HHsearch alignment for GI: 254780807 and conserved domain: COG2264

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=97.46  E-value=0.0004  Score=44.66  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=57.8

Q ss_pred             CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEEE
Q ss_conf             23443111114677335656522755466347875000038999999999738980--9980426653312479869999
Q gi|254780807|r   70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVISA  147 (168)
Q Consensus        70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~s  147 (168)
T Consensus       161 ~~g~~vlDvGcGSGI----LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-~~~~DvIVA  235 (300)
T COG2264         161 KKGKTVLDVGCGSGI----LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-NGPFDVIVA  235 (300)
T ss_pred             CCCCEEEEECCCHHH----HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC-CCCCCEEEE
T ss_conf             589879982678159----999999819866899718889999999999976996022003456300013-686568986


Q ss_pred             CCCCCHHH-HHHHHHHHHCC
Q ss_conf             14799899-99984885206
Q gi|254780807|r  148 RALADLDT-LLEYSFPWLYQ  166 (168)
Q Consensus       148 RA~a~l~~-ll~~~~pllk~  166 (168)
T Consensus       236 NILA~vl~~La~~~~~~lkp  255 (300)
T COG2264         236 NILAEVLVELAPDIKRLLKP  255 (300)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             05278999999999987088