaiv-G~pNvGKStL~N~L------~g~~~~v~~ 29 (168)
T cd01897 2 TLVIA-GYPNVGKSSLVNKL------TRAKPEVAP 29 (168)
T ss_pred EEEEE-CCCCCCHHHHHHHH------HCCCCEECC
T ss_conf 79998-89998899999999------589860237
No 313
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.74 E-value=0.59 Score=25.05 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8749999808898888999999999999879959999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
..++|+|. |=-||||+|..+++.|...|+++.++
T Consensus 122 ~~~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~~ 155 (476)
T PRK00141 122 PRTWLAVT---GTNGKTTTTAMLAAMMQAGGFAAVAV 155 (476)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 77638896---89967989999999998379972899
No 314
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=90.73 E-value=0.21 Score=27.70 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=20.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998088988889999999999998
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
|.++|+-=|+||||+|-.||-.|..
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl 26 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 7887358968647899999986398
No 315
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.72 E-value=0.42 Score=25.93 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=25.5
Q ss_pred EEEEEECCCCCCCHHHHHHH-HHHHHHH-----CCCCEEEEE
Q ss_conf 49999808898888999999-9999998-----799599998
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAIN-LSTALAA-----IGENVLLID 42 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~n-lA~~la~-----~g~rVllID 42 (265)
..|.|.++--|+||||++.| +||.|.. +++.|+++-
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~ 267 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLG 267 (747)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 874899558888713588999999985356624668659982
No 316
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=90.70 E-value=0.94 Score=23.88 Aligned_cols=112 Identities=12% Similarity=0.153 Sum_probs=57.7
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 82033101333--22221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.- ..+....+..||.+|++... +..|+..+....+.+...+ ...+.++. +|-|+.|-.. .+
T Consensus 51 ~l~iwDtaGqe~~~~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~--~~~~~pii-lvGNK~DL~~--~r-- 123 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLV-LVGNKVDLES--QR-- 123 (172)
T ss_pred EEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH--CCCCCCEE-EEEECCCHHH--HC--
T ss_conf 99999788851357451556427865688731688889999999999999972--88998689-9850456676--18--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
.|...+.-.-|...|.+.++-+-+. ..-+.|..|+++|.+++
T Consensus 124 ---------------~Vs~~e~~~~a~~~~~~f~EtSAk~~~nV~e~F~~l~~~i~~k~ 167 (172)
T cd04141 124 ---------------QVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred ---------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---------------88999999999985997999747888288999999999998635
No 317
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=90.45 E-value=0.58 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=26.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCC--CEEEEE
Q ss_conf 99998088988889999999999998799--599998
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGE--NVLLID 42 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~--rVllID 42 (265)
-|+++.+.-|+|||.+|+..|..+-..|+ |+.++=
T Consensus 20 ~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~R 56 (205)
T pfam02562 20 DIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTR 56 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8079989998609999999999999718943799975
No 318
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=90.38 E-value=0.29 Score=26.85 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6874999980889888899999999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTAL 31 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~l 31 (265)
|+++|++.. ++-|+|||++|..+=-.|
T Consensus 10 k~G~~~aLv-G~SGSGKS~tc~A~Lg~L 36 (239)
T TIGR02770 10 KRGEVLALV-GESGSGKSLTCLAILGLL 36 (239)
T ss_pred ECCEEEEEE-CCCCCCHHHHHHHHHCCC
T ss_conf 324378887-487875899999985035
No 319
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.37 E-value=1.1 Score=23.58 Aligned_cols=110 Identities=13% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 82033101333--22221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.- ..+....+..||.+|++..- +..|+..+... ++.+.+..+.+.++. +|-|+.|-... +
T Consensus 53 ~l~iwDt~G~e~~~~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w---~~~i~~~~~~~~~~i-lVgNK~Dl~~~--r-- 124 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNW---MRNIEEHASEDVERM-LVGNKCDMEEK--R-- 124 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH---HHHHHHHCCCCCCEE-EECCCCCCHHC--C--
T ss_conf 999998999700116679985650588995568987999999999---999998669997057-64212450230--7--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ 257 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~ 257 (265)
.|+..+.-.-|...|.|.++-+-++ ..-+.|..|++++.++
T Consensus 125 ---------------~v~~~e~~~~a~~~~~~~~e~SAktg~nI~e~F~~l~~~i~~k 167 (167)
T cd01867 125 ---------------VVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKKK 167 (167)
T ss_pred ---------------CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf ---------------7999999999998099699982257907899999999999709
No 320
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=90.34 E-value=0.31 Score=26.68 Aligned_cols=85 Identities=11% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCCCCCEEEECC---------CCCCCCCCHHHHHHHCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 027820331013---------332222101123310011111231----1378887533577765543202677431002
Q gi|254780806|r 122 SDFSYIFLDCPP---------SFNLLTMNAMAAADSILVPLQCEF----FALEGLSQLLETVEEVRRTVNSALDIQGIIL 188 (265)
Q Consensus 122 ~~yD~IiiD~pp---------~~~~~~~~al~aad~viip~~p~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~ 188 (265)
+.+.+++.|.|+ |++.-.+.-+..+..++-++..+. -.+++...+.+.++.+...+.....+ +|+
T Consensus 204 ~~~~~~iADiPGLIeGA~~g~GLG~~FLrHieR~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~i--vv~ 281 (429)
T PRK12297 204 DGRSFVMADLPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQI--IVA 281 (429)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEE--EEE
T ss_conf 986699962674567744688866888887662467999997878777798999999999999868987269669--999
Q ss_pred CEEECCCHHHHHHHHHHHHHHC
Q ss_conf 0231253100112689998808
Q gi|254780806|r 189 TMFDSRNSLSQQVVSDVRKNLG 210 (265)
Q Consensus 189 N~~~~~~~~~~~~~~~l~~~~~ 210 (265)
|+.|-. ..++.++.+++.+.
T Consensus 282 NK~Dl~--~~~~~~~~~~~~~~ 301 (429)
T PRK12297 282 NKMDLP--EAEENLEEFKEKLA 301 (429)
T ss_pred ECCCCC--CHHHHHHHHHHHHH
T ss_conf 764585--76999999999753
No 321
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=90.32 E-value=0.44 Score=25.79 Aligned_cols=86 Identities=13% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCCCEEEECC---------CCCCCCCCHHHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 27820331013---------33222210112331001111123113-788875335777655432026774310020231
Q gi|254780806|r 123 DFSYIFLDCPP---------SFNLLTMNAMAAADSILVPLQCEFFA-LEGLSQLLETVEEVRRTVNSALDIQGIILTMFD 192 (265)
Q Consensus 123 ~yD~IiiD~pp---------~~~~~~~~al~aad~viip~~p~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~ 192 (265)
..++++.|.|+ |++.-.+.-++.+..++.++..+..+ +.....+.+.++.+...+..... -+|+|++|
T Consensus 205 ~~~~~iaDiPGlIegA~~g~GLG~~FLrHieR~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~--ivvlNK~D 282 (334)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPR--ILVLNKID 282 (334)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCE--EEEEECCC
T ss_conf 8678998667433552347774789987665343699999799889899999999999985065536987--99998810
Q ss_pred CCCHHH-HHHHHHHHHHHC
Q ss_conf 253100-112689998808
Q gi|254780806|r 193 SRNSLS-QQVVSDVRKNLG 210 (265)
Q Consensus 193 ~~~~~~-~~~~~~l~~~~~ 210 (265)
--.... .+..+.+.+.++
T Consensus 283 l~~~~~~~~~~~~~~~~~~ 301 (334)
T PRK12299 283 LLDEEERKEKIKELIKALG 301 (334)
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 6885678999999998709
No 322
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=90.27 E-value=0.46 Score=25.71 Aligned_cols=28 Identities=36% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8898888999999999999879959999
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+.||+|||++--.+...+...++.|++.
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~~~v~vt 28 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRGKIVLNV 28 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9798879999999999997689889998
No 323
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=90.26 E-value=0.29 Score=26.89 Aligned_cols=87 Identities=10% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCCCCEEEECC---------CCCCCCCCHHHHHHHCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 27820331013---------3322221011233100111112311----3788875335777655432026774310020
Q gi|254780806|r 123 DFSYIFLDCPP---------SFNLLTMNAMAAADSILVPLQCEFF----ALEGLSQLLETVEEVRRTVNSALDIQGIILT 189 (265)
Q Consensus 123 ~yD~IiiD~pp---------~~~~~~~~al~aad~viip~~p~~~----s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N 189 (265)
...|+|-|.|+ |++.-.+.-+..+..++-++..+.. .+.....+.+.++.+...+....++ ||+|
T Consensus 206 ~~~fviADIPGLIeGAs~G~GLG~~FLrHieRt~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~i--iv~N 283 (380)
T PRK12298 206 ERSFVIADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRW--LVFN 283 (380)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEE--EEEE
T ss_conf 86699987775557755587728999999875358999996887775199999999999999859766059879--9998
Q ss_pred EEECCCH-HHHHHHHHHHHHHCC
Q ss_conf 2312531-001126899988085
Q gi|254780806|r 190 MFDSRNS-LSQQVVSDVRKNLGG 211 (265)
Q Consensus 190 ~~~~~~~-~~~~~~~~l~~~~~~ 211 (265)
++|--.. ...+..+++.+.++.
T Consensus 284 K~Dl~~~~e~~~~~~~~~~~~~~ 306 (380)
T PRK12298 284 KIDLLDEEEAEERAKEIVEALGW 306 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 85489979999999999997088
No 324
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=90.16 E-value=0.35 Score=26.41 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCHH--HHHHHHCCCCEEEE-CCCCHHHHHHHHHHH
Q ss_conf 85201562678688--98777379857999-799989999999999
Q gi|254780806|r 210 GGKVYNTVIPRNVR--ISEAPSYGKPAIIY-DLKCAGSQAYLKLAS 252 (265)
Q Consensus 210 ~~~v~~~~Ip~~~~--i~~a~~~g~pv~~~-~p~s~~a~~~~~la~ 252 (265)
+..++-.-|+..+. +.+|.+.|-++..- -..+.+..++.+|..
T Consensus 210 PD~IivGEiR~~Ea~~~l~a~~TGH~g~ltTiHA~sa~~ai~RL~~ 255 (283)
T pfam00437 210 PDRIMVGEIRDGETADILRAANTGHPGSLSTLHANSAAGALTRLEQ 255 (283)
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 9989757869989999999997599840785714998999999998
No 325
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=90.11 E-value=0.27 Score=27.09 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=44.0
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHH
Q ss_conf 7820331013332--2221011233100111112311378887533577765543202677431002023125310-011
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL-SQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~-~~~ 200 (265)
+.|.|||||+.-. ..+..+...||.+++++..+.-..+ .+..+++..++ .++. +.+=+++|++|.-... ..+
T Consensus 83 r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~--~QT~eH~~l~~-~lgv--~~iIV~vNKmDlv~~~~~~~ 157 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQ--PQTSEHLAALE-IMGL--KHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCH--HHHHHHHHHHH-HCCC--CCEEEEEECCCCCCHHHHHH
T ss_conf 4799986898799999999766434766898643667750--77999999999-8499--86367750777788678999
Q ss_pred HHHHHHHHH
Q ss_conf 268999880
Q gi|254780806|r 201 VVSDVRKNL 209 (265)
Q Consensus 201 ~~~~l~~~~ 209 (265)
..+++++.+
T Consensus 158 ~~~ei~~~l 166 (203)
T cd01888 158 NYEQIKKFV 166 (203)
T ss_pred HHHHHHHHH
T ss_conf 999999985
No 326
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=90.04 E-value=0.97 Score=23.80 Aligned_cols=38 Identities=37% Similarity=0.364 Sum_probs=31.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 874999980889888899999999999987995999987
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+++-|+|= +==|+||||.+--|+..|...|++|.+.=-
T Consensus 2 ~g~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~trE 39 (208)
T COG0125 2 KGMFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTRE 39 (208)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 96299997-888898899999999999982980799868
No 327
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=89.93 E-value=0.82 Score=24.23 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=58.6
Q ss_pred CCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHH
Q ss_conf 2033101333--22221011233100111112-31137888753357776554320267743100202312531001126
Q gi|254780806|r 126 YIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVV 202 (265)
Q Consensus 126 ~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~ 202 (265)
+-|.||++.- ..++...+..||.+|++..- +..|+..+...++.+++........+. .-+|-|+.|-. ..|
T Consensus 52 l~iwDtaGqe~~~~~~~~y~~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~-iiLVGNK~DL~--~~R--- 125 (215)
T cd04109 52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL-VVLVGNKTDLE--HNR--- 125 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCHH--HHC---
T ss_conf 999969985002378999997515137741478678999899999999998504577852-99997545428--647---
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 899988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 203 SDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 203 ~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
.|+..+.-.-|...|.+.++-+.++ ...+.|..||++|++-.
T Consensus 126 --------------~Vs~ee~~~~A~~~g~~f~E~SAktg~nV~e~F~~la~~i~~~~ 169 (215)
T cd04109 126 --------------TVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGVD 169 (215)
T ss_pred --------------CCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf --------------76999999999982998999838999498999999999997683
No 328
>PRK06398 aldose dehydrogenase; Validated
Probab=89.90 E-value=0.52 Score=25.39 Aligned_cols=41 Identities=15% Similarity=0.406 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|.+-+.|++.|..+-+|.|+. +|..|++.|.+|.++|.+..
T Consensus 1 M~~L~gKvalVTGgs~GIG~a-----ia~~la~~Ga~V~~~~~~~~ 41 (256)
T PRK06398 1 MRDLRDKVVIVTGGSSGIGLA-----IVSRFVDEGSKVVSISRSEP 41 (256)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCCC
T ss_conf 989998989996878789999-----99999986999999948751
No 329
>PRK13695 putative NTPase; Provisional
Probab=89.84 E-value=0.68 Score=24.72 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=25.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 999808898888999999999999879959
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENV 38 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rV 38 (265)
-.+.+++=|+||||+.-.+...|...|++|
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v 34 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKV 34 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 999878999889999999999986369617
No 330
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=89.83 E-value=0.93 Score=23.92 Aligned_cols=110 Identities=9% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCCEEEECCC--CCCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 8203310133--322221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPS--FNLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~--~~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++. +..+...-+..|+.++++..- +..|+..+.+.++.+ ++. .+++++. +|-|+.|-.. .+
T Consensus 56 ~l~iwDtaGqe~f~~l~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i---~~~-~~~~p~i-LVGNK~DL~~--~r-- 126 (189)
T cd04121 56 KLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI---DEH-APGVPKI-LVGNRLHLAF--KR-- 126 (189)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH---HHH-CCCCCEE-EEEECCCHHH--CC--
T ss_conf 9999817886221167898866337048982279889999999999999---997-6898789-9613255033--08--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
.|+..+...-|...|.+.++-+.+. ...+.|..|++.++.+.
T Consensus 127 ---------------~V~~ee~~~~A~~~~~~f~EtSAk~g~nV~e~F~~l~~~il~~~ 170 (189)
T cd04121 127 ---------------QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred ---------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---------------89999999999988999999600679398999999999999865
No 331
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=89.81 E-value=1.4 Score=22.90 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=52.8
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC--HHHH
Q ss_conf 82033101333--22221011233100111112-3113788875335777655432026774310020231253--1001
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN--SLSQ 199 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~--~~~~ 199 (265)
.+-|.||++.- ..+....+..||.+|++... +..|+..+... ++.++.....++.+ -+|-|+.|-.. ....
