HHsearch alignment for GI: 254780806 and conserved domain: pfam00071
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=93.20 E-value=0.23 Score=27.46 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCCCEEEECCC--CCCCCCCHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 78203310133--3222210112331001111123-11378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPS--FNLLTMNAMAAADSILVPLQCE-FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~--~~~~~~~al~aad~viip~~p~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
T Consensus 48 ~~~~i~Dt~G~e~~~~~~~~~~~~ad~~iivfd~~~~~S~~~i~~~~~---~i~~~~~~~~pii-lvgnK~Dl~~~--~- 120 (162)
T pfam00071 48 VKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLE---EILRHADDNVPIV-LVGNKCDLEDQ--R- 120 (162)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHH---HHHHHCCCCCEEE-EEEECCCHHHC--C-
T ss_conf 999999789872046788998625765504234898899999999999---9998579886288-99752474651--8-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--89999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELI 255 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~ 255 (265)
T Consensus 121 ----------------~i~~~e~~~~a~~~~~~y~e~Sak~g~gI~~~F~~i~~~il 161 (162)
T pfam00071 121 ----------------VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161 (162)
T ss_pred ----------------CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf ----------------89999999999980997999737888299999999999967