HHsearch alignment for GI: 254780807 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=97.46 E-value=0.0004 Score=44.66 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 23443111114677335656522755466347875000038999999999738980--9980426653312479869999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~s 147 (168)
T Consensus 161 ~~g~~vlDvGcGSGI----LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGI----LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-NGPFDVIVA 235 (300)
T ss_pred CCCCEEEEECCCHHH----HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC-CCCCCEEEE
T ss_conf 589879982678159----999999819866899718889999999999976996022003456300013-686568986
Q ss_pred CCCCCHHH-HHHHHHHHHCC
Q ss_conf 14799899-99984885206
Q gi|254780807|r 148 RALADLDT-LLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~l~~-ll~~~~pllk~ 166 (168)
T Consensus 236 NILA~vl~~La~~~~~~lkp 255 (300)
T COG2264 236 NILAEVLVELAPDIKRLLKP 255 (300)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 05278999999999987088