T Consensus 51 ~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w---~~~i~~~~~~~~~i-ilVGNK~DL~~~r~V~~ 126 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAW---LTEIKEYAQEDVVI-MLLGNKADMSGERVVKR 126 (191)
T ss_pred EEEEEECCCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHH---HHHHHHHCCCCCEE-EEECCCCCCCCCCCCCH
T ss_conf 999997998633464647771177778999727988999999999---99999866678538-98612465530267999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 126899988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 200 QVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 200 ~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
+-.+.+ |...|.+.++-+-++ ..-+.|..|+++|..+.
T Consensus 127 ~e~~~~---------------------a~~~~~~f~EtSAkt~~nI~e~F~~i~~~i~~~~ 166 (191)
T cd04112 127 EDGERL---------------------AKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHH---------------------HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999---------------------9982997999854898097999999999998742
No 332
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=89.76 E-value=1 Score=23.64 Aligned_cols=39 Identities=33% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8749999808898888999999999999879959999878
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
++|||=|. +-=-+||||++.|.-...++.|--+..||+.
T Consensus 54 ~GRi~EiY-GpESsGKTTLal~~iA~~Qk~Gg~~afiDAE 92 (322)
T TIGR02012 54 KGRIIEIY-GPESSGKTTLALHVIAEAQKAGGVAAFIDAE 92 (322)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECH
T ss_conf 75079985-4898847899999999997439838998451
No 333
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=89.74 E-value=0.92 Score=23.95 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=31.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 87499998088988889999999999998-79959999878
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D 44 (265)
++..| +..++=|.|||+++.|+|..+|. .++.|++.-+-
T Consensus 195 ~~dLi-ilAaRP~mGKTafalnia~n~a~~~~~~v~iFSLE 234 (435)
T COG0305 195 PGDLI-IVAARPGMGKTALALNIALNAAADGRKPVAIFSLE 234 (435)
T ss_pred CCCEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 67779-97168999758999999999998558975999826
No 334
>PRK12338 hypothetical protein; Provisional
Probab=89.74 E-value=0.38 Score=26.19 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=24.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 68749999808898888999999999999879959999878
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
|++=|| ..++--|+||||+|.-||. +.|-+.+ |-.|
T Consensus 2 r~PliI-LiGGtSGvGKSTlAseLAs---RLgI~tv-IsTD 37 (320)
T PRK12338 2 RKPYVI-LIGSASGIGKSTIASEVAR---RLNIKHL-IETD 37 (320)
T ss_pred CCCEEE-EEECCCCCCHHHHHHHHHH---HCCCCEE-ECCH
T ss_conf 976799-9706888768889999998---5198711-0334
No 335
>KOG2004 consensus
Probab=89.74 E-value=0.25 Score=27.20 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=25.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7687499998088988889999999999998
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
.-++||+||. +--|||||+++-.+|.+|-+
T Consensus 435 s~qGkIlCf~-GPPGVGKTSI~kSIA~ALnR 464 (906)
T KOG2004 435 SVQGKILCFV-GPPGVGKTSIAKSIARALNR 464 (906)
T ss_pred CCCCCEEEEE-CCCCCCCCCHHHHHHHHHCC
T ss_conf 6788379986-89987732189999998487
No 336
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=89.71 E-value=0.67 Score=24.73 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf 82033101333--22221011233100111112-31137888753357776554320267743100202312
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
.+-|.||++.- ..+....+..||.+|++... +..|+..+....+.+..++.....+.++ -+|-|+.|-
T Consensus 50 ~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~pi-ilVgNK~Dl 120 (165)
T cd04140 50 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPI-MLVGNKCDE 120 (165)
T ss_pred EEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEECCCC
T ss_conf 99999899984654232445068857999813898789999999999999996158888878-998642464
No 337
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=89.68 E-value=1.5 Score=22.72 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=53.3
Q ss_pred CCCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 782033101333--22221011233100111112-311378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
+.+-|.||++.- ..+....+..||.+|++... +..|+..+...+. .+.+....+..+. +|-|+.|-... +
T Consensus 51 ~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~i~~w~~---~i~~~~~~~~~~i-lvgNK~DL~~~--r- 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQ---EIDRYASENVNKL-LVGNKCDLTDK--R- 123 (166)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHH---HHHHHCCCCCCEE-EEEEEECCCCC--C-
T ss_conf 999999899982346267888563267799711799899999999999---9998678777448-86132011314--6-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--899999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQ 256 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~ 256 (265)
.|...+.-.-|...|.+.++-+-++ ...+.|..|++++.+
T Consensus 124 ----------------~v~~~~~~~~a~~~~~~~~E~SAk~g~nI~e~F~~l~~~i~k 165 (166)
T cd01869 124 ----------------VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred ----------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf ----------------679999999999839969998768780689999999999971
No 338
>COG3903 Predicted ATPase [General function prediction only]
Probab=89.60 E-value=0.41 Score=25.97 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=31.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHH
Q ss_conf 9999808898888999999999999-87995999987877680112
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQGNASTG 52 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~q~~~~~~ 52 (265)
...-..+-|||||||++.+.|. ++ ...+-|..+|+-|-++.+.+
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v 59 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALV 59 (414)
T ss_pred HEEEEECCCCCCEEHHHHHHHH-HHHHCCCCEEEEECCCCCCHHHH
T ss_conf 0124651573000001655676-76533454444212404746676
No 339
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=89.59 E-value=0.41 Score=26.01 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=58.2
Q ss_pred CEEEECCC--CCCCCCCHHHHHHHCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHH
Q ss_conf 03310133--322221011233100111112311378887-533577765543202677431002023125310011268
Q gi|254780806|r 127 IFLDCPPS--FNLLTMNAMAAADSILVPLQCEFFALEGLS-QLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVS 203 (265)
Q Consensus 127 IiiD~pp~--~~~~~~~al~aad~viip~~p~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 203 (265)
=|+|||+. +|.-|.-.|.|+|..+.|+..- +|++ +.++.++--+- ++++++ -.+|+.|...+..-++++
T Consensus 84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA----KGiE~qT~KLfeVcrl---R~iPI~-TFiNKlDR~~rdP~ELLd 155 (528)
T COG4108 84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA----KGIEPQTLKLFEVCRL---RDIPIF-TFINKLDREGRDPLELLD 155 (528)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHEEEEEEECC----CCCCHHHHHHHHHHHH---CCCCEE-EEEECCCCCCCCHHHHHH
T ss_conf 61479986543236789998641046898603----5866889999999850---598469-975023656688689999
Q ss_pred HHHHHHCCCCCC--CCCCCCHHHH
Q ss_conf 999880852015--6267868898
Q gi|254780806|r 204 DVRKNLGGKVYN--TVIPRNVRIS 225 (265)
Q Consensus 204 ~l~~~~~~~v~~--~~Ip~~~~i~ 225 (265)
++++.++....+ +.|.....+.
T Consensus 156 EiE~~L~i~~~PitWPIG~gk~F~ 179 (528)
T COG4108 156 EIEEELGIQCAPITWPIGMGKDFK 179 (528)
T ss_pred HHHHHHCCCEECCCCCCCCCCCCC
T ss_conf 999985775035524456885643
No 340
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=89.50 E-value=0.39 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=18.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9998088988889999999999998799599998
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
|++. ++--|||||+--. ..|.++.+-|
T Consensus 3 VAii-G~pNvGKSTLlN~------l~~~~~~V~~ 29 (170)
T cd01898 3 VGLV-GLPNAGKSTLLSA------ISNAKPKIAD 29 (170)
T ss_pred EEEE-CCCCCCHHHHHHH------HHCCCCEEEC
T ss_conf 8998-9999989999999------9678760325
No 341
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=89.41 E-value=0.55 Score=25.25 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.4
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 9808898888999999999999879959
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENV 38 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rV 38 (265)
+.++.=|+||||+.-.++..|...|.+|
T Consensus 3 ~ITG~pGvGKTTli~kv~~~l~~~~~~v 30 (168)
T pfam03266 3 FITGPPGVGKTTLVKKVIELLKSEGVKV 30 (168)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9978999889999999999998679707
No 342
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=89.31 E-value=0.84 Score=24.17 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=34.2
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCC-CCCCHHHCC
Q ss_conf 99808898888999999999999879-95999987877-680112124
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIG-ENVLLIDLDPQ-GNASTGLGI 55 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g-~rVllID~D~q-~~~~~~l~~ 55 (265)
+++.+..|.||||+-.-|+..+.+.+ -+++++|-|-- -..+..+|-
T Consensus 439 T~I~G~tGaGKTvLl~~lla~~~k~~~~~iv~fDk~~g~~~~~~a~gG 486 (796)
T COG3451 439 TLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGAYIFIEALGG 486 (796)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 499889888789999999999987459818998489735778887498
No 343
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=89.27 E-value=0.35 Score=26.42 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=64.8
Q ss_pred EEEECCC--CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf 3310133--3222210112331001111123113788875-335777655432026774310020231253100112689
Q gi|254780806|r 128 FLDCPPS--FNLLTMNAMAAADSILVPLQCEFFALEGLSQ-LLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSD 204 (265)
Q Consensus 128 iiD~pp~--~~~~~~~al~aad~viip~~p~~~s~~~~~~-~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~ 204 (265)
|+|||+. +|.-|.-.|.|+|.++.++..- +|++. ..+.++-.+-+ +++++ -.+|+.|......-|.+++
T Consensus 84 LLDTPGH~DFSEDTYRTL~A~D~~~M~IDaA----KG~E~~T~KL~EV~RLR---~~PI~-TF~NKLDR~~~~P~ELlDE 155 (530)
T TIGR00503 84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAA----KGVETRTRKLMEVTRLR---DLPIL-TFINKLDRDIRDPLELLDE 155 (530)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHEEEHHCC----CCHHHHHHHHHHHHHHC---CCCHH-HHHHHCCCCCCCHHHHHHH
T ss_conf 0368588876404679999851230011112----56123424454201000---47443-3523206543553788888
Q ss_pred HHHHHCCCCCCCC--CCCCHHHH-HHHHCCCCEEEEC
Q ss_conf 9988085201562--67868898-7773798579997
Q gi|254780806|r 205 VRKNLGGKVYNTV--IPRNVRIS-EAPSYGKPAIIYD 238 (265)
Q Consensus 205 l~~~~~~~v~~~~--Ip~~~~i~-~a~~~g~pv~~~~ 238 (265)
+++.++....... |---..|. -.......++.|.
T Consensus 156 vE~~L~~~~~~~~~PIG~G~~F~GVY~~~~~~~yLy~ 192 (530)
T TIGR00503 156 VENELKINCAPITYPIGCGKLFKGVYHLLKDEIYLYQ 192 (530)
T ss_pred HHHHHCCCEEEEECCCCCCCCCHHHHHHHCCEEEEEE
T ss_conf 8877064113430565788431135543014066763
No 344
>PRK09519 recA recombinase A; Reviewed
Probab=89.25 E-value=1.2 Score=23.23 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=34.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8749999808898888999999999999879959999878
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
++||+-+. +.-.+||||++.|.....++.|-.+..||+.
T Consensus 59 rGRIvEIy-GpESSGKTTLALH~IAeaQK~GG~aAfIDAE 97 (790)
T PRK09519 59 RGRVIEIY-GPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (790)
T ss_pred CEEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 60499987-8977658999999999998539979999520
No 345
>PRK06761 hypothetical protein; Provisional
Probab=89.24 E-value=0.94 Score=23.88 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=30.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCC
Q ss_conf 749999808898888999999999999879959999-8787
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI-DLDP 45 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI-D~D~ 45 (265)
+|.| |+-+=-|+||||++--|+-.|..+|..|-+. .+|+
T Consensus 2 ~kLI-iIEGlPGsGKSTta~~l~d~L~~~g~~v~~~~Egd~ 41 (281)
T PRK06761 2 TKLI-IIEGLPGFGKSTTAHLLNDKLSQLKIEVELFVEGDL 41 (281)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 6179-996689998014999999999866985389950789
No 346
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=89.20 E-value=0.96 Score=23.84 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88988889999999999998799599998787
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+.=|+||||+..-|+..+.+.+-++.++|-|-
T Consensus 453 G~TGsGKTtl~~fL~aq~~ky~~~~f~fDkd~ 484 (800)
T PRK13898 453 GPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDR 484 (800)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 99999899999999999875488799997999
No 347
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=89.10 E-value=0.34 Score=26.44 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCCCCCEEEECCCCCCCCCC---HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH
Q ss_conf 02782033101333222210---112331001111123113788875335777655432026774310020231253100
Q gi|254780806|r 122 SDFSYIFLDCPPSFNLLTMN---AMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS 198 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~~~~~~---al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~ 198 (265)
+.+.|+|+|+|+.- .++.| +...||..|+++..+.--+..+. +++. +...++. +..=+++|++|.- ...
T Consensus 105 ~~r~~~i~DaPGH~-~f~~NMitGas~aD~aiLvVdA~~G~~~QTr---eH~~-i~~llGI--~~iIVaVNKMDlV-~~~ 176 (475)
T PRK05124 105 EKRKFIIADTPGHE-QYTRNMATGASTCDLAILLIDARKGVLDQTR---RHSF-IATLLGI--KHLVVAVNKMDLV-DYS 176 (475)
T ss_pred CCEEEEEEECCCHH-HHHHHHHHHHHHCCEEEEEEECCCCCHHHHH---HHHH-HHHHCCC--CEEEEEEECHHCC-CCC
T ss_conf 87689997379638-7788898888767889999989889478889---9999-9986599--8599998504313-543
Q ss_pred HHHHHHHHHH
Q ss_conf 1126899988
Q gi|254780806|r 199 QQVVSDVRKN 208 (265)
Q Consensus 199 ~~~~~~l~~~ 208 (265)
++.++++++.
T Consensus 177 ~~~f~~I~~e 186 (475)
T PRK05124 177 EEVFERIRED 186 (475)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 348
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=89.05 E-value=0.92 Score=23.94 Aligned_cols=33 Identities=36% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 874999980889888899999999999987995999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
..|+|+|+ |=-||||+|.-+.+.|...|.++.+
T Consensus 109 ~~~~~aIT---GTnGKtTTT~L~~~~L~~~G~~a~~ 141 (476)
T TIGR01087 109 PAKVVAIT---GTNGKTTTTSLLYHLLKAAGLKAVL 141 (476)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 87379997---2686079999999999846997786
No 349
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.03 E-value=0.56 Score=25.21 Aligned_cols=31 Identities=42% Similarity=0.483 Sum_probs=22.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+|+++ +.=|+||||++--| ...|.+| +|+|-
T Consensus 1 iigiT-G~igSGKStv~~~l----~~~g~~v--~~aD~ 31 (179)
T cd02022 1 IIGLT-GGIGSGKSTVAKLL----KELGIPV--IDADK 31 (179)
T ss_pred CEEEE-CCCCCCHHHHHHHH----HHCCCEE--EECHH
T ss_conf 98863-78757899999999----9879909--96359
No 350
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability . This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). ; GO: 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process.
