Query gi|254780807|ref|YP_003065220.1| glucose-inhibited division protein B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 168
No_of_seqs 118 out of 2055
Neff 6.0
Searched_HMMs 39220
Date Sun May 29 18:03:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780807.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00107 gidB glucose-inhibite 100.0 0 0 319.9 16.1 157 7-167 3-162 (216)
2 COG0357 GidB Predicted S-adeno 100.0 0 0 315.3 14.7 155 10-167 5-161 (215)
3 pfam02527 GidB rRNA small subu 100.0 0 0 307.8 13.7 139 25-167 1-141 (184)
4 TIGR00138 gidB methyltransfera 100.0 0 0 297.6 9.7 136 29-167 1-146 (197)
5 PRK05134 3-demethylubiquinone- 98.8 2.1E-07 5.4E-12 63.6 11.5 137 20-167 3-144 (233)
6 TIGR01983 UbiG ubiquinone bios 98.6 1.1E-07 2.8E-12 65.3 7.0 91 72-167 85-189 (275)
7 PRK07402 precorrin-6B methylas 98.5 2.2E-06 5.6E-11 57.7 9.9 95 70-167 39-135 (196)
8 COG2242 CobL Precorrin-6B meth 98.4 3.6E-06 9.1E-11 56.5 10.2 101 62-166 24-127 (187)
9 COG2890 HemK Methylase of poly 98.4 1.9E-06 4.9E-11 58.0 8.6 119 19-148 46-183 (280)
10 COG4123 Predicted O-methyltran 98.4 1.3E-06 3.4E-11 58.9 7.3 105 60-167 31-163 (248)
11 TIGR03533 L3_gln_methyl protei 98.4 1.5E-06 3.9E-11 58.6 7.6 73 71-148 121-196 (284)
12 PRK11805 N5-glutamine S-adenos 98.4 1.8E-06 4.6E-11 58.2 7.6 73 71-148 133-208 (307)
13 PRK11036 putative metallothion 98.4 7.6E-06 1.9E-10 54.6 10.6 92 70-166 43-141 (256)
14 pfam05175 MTS Methyltransferas 98.4 1.8E-06 4.6E-11 58.2 7.3 92 71-166 31-132 (170)
15 TIGR03534 RF_mod_HemK protein- 98.4 3.1E-06 8E-11 56.8 8.5 120 18-148 22-161 (251)
16 PRK00377 cbiT cobalt-precorrin 98.3 6.7E-06 1.7E-10 54.9 9.8 96 70-167 39-138 (198)
17 PRK11873 arsM arsenite S-adeno 98.3 4.1E-06 1E-10 56.2 8.5 96 69-166 71-171 (258)
18 PRK09328 N5-glutamine S-adenos 98.3 3.7E-06 9.3E-11 56.4 8.0 119 19-148 45-183 (277)
19 PRK08287 cobalt-precorrin-6Y C 98.3 6.5E-06 1.7E-10 55.0 9.2 100 63-167 21-123 (186)
20 COG2227 UbiG 2-polyprenyl-3-me 98.3 1.3E-05 3.4E-10 53.2 10.7 133 18-166 9-153 (243)
21 PRK00216 ubiE ubiquinone/menaq 98.3 1.4E-05 3.7E-10 53.0 10.7 115 45-166 30-150 (239)
22 PRK09329 N5-glutamine S-adenos 98.3 5E-06 1.3E-10 55.7 8.0 123 16-147 40-180 (285)
23 PRK08317 hypothetical protein; 98.3 7.6E-06 1.9E-10 54.6 8.7 106 54-166 6-116 (241)
24 smart00828 PKS_MT Methyltransf 98.2 7.6E-06 1.9E-10 54.6 8.1 90 73-166 1-96 (224)
25 PRK09489 rsmC 16S ribosomal RN 98.2 4.7E-06 1.2E-10 55.8 7.0 73 71-148 196-268 (342)
