BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780806|ref|YP_003065219.1| chromosome partitioning
protein A [Candidatus Liberibacter asiaticus str. psy62]
         (265 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 265

 Score =  536 bits (1381), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60
           MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR
Sbjct: 1   MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60

Query: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120
           KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL
Sbjct: 61  KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120

Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180
           TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA
Sbjct: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180

Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240
           LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK
Sbjct: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240

Query: 241 CAGSQAYLKLASELIQQERHRKEAA 265
           CAGSQAYLKLASELIQQERHRKEAA
Sbjct: 241 CAGSQAYLKLASELIQQERHRKEAA 265


>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 44.7 bits (104), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 21/118 (17%)

Query: 7   RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-----GIELYDRK 61
           + + +A+ KGGVGK+TT +N++ AL   G+NV ++D D  G +   L      +E+ D+K
Sbjct: 96  KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK 155

Query: 62  Y----SSYDLLIE------EKNINQI----LIQTAIPNL--SIIPSTMDLLGIEMILG 103
           +     +Y + I       ++N+  I    ++Q+AI ++  +++   +D L I+M  G
Sbjct: 156 FLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPG 213


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 27.7 bits (60), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 19/134 (14%)

Query: 5   KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL------Y 58
           K+ II I    G VGKTTT   L+ AL++I +    I     G+ +  +G+ L       
Sbjct: 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI-----GSYNNHIGVPLTLARMPV 158

Query: 59  DRKYSSYDLLIEEKNINQILIQTAIPNLSII----PSTM-DLLGIEMILGGEKDRLFRLD 113
           D  +  ++L +      + L     P++++I    P+ + +  GIE I   + +    L+
Sbjct: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218

Query: 114 KALSVQLTSDFSYI 127
           K  ++ L  D S+ 
Sbjct: 219 KTGTIFLNYDDSFF 232


>gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 338

 Score = 26.6 bits (57), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 26/123 (21%)

Query: 16  GGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG--------IELYDRKYSSYDL 67
           GG GKT TA+       AI + V+  +L P G  S G G        ++L   K+S+YD+
Sbjct: 55  GGTGKTPTAL-------AIAKAVIDKNLKP-GFLSRGYGRKSRISFRVDL--EKHSAYDV 104

Query: 68  LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYI 127
             E      +L + A+   +I+ S    +G++M+L    D +   D   S  L +DFS I
Sbjct: 105 GDEP----LLLARRAV---TIVTSDRK-IGVQMLLQEGVDIIIMDDGFHSADLQADFSLI 156

Query: 128 FLD 130
            ++
Sbjct: 157 VVN 159


>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 430

 Score = 26.2 bits (56), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 18  VGKTTTAINLSTALAAIGENVLLIDLD 44
           VGK  +AI+LS     IGE + L+D D
Sbjct: 128 VGKKPSAIHLSREHFEIGEALGLMDFD 154


>gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 316

 Score = 25.8 bits (55), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 47  GNASTG-LGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86
           GN  TG   I L DR +SS   ++ EK    ++IQ+ +P +
Sbjct: 166 GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI 206


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 25.0 bits (53), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 155 CEFFALEGLSQLLETVEEVRRTVNS 179
           CEFF    LSQL E V  + R  ++
Sbjct: 514 CEFFCSSQLSQLEEHVNSLSRITHT 538


>gi|254781093|ref|YP_003065506.1| hypothetical protein CLIBASIA_04975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 225

 Score = 24.6 bits (52), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 148 SILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK 207
           S L P       + G +  + T  +V+  VN  ++ +GI         S++ +V+ D   
Sbjct: 140 SFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGI---------SITHKVIPDANH 190

Query: 208 NLGGKV 213
              GKV
Sbjct: 191 FFIGKV 196


>gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 238

 Score = 24.3 bits (51), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 164 SQLLETVEEVRRTVNSALDIQGIILTM-FDSRNSLSQQVVSDVRKNLGGKVYNTVIPR 220
           SQ +   +E+R     +L++ GI+     D+ NS+S   +++ R + GGK   T + R
Sbjct: 172 SQEVRVNDEIR-----SLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLR 224


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 23.9 bits (50), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 11  IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYD 59
           I N++  + + TT ++LS     +   V++ID+D     +  LGI + D
Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589


>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 342

 Score = 22.7 bits (47), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 66  DLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRL 112
           +L I +KNINQ+   T  P++           I   LG  KD  +R+
Sbjct: 253 ELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI 299


>gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 459

 Score = 22.3 bits (46), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 69 IEEKNINQILIQTAIPNLSIIPSTMDLL 96
          IE K I   LI+    N+SI+  TMD+L
Sbjct: 16 IERKEIADKLIK----NISIVDKTMDVL 39


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,728
Number of Sequences: 1233
Number of extensions: 5979
Number of successful extensions: 28
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 14
length of query: 265
length of database: 328,796
effective HSP length: 72
effective length of query: 193
effective length of database: 240,020
effective search space: 46323860
effective search space used: 46323860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)