Probab=88.99 E-value=0.65 Score=24.83 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8749999808-898888999999999999879959999878
Q gi|254780806|r 5 KSRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
.+.|++|.|. -||.|||.+.+-||-.|..+|.++.++.--
T Consensus 31 ~~~~~~vGn~~~GG~Gktp~v~wl~~~l~~~g~~~~~~~~g 71 (342)
T TIGR00682 31 VPVVISVGNLSVGGTGKTPVVLWLAELLKDRGLRVGVLSRG 71 (342)
T ss_pred CCEEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 41367623244257875148787899998569818998535
No 351
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=88.97 E-value=0.77 Score=24.38 Aligned_cols=112 Identities=15% Similarity=0.266 Sum_probs=66.4
Q ss_pred HHHHHHHHH-HCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC-CCCCC--CEEECCCCCCCCCCC
Q ss_conf 999999999-87995999987877680112124633345411676302577121024-44444--200014887457750
Q gi|254780806|r 24 AINLSTALA-AIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILI-QTAIP--NLSIIPSTMDLLGIE 99 (265)
Q Consensus 24 a~nlA~~la-~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~-~~~~~--~l~iipa~~~~~~~~ 99 (265)
...+|.+|- .+.-+|-+|-.||.||+=. +++.|+++-. +-..| |-|++|.-.+..-.|
T Consensus 193 ItGi~ryLK~~~~~~~~ivGaDP~GSila------------------~pE~LN~t~~t~Y~VEGiGyDF~P~vlDR~v~D 254 (527)
T TIGR01137 193 ITGIARYLKDESNPKVRIVGADPEGSILA------------------QPEELNKTGRTPYKVEGIGYDFIPTVLDRKVVD 254 (527)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCEEC------------------CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 55455654321389338998769853321------------------764655578983148762147768523765254
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHH--------HHCCCCCCCCCHHHHH
Q ss_conf 00123222210233322476510278203310133322221011233--------1001111123113788
Q gi|254780806|r 100 MILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAA--------DSILVPLQCEFFALEG 162 (265)
Q Consensus 100 ~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aa--------d~viip~~p~~~s~~~ 162 (265)
.....+-...|.+.|-|.. + +=+| |+++-|--...||.+| |.++||+-|| |+|+
T Consensus 255 ~w~k~~D~~SF~maRrLi~---e--EGlL--vGGS~GsAvvaal~~A~~hP~l~~~~~~VvlLPD--S~R~ 316 (527)
T TIGR01137 255 EWIKTDDKESFKMARRLIK---E--EGLL--VGGSSGSAVVAALKVAEDHPELKEDQVIVVLLPD--SIRN 316 (527)
T ss_pred EEEEECCHHHHHHHHHHHH---H--CCEE--EECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--CCCH
T ss_conf 4688088168999999987---4--4726--4043035899999998726788888789998468--7300
No 352
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=88.93 E-value=0.45 Score=25.77 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCCCCEEEECCCC
Q ss_conf 3224765102782033101333
Q gi|254780806|r 114 KALSVQLTSDFSYIFLDCPPSF 135 (265)
Q Consensus 114 ~~l~~~l~~~yD~IiiD~pp~~ 135 (265)
+.+...+..+||.=+|=|+|+.
T Consensus 354 eiiqERLeREf~ldlI~TaPsV 375 (603)
T COG0481 354 EIIQERLEREFDLDLITTAPSV 375 (603)
T ss_pred HHHHHHHHHHHCCCEEECCCCE
T ss_conf 9999999876086348438946
No 353
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=88.92 E-value=0.42 Score=25.92 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99998088988889999999999998799599
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVL 39 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVl 39 (265)
+|++ |++-|+||||++.-||-. .|++..
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~---~gl~~v 29 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEH---LGLKLV 29 (179)
T ss_pred EEEE-CCCCCCCCHHHHHHHHHH---HCCCEE
T ss_conf 7996-179999702799999998---297156
No 354
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=88.91 E-value=0.8 Score=24.28 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=29.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9998088988889999999999998799599998787
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+.+.++==|+||||+--++... ...|+|+++|=.|.
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~ 37 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDF 37 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECC
T ss_conf 6999348878899999999984-44898479999336
No 355
>PRK07429 phosphoribulokinase; Provisional
Probab=88.87 E-value=1.1 Score=23.39 Aligned_cols=38 Identities=34% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87499998088988889999999999998799599998787
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+.=+|.|+ +--|+||||++-.|...|.. .+|.+|-.|-
T Consensus 7 rP~IIGIA-GgSGSGKTTv~r~I~~~fg~--~~VtvI~~Dd 44 (331)
T PRK07429 7 RPVIIGVA-GDSGCGKSTFLRRLADLFGE--ELVTVICLDD 44 (331)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHCC--CCEEEEECCC
T ss_conf 99899985-78877899999999998388--8779994786
No 356
>PRK04195 replication factor C large subunit; Provisional
Probab=88.82 E-value=0.9 Score=23.99 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=23.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99980889888899999999999987995999987
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
..+.++--|+||||++--||-. .|+.|+=+.+
T Consensus 42 ~lLL~GPpGvGKTT~a~~lAk~---~g~~viElNA 73 (403)
T PRK04195 42 ALLLYGPPGVGKTSLAHALAND---YGWEVIELNA 73 (403)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---HCCCEEEECC
T ss_conf 6998893998799999999998---4998599771
No 357
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=88.71 E-value=1.5 Score=22.62 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=53.1
Q ss_pred CCCEEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 820331013332--2221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.-. .+....+..||.+|++... +..|+..+...+ +.++...+++.++. +|-|+.|-... +
T Consensus 50 ~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~---~~i~~~~~~~~pii-lvgnK~Dl~~~--r-- 121 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWL---KELREYADPNVVIM-LVGNKSDLEDQ--R-- 121 (164)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH---HHHHHHCCCCCCEE-ECCCCCCHHHH--C--
T ss_conf 9999967994466477998833665368843689989999999999---99998679998255-11645685651--8--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ 257 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~ 257 (265)
.|+..+.-.-|...|.+.++-+-++ ...+.|..|+++++++
T Consensus 122 ---------------~V~~~e~~~~a~~~~~~~~e~SAk~~~~v~e~F~~l~~~i~k~ 164 (164)
T smart00175 122 ---------------QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164 (164)
T ss_pred ---------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf ---------------7999999999998499799983166908899999999999719
No 358
>PRK03839 putative kinase; Provisional
Probab=88.70 E-value=0.8 Score=24.30 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99998088988889999999999998799599
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVL 39 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVl 39 (265)
+|++ ++-=||||||++-.||.. .|++++
T Consensus 2 ~I~I-TGTPGtGKTTva~~La~~---lg~~~i 29 (180)
T PRK03839 2 IIAI-TGTPGVGKTTISKLLAEK---LGYEYV 29 (180)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHH---HCCEEE
T ss_conf 8999-789999989999999997---698798
No 359
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=88.69 E-value=1 Score=23.66 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=21.4
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 80889888899999999999987995999987877
Q gi|254780806|r 12 ANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 12 ~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
.-+-=|+|||+++-.+|..+ |.+..-|.+.++
T Consensus 4 L~GppG~GKT~l~~~lA~~~---~~~~~~i~~~~~ 35 (131)
T pfam07726 4 LEGVPGLAKTLLARTLARSL---GLDFRRIQFTPD 35 (131)
T ss_pred EECCCCCHHHHHHHHHHHHH---CCCCEEEEECCC
T ss_conf 89899876999999999995---998168883377
No 360
>KOG1969 consensus
Probab=88.61 E-value=0.84 Score=24.18 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=30.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
|..|-|...++--|.||||+|.-+|. +.||+|+=|-+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAk---qaGYsVvEINA 359 (877)
T KOG1969 323 RPPKKILLLCGPPGLGKTTLAHVIAK---QAGYSVVEINA 359 (877)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH---HCCCEEEEECC
T ss_conf 98400687536887872479999998---62854887325
No 361
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=88.53 E-value=0.45 Score=25.75 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88988889999999999998799599998
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
|==|+|||-+.+|+ .|+.++.+|+|=
T Consensus 36 GvTGsGKTFT~AnV---Ia~~~rPTLV~a 61 (667)
T TIGR00631 36 GVTGSGKTFTMANV---IAQVQRPTLVLA 61 (667)
T ss_pred EEECCCHHHHHHHH---HHHHCCCEEEEC
T ss_conf 32148627889899---998479849985
No 362
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=88.50 E-value=1.7 Score=22.34 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 820331013332--22210112331001111123-113788875335777-65543202677431002023125310011
Q gi|254780806|r 125 SYIFLDCPPSFN--LLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVE-EVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 125 D~IiiD~pp~~~--~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~-~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.+-|.||++.-. .+....+..||.++++...+ ..|+..+....+.+. .........+++. +|-|+.|-.. .+.
T Consensus 50 ~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~pii-lvgNK~Dl~~--~r~ 126 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV-VLGNKIDLEE--KRQ 126 (172)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE-EEEECCCHHH--CCC
T ss_conf 9999969998311068899865275799993389989999999999999997276776576389-9963368364--189
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CCEEEECCCC--HHHHHHHHHHHHHHHHHHH
Q ss_conf 2689998808520156267868898777379-8579997999--8999999999999999986
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYG-KPAIIYDLKC--AGSQAYLKLASELIQQERH 260 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g-~pv~~~~p~s--~~a~~~~~la~el~~~~~~ 260 (265)
|...+.-.-|...| .+.++-+.+. ..-+.|..|++.+++++|+
T Consensus 127 -----------------V~~~e~~~~a~~~~~~~~~E~SAk~~~nV~e~F~~l~~~~l~~~k~ 172 (172)
T cd01862 127 -----------------VSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQEKE 172 (172)
T ss_pred -----------------CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf -----------------9999999999976997899975267919899999999999986329
No 363
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=88.48 E-value=1.4 Score=22.96 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=35.2
Q ss_pred CEEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 74999980-8898888999999999999879959999878776801
Q gi|254780806|r 6 SRIITIAN-QKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 6 ~kvI~v~s-~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
+|-|.|.. -=-|.||-.+++.+|..|..+|++|-.+-+||.=|.+
T Consensus 1 tkyi~vtGGV~SglGKGi~~aSig~ll~~~g~~v~~~K~DpYlNvD 46 (275)
T pfam06418 1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVD 46 (275)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECC
T ss_conf 9399995985025631899999999999679636787415631238
No 364
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.47 E-value=0.54 Score=25.29 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=18.0
Q ss_pred ECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8088988889999999999998
Q gi|254780806|r 12 ANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 12 ~s~KGGvGKTT~a~nlA~~la~ 33 (265)
.++--|+||||++-.+|..|-.
T Consensus 50 f~GP~GiGKaTlA~~~A~~Ll~ 71 (352)
T PRK09112 50 FEGPEGIGKATLAFHLANHILS 71 (352)
T ss_pred EECCCCCCHHHHHHHHHHHHHC
T ss_conf 3589980899999999999866
No 365
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=88.45 E-value=1.6 Score=22.60 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 782033101333--222210112331001111123-11378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPSF--NLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~--~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
+.+-|.||++.- ..+....+..||.++++...+ ..|+..+......+.... .+..+++ -+|-|+.|-.. .++
T Consensus 48 v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~--~~~~~pi-ilVgNK~DL~~--~r~ 122 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVK--DDDNVPL-LLVGNKCDLED--KRQ 122 (164)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCCE-EEEEEEHHHHH--CCC
T ss_conf 999999898866248899998863768899997797788999999999999860--8788636-98733032334--177
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ 257 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~ 257 (265)
|+..+.-.-|...|.+.++-+-+. ..-+.|..|+++|.+|
T Consensus 123 -----------------v~~~e~~~~a~~~~~~~~E~SAk~g~nV~~~F~~l~~~i~~~ 164 (164)
T cd04139 123 -----------------VSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQR 164 (164)
T ss_pred -----------------CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf -----------------899999999998399899982687908899999999999729
No 366
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=88.44 E-value=0.97 Score=23.79 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=32.4
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 74999980889888899999999999987995999987877
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
++.+.+. +---.|||+++--|-.+.-++|++++.+.+|||
T Consensus 99 gp~v~vv-Ggsq~Gkts~~~tL~syalk~~~~pl~~nlDP~ 138 (424)
T COG5623 99 GPTVMVV-GGSQNGKTSFCFTLISYALKLGKKPLFTNLDPS 138 (424)
T ss_pred CCEEEEE-CCCCCCCEEHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9779998-887678310899999999971677507854888
No 367
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=88.34 E-value=1.5 Score=22.66 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 876874999980889888899999999999987995999987
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+.++-++|.|. |=-||||++.-++..|...|+++.+|-.
T Consensus 107 ps~~l~vigVT---GTNGKTTt~~~i~~il~~~g~~~~~iGT 145 (953)
T PRK11929 107 PSQDLSVVAVT---GTNGKTSCAQWLAQMLTRLGKPCGSIGT 145 (953)
T ss_pred CCCCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 67588789997---9997999999999999867998899832
No 368
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=88.22 E-value=1.4 Score=22.95 Aligned_cols=47 Identities=32% Similarity=0.386 Sum_probs=37.7
Q ss_pred CCCEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 68749999808-898888999999999999879959999878776801
Q gi|254780806|r 4 KKSRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 4 ~~~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
+.+|-|.|+.+ =-|-||=-+|+.||..|..+|++|-.|=+||.-|.+
T Consensus 2 ~~~KyifVTGGV~SslGKGI~AAS~grLL~~~gl~Vt~iKiDPYiN~D 49 (571)
T TIGR00337 2 KMMKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIIKIDPYINID 49 (571)
T ss_pred CCCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 861179994438504026789999999998558806576307755668
No 369
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.22 E-value=0.57 Score=25.16 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=27.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 687499998088988889999999999998799-5999987877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGE-NVLLIDLDPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~-rVllID~D~q 46 (265)
++++|+.| +=||+|-. .|.+|++.|- +..+||.|.-
T Consensus 10 ~~s~V~v~--G~GGvGs~-----~a~~LarsGVG~l~lvD~D~v 46 (231)
T cd00755 10 RNAHVAVV--GLGGVGSW-----AAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred HCCCEEEE--CCCHHHHH-----HHHHHHHCCCCEEEEEECCEE
T ss_conf 54978998--88636899-----999999809975999719990
No 370
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=88.17 E-value=0.29 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 49999808898888999999999999879959999
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
=.|+++ ++=.|||||+-=.|. |.++..+
T Consensus 4 ~~V~iv-G~pN~GKSsL~N~L~------~~~~a~v 31 (168)
T cd04163 4 GFVAIV-GRPNVGKSTLLNALV------GQKISIV 31 (168)
T ss_pred CEEEEE-CCCCCCHHHHHHHHH------CCCEEEE
T ss_conf 689999-999999999999995------8970332
No 371
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=88.13 E-value=0.41 Score=25.97 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCC
Q ss_conf 68749999808898888999999999999-879959999878776801
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~q~~~~ 50 (265)
+.+++||.. ++-|+||||++--|-...- ..| =.|+|.++-.+.+
T Consensus 386 ~~G~~vALV-GRSGSGKsTlv~LlPRFy~p~~G--~IllDG~~l~d~~ 430 (603)
T TIGR02203 386 EPGETVALV-GRSGSGKSTLVNLLPRFYEPDSG--QILLDGVDLQDYT 430 (603)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHCCCCCCCCCC--CEEECCCHHHHCC
T ss_conf 587359987-06885389998552366045888--5652784044302
No 372
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=87.93 E-value=0.7 Score=24.63 Aligned_cols=36 Identities=31% Similarity=0.311 Sum_probs=27.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8749999808898888999999999999879959999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+++=|-+ ++--|.||||++..||-.++.+|+=|=-+
T Consensus 262 raeGILI-AG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 262 RAEGILI-AGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred HHCCEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 4164699-56999974689999999998669688632
No 373
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=87.89 E-value=0.85 Score=24.14 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=42.5
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCC-CCCCHHHCCCCCC
Q ss_conf 7687499998088988889999999999998--7995999987877-6801121246333
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAA--IGENVLLIDLDPQ-GNASTGLGIELYD 59 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~--~g~rVllID~D~q-~~~~~~l~~~~~~ 59 (265)
.-++|-..+..+--|+|||-+|--||.+|.- ...|+-+|..-|. +.-+...|+.+..
