HHsearch alignment for GI: 254780807 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.35 E-value=3.1e-06 Score=56.81 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHH-------------CCCC-----CEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 1799989999999999999984-------------6321-----304308999998986463564310012344311111
Q gi|254780807|r 18 TYNVSRETLEKLEYFYFLFLKW-------------SKKI-----NLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLG 79 (168)
Q Consensus 18 ~~~ls~eq~~~l~~y~~ll~~~-------------N~~~-----NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiG 79 (168)
T Consensus 22 ~~~l~~~~~~~~~~~~~rr~~g~PlqYI~g~~~F~~~~f~V~~~VLIPRpET-E~Lve~~l~~~-----~~~~~~ilDlg 95 (251)
T TIGR03534 22 EKELTPEELARFEALVARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDT-EELVEAALERL-----KKGPLKVLDLG 95 (251)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEEECCEEEECCCH-HHHHHHHHHHH-----CCCCCEEEEEC
T ss_conf 8889999999999999999869968995087689868999718878648833-99999999973-----14898699955
Q ss_pred CCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHH-HHHCCCCCCEEEEC
Q ss_conf 467733565652275546634787500003899999999973898-0998042665-33124798699991
Q gi|254780807|r 80 SGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQE-APQMITTCDVISAR 148 (168)
Q Consensus 80 SGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~-~~~~~~~~d~v~sR 148 (168)
T Consensus 96 tGSG~I~i~la~~~~~~~---v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsN 161 (251)
T TIGR03534 96 TGSGAIALALAKERPDAR---VTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLP--GGKFDLIVSN 161 (251)
T ss_pred CCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCC--CCCCCEEEEC
T ss_conf 671699999999679978---99998987999999999998099826865131432156--8986689978