26 pfam01209 Ubie_methyltran ubiE 98.2 2.1E-05 5.3E-10 52.1 9.6 127 26-166 13-145 (233)
27 cd02440 AdoMet_MTases S-adenos 98.2 1.5E-05 3.9E-10 52.8 8.7 89 74-166 1-96 (107)
28 pfam01596 Methyltransf_3 O-met 98.2 2.1E-05 5.4E-10 52.0 9.1 96 70-167 43-147 (204)
29 PRK01544 bifunctional N5-gluta 98.1 6.3E-06 1.6E-10 55.0 5.8 73 71-148 135-210 (503)
30 COG2226 UbiE Methylase involve 98.1 0.00012 3E-09 47.7 11.6 133 27-167 11-149 (238)
31 COG2813 RsmC 16S RNA G1207 met 98.1 1.5E-05 3.7E-10 52.9 6.7 71 72-147 159-230 (300)
32 TIGR00477 tehB tellurite resis 98.0 1.1E-05 2.9E-10 53.6 5.9 105 28-150 41-147 (239)
33 TIGR02469 CbiT precorrin-6Y C5 97.9 0.00011 2.7E-09 47.9 9.0 106 58-166 5-125 (135)
34 KOG1499 consensus 97.9 2.9E-05 7.4E-10 51.2 5.9 91 56-151 45-137 (346)
35 TIGR00080 pimt protein-L-isoas 97.8 6.5E-05 1.6E-09 49.2 6.4 83 68-152 79-167 (228)
36 pfam03848 TehB Tellurite resis 97.8 7.7E-05 2E-09 48.8 6.7 93 39-148 9-101 (192)
37 PRK13942 protein-L-isoaspartat 97.8 8.8E-05 2.3E-09 48.4 7.0 84 69-154 74-159 (214)
38 pfam01135 PCMT Protein-L-isoas 97.8 0.00011 2.9E-09 47.8 7.3 85 69-155 71-157 (205)
39 PRK12335 tellurite resistance 97.8 1.7E-05 4.3E-10 52.6 2.8 114 21-151 83-196 (289)
40 COG4122 Predicted O-methyltran 97.7 0.00047 1.2E-08 44.3 9.5 96 69-166 57-158 (219)
41 pfam06325 PrmA Ribosomal prote 97.7 9.3E-05 2.4E-09 48.3 5.4 77 71-153 160-236 (294)
42 PRK00517 prmA ribosomal protei 97.6 0.00024 6.1E-09 45.9 7.1 90 70-166 161-253 (298)
43 pfam08242 Methyltransf_12 Meth 97.6 0.00034 8.7E-09 45.0 7.3 88 76-166 1-94 (98)
44 pfam08241 Methyltransf_11 Meth 97.5 0.00055 1.4E-08 43.9 7.4 84 76-166 1-89 (95)
45 PRK13944 protein-L-isoaspartat 97.5 0.00048 1.2E-08 44.2 6.9 83 70-155 71-157 (205)
46 PRK00312 pcm protein-L-isoaspa 97.5 0.00047 1.2E-08 44.2 6.8 81 69-154 76-158 (213)
47 COG2264 PrmA Ribosomal protein 97.5 0.0004 1E-08 44.7 6.3 92 70-166 161-255 (300)
48 KOG2904 consensus 97.4 0.00077 2E-08 43.0 7.6 94 51-148 129-229 (328)
49 pfam02353 CMAS Cyclopropane-fa 97.4 0.0011 2.8E-08 42.1 8.3 91 69-166 60-158 (273)
50 PRK11207 tellurite resistance 97.4 0.00055 1.4E-08 43.8 6.7 78 67-151 27-105 (198)
51 PRK13943 protein-L-isoaspartat 97.4 0.00073 1.9E-08 43.1 7.1 79 69-149 73-152 (317)
52 COG2518 Pcm Protein-L-isoaspar 97.4 0.00069 1.8E-08 43.3 6.7 83 70-158 71-157 (209)
53 TIGR00406 prmA ribosomal prote 97.3 0.00026 6.6E-09 45.7 4.2 90 73-166 198-292 (330)
54 pfam02475 Met_10 Met-10+ like- 97.3 0.0035 8.9E-08 39.2 9.8 98 66-167 95-194 (199)
