BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] (265 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 536 bits (1381), Expect = e-154, Method: Compositional matrix adjust. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR Sbjct: 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60 Query: 61 KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120 KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL Sbjct: 61 KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120 Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA Sbjct: 121 TSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSA 180 Query: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK Sbjct: 181 LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLK 240 Query: 241 CAGSQAYLKLASELIQQERHRKEAA 265 CAGSQAYLKLASELIQQERHRKEAA Sbjct: 241 CAGSQAYLKLASELIQQERHRKEAA 265 >gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 44.7 bits (104), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 21/118 (17%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-----GIELYDRK 61 + + +A+ KGGVGK+TT +N++ AL G+NV ++D D G + L +E+ D+K Sbjct: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK 155 Query: 62 Y----SSYDLLIE------EKNINQI----LIQTAIPNL--SIIPSTMDLLGIEMILG 103 + +Y + I ++N+ I ++Q+AI ++ +++ +D L I+M G Sbjct: 156 FLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPG 213 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 27.7 bits (60), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 19/134 (14%) Query: 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL------Y 58 K+ II I G VGKTTT L+ AL++I + I G+ + +G+ L Sbjct: 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKKTYACI-----GSYNNHIGVPLTLARMPV 158 Query: 59 DRKYSSYDLLIEEKNINQILIQTAIPNLSII----PSTM-DLLGIEMILGGEKDRLFRLD 113 D + ++L + + L P++++I P+ + + GIE I + + L+ Sbjct: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 Query: 114 KALSVQLTSDFSYI 127 K ++ L D S+ Sbjct: 219 KTGTIFLNYDDSFF 232 >gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 338 Score = 26.6 bits (57), Expect = 0.49, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 26/123 (21%) Query: 16 GGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG--------IELYDRKYSSYDL 67 GG GKT TA+ AI + V+ +L P G S G G ++L K+S+YD+ Sbjct: 55 GGTGKTPTAL-------AIAKAVIDKNLKP-GFLSRGYGRKSRISFRVDL--EKHSAYDV 104 Query: 68 LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYI 127 E +L + A+ +I+ S +G++M+L D + D S L +DFS I Sbjct: 105 GDEP----LLLARRAV---TIVTSDRK-IGVQMLLQEGVDIIIMDDGFHSADLQADFSLI 156 Query: 128 FLD 130 ++ Sbjct: 157 VVN 159 >gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 430 Score = 26.2 bits (56), Expect = 0.61, Method: Compositional matrix adjust. Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 18 VGKTTTAINLSTALAAIGENVLLIDLD 44 VGK +AI+LS IGE + L+D D Sbjct: 128 VGKKPSAIHLSREHFEIGEALGLMDFD 154 >gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 25.8 bits (55), Expect = 0.86, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 47 GNASTG-LGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 GN TG I L DR +SS ++ EK ++IQ+ +P + Sbjct: 166 GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI 206 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 155 CEFFALEGLSQLLETVEEVRRTVNS 179 CEFF LSQL E V + R ++ Sbjct: 514 CEFFCSSQLSQLEEHVNSLSRITHT 538 >gi|254781093|ref|YP_003065506.1| hypothetical protein CLIBASIA_04975 [Candidatus Liberibacter asiaticus str. psy62] Length = 225 Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Query: 148 SILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK 207 S L P + G + + T +V+ VN ++ +GI S++ +V+ D Sbjct: 140 SFLAPCPSSGLIINGSNDTVATTSDVKDLVNKLMNQKGI---------SITHKVIPDANH 190 Query: 208 NLGGKV 213 GKV Sbjct: 191 FFIGKV 196 >gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 238 Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 164 SQLLETVEEVRRTVNSALDIQGIILTM-FDSRNSLSQQVVSDVRKNLGGKVYNTVIPR 220 SQ + +E+R +L++ GI+ D+ NS+S +++ R + GGK T + R Sbjct: 172 SQEVRVNDEIR-----SLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLR 224 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYD 59 I N++ + + TT ++LS + V++ID+D + LGI + D Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 >gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 342 Score = 22.7 bits (47), Expect = 7.7, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 22/47 (46%) Query: 66 DLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRL 112 +L I +KNINQ+ T P++ I LG KD +R+ Sbjct: 253 ELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI 299 >gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62] Length = 459 Score = 22.3 bits (46), Expect = 9.7, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%) Query: 69 IEEKNINQILIQTAIPNLSIIPSTMDLL 96 IE K I LI+ N+SI+ TMD+L Sbjct: 16 IERKEIADKLIK----NISIVDKTMDVL 39 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,728 Number of Sequences: 1233 Number of extensions: 5979 Number of successful extensions: 28 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 14 length of query: 265 length of database: 328,796 effective HSP length: 72 effective length of query: 193 effective length of database: 240,020 effective search space: 46323860 effective search space used: 46323860 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 37 (18.9 bits)