HHsearch alignment for GI: 254780806 and conserved domain: pfam06564

>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=100.00  E-value=0  Score=329.75  Aligned_cols=238  Identities=19%  Similarity=0.248  Sum_probs=189.4

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf             49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r    7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL   86 (265)
Q Consensus         7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l   86 (265)
T Consensus         2 kiIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~-~g~~~~~l~~~~~~~~~~~~-~~gl   79 (244)
T pfam06564         2 AVLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHS-DGWARAELDGRPWRDAALRY-TPGL   79 (244)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC-CCHHHHHHCCCCHHHHHEEE-CCCE
T ss_conf             299996699986199999999999997799589996898742102358886434-41489987599777744452-6975


Q ss_pred             EECCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHH-HHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             00148874577500012-3222210233322476-510278203310133322221011233100111112311378887
Q gi|254780806|r   87 SIIPSTMDLLGIEMILG-GEKDRLFRLDKALSVQ-LTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLS  164 (265)
Q Consensus        87 ~iipa~~~~~~~~~~l~-~~~~~~~~l~~~l~~~-l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~  164 (265)
T Consensus        80 ~llP~g-~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~~l~~~al~aad~vLv~v~~d~~s~~~l~  158 (244)
T pfam06564        80 DLLPFG-QLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFSPLTRQLLELADVTLAVVHADANCHIRLH  158 (244)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf             897289-9747899989865443799999876421357899999979999689999999976960899688858999973


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             53357776554320267743100202312531001126899988085201562678688987773798579997999899
Q gi|254780806|r  165 QLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGS  244 (265)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a  244 (265)
T Consensus       159 ----------~~~~~--~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~-~l~~~I~rd~~l~EA~a~g~pv~~yaP~S~aA  225 (244)
T pfam06564       159 ----------QQALP--AGCHLLINDFRIGSQLQDDLYQLWLQSQRR-LLPIVVHRDEAMAEALAAKQPLGEYRPDSLAA  225 (244)
T ss_pred             ----------HCCCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCEEECCCCHHHHHHHCCCCHHHCCCCCHHH
T ss_conf             ----------23344--677488642455768999999999986087-25755079882989986799554538699899


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999986
Q gi|254780806|r  245 QAYLKLASELIQQERH  260 (265)
Q Consensus       245 ~~~~~la~el~~~~~~  260 (265)
T Consensus       226 ~dy~~LA~w~l~~~~~  241 (244)
T pfam06564       226 EEVLTLANWCLLHYSR  241 (244)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999986433