T Consensus 190 sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~ 249 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNG 249 (459)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCC
T ss_conf 854588279658999887899999999970788778468998358866178764605688
No 374
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=87.89 E-value=0.47 Score=25.66 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC
Q ss_conf 27820331013332--22210112331001111123113788875335777655432026774310020231253
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN 195 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~ 195 (265)
.+.|-+||||+... ..+..++..+|.+++++....--.. +..+.+...+ .++ ++.+=+++|++|...
T Consensus 64 ~~~~~~IDtPGH~dF~~~~i~g~~~~D~aiLVVdA~eGv~~---QT~eh~~la~-~lg--i~~iiV~iNK~D~~~ 132 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP---QTREHLLLAR-QVG--VPYIVVFLNKADMVD 132 (195)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCH---HHHHHHHHHH-HHC--CCCEEEEEECCCCCC
T ss_conf 81699626896077888998635113626899852778747---8999999999-809--996279996877898
No 375
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=87.89 E-value=2 Score=21.99 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=53.1
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 82033101333--222210112331001111123-113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.- ..++...+..||.++++...+ ..|+..+... ++.+++..+....+ -+|-|+.|-.. .++
T Consensus 57 ~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w---~~~i~~~~~~~~~~-ilVGNK~DL~~--~r~- 129 (169)
T cd04114 57 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW---LREIEQYANNKVIT-ILVGNKIDLAE--RRE- 129 (169)
T ss_pred EEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHH---HHHHHHHCCCCCEE-EEECCCCCHHH--CCC-
T ss_conf 999998999844451557774236645998148988899999999---99999868988638-97311343454--178-
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--89999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELI 255 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~ 255 (265)
|+..+.-.-|...|.|.++-+.+. ..-+.|..||++|+
T Consensus 130 ----------------v~~~~~~~~a~~~~~~~~E~SAktg~nV~e~F~~la~~li 169 (169)
T cd04114 130 ----------------VSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169 (169)
T ss_pred ----------------CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf ----------------8999999999988999999868988088999999999879
No 376
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=87.88 E-value=0.34 Score=26.43 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=18.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999808898888999999999999879959999
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
.|++. ++=-|||||+-=.| .|+++..+
T Consensus 4 ~V~iv-G~pN~GKSTL~N~l------~g~~~~~v 30 (174)
T cd01895 4 RIAII-GRPNVGKSSLVNAL------LGEERVIV 30 (174)
T ss_pred EEEEE-CCCCCCHHHHHHHH------HCCCCEEE
T ss_conf 99999-89999899999998------38984443
No 377
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=87.82 E-value=1.4 Score=22.85 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=29.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHH------HCCCCEEEEECCC
Q ss_conf 749999808898888999999999999------8799599998787
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALA------AIGENVLLIDLDP 45 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la------~~g~rVllID~D~ 45 (265)
+..|+=+.+--|+|||.++..||...+ ..+.+|+-||...
T Consensus 42 ~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg 87 (261)
T pfam08423 42 TGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEG 87 (261)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCC
T ss_conf 7729999899888789999999999407096569997289993688
No 378
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=87.66 E-value=0.25 Score=27.23 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=38.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCC
Q ss_conf 6874999980889888899999999999987995999987877-68011212463334
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDR 60 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~ 60 (265)
.++++|-|. +--|+||||+|-.|...|.+.|+++.++|.|-- ..++.-||.+..++
T Consensus 441 ~~~~~iw~t-GlsgsGKstiA~~le~~L~~~g~~~~~LDGd~lR~gl~~dlgf~~~dR 497 (613)
T PRK05506 441 QKPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYVLDGDNVRHGLNRDLGFTDADR 497 (613)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHH
T ss_conf 997699997-789897479999999999977998799880898741045779798999
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.65 E-value=1.3 Score=23.03 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=28.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999808898888999999999999879959999878
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+...++-=|+||||+...+|..+| .|++||-|-..
T Consensus 92 ~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGE 126 (454)
T PRK11823 92 VVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGE 126 (454)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCC
T ss_conf 899507998889999999999985-59957998150
No 380
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=87.61 E-value=1.1 Score=23.48 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6874999980889888899999999999987995999987877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
--.||+.|..+=||.||-| |..|+..|..|+|.|+|..
T Consensus 422 LA~~Va~VtGGasGIG~~~-----A~rL~~eGAhvV~aD~d~~ 459 (709)
T TIGR02632 422 LARRVAFVTGGASGIGRET-----ARRLVDEGAHVVLADLDAE 459 (709)
T ss_pred CCCEEEEEECCCCCHHHHH-----HHHHHHCCCEEEEECCCHH
T ss_conf 1570688973886526899-----9999736977999623657
No 381
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=87.56 E-value=0.68 Score=24.71 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.6
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 987687499998088988889999999
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINL 27 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nl 27 (265)
|.+|+-||+.+ +-.||||||+.-.+
T Consensus 10 ~~~~~~Kilil--G~~~sGKTsll~~l 34 (173)
T cd04154 10 LKEREMRILIL--GLDNAGKTTILKKL 34 (173)
T ss_pred CCCCCEEEEEE--CCCCCCHHHHHHHH
T ss_conf 44573189999--89997889999998
No 382
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.48 E-value=1.2 Score=23.33 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 4999980889888899999999999987
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAI 34 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~ 34 (265)
--.-| ++--|+||+|++..+|.+|-..
T Consensus 40 HA~Lf-~Gp~GiGK~tlA~~~A~~ll~~ 66 (363)
T PRK07471 40 HAWLI-GGPQGIGKATLAYRMARFLLAT 66 (363)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHCC
T ss_conf 45876-7999818899999999998579
No 383
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=87.47 E-value=1.1 Score=23.41 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 7820331013332--22210112331001111123-11378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
+.+.+.|+++.-. .+....+..||.++++...+ ..|+..+.... +.++...+.+.++. +|-|+.|-.. .++
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~i~~~~---~~i~~~~~~~~~ii-lvgnK~Dl~~--~r~ 122 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWI---KELKQMRGNNISLV-IVGNKIDLER--QRV 122 (162)
T ss_pred EEEEEEECCCCCCCCCCCHHHEECCCEEEEEEECCCHHHHHHHHHHH---HHHHHHCCCCCCEE-EECCCCCCHH--HCC
T ss_conf 99999958997303556313301144579996389989999999999---99998769997468-6633213254--088
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--89999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELI 255 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~ 255 (265)
|...+.-.-|...|.+.++-+-+. ...+.|..|+++|+
T Consensus 123 -----------------v~~~e~~~~a~~~~~~y~e~Sak~g~nV~e~F~~l~~~il 162 (162)
T cd04123 123 -----------------VSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162 (162)
T ss_pred -----------------CCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf -----------------8999999999982998999812788198999999999869
No 384
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.43 E-value=0.62 Score=24.95 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=27.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
||+|+ +--|+||||++-.+...+... +|.+|-.|-
T Consensus 1 IIgVa-G~SGSGKTTv~~~i~~ifg~~--~v~vI~~D~ 35 (273)
T cd02026 1 IIGVA-GDSGCGKSTFLRRLTSLFGSD--LVTVICLDD 35 (273)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHCCC--CEEEEECCC
T ss_conf 98997-888786999999999985848--769996577
No 385
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=87.39 E-value=2.1 Score=21.82 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 782033101333--22221011233100111112-311378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
|.+-|.|+++.- ..+....+..||.++++... +..|+..+...++.+..... +.++.+ -+|-|+.|... +
T Consensus 49 ~~l~iwDt~g~~~~~~~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~--~~~~~~-ilVgnK~D~~~---~- 121 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST--NNDIVK-MLVGNKIDKEN---R- 121 (161)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCCEE-EEEEECCCCCC---C-
T ss_conf 9999999999842353422441321534899767826569999999999998568--888737-88731044000---6-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--899999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASE 253 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~e 253 (265)
.++..+...-|...|.+.++-+-+. ..-+.|..|+++
T Consensus 122 ----------------~v~~~~~~~~a~~~~~~y~e~Sak~g~nV~~~F~~l~~~ 160 (161)
T cd01863 122 ----------------EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ----------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf ----------------899999999999869999997158681599999999970
No 386
>PRK05380 pyrG CTP synthetase; Validated
Probab=87.37 E-value=1.9 Score=22.10 Aligned_cols=45 Identities=31% Similarity=0.390 Sum_probs=36.0
Q ss_pred CEEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 749999808-898888999999999999879959999878776801
Q gi|254780806|r 6 SRIITIANQ-KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 6 ~kvI~v~s~-KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
+|-|.|..+ =-|.||-.+++.|+..|..+|++|-++-+||.=|.+
T Consensus 2 tKyIfVTGGVvS~lGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD 47 (534)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGALLKARGLKVTIQKLDPYLNVD 47 (534)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 6099996983015740899999999999789658898414652258
No 387
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=87.33 E-value=1.6 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 889888899999999999987-99599998787
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAI-GENVLLIDLDP 45 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~ 45 (265)
+.-|+||||+-.-|+..+.+. +.+|.+.|-|-
T Consensus 448 GpTGsGKTvll~~l~~q~~ry~~~~vf~FDkd~ 480 (815)
T PRK13873 448 GPTGAGKSVLLALMALQFRRYPGSQVFAFDFGG 480 (815)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 889998999999999998644898489997898
No 388
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=87.31 E-value=1.4 Score=22.91 Aligned_cols=39 Identities=33% Similarity=0.332 Sum_probs=32.9
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 808898888999999999999879959999878776801
Q gi|254780806|r 12 ANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 12 ~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
..-=-|.||-.+++.+|..|..+|++|-.+-+||.=|.+
T Consensus 7 GGV~SglGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD 45 (255)
T cd03113 7 GGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVD 45 (255)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECC
T ss_conf 882015730899999999999789758898425650138
No 389
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=87.29 E-value=0.73 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 4999980889888899999999999
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTAL 31 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~l 31 (265)
-+|..+.+--||||||++.-||+-|
T Consensus 262 PiiILIGGaSGvGKSTlAseLA~RL 286 (492)
T PRK12337 262 PLHVLLGGVSGTGKSVLAAELAYRL 286 (492)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7699960788866888999999960
No 390
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.24 E-value=1.8 Score=22.28 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC
Q ss_conf 87499998088988889999999999998799599998787768011212
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG 54 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~ 54 (265)
..+-+.|+ +-=|+|||+.-.++...+..+|.++++.| |.|.....|.
T Consensus 41 e~~H~lv~-G~tGsGKT~~i~~li~~~~~rg~~~II~D--pkGe~~~~fy 87 (410)
T cd01127 41 EEAHTMII-GTTGTGKTTQIRELLASIRARGDRAIIYD--PNGGFVSKFY 87 (410)
T ss_pred HHCCEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEE--CCCHHHHHHH
T ss_conf 02747998-89999889999999999998699099995--8854999975
No 391
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=87.15 E-value=0.66 Score=24.79 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 9999808898888999999999999879959
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENV 38 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rV 38 (265)
-+.++.||-|+||||+-=-++|+| .|+++
T Consensus 31 ~~f~i~G~tGAGKtsLldAI~yAL--YGkP~ 59 (1063)
T TIGR00618 31 KLFVICGKTGAGKTSLLDAITYAL--YGKPV 59 (1063)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--CCCCC
T ss_conf 736777889983545999999987--28887
No 392
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=87.12 E-value=0.37 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=23.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 499998088988889999999999998799599998787
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|.|.|+ ++-|+||||++-.|--.- -.=||+=.|.+-+
T Consensus 1 Kr~~f~-G~~gCGKTTL~q~L~g~~-~~YKKTQAvE~~~ 37 (144)
T TIGR02528 1 KRIMFI-GSVGCGKTTLTQALQGEE-IKYKKTQAVEYKD 37 (144)
T ss_pred CEEEEE-ECCCCCHHHHHHHCCCCC-CCEEEEEEEEECC
T ss_conf 917887-158887443543116873-2102334454258
No 393
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=87.05 E-value=0.85 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=28.5
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 76874999980889888899999999999987995999
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
+...|+|+|. |-.||||++-.++..|...|+.+..
T Consensus 97 ~~~~~vIgIT---GSnGKTTtk~~i~~iL~~~g~~~~t 131 (452)
T PRK10773 97 QVPARVVALT---GSSGKTSVKEMTAAILSQCGNTLYT 131 (452)
T ss_pred CCCCCEEEEE---ECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 5997589999---1699625999999999972884124
No 394
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=86.93 E-value=1.1 Score=23.51 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=32.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 9998088988889999999999998-799599998787
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDP 45 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~ 45 (265)
|+|.++==|+||||++--|...+.+ +|-+|.+|-.|-
T Consensus 1 lCVLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 90432698787368999999998644476058986212
No 395
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.89 E-value=1.1 Score=23.46 Aligned_cols=41 Identities=24% Similarity=0.519 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|++-+.|++.|..+-+|.|+. +|..|++.|.+|.+.|.+..
T Consensus 1 M~~L~gK~alITGgs~GIG~a-----ia~~la~~G~~V~~~~r~~~ 41 (253)
T PRK12826 1 MRDLMGRVALVTGAARGIGRA-----IAVRFAADGADVIVVDICGQ 41 (253)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 998899889994897789999-----99999987998999989889
No 396
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=86.88 E-value=0.61 Score=24.97 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEEC-CC-CCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCC
Q ss_conf 68749999808898888999999999999-87995999987-87-76801121246333454116763025771210244
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDL-DP-QGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQ 80 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~-D~-q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~ 80 (265)
|.+.+|-|. +.-|+||||+|=-+=...- +.| |||+ |. |. |.+ |..-+..+-=+|++.. + ...
T Consensus 489 ~~Ge~IGIv-GpSGSGKSTLTKL~QRLYtP~~G-qVLV-DG~DLA~~D--------P~wLRRQ~gVVLQEn~-L---Fsr 553 (703)
T TIGR01846 489 KPGEVIGIV-GPSGSGKSTLTKLLQRLYTPEHG-QVLV-DGVDLAIAD--------PAWLRRQVGVVLQENV-L---FSR 553 (703)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHCCCCCC-EEEE-CCCCCCCCC--------CCHHHHCCEEEEECCH-H---HCC
T ss_conf 786579987-27898678999998861488887-4777-030001018--------5201022302340002-1---012
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCHHHHH
Q ss_conf 44442000148874577500012322221023332247651027820331013332222--1011233
Q gi|254780806|r 81 TAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT--MNAMAAA 146 (265)
Q Consensus 81 ~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~--~~al~aa 146 (265)
+..||+.+- ++.. ..|...+. .+..--.+|+. .+.+.||-.+--=++++|--. +-||+-|
T Consensus 554 SirdNI~l~--~P~~-~~E~Vi~A--A~LAGA~dFI~-~Lp~GY~T~vgE~G~~LSGGQRQRIAiARA 615 (703)
T TIGR01846 554 SIRDNIALC--NPGA-SVEHVIAA--AKLAGAHDFIS-ELPQGYNTEVGEKGANLSGGQRQRIAIARA 615 (703)
T ss_pred CHHHHHHHC--CCCC-CHHHHHHH--HHHCCHHHHHH-HCCCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 278898517--7776-98999999--86218589997-363767740012415667337899999999
No 397
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=86.87 E-value=1.5 Score=22.73 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=27.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEEC-CCC
Q ss_conf 68749999808898888999999999999-87995999987-877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDL-DPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~-D~q 46 (265)
+.+|++++. ++-|+||||+..-|-...- ..| .|++-|. |.+
T Consensus 409 ~~G~t~AlV-G~SGsGKSTii~LL~RfYdP~~G-~I~i~Dg~di~ 451 (1467)
T PTZ00265 409 KEGKTYAFV-GESGCGKSTILKLIERLYDPTEG-DIIINDSHNLK 451 (1467)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCH
T ss_conf 389779986-68887566799999632688998-69978997802
No 398
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=86.82 E-value=1 Score=23.74 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=30.6
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf 82033101333--22221011233100111112-31137888753357776554320267743100202312
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
.+.|.||++.- ..+....+.-||.++++... +..|+..+... ++.+++....+.++. +|-|+.|-
T Consensus 50 ~l~iwDt~G~e~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~---~~~i~~~~~~~~~ii-lvgnK~DL 117 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKW---LKELKEYAPENIPII-LVGNKIDL 117 (159)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH---HHHHHHHCCCCCCEE-EEEECCCC
T ss_conf 999997898265778899997541275672448988999999999---999998689888269-99974563
No 399
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.75 E-value=1.3 Score=23.05 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=30.9
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 749999808898888999999999999879959999878
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
.+.+ +..+..|+|||.+.--++..+...++++.-+++.
