HHsearch alignment for GI: 254780806 and conserved domain: pfam01656
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=100.00 E-value=7.6e-40 Score=252.12 Aligned_cols=204 Identities=34% Similarity=0.464 Sum_probs=144.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCC---CEEEEEECCCCHHH-CCCC-CCC
Q ss_conf 999808898888999999999999879959999878776801121246333454---11676302577121-0244-444
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKY---SSYDLLIEEKNINQ-ILIQ-TAI 83 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~---ti~~~l~~~~~l~~-~i~~-~~~ 83 (265)
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 42000148874577500012322221023332247651027820331013332222101123310011111231137888
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGL 163 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~ 163 (265)
T Consensus 81 ~~l~l~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~D~viiD~pp~~~~~~~~al~~ad~vivv~~p~~~sl~~~ 152 (212)
T pfam01656 81 DPLLLIPSNLSLANFESEL--------ILEGGEEGLIKLAYDYVIIDGAPGLGELTANALVAADILVVPIEPEGVAVLGA 152 (212)
T ss_pred CCEEEECCCHHHHHHHHHH--------HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHH
T ss_conf 8746533501566777777--------99999987666049989994799755999999983998999948976999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HHHHHHHHHHHCCC--CCCCCCCCCHHHHH
Q ss_conf 75335777655432026774310020231253100-11268999880852--01562678688987
Q gi|254780806|r 164 SQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS-QQVVSDVRKNLGGK--VYNTVIPRNVRISE 226 (265)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~-~~~~~~l~~~~~~~--v~~~~Ip~~~~i~~ 226 (265)
T Consensus 153 ~~l~~~~~~l~------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~~ 212 (212)
T pfam01656 153 QRLLELVERLG------LKILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLALSE 212 (212)
T ss_pred HHHHHHHHHCC------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 99999999859------9622999914889983663078999999978997514041168776687