55 PRK01683 trans-aconitate 2-met 97.3 0.0014 3.6E-08 41.5 7.6 89 56-153 17-105 (252)
56 PTZ00098 phosphoethanolamine N 97.3 0.0013 3.3E-08 41.7 7.3 92 70-166 51-148 (263)
57 KOG1270 consensus 97.2 0.001 2.6E-08 42.3 6.3 87 72-166 90-187 (282)
58 pfam08003 Methyltransf_9 Prote 97.2 0.0025 6.4E-08 40.0 8.2 138 17-162 60-208 (315)
59 PRK07580 Mg-protoporphyrin IX 97.2 0.00067 1.7E-08 43.4 5.2 70 71-148 63-134 (230)
60 pfam10294 Methyltransf_16 Puta 97.2 0.0016 4.2E-08 41.1 6.9 92 71-166 44-146 (171)
61 COG2230 Cfa Cyclopropane fatty 97.0 0.0028 7.2E-08 39.7 6.9 101 56-167 61-169 (283)
62 PRK05785 hypothetical protein; 96.9 0.0091 2.3E-07 36.8 8.5 102 50-165 31-136 (225)
63 TIGR02021 BchM-ChlM magnesium 96.8 0.0018 4.7E-08 40.8 4.5 79 70-161 53-135 (224)
64 PRK10258 biotin biosynthesis p 96.8 0.012 3E-07 36.1 8.5 86 72-166 43-132 (251)
65 PRK06202 hypothetical protein; 96.7 0.0027 6.9E-08 39.8 4.5 78 71-150 61-139 (233)
66 KOG1500 consensus 96.5 0.006 1.5E-07 37.9 5.5 76 72-153 178-255 (517)
67 COG2263 Predicted RNA methylas 96.5 0.03 7.7E-07 33.8 9.0 98 40-146 16-113 (198)
68 KOG4300 consensus 96.5 0.017 4.5E-07 35.2 7.5 123 35-165 32-173 (252)
69 TIGR02072 BioC biotin biosynth 96.5 0.0015 3.9E-08 41.3 2.1 94 54-150 14-119 (272)
70 pfam09445 Methyltransf_15 RNA 96.1 0.033 8.3E-07 33.6 7.2 70 73-147 2-77 (165)
71 PRK10909 rsmD 16S rRNA m(2)G96 96.1 0.024 6.2E-07 34.3 6.4 86 56-148 40-127 (198)
72 KOG1271 consensus 96.0 0.026 6.6E-07 34.2 6.5 114 31-148 24-143 (227)
73 TIGR01934 MenG_MenH_UbiE ubiqu 96.0 0.074 1.9E-06 31.6 8.5 118 50-167 22-154 (242)
74 COG2519 GCD14 tRNA(1-methylade 95.9 0.086 2.2E-06 31.2 8.6 98 61-161 82-183 (256)
75 COG4076 Predicted RNA methylas 95.9 0.0065 1.6E-07 37.7 2.7 69 73-148 34-103 (252)
76 PRK11705 cyclopropane fatty ac 95.8 0.015 3.9E-07 35.5 4.6 89 70-167 166-260 (383)
77 PRK00121 trmB tRNA (guanine-N( 95.8 0.037 9.3E-07 33.3 6.3 72 72-146 55-130 (229)
78 TIGR00537 hemK_rel_arch methyl 95.7 0.017 4.4E-07 35.2 4.4 81 60-146 6-91 (183)
79 PRK03522 rumB 23S rRNA methylu 95.7 0.065 1.7E-06 31.9 7.3 72 71-147 233-306 (375)
80 pfam09243 Rsm22 Mitochondrial 95.6 0.032 8.1E-07 33.7 5.5 79 72-153 35-116 (275)
81 pfam02390 Methyltransf_4 Putat 95.6 0.046 1.2E-06 32.7 6.3 61 72-135 21-83 (199)
82 pfam03602 Cons_hypoth95 Conser 95.6 0.046 1.2E-06 32.7 6.2 89 55-148 28-120 (181)
83 COG2520 Predicted methyltransf 95.6 0.13 3.2E-06 30.2 8.4 97 67-167 184-282 (341)
84 TIGR02081 metW methionine bios 95.5 0.005 1.3E-07 38.3 1.2 89 61-158 3-104 (205)