T Consensus 38 ~~~l-~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~ 75 (226)
T TIGR03420 38 DRFL-YLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHH
T ss_conf 8869-9989999988999999999986269957995299
No 400
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=86.65 E-value=0.92 Score=23.95 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 687499998088988889999999999998799599
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVL 39 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVl 39 (265)
+...+|+|. +-=|+||||+|-.||-.| |.+|.
T Consensus 2 ~~~~~IvI~-G~IG~GKSTLa~~La~~l---~~~~~ 33 (216)
T COG1428 2 NVAMVIVIE-GMIGAGKSTLAQALAEHL---GFKVF 33 (216)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHH---CCCEE
T ss_conf 866089984-464468789999999883---88502
No 401
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=86.63 E-value=2.3 Score=21.57 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=50.3
Q ss_pred CCCEEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 820331013332--2221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.-. .+....+..||.++++... +..|+..+.. .++.++.....+.++ -+|-|+.|-.. .+
T Consensus 53 ~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~i~~---w~~~i~~~~~~~~~i-ilVgnK~DL~~--~r-- 124 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVER---WLKELRDHADSNIVI-MLVGNKSDLRH--LR-- 124 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH---HHHHHHHHCCCCCEE-EEECCCCCHHH--HC--
T ss_conf 99999899972126789987332051489862698899999999---999999855577359-87023478688--57--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--8999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASEL 254 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el 254 (265)
.|+..+.-.-|...|.+.++-+-++ ..-+.|..|+++|
T Consensus 125 ---------------~Vs~~e~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i 164 (165)
T cd01868 125 ---------------AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ---------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ---------------8889999999998599799967888929899999999986
No 402
>PRK05872 short chain dehydrogenase; Provisional
Probab=86.63 E-value=1.1 Score=23.59 Aligned_cols=41 Identities=29% Similarity=0.516 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|..-+.|++.|..+-+|.|+- +|..|++.|.+|.++|.|.+
T Consensus 4 M~~L~gKvalITGassGIG~a-----iA~~la~~Ga~Vvl~dr~~~ 44 (296)
T PRK05872 4 MTSLDGKVVFVTGAARGVGAE-----LARRLHARGAKVALVDLEEA 44 (296)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 988599879992710589999-----99999987998999989999
No 403
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=86.53 E-value=1.5 Score=22.75 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=27.9
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 768749999808898888999999999999879959999878
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
..+.|.| |+.+=-|+|||+++-.+...+. +..+..||.|
T Consensus 9 ~~~Pkai-~laG~pGAGKS~~~~~~~~~~~--~~~~v~In~D 47 (191)
T pfam06414 9 QERPVAV-LLGGQPGAGKTELARALLEELG--GGNVVRIDPD 47 (191)
T ss_pred CCCCEEE-EEECCCCCCHHHHHHHHHHHCC--CCCCEEECCH
T ss_conf 7698799-9957998888999999987537--8993897135
No 404
>PRK07773 replicative DNA helicase; Validated
Probab=86.45 E-value=2.2 Score=21.71 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=30.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 87499998088988889999999999998-79959999878
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLD 44 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D 44 (265)
++..|.+ .++=|.|||+++.|+|...|. .+..|++.-+.
T Consensus 202 ~~~l~i~-a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLE 241 (868)
T PRK07773 202 PGQMIIV-AARPGVGKSTLGLDFARSCSIRHRLASVIFSLE 241 (868)
T ss_pred CCCEEEE-EECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7767999-828977777899999999998659965897305
No 405
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.42 E-value=0.98 Score=23.77 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 687499998088988889999999999998
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
++++++++. +.-|+||||+.-.|+-.+.-
T Consensus 32 ~~Ge~vaii-G~nGsGKSTL~~~l~Gll~P 60 (283)
T PRK13640 32 PRGSWTALI-GHNGSGKSTISKLINGLLLP 60 (283)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCC
T ss_conf 899999999-99998799999999640378
No 406
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=86.36 E-value=0.57 Score=25.14 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCCCCCEEEECCC--CCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH
Q ss_conf 0278203310133--32222101123310011111231137888753357776554320267743100202312531001
Q gi|254780806|r 122 SDFSYIFLDCPPS--FNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 122 ~~yD~IiiD~pp~--~~~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
.+|-+=|+|||+. +|-...-.|.+.|.+++++....-.+-...= -+++.+...++.+ +|+|+.|.......
T Consensus 66 ~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrF------VlkKAl~~gL~PI-VVvNKiDrp~Arp~ 138 (603)
T COG1217 66 NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRF------VLKKALALGLKPI-VVINKIDRPDARPD 138 (603)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCHHH------HHHHHHHCCCCCE-EEEECCCCCCCCHH
T ss_conf 8838987658986776625451143233489999755588873144------4899997499848-99967789998878
Q ss_pred HHHHHHHHHH
Q ss_conf 1268999880
Q gi|254780806|r 200 QVVSDVRKNL 209 (265)
Q Consensus 200 ~~~~~l~~~~ 209 (265)
++.+++.+.|
T Consensus 139 ~Vvd~vfDLf 148 (603)
T COG1217 139 EVVDEVFDLF 148 (603)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 407
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.22 E-value=0.85 Score=24.13 Aligned_cols=35 Identities=43% Similarity=0.577 Sum_probs=27.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 687499998088988889999999999998-7995999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLL 40 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVll 40 (265)
+++++++++ +.-|+||||+.-.|+-.+.- .| +|.+
T Consensus 26 ~~Ge~vaii-G~nGsGKSTL~~~l~Gll~P~~G-~I~v 61 (274)
T PRK13644 26 KKGEYIGII-GKNGSGKSTLALHLNGLLRPQKG-KVLV 61 (274)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCC-EEEE
T ss_conf 489999999-99998099999999706858887-2999
No 408
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=86.21 E-value=1.7 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 0889888899999999999987-99599998787
Q gi|254780806|r 13 NQKGGVGKTTTAINLSTALAAI-GENVLLIDLDP 45 (265)
Q Consensus 13 s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~ 45 (265)
-+.-|+||||+-.-|+..+.+. |.+|.+.|-|-
T Consensus 462 iGpTGsGKTvll~fl~aq~~ky~~~~vf~FDKd~ 495 (818)
T PRK13830 462 FGPTGSGKSTLLALIAAQFRRYAGAQIFAFDKGR 495 (818)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8999998899999999998642798389974887
No 409
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=86.18 E-value=0.64 Score=24.84 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=15.6
Q ss_pred CCCCEEECCCHHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 0020231253100-1126899988085201562
Q gi|254780806|r 186 IILTMFDSRNSLS-QQVVSDVRKNLGGKVYNTV 217 (265)
Q Consensus 186 iv~N~~~~~~~~~-~~~~~~l~~~~~~~v~~~~ 217 (265)
+.+||+|...+.. +--.+.+.+.+|.++.+++
T Consensus 113 laLNm~D~A~~~Gi~Id~~~L~~~LGvPVv~tv 145 (653)
T COG0370 113 LALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred EEECCHHHHHHCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 996127568864971269999998689889987
No 410
>PRK08589 short chain dehydrogenase; Validated
Probab=86.15 E-value=1.1 Score=23.51 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|..-+.||+.|..+-+|.|+.+ |..|++.|.+|++.|.+..
T Consensus 1 M~rL~gKvalVTGas~GIG~ai-----A~~la~~Ga~Vv~~d~~~~ 41 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQAS-----AIALAQEGAYVLAVDIAEA 41 (272)
T ss_pred CCCCCCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCHH
T ss_conf 9999979899978256999999-----9999986999999838278
No 411
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.86 E-value=1.3 Score=23.09 Aligned_cols=36 Identities=36% Similarity=0.452 Sum_probs=27.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE-EEEE
Q ss_conf 68749999808898888999999999999879959-9998
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENV-LLID 42 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rV-llID 42 (265)
+..++|+|. |==||||+|..+++.|...|+++ .+|-
T Consensus 106 ~~~~~IaVt---GTnGKTTtT~ll~~il~~~g~~~~~~iG 142 (459)
T PRK00421 106 RLRTSIAVA---GTHGKTTTTSLLAHVLAEAGLDPTFIIG 142 (459)
T ss_pred HCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 259649997---7888611899999999976998748857
No 412
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=85.85 E-value=0.85 Score=24.12 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 874999980889888899999999999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTAL 31 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~l 31 (265)
++.+| +..+--||||||+|.-+|.-|
T Consensus 88 ~p~II-LIGGasGVGkStIA~ElA~rL 113 (299)
T COG2074 88 RPLII-LIGGASGVGKSTIAGELARRL 113 (299)
T ss_pred CCEEE-EECCCCCCCHHHHHHHHHHHC
T ss_conf 87599-961788777257999999972
No 413
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=85.84 E-value=2.6 Score=21.33 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 82033101333--222210112331001111123-113788875335777655432-02677431002023125310011
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTV-NSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~-~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
.+-|.||++.- ..+....+..|+.+|++...+ ..|+..+...+ +.++... ...+.+ -+|-|+.|-... +
T Consensus 64 ~l~iwDtaGqe~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~---~~i~~~~~~~~~~i-ilVGNK~DL~~~--r- 136 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWM---SQLQTHAYCENPDI-VLCGNKADLEDQ--R- 136 (180)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHH---HHHHHHCCCCCCCE-EEECCCCCHHHC--C-
T ss_conf 9999989886304788899987543658999689889999899999---99998546689857-875032366750--8-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ 257 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~ 257 (265)
.|+..+.-.-|...|.|.++-+.++ ...+.|..|++.+++|
T Consensus 137 ----------------~V~~~e~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~~~ 179 (180)
T cd04127 137 ----------------QVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred ----------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf ----------------8899999999998499799980377919899999999999972
No 414
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=85.80 E-value=0.7 Score=24.63 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=14.2
Q ss_pred EEEEECCCCCCCHHHHHHHH
Q ss_conf 99998088988889999999
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINL 27 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nl 27 (265)
+|++. ++=-|||||+-=.|
T Consensus 1 tVaIv-G~PNvGKSTLlN~L 19 (188)
T pfam02421 1 TIALV-GNPNVGKTTLFNAL 19 (188)
T ss_pred CEEEE-CCCCCCHHHHHHHH
T ss_conf 98998-89998999999999
No 415
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=85.71 E-value=2.1 Score=21.89 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 499998088988889999999999998
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
+-++|+|+=-|+||||+.+.|-..|.+
T Consensus 162 ~~~~vIsGGPGTGKTttV~~lLa~l~~ 188 (607)
T PRK10875 162 RRISVISGGPGTGKTTTVAKLLAALIQ 188 (607)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 577899679998778899999999999
No 416
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=85.67 E-value=0.75 Score=24.46 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=38.1
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HH
Q ss_conf 7820331013332--22210112331001111123113788875335777655432026774310020231253100-11
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS-QQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~-~~ 200 (265)
..+.+||||+.-. ..+..++..+|.+++++..+.---.... +.+..++ ..+.+ .+. +++|++|.-.... ..
T Consensus 51 ~~i~~iDtPGh~~~~~~~~~~~~~aD~~llVvda~~g~~~q~~---e~~~~~~-~~~i~-~~i-vvlNK~D~v~~~~~~~ 124 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTR---EHLEILE-LLGIK-RGL-VVLTKADLVDEDWLEL 124 (164)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHH-HCCCC-CEE-EEEECCCCCCHHHHHH
T ss_conf 8999994878799999999987426725899861778888899---9999998-73887-278-7346342579789999
Q ss_pred HHHHHHHHH
Q ss_conf 268999880
Q gi|254780806|r 201 VVSDVRKNL 209 (265)
Q Consensus 201 ~~~~l~~~~ 209 (265)
..+++++.+
T Consensus 125 ~~~~i~~~l 133 (164)
T cd04171 125 VEEEIRELL 133 (164)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 417
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=85.60 E-value=1.5 Score=22.62 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=23.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99998088988889999999999998799599998787
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
||+++ +.=|+||||++--| ...|.+|. |+|-
T Consensus 2 iIgiT-G~IgsGKStv~~~l----~~~G~~vi--daD~ 32 (179)
T pfam01121 2 IVGLT-GGIGSGKSTVANLF----ADLGVPIV--DADV 32 (179)
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCCEE--ECHH
T ss_conf 89985-78647899999999----98799199--1809
No 418
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=85.56 E-value=0.5 Score=25.48 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCEEEECC---------CCCCCCCCHHHHHHHCCCCCCCCCH---------HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 820331013---------3322221011233100111112311---------3788875335777655432026774310
Q gi|254780806|r 125 SYIFLDCPP---------SFNLLTMNAMAAADSILVPLQCEFF---------ALEGLSQLLETVEEVRRTVNSALDIQGI 186 (265)
Q Consensus 125 D~IiiD~pp---------~~~~~~~~al~aad~viip~~p~~~---------s~~~~~~~~~~i~~~~~~~~~~~~~~~i 186 (265)
+|||=|-|+ |+++-.+--++-+..++-++..+.. .+++...+.++++.+...+-...++ |
T Consensus 210 ~fviADIPGLIEGAs~G~GLG~~FLKHIERt~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~--i 287 (296)
T TIGR02729 210 SFVIADIPGLIEGASEGKGLGHKFLKHIERTRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQI--I 287 (296)
T ss_pred EEEEEECCCCHHHHHCCCCCCHHHHHHHHHEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEE--E
T ss_conf 89998568615666268875335545752026688798068753424289888999999999997508736278079--9
Q ss_pred CCCEEEC
Q ss_conf 0202312
Q gi|254780806|r 187 ILTMFDS 193 (265)
Q Consensus 187 v~N~~~~ 193 (265)
|+|++|-
T Consensus 288 v~NK~Dl 294 (296)
T TIGR02729 288 VLNKIDL 294 (296)
T ss_pred EEEECCC
T ss_conf 9860677
No 419
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=1.9 Score=22.08 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=29.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99808898888999999999999879959999878
Q gi|254780806|r 10 TIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 10 ~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
..+++-=|+||||+-..++..+|+++ +||-|-..
