HHsearch alignment for GI: 254780807 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.35  E-value=3.1e-06  Score=56.81  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHH-------------CCCC-----CEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf             1799989999999999999984-------------6321-----304308999998986463564310012344311111
Q gi|254780807|r   18 TYNVSRETLEKLEYFYFLFLKW-------------SKKI-----NLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLG   79 (168)
Q Consensus        18 ~~~ls~eq~~~l~~y~~ll~~~-------------N~~~-----NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiG   79 (168)
T Consensus        22 ~~~l~~~~~~~~~~~~~rr~~g~PlqYI~g~~~F~~~~f~V~~~VLIPRpET-E~Lve~~l~~~-----~~~~~~ilDlg   95 (251)
T TIGR03534        22 EKELTPEELARFEALVARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDT-EELVEAALERL-----KKGPLKVLDLG   95 (251)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEEECCEEEECCCH-HHHHHHHHHHH-----CCCCCEEEEEC
T ss_conf             8889999999999999999869968995087689868999718878648833-99999999973-----14898699955


Q ss_pred             CCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHH-HHHCCCCCCEEEEC
Q ss_conf             467733565652275546634787500003899999999973898-0998042665-33124798699991
Q gi|254780807|r   80 SGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQE-APQMITTCDVISAR  148 (168)
Q Consensus        80 SGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~-~~~~~~~~d~v~sR  148 (168)
T Consensus        96 tGSG~I~i~la~~~~~~~---v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsN  161 (251)
T TIGR03534        96 TGSGAIALALAKERPDAR---VTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLP--GGKFDLIVSN  161 (251)
T ss_pred             CCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCC--CCCCCEEEEC
T ss_conf             671699999999679978---99998987999999999998099826865131432156--8986689978