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE 129 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE 129 (456)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECC
T ss_conf 99736898779899999999987059-57999677
No 420
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=85.47 E-value=0.97 Score=23.79 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=29.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 9999808898888999999999999879959999878776801
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
++=|+ +-=|+||||+--++.-.+ +..+|+++|-.|.|...+
T Consensus 36 ~lNfm-sspGSGKT~LiEk~~~~~-~~~~K~Avi~GD~~t~~D 76 (225)
T TIGR00073 36 VLNFM-SSPGSGKTTLIEKLIERL-DDEVKIAVIEGDVQTKND 76 (225)
T ss_pred EEEEC-CCCCCCHHHHHHHHHHHH-CCCCCEEEEECCHHHHHH
T ss_conf 99802-588611589999999984-578978999755322556
No 421
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=85.36 E-value=1.8 Score=22.27 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=24.9
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf 9808898888999999999999879--9599998
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIG--ENVLLID 42 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g--~rVllID 42 (265)
+...--|.|||+.+..++..+...+ .+|+++=
T Consensus 28 ~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~ 61 (201)
T smart00487 28 ILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV 61 (201)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9989999609999999999986338997599990
No 422
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.34 E-value=0.71 Score=24.59 Aligned_cols=16 Identities=44% Similarity=0.391 Sum_probs=6.3
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 0889888899999999
Q gi|254780806|r 13 NQKGGVGKTTTAINLS 28 (265)
Q Consensus 13 s~KGGvGKTT~a~nlA 28 (265)
|+..|+||||+.--|.
T Consensus 179 sGGTGSGKTTlLNal~ 194 (355)
T COG4962 179 SGGTGSGKTTLLNALS 194 (355)
T ss_pred ECCCCCCHHHHHHHHH
T ss_conf 6787887999999997
No 423
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=85.33 E-value=0.9 Score=24.01 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 999980889888899999999999
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTAL 31 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~l 31 (265)
||++ ++.-|+||||++-.||-.|
T Consensus 1 iIaI-dGpagsGKsT~ak~lA~~l 23 (147)
T cd02020 1 IIAI-DGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHH
T ss_conf 9888-6899789899999999990
No 424
>PRK10536 hypothetical protein; Provisional
Probab=85.33 E-value=1.1 Score=23.48 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 749999808898888999999999999879
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIG 35 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g 35 (265)
.+-|+|+.+.-|+|||-+|+..|..+-..+
T Consensus 73 ~~~ivf~~GpAGTGKT~lA~a~Al~~l~~~ 102 (262)
T PRK10536 73 SKQLIFATGEAGCGKTWISAAKAAEALIHK 102 (262)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 198399989998758999999999999858
No 425
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.24 E-value=0.87 Score=24.09 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+++++++++ +.-|+||||+.-.|+-.+--.+=+| .+|.
T Consensus 34 ~~Ge~vaiv-G~nGsGKSTLlk~l~Gll~p~~G~I-~v~G 71 (273)
T PRK13632 34 NEGEYVAIL-GHNGSGKSTISKILTGLLKPQSGEI-KIFG 71 (273)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEE-EECC
T ss_conf 499899999-9999869999999973877888759-9999
No 426
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=85.13 E-value=0.77 Score=24.39 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=26.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 749999808898888999999999999879959999878776801
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~ 50 (265)
+|||.+.++-||. ..|..+++.|++|++||-++-|...
T Consensus 1 ~~vvVIG~GpaG~-------~aA~~aa~~G~kV~lIEk~~~GGtC 38 (458)
T PRK06912 1 SKLVIIGGGPAGY-------VAAITAAQNGKEVTLIDEADLGGTC 38 (458)
T ss_pred CEEEEEEECHHHH-------HHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 9499990088999-------9999999785959999589978740
No 427
>PRK12829 short chain dehydrogenase; Provisional
Probab=85.09 E-value=1.3 Score=22.99 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|..-++||+.|..+-+|.|+.+ |..|++.|.+|.+.|.++.
T Consensus 6 m~~L~GKvalVTGgs~GIG~ai-----A~~la~~Ga~V~i~~r~~~ 46 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAI-----AEAFAEAGARVHVCDVSEA 46 (264)
T ss_pred CCCCCCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCHH
T ss_conf 7689999799947376899999-----9999987998999979989
No 428
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=85.04 E-value=1 Score=23.61 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 68749999808898888999999999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA 32 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la 32 (265)
+++.++++. +.-|+||||+.-.++-.+.
T Consensus 29 ~~Ge~~~ii-G~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 29 KKGETLGLV-GESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCC
T ss_conf 699899999-9999869999999972898
No 429
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.99 E-value=0.94 Score=23.89 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=32.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 68749999808898888999999999999879959999878776
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
-+.||+.|..+-+|.|+. +|..||+.|.+|.+.|-|++.
T Consensus 3 lk~Kv~lITGas~GIG~a-----iA~~~A~~Ga~Vii~~r~~~~ 41 (227)
T PRK08862 3 IKNSIILITSAGSVLGRT-----ISCHFARLGATLILCDQDQSA 41 (227)
T ss_pred CCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHHH
T ss_conf 999999997988799999-----999999879999999699999
No 430
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=84.98 E-value=0.85 Score=24.14 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=22.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98088988889999999999998799599998787
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|..+--|+||||++..||.. .| ...||.|-
T Consensus 3 iv~GvsGsGKSTia~~La~~---lg--~~~i~~D~ 32 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAER---LG--APFIDGDD 32 (150)
T ss_pred EEECCCCCCHHHHHHHHHHH---HC--CCEECCCC
T ss_conf 99918999999999999997---19--95641543
No 431
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=84.97 E-value=2.5 Score=21.36 Aligned_cols=39 Identities=23% Similarity=0.116 Sum_probs=32.5
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 49999808898888999999999999879959999878776
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
+.|.|. +-=|+|||++.-.+-..|... +++.+|-.|.+.
T Consensus 14 ~~i~v~-Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 14 LRIGVG-GPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred EEEEEC-CCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEEC
T ss_conf 899961-799867899999999999752-776899640400
No 432
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=84.97 E-value=1 Score=23.62 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCC
Q ss_conf 68749999808898888999999999999-87995999987877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDLDPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~D~q 46 (265)
+.+|.|+|. +--|+||||+..-|+-.+- +.| .|.+=|.+++
T Consensus 385 ~~G~r~Ai~-G~SG~GKsTLL~~L~G~l~P~~G-~vtl~G~~~~ 426 (566)
T TIGR02868 385 PPGERVAIL-GPSGSGKSTLLATLAGLLDPLQG-EVTLDGVPVS 426 (566)
T ss_pred CCCCCEEEE-CCCCCCHHHHHHHHHHHCCCCCC-CEEECCCCHH
T ss_conf 388608986-68876578999999840289999-1787773243
No 433
>PRK00300 gmk guanylate kinase; Provisional
Probab=84.89 E-value=1.2 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 9876874999980889888899999999
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLS 28 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA 28 (265)
|-.+++++|+++ +=-||||||+.-.|.
T Consensus 2 ~~~~~g~livis-GPSG~GK~tl~~~L~ 28 (208)
T PRK00300 2 MMMRRGLLIVLS-APSGAGKSTLVRALL 28 (208)
T ss_pred CCCCCCCEEEEE-CCCCCCHHHHHHHHH
T ss_conf 624188389999-999889999999999
No 434
>PRK08324 short chain dehydrogenase; Validated
Probab=84.84 E-value=2 Score=21.95 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=33.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 768749999808898888999999999999879959999878776
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
+-.+||..|..+-||.|+.+ |..|+..|.+|++.|.|+..
T Consensus 418 ~L~GKVALVTGga~GIG~A~-----A~~fa~eGA~Vvl~D~~~~~ 457 (676)
T PRK08324 418 PLAGKVALVTGAAGGIGLAT-----AKRLAAEGACVVLADIDEEA 457 (676)
T ss_pred CCCCCEEEEECCCCCHHHHH-----HHHHHHCCCEEEEEECCHHH
T ss_conf 88998799947988162999-----99999879989999588899
No 435
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=84.80 E-value=1.3 Score=23.08 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=18.3
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 874999980889888899999999
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLS 28 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA 28 (265)
+++.|++ |+.-||||||+.-.|=
T Consensus 3 ~G~l~vl-sgPSG~GKsTl~k~L~ 25 (191)
T COG0194 3 KGLLIVL-SGPSGVGKSTLVKALL 25 (191)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHH
T ss_conf 8639999-8998888899999998
No 436
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=84.72 E-value=2.9 Score=21.01 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
Q ss_conf 76874999980889888899999999999987995999987877680112
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTG 52 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~ 52 (265)
+...|-+-|+ +-=|+|||+.-.++-..+..+|..++++| |.|.+...
T Consensus 12 ~~~~~H~lvi-G~tGsGKT~~i~~~i~~~~~~~~s~iv~D--pKGe~~~~ 58 (386)
T pfam10412 12 RSETQHILIV-GTTGTGKTQALRELLDQIRARGDRAIIYD--PTGTFVER 58 (386)
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHH
T ss_conf 8776758998-89999888799999999997799199995--87368898
No 437
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=84.62 E-value=1.3 Score=23.12 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=27.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCC----CEEEEECC
Q ss_conf 499998088988889999999999998799----59999878
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGE----NVLLIDLD 44 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~----rVllID~D 44 (265)
=..+|. +.-|+||||++..+|..|.+.|+ .++-+--|
T Consensus 59 lhm~ft-G~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trd 99 (284)
T TIGR02880 59 LHMSFT-GNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred EEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHH
T ss_conf 267751-68987248999999999987154003626785300
No 438
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.60 E-value=1.2 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 6874999980889888899999999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTAL 31 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~l 31 (265)
+++++++++ +.-|+||||+.-.|+-.+
T Consensus 33 ~~Ge~vaii-G~sGsGKSTLl~ll~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIV-GHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCC
T ss_conf 599899999-999997999999996497
No 439
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=84.54 E-value=1.3 Score=23.07 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=28.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99998088988889999999999998799599998787768
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGN 48 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~ 48 (265)
++-++ .-=|+||||+-......|... +++.+|..|.|.+
T Consensus 106 ~lNl~-sSPGSGKTtLLe~ti~~L~~~-~~~aVIeGD~~T~ 144 (290)
T PRK10463 106 VLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV 144 (290)
T ss_pred EEEEC-CCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCH
T ss_conf 99930-699878899999999987336-7579996042356
No 440
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=84.43 E-value=1.5 Score=22.73 Aligned_cols=27 Identities=37% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988889999999999998799599998
Q gi|254780806|r 16 GGVGKTTTAINLSTALAAIGENVLLID 42 (265)
Q Consensus 16 GGvGKTT~a~nlA~~la~~g~rVllID 42 (265)
|=.||||++..|+..|...|+++..+-
T Consensus 3 GT~GKTTt~~ml~~iL~~~g~~~~~~g 29 (188)
T pfam08245 3 GTNGKTTTTELIAALLSAAGGVVGTGG 29 (188)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 758689999999999983899899838
No 441
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.23 E-value=1.9 Score=22.09 Aligned_cols=37 Identities=32% Similarity=0.414 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 987687499998088988889999999999998799599998787
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|.+|+ -|.++ +==|+||||+.-.||..| | .-.||+|-
T Consensus 1 M~~kk--nI~Li-G~mGsGKstvgk~LA~~l---~--~~fiD~D~ 37 (172)
T PRK05057 1 MAEKR--NIFLV-GPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (172)
T ss_pred CCCCC--CEEEE-CCCCCCHHHHHHHHHHHH---C--CCEEECHH
T ss_conf 99888--28988-999998899999999996---9--99687809
No 442
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=84.22 E-value=0.76 Score=24.41 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=19.9
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 6874999980889888899999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLS 28 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA 28 (265)
.++.+++|+ ++-|+||||+=.-|+
T Consensus 29 ~~GE~~~Iv-G~SGSGKSTLLHlLG 52 (221)
T TIGR02211 29 GKGEIVAIV-GSSGSGKSTLLHLLG 52 (221)
T ss_pred ECCCEEEEE-CCCCCCHHHHHHHHH
T ss_conf 066337987-367871689999873
No 443
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=84.17 E-value=1.2 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 6874999980889888899999999999987995999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
+++++++++ ++-|+||||+.--|+-.+....-++.+
T Consensus 25 ~~Ge~~~Iv-G~sGsGKSTLl~~l~g~~~~~~G~I~~ 60 (218)
T cd03290 25 PTGQLTMIV-GQVGCGKSSLLLAILGEMQTLEGKVHW 60 (218)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 699999999-999980999999985556567764998
No 444
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=84.03 E-value=2.4 Score=21.47 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=35.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHCC
Q ss_conf 999808898888999999999999879959999878-77680112124
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGI 55 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D-~q~~~~~~l~~ 55 (265)
|+|+ +.-|.|||.+.=.++...-..|.+|-+||.- .---|+..||-
T Consensus 492 ~~~~-g~sG~GKSf~~Q~~~~~~L~~G~kv~viDvG~Sy~KLC~~lgG 538 (900)
T TIGR02746 492 IAVV-GGSGAGKSFFMQELIVSVLSRGGKVWVIDVGRSYKKLCEMLGG 538 (900)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCC
T ss_conf 8997-2889871687989999985179848999607884888765187
No 445
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=84.02 E-value=3.1 Score=20.83 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=33.9
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6874999980889888899999999999987995999987877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
..+=||++. ++=|+||||+--.+...|.+...++.+|..||-
T Consensus 18 ~~~~vIgl~-G~WGsGKTs~l~~~~~~L~~~~~~~~~v~fn~W 59 (301)
T pfam07693 18 APGFVIGLY-GAWGSGKTSFLNLLEDELKEFPEEFHIVYFDPW 59 (301)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999799998-989999999999999998613688269998123
No 446
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=84.02 E-value=2.7 Score=21.25 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=26.9
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 687499998088988889999999999998-7995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~ 43 (265)
++++.+++. ++-|+||||+.--|...+.- .| ++. ||.
T Consensus 339 ~~Ge~vaIV-G~SGsGKSTLl~LL~g~y~p~~G-~I~-idg 376 (569)
T PRK10789 339 KPGQMLGIC-GPTGSGKSTLLSLIQRHFDVSEG-DIR-FHD 376 (569)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHCCCC-CEE-EEC
T ss_conf 899789987-99999879999999977642678-746-501
No 447
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.02 E-value=1.8 Score=22.25 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 987687499998088988889999999999998799599998787
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|.+-+.|++.|..+-+|.|+. +|..|++.|.+|++.|.+.
T Consensus 2 m~~l~gKvalVTGgs~GIG~a-----~A~~la~~Ga~V~i~~~~~ 41 (262)
T PRK13394 2 MSNLNGKTAVVTGAASGIGKE-----IALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCH
T ss_conf 978899989995857789999-----9999998799999997988
No 448
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.98 E-value=1.3 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.5
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 6874999980889888899999999999987995999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
+++++++++ +.-|+||||+.-.|+-.+.-..-++.+
T Consensus 50 ~~Ge~vaII-G~nGsGKSTL~~~l~Gll~p~~G~I~i 85 (320)
T PRK13631 50 EKNKIYFII-GNSGSGKSTLVTHFNGLIKSKYGTIQV 85 (320)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 599899999-499984999999997588899835998
No 449
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=83.94 E-value=1.3 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 68749999808898888999999999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA 32 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la 32 (265)
++++.++++ ++-|+||||+.--|+-.+.
T Consensus 61 ~~Ge~vaIV-G~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 61 EKGEMLAIT-GSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCC
T ss_conf 499999999-9999819999999957872
No 450
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=83.88 E-value=2.5 Score=21.44 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8768749999808898888999999999999879959999
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLI 41 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllI 41 (265)
+++.-|+|-|. |==||.+++..|+..|...|+||.+-
T Consensus 45 p~~~~~~IhVa---GTNGKGSt~~~l~~il~~~G~~vG~f 81 (416)
T PRK10846 45 LKPAPFVFTVA---GTNGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred CCCCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 86579989996---88557999999999999879973077
No 451
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=83.77 E-value=1.6 Score=22.47 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=44.5
Q ss_pred HHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1233100111112-311378887533577765543202677431002023125310011268999880852015626786
Q gi|254780806|r 143 MAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRN 221 (265)
Q Consensus 143 l~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~ 221 (265)
...||.++++..- ++.|++.+ +...+.+++. +.++.+++ +|-|+.|-++. ...+.+|.+. + ...|-+.
T Consensus 82 Y~~a~~~ll~Fdvt~~~Sfe~~--~~~Wi~Ei~~-~~p~~pii-LVGnK~DLr~d--~~~l~~L~~~-~----~~pVt~e 150 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSA--LKKWKAEIMD-YCPSTRIL-LIGCKTDLRTD--LSTLMELSNQ-K----QAPISYE 150 (232)
T ss_pred HCCCCEEEEEEECCCHHHHHHH--HHHHHHHHHH-HCCCCCEE-EEEECHHCCCC--HHHHHHHHHC-C----CCCCCHH
T ss_conf 4068789999968987999989--9999999998-68999789-99876021547--5778899756-8----8875799
Q ss_pred HHHHHHHHCCCC-EEEECCCC--HHHH-HHHHHHHHHHHH
Q ss_conf 889877737985-79997999--8999-999999999999
Q gi|254780806|r 222 VRISEAPSYGKP-AIIYDLKC--AGSQ-AYLKLASELIQQ 257 (265)
Q Consensus 222 ~~i~~a~~~g~p-v~~~~p~s--~~a~-~~~~la~el~~~ 257 (265)
+...-|...|-+ .+|-+-.. ...+ .|+..+..++++
T Consensus 151 eg~~~Ak~iga~~Y~E~SA~tge~~v~~vF~~a~~~~~~~ 190 (232)
T cd04174 151 QGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999749978998756866625999999999999854
No 452
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=83.74 E-value=0.93 Score=23.92 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999980889888899999999999987995999987
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
.|-|. +|||||||.+.=+ -.|.++..+++
T Consensus 33 tILvl-GKtGVGKSsTINS------ifgE~~~~~~a 61 (249)
T cd01853 33 TILVL-GKTGVGKSSTINS------IFGERKAATSA 61 (249)
T ss_pred EEEEE-ECCCCCHHHHHHH------HCCCCCCCCCC
T ss_conf 99998-0687645776776------50854134477
No 453
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=83.70 E-value=0.87 Score=24.07 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=38.4
Q ss_pred CCCCCEEEECC---------CCCCCCCCHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHHHHHHH---------HHC
Q ss_conf 27820331013---------332222101123310011111231-----1378887533577765543---------202
Q gi|254780806|r 123 DFSYIFLDCPP---------SFNLLTMNAMAAADSILVPLQCEF-----FALEGLSQLLETVEEVRRT---------VNS 179 (265)
Q Consensus 123 ~yD~IiiD~pp---------~~~~~~~~al~aad~viip~~p~~-----~s~~~~~~~~~~i~~~~~~---------~~~ 179 (265)
+..|++-|.|+ |++.-.+--+..+-.++-++..+. -.+.+...+...++.+... +..
T Consensus 205 d~~f~iADiPGLIeGAs~g~GLG~~FLRHieR~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~e 284 (495)
T PRK12296 205 DHTFTVADVPGLIPGASEGRGLGLDFLRHIERCAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAE 284 (495)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCC
T ss_conf 95289985664346500389843999998752547999996887666789699999999999971914304433232101
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHHHHH
Q ss_conf 6774310020231253100112689998
Q gi|254780806|r 180 ALDIQGIILTMFDSRNSLSQQVVSDVRK 207 (265)
Q Consensus 180 ~~~~~~iv~N~~~~~~~~~~~~~~~l~~ 207 (265)
.++ =||+|++|--. .++..+.+++
T Consensus 285 rpq--IVvlNKiDlp~--a~e~~e~~~~ 308 (495)
T PRK12296 285 RPR--LVVLNKIDVPD--ARELAEFVRP 308 (495)
T ss_pred CCE--EEEEECCCCCC--HHHHHHHHHH
T ss_conf 965--99996656757--6999999999
No 454
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.61 E-value=1.2 Score=23.18 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=26.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+++++++++ +.-|+||||++-.|+..+....=+| .+|.
T Consensus 31 ~~Ge~~aii-G~sGsGKSTL~~~l~Gl~~~~~G~I-~~~G 68 (277)
T PRK13642 31 TKGEWVSII-GQNGSGKSTTARLIDGLFEEFEGIV-KIDG 68 (277)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEE-EECC
T ss_conf 899899999-9999689999999963899888489-9999
No 455
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.56 E-value=0.81 Score=24.25 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=25.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 687499998088988889999999999998-7995999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLL 40 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVll 40 (265)
+++++++++ +.-|+||||+.-.++-.+.- .| +|.+
T Consensus 35 ~~Ge~~aIi-G~nGsGKSTL~~~l~Gll~p~~G-~v~~ 70 (289)
T PRK13645 35 KKNKVTCVI-GTTGSGKSTMIQLTNGLIISETG-QTIV 70 (289)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCC-EEEE
T ss_conf 899899999-99995799999999659889998-5999
No 456
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=83.45 E-value=0.49 Score=25.51 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECC---CCCCCCH
Q ss_conf 898888999999999999879959999878---7768011
Q gi|254780806|r 15 KGGVGKTTTAINLSTALAAIGENVLLIDLD---PQGNAST 51 (265)
Q Consensus 15 KGGvGKTT~a~nlA~~la~~g~rVllID~D---~q~~~~~ 51 (265)
=-|+||||++..||..|. ---||.| |++|...
T Consensus 3 VsG~GKStvg~~lA~~lg-----~~fidGDdlHp~aNi~K 37 (161)
T COG3265 3 VSGSGKSTVGSALAERLG-----AKFIDGDDLHPPANIEK 37 (161)
T ss_pred CCCCCHHHHHHHHHHHCC-----CCEECCCCCCCHHHHHH
T ss_conf 776577799999999809-----82333565699889998
No 457
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=83.43 E-value=0.52 Score=25.38 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=26.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 980889888899999999999987995999987
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
++-.|-|-|||-++.--|+.-|..|+.|-+|-.
T Consensus 135 IaEM~TGEGKTL~atlpaylnAL~G~gVHvvTv 167 (673)
T PRK12898 135 LAEMQTGEGKTLTATLPAGTAALAGRPVHVITV 167 (673)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 357507885899999999999736997089804
No 458
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=83.40 E-value=0.93 Score=23.91 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=27.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 6874999980889888899999999999987995999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
+++.+++|+ ++-|+||||++-.||-...-.+-+.++
T Consensus 37 ~~~QTlaiI-G~NGSGKSTLakMlaGmi~PTsG~il~ 72 (267)
T COG4167 37 REGQTLAII-GENGSGKSTLAKMLAGMIEPTSGEILI 72 (267)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 079679998-269974758999983555898854878
No 459
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=83.31 E-value=1.6 Score=22.58 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=19.5
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 987687499998088988889999999
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINL 27 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nl 27 (265)
+.+|+.||+.+ +-.|+||||+.-.+
T Consensus 10 ~~~~~~Ki~il--G~~~sGKTsll~~l 34 (173)
T cd04155 10 KSSEEPRILIL--GLDNAGKTTILKQL 34 (173)
T ss_pred CCCCCCEEEEE--CCCCCCHHHHHHHH
T ss_conf 56877589999--79999889999998
No 460
>PRK06484 short chain dehydrogenase; Validated
Probab=83.29 E-value=1.8 Score=22.24 Aligned_cols=40 Identities=25% Similarity=0.561 Sum_probs=32.9
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 876874999980889888899999999999987995999987877
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
.|.++|++.|..+-+|.|+. +|..|++.|.+|++.|-+..
T Consensus 1 ~~~eGKvalVTGas~GIG~a-----iA~~la~~Ga~V~~~dr~~~ 40 (530)
T PRK06484 1 REGQARVVLVTGAAGGIGRA-----CCQRFARAGDRVVMADRDLA 40 (530)
T ss_pred CCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 99999899997836689999-----99999987999999968889
No 461
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=83.26 E-value=1.5 Score=22.76 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEEC
Q ss_conf 68749999808898888999999999999-87995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~ 43 (265)
++++.++++ ++-|+||||+.--|...+. ..| ...||.
T Consensus 27 ~~G~~iaIv-G~sGsGKSTLl~ll~gl~~p~~G--~I~idg 64 (238)
T cd03249 27 PPGKTVALV-GSSGCGKSTVVSLLERFYDPTSG--EILLDG 64 (238)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHCCCCCCC--EEEECC
T ss_conf 699999999-99999899999998238618851--899999
No 462
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=83.21 E-value=1.4 Score=22.81 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=25.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 6874999980889888899999999999987995999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLL 40 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVll 40 (265)
+++++++++ +.-|+||||+.-.++..+.-.+=+|.+
T Consensus 35 ~~GE~v~ii-G~nGsGKSTL~r~l~gl~~P~~G~I~i 70 (281)
T PRK13633 35 KKGEFLVIL-GHNGSGKSTIAKHMNALLLPSEGKVYV 70 (281)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 799899999-999984999999997588788856999
No 463
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.20 E-value=1.4 Score=22.91 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 687499998088988889999999999998-7995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~ 43 (265)
++++++++. +.-|+||||+.-.|+-.+.- .| + +.+|.
T Consensus 28 ~~GE~vaiv-G~nGsGKSTL~~~l~Gll~p~~G-~-I~i~G 65 (276)
T PRK13650 28 KQGEWLSII-GHNGSGKSTTVRLIDGLLEAESG-S-IIIDG 65 (276)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCE-E-EEECC
T ss_conf 899899999-99998799999999738898860-8-99999
No 464
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=83.13 E-value=2.7 Score=21.19 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=34.8
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCC
Q ss_conf 87687499998088988889999999999998799599998787768011212463
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL 57 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~ 57 (265)
..+.+|.|+|+ |.|=.-+|+ |+.|+++|++|-+.|..|+..-=+.+|+..
T Consensus 189 ~~~tGKkVAII----GaGPAGLsa--Ay~L~~~Gh~VTVfE~~~~~GGmlryGIP~ 238 (652)
T PRK12814 189 APKSGKKVAII----GAGPAGLTA--AYYLLRKGHDVTIFDANEQAGGMMRYGIPR 238 (652)
T ss_pred CCCCCCEEEEE----CCCHHHHHH--HHHHHHCCCEEEEEECCCCCCCEEEECCCC
T ss_conf 78889979996----837899999--999997799069981588889867644863
No 465
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.08 E-value=1.9 Score=22.14 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8749999808898888999999999999879959999878776
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~ 47 (265)
..+=+++..+-=|+||||+.-.+...+......+..| .+|+.
T Consensus 41 ~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i-~~~~l 82 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKL-VNTRV 82 (269)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCCC
T ss_conf 4896599972998988999999998459345489997-69999
No 466
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.03 E-value=2 Score=21.99 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|.-..-||..|...-+|.|+. +|..|++.|++|.++|-|..
T Consensus 1 m~~~~mKvalITGas~GIG~a-----~A~~la~~G~~V~l~~R~~~ 41 (241)
T PRK07454 1 MSLNSMPTALITGASRGIGKA-----TALAFAKAGWDLALVARSQD 41 (241)
T ss_pred CCCCCCCEEEECCCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 998999889991758789999-----99999987998999989999
No 467
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.97 E-value=1.5 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 687499998088988889999999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTA 30 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~ 30 (265)
+++++++++ +..|+||||+.-.++-.
T Consensus 24 ~~Ge~~~ii-G~SGsGKSTll~~i~gL 49 (235)
T cd03261 24 RRGEILAII-GPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCC
T ss_conf 799899999-99997299999999759
No 468
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=82.94 E-value=2.4 Score=21.46 Aligned_cols=32 Identities=38% Similarity=0.452 Sum_probs=23.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 749999808898888999999999999879959999878
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
..+|.+. ++=|+||||++=-++ +.| +-+||+|
T Consensus 2 ~~iIglT-G~igsGKStva~~~~----~~G--~~vidaD 33 (201)
T COG0237 2 MLIIGLT-GGIGSGKSTVAKILA----ELG--FPVIDAD 33 (201)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HCC--CEEEECC
T ss_conf 6499995-788778899999999----779--9399886
No 469
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=82.91 E-value=1.3 Score=23.09 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 768749999808898888999999999999
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALA 32 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la 32 (265)
+.++.|+|+. +==|||||+++-.+|.+|.
T Consensus 346 ~~kg~Ilclv-GpPGvGKTSl~~sIA~al~ 374 (784)
T PRK10787 346 KIKGPILCLV-GPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHHHHHC
T ss_conf 6778779964-6998772469999999858
No 470
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=82.90 E-value=1.5 Score=22.64 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=25.5
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 687499998088988889999999999998-7995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~ 43 (265)
+.++.|++. ++-|+||||++=.|.-.+.- .| -..+|.
T Consensus 497 ~~Ge~vaIv-G~SGsGKSTL~KLL~gly~p~~G--~I~~dg 534 (709)
T COG2274 497 PPGEKVAIV-GRSGSGKSTLLKLLLGLYKPQQG--RILLDG 534 (709)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCC--EEEECC
T ss_conf 799889998-79999889999998367888885--599998
No 471
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=82.77 E-value=1.5 Score=22.76 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEEEC
Q ss_conf 68749999808898888999999999999-87995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA-AIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la-~~g~rVllID~ 43 (265)
+++++++++ +.-|+||||+.--|...+. ..| ...+|-
T Consensus 38 ~~Ge~vaIv-G~sGsGKSTL~~ll~gl~~p~~G--~I~idg 75 (226)
T cd03248 38 HPGEVTALV-GPSGSGKSTVVALLENFYQPQGG--QVLLDG 75 (226)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCC--EEEECC
T ss_conf 299999999-99998499999999645467887--899999
No 472
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=82.77 E-value=1.3 Score=23.05 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=26.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6874999980889888899999999999987995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
+++++++++ ++-|+||||+.-.|...+...|. +.||.
T Consensus 28 ~~Ge~vaIv-G~sGsGKSTLl~lL~gl~~~~G~--I~idg 64 (275)
T cd03289 28 SPGQRVGLL-GRTGSGKSTLLSAFLRLLNTEGD--IQIDG 64 (275)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHCCCCCE--EEECC
T ss_conf 799999999-99999799999999603578953--99998
No 473
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.77 E-value=1.6 Score=22.58 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.0
Q ss_pred CCCCCCCHHHHHHHHHHHHH-------HCCCCEEEEECC
Q ss_conf 08898888999999999999-------879959999878
Q gi|254780806|r 13 NQKGGVGKTTTAINLSTALA-------AIGENVLLIDLD 44 (265)
Q Consensus 13 s~KGGvGKTT~a~nlA~~la-------~~g~rVllID~D 44 (265)
=+-.|||||.++-.||..++ .+|+++.-+|+-
T Consensus 214 VGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg 252 (852)
T TIGR03345 214 TGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH
T ss_conf 579998799999999999976999867743856786788
No 474
>KOG2859 consensus
Probab=82.74 E-value=2.2 Score=21.68 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=32.5
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHH------HCCCCEEEEECCCCCC
Q ss_conf 8768749999808898888999999999999------8799599998787768
Q gi|254780806|r 2 EEKKSRIITIANQKGGVGKTTTAINLSTALA------AIGENVLLIDLDPQGN 48 (265)
Q Consensus 2 ~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la------~~g~rVllID~D~q~~ 48 (265)
+++.+.++-| ++-||+|||-+-.+++...- -++.-|+.||+|-.-+
T Consensus 34 ~~daG~~vEi-~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd 85 (293)
T KOG2859 34 EADAGTLVEI-SGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFD 85 (293)
T ss_pred CCCCCCEEEE-ECCCCCCHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCCCC
T ss_conf 6556867998-689986188999999888354534488506999996444112
No 475
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=82.71 E-value=1.3 Score=23.07 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=23.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7499998088988889999999999998799599998787
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
-|++ +. +=||+||||+...+....-..++..-+...++
T Consensus 6 ~kiv-v~-G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~ 43 (219)
T COG1100 6 FKIV-VL-GDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDP 43 (219)
T ss_pred EEEE-EE-CCCCCCHHHHHHHHHCCCCCCCCCCCEEECCC
T ss_conf 7999-99-99999889999999647676556761454043
No 476
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.59 E-value=1.6 Score=22.53 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 68749999808898888999999999999879959999878
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
+++++++++ +.-|+||||+.-.++-.+.-..=+|.+=+.|
T Consensus 31 ~~Ge~~aii-G~nGsGKSTLl~~l~GLl~p~~G~I~~~g~~ 70 (286)
T PRK13646 31 EQGKYYAIV-GQTGSGKSTLIQNINALLKPTTGTVTVDDIT 70 (286)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 699899999-9999819999999970788888759999898
No 477
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=82.55 E-value=2.4 Score=21.55 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=29.3
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4999980889888899999999999987995999987
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDL 43 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~ 43 (265)
||+-|+|.-||+ -+...+||.+|+++|+.|-++=.
T Consensus 1 kil~i~~~~GG~--e~~~~~La~~L~~~Gh~V~vit~ 35 (359)
T cd03808 1 KILHIVTVDGGL--YSFRLPLIKALRAAGYEVHVVAP 35 (359)
T ss_pred CEEEEECCCCHH--HHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 989997587659--99999999999976999999970
No 478
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=82.53 E-value=0.85 Score=24.13 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=22.4
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 80889888899999999999987995999987877
Q gi|254780806|r 12 ANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 12 ~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
.-+-=|+|||+++-.+|..+. |.+...|-+..+
T Consensus 4 l~Gp~G~GKT~la~~la~~l~--~~~~~~i~~~~~ 36 (139)
T pfam07728 4 LVGPPGTGKSELAERLAAALS--NRPVFYVQLTRD 36 (139)
T ss_pred EECCCCCHHHHHHHHHHHHCC--CCCCHHHCCCCC
T ss_conf 998997569999999999807--983111214655
No 479
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=82.39 E-value=1.7 Score=22.45 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=19.5
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 80889888899999999999987
Q gi|254780806|r 12 ANQKGGVGKTTTAINLSTALAAI 34 (265)
Q Consensus 12 ~s~KGGvGKTT~a~nlA~~la~~ 34 (265)
..+.-|+|||+++-.||..+++.
T Consensus 3 l~G~~G~GKS~~a~~la~~~~~~ 25 (105)
T pfam00910 3 LYGPPGCGKSTLAKYLARALLDH 25 (105)
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
T ss_conf 97999898899999999999998
No 480
>PRK06500 short chain dehydrogenase; Provisional
Probab=82.38 E-value=1.8 Score=22.19 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9876874999980889888899999999999987995999987877
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
|..-+.|++.|..+-+|.|+. +|..|++.|.+|.+.|-|.+
T Consensus 1 M~rl~gK~~lITGas~GIG~a-----iA~~la~~Ga~V~i~~r~~~ 41 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLE-----TARQFAAEGARVAITGRDAA 41 (249)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 989899889993768789999-----99999987999999969989
No 481
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.35 E-value=1.7 Score=22.36 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=32.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6874999980889888899999999999987995999987877
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q 46 (265)
-+.||+.|..+-+|.|+.+ |..|++.|.+|.+.|.++.
T Consensus 5 L~gKvalVTGas~GIG~ai-----A~~la~~Ga~V~i~~~~~~ 42 (253)
T PRK06172 5 FSGQVALVTGGAAGIGRAT-----AIAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCHH
T ss_conf 6999899937576899999-----9999987998999979889
No 482
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=82.31 E-value=1.1 Score=23.59 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 889888899999999
Q gi|254780806|r 14 QKGGVGKTTTAINLS 28 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA 28 (265)
++=-|||||+--.|.
T Consensus 3 G~pNvGKSTL~N~L~ 17 (158)
T cd01879 3 GNPNVGKTTLFNALT 17 (158)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 989888999999995
No 483
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=82.29 E-value=3.7 Score=20.42 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 68749999808898888999999999999879959999878
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
-.++-+.+. +.=|+||||.--.|-...-.+|.|+.+.|.-
T Consensus 183 sE~qH~li~-GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~ 222 (732)
T PRK13700 183 SEIQNFCLH-GTVGAGKSEVIRRLANYARQRGDMVVIYDRS 222 (732)
T ss_pred CHHHEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 203126774-6888889999999999999729958999399
No 484
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=82.24 E-value=2.3 Score=21.57 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=49.2
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 82033101333--22221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
.+-|.||++.- ..+....+..||.++++... +..|+..+... ++.++...+++..+. +|-|+.|-.. .++
T Consensus 50 ~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~~~~w---~~~i~~~~~~~~~ii-lVgNK~Dl~~--~r~- 122 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTW---LSDARALASPNIVVI-LVGNKSDLAD--QRE- 122 (161)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHHHHHHCCCCCEEE-EECCCCCCHH--CCC-
T ss_conf 999998999701226789984057778995368988999999999---999998679996498-6034344000--378-
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--8999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASEL 254 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el 254 (265)
|+..+.-.-|...+.+.++-+-++ ..-+.|..||++|
T Consensus 123 ----------------V~~~e~~~~a~~~~~~~~E~SAk~~~nV~e~F~~la~~i 161 (161)
T cd04113 123 ----------------VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred ----------------CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf ----------------899999999998599799974156905899999999709
No 485
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=82.22 E-value=1.4 Score=22.79 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=28.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 687499998088988889999999999998799599998787
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
+++.+++++ +.-|+||||+.-.|+..+.-..=+|.+.-.|.
T Consensus 31 ~~GE~v~Ii-G~nGsGKSTL~k~l~Gll~P~~G~V~~~g~d~ 71 (304)
T PRK13651 31 NQGEFIAII-GQTGSGKTTFIEHLNALLLPDTGTIEWIYFDE 71 (304)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 599899998-79998599999999669998871699942454
No 486
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=82.20 E-value=1.9 Score=22.06 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=25.3
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 768749999808898888999999999999879
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIG 35 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g 35 (265)
+.+.|||+|. |=+||||+.-.+++.|+..|
T Consensus 100 ~~~~kvIaIT---GS~GKTTTKe~la~iL~~~~ 129 (451)
T COG0770 100 KFNAKVIAIT---GSNGKTTTKEMLAAILSTKG 129 (451)
T ss_pred HCCCCEEEEE---CCCCCHHHHHHHHHHHHHCC
T ss_conf 3699689995---89970769999999986368
No 487
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=82.10 E-value=1.8 Score=22.19 Aligned_cols=32 Identities=38% Similarity=0.363 Sum_probs=23.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999808898888999999999999879959999878
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D 44 (265)
||+++ +=-|+||||+|-.|...+ + .+.+|=.|
T Consensus 1 iIgIa-G~S~SGKTTla~~L~~~l---~-~~~iI~qD 32 (187)
T cd02024 1 IVGIS-GVTNSGKTTLAKLLQRIL---P-NCCVIHQD 32 (187)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHC---C-CCEEECCC
T ss_conf 98996-888875999999999987---9-98897154
No 488
>PRK06921 hypothetical protein; Provisional
Probab=82.09 E-value=3.3 Score=20.73 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 889888899999999999987-9959999
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAI-GENVLLI 41 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~-g~rVllI 41 (265)
+.=|+|||-+++-+|-.|-.. |..|+-+
T Consensus 123 G~~G~GKThLa~aIa~~Ll~~~~~~Vly~ 151 (265)
T PRK06921 123 GQPGSGKTHLLTAAANELMRKKGVPVLYF 151 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 28989889999999999999629719998
No 489
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=82.08 E-value=1.8 Score=22.19 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 687499998088988889999999999998-799599998
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLID 42 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID 42 (265)
++++.|+++ ++-|+||||+.-.|...+.- .| -+++|
T Consensus 45 ~~Ge~vaIv-G~sGsGKSTL~~ll~gl~~p~~G--~I~id 81 (257)
T cd03288 45 KPGQKVGIC-GRTGSGKSSLSLAFFRMVDIFDG--KIVID 81 (257)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHCCCCCCC--EEEEC
T ss_conf 799999999-99998199999999605667888--89999
No 490
>CHL00181 cbbX CbbX; Provisional
Probab=82.04 E-value=2.1 Score=21.89 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 499998088988889999999999998799
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGE 36 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~ 36 (265)
.-.+| .+-=|+||||+|--+|..|...|.
T Consensus 60 ~h~vF-~GnPGTGKTTVARl~a~il~~lG~ 88 (287)
T CHL00181 60 LHMSF-TGSPGTGKTTVALKMADILYRLGY 88 (287)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 53888-789986799999999999998699
No 491
>TIGR01966 RNasePH ribonuclease PH; InterPro: IPR002381 Prokaryotic ribonuclease PH (2.7.7.56 from EC) (RNase PH) is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates . There is a similar protein in Caenorhabditis elegans that belongs to this group. More information about these proteins can be found at Protein of the Month: RNA Exosomes .; GO: 0000049 tRNA binding, 0004549 tRNA-specific ribonuclease activity, 0008033 tRNA processing.
Probab=81.97 E-value=0.94 Score=23.87 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=14.1
Q ss_pred HHHHHHCCCCEEEEECC-CCCC
Q ss_conf 99999879959999878-7768
Q gi|254780806|r 28 STALAAIGENVLLIDLD-PQGN 48 (265)
Q Consensus 28 A~~la~~g~rVllID~D-~q~~ 48 (265)
+.-|..+|.|++.|||| .|++
T Consensus 100 vvDl~aLGErTI~iDCDVlQAD 121 (237)
T TIGR01966 100 VVDLEALGERTIWIDCDVLQAD 121 (237)
T ss_pred HHHHHHCCCEEEEEECCEEECC
T ss_conf 7346234850279853343388
No 492
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=81.94 E-value=3.7 Score=20.42 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCCEEEEECCC
Q ss_conf 889888899999999999987----99599998787
Q gi|254780806|r 14 QKGGVGKTTTAINLSTALAAI----GENVLLIDLDP 45 (265)
Q Consensus 14 ~KGGvGKTT~a~nlA~~la~~----g~rVllID~D~ 45 (265)
+.=|+||||+..-|+..+.+. +.++..+|-|-
T Consensus 433 G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~fDkd~ 468 (789)
T PRK13853 433 GPIGRGKTTLMTFILAMLEQSMVDRAGAVVFFDKDR 468 (789)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 899998899999999999974223577089995886
No 493
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=81.91 E-value=0.94 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=16.9
Q ss_pred EEEECCCCCCCHHHHHHHHHH
Q ss_conf 999808898888999999999
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLST 29 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~ 29 (265)
|++..+--|+||||+=.-++.
T Consensus 33 iViltGPSGSGKTTLLtLiG~ 53 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 798437889846889998876
No 494
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.88 E-value=2.1 Score=21.86 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 987687499998088988889999999999998799599998787
Q gi|254780806|r 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 1 ~~~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|..-+.|++.|..+-+|.|+. +|..|++.|++|.++|-..
T Consensus 2 m~~LkgK~~lITGas~GIG~a-----ia~~la~~G~~V~~~~~~~ 41 (250)
T PRK12825 2 MGSLSGRVALVTGAARGIGRA-----IALRLAAAGADVIVHPPSD 41 (250)
T ss_pred CCCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCC
T ss_conf 866097889993895589999-----9999998799899997988
No 495
>pfam00996 GDI GDP dissociation inhibitor.
Probab=81.87 E-value=0.75 Score=24.46 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCC
Q ss_conf 888899999999999987995999987877-680112124
Q gi|254780806|r 17 GVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGI 55 (265)
Q Consensus 17 GvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~ 55 (265)
|+|=+- +-||.+|+..|+|||-+|-... |+....|.+
T Consensus 11 GTGL~E--sILaaaLS~~GKkVLHiDrN~yYGg~~ASl~l 48 (439)
T pfam00996 11 GTGLKE--CILSGLLSVDGKKVLHIDRNDYYGGESASLSL 48 (439)
T ss_pred CCCHHH--HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCH
T ss_conf 998799--99999997369989997799877863015289
No 496
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=81.80 E-value=2 Score=21.94 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=26.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9998088988889999999999998799599998787
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~ 45 (265)
|++.++==|+||||+--++.. +..|+|+.+|=-|-
T Consensus 2 v~iitGFLGaGKTTll~~lL~--~~~~~~~avIvNEf 36 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILT--EQHGRKIAVIENEF 36 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHH--CCCCCCEEEEEECC
T ss_conf 089984888999999999984--78899779997076
No 497
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.79 E-value=1.8 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=25.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 687499998088988889999999999998-7995999987
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDL 43 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~ 43 (265)
++++.+++. ++-|+||||+.--|...+.- .| -+.||.
T Consensus 26 ~~Ge~i~Iv-G~sGsGKSTLl~ll~gl~~p~~G--~I~i~g 63 (234)
T cd03251 26 PAGETVALV-GPSGSGKSTLVNLIPRFYDVDSG--RILIDG 63 (234)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCCCCCC--EEEECC
T ss_conf 799999999-89998299999999667667886--899999
No 498
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.77 E-value=1.7 Score=22.35 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 68749999808898888999999999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA 32 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la 32 (265)
+++.+++++ +.-|+||||+.-.|+-.+.
T Consensus 31 ~~GE~vaiv-G~nGsGKSTL~k~l~Gl~~ 58 (279)
T PRK13635 31 YEGEWVAIV-GHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHHCCCC
T ss_conf 799899999-9999659999999972888
No 499
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=81.74 E-value=2.8 Score=21.09 Aligned_cols=112 Identities=11% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCCCEEEECCC--CCCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCHHHH
Q ss_conf 78203310133--3222210112331001111123-113788875335777655432-0267743100202312531001
Q gi|254780806|r 124 FSYIFLDCPPS--FNLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTV-NSALDIQGIILTMFDSRNSLSQ 199 (265)
Q Consensus 124 yD~IiiD~pp~--~~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~-~~~~~~~~iv~N~~~~~~~~~~ 199 (265)
|++-|.||++. +..+...-+..++.+|++...+ ..|+..+.... +.+.... ..++++. +|-|+.|-... +
T Consensus 49 ~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~---~~~~~~~~~~~~pii-lVgNK~DL~~~--r 122 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIY---DKILDMLGKESVPIV-LVGNKSDLHTQ--R 122 (180)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHH---HHHHHHHCCCCCCEE-EEEECCCCHHH--C
T ss_conf 99999989987010066799986355789997438878899999999---999997588888679-77653462440--7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 126899988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 200 QVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 200 ~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
.|...+.-.-|...|.+.++-+-+. ...+.|..|+++|.+.+
T Consensus 123 -----------------~V~~~e~~~~a~~~~~~f~EtSAk~g~nV~e~F~~l~~~i~k~~ 166 (180)
T cd04137 123 -----------------QVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred -----------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----------------88999999999983998999776889198999999999998863
No 500
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.69 E-value=1.7 Score=22.44 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 6874999980889888899999999
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLS 28 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA 28 (265)
++++.++++ +.-|+||||+.-.++
T Consensus 30 ~~Ge~vaii-G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 30 KKGSYTALI-GHTGSGKSTLLQHLN 53 (288)
T ss_pred CCCCEEEEE-CCCCCHHHHHHHHHH
T ss_conf 599899999-999947999999997
Done!