85 PRK13168 rumA 23S rRNA 5-methy 95.4 0.14 3.5E-06 30.0 8.1 72 71-147 294-370 (440)
86 TIGR00536 hemK_fam methyltrans 95.3 0.076 1.9E-06 31.5 6.6 73 73-148 128-206 (311)
87 PRK10901 16S rRNA methyltransf 95.2 0.11 2.9E-06 30.5 7.1 76 71-149 245-322 (428)
88 KOG1501 consensus 94.8 0.027 6.9E-07 34.1 3.1 73 73-150 68-143 (636)
89 KOG2793 consensus 94.7 0.081 2.1E-06 31.3 5.4 47 71-122 86-132 (248)
90 pfam05971 Methyltransf_10 Prot 94.6 0.15 3.8E-06 29.8 6.4 101 44-147 37-146 (254)
91 COG0220 Predicted S-adenosylme 94.3 0.15 3.8E-06 29.8 5.9 62 73-137 50-112 (227)
92 COG3897 Predicted methyltransf 93.8 0.094 2.4E-06 30.9 4.2 71 71-148 79-149 (218)
93 pfam07021 MetW Methionine bios 93.7 0.15 3.7E-06 29.8 5.0 74 64-147 6-81 (193)
94 PRK05031 tRNA (uracil-5-)-meth 93.5 0.38 9.8E-06 27.4 6.9 59 72-135 208-267 (363)
95 pfam05891 Hydroxy-O-Methy Puta 93.4 0.55 1.4E-05 26.5 7.5 90 49-148 31-129 (217)
96 pfam01189 Nol1_Nop2_Fmu NOL1/N 93.2 0.56 1.4E-05 26.5 7.2 77 71-149 84-163 (277)
97 pfam05958 tRNA_U5-meth_tr tRNA 92.4 0.67 1.7E-05 26.0 6.7 59 72-135 198-257 (353)
98 COG2265 TrmA SAM-dependent met 92.3 0.74 1.9E-05 25.8 6.9 71 72-147 294-368 (432)
99 KOG1540 consensus 92.3 1 2.6E-05 25.0 10.4 130 27-166 64-206 (296)
100 COG0742 N6-adenine-specific me 92.1 0.98 2.5E-05 25.1 7.3 73 71-147 43-120 (187)
101 TIGR03587 Pse_Me-ase pseudamin 92.0 0.9 2.3E-05 25.3 7.0 73 69-150 41-114 (204)
102 pfam08704 GCD14 tRNA methyltra 91.8 1.1 2.9E-05 24.7 8.4 90 69-160 100-194 (309)
103 PTZ00338 dimethyladenosine tra 91.8 1 2.6E-05 25.0 7.1 76 69-155 36-113 (296)
104 pfam00398 RrnaAD Ribosomal RNA 91.5 0.66 1.7E-05 26.0 5.9 60 70-135 29-88 (258)
105 pfam05219 DREV DREV methyltran 91.2 0.75 1.9E-05 25.7 5.9 80 73-166 96-180 (265)
106 TIGR00452 TIGR00452 methyltran 91.0 1.3 3.3E-05 24.4 7.0 139 21-166 70-220 (316)
107 COG0030 KsgA Dimethyladenosine 91.0 0.94 2.4E-05 25.2 6.3 59 71-135 30-88 (259)
108 pfam01861 DUF43 Protein of unk 90.9 1 2.6E-05 25.0 6.4 74 71-148 44-119 (243)
109 KOG3010 consensus 90.9 0.11 2.8E-06 30.6 1.4 95 68-167 30-129 (261)
110 PRK06922 hypothetical protein; 90.9 0.87 2.2E-05 25.4 6.0 74 71-147 420-495 (679)
111 pfam01170 UPF0020 Putative RNA 90.7 1.5 3.7E-05 24.1 7.8 76 69-147 26-103 (171)
112 smart00650 rADc Ribosomal RNA 90.3 0.91 2.3E-05 25.2 5.7 59 70-135 12-71 (169)
113 PRK11727 putative SAM-dependen 89.9 0.57 1.4E-05 26.4 4.4 93 53-148 95-199 (326)
114 PRK11933 yebU rRNA (cytosine-C 89.5 1.8 4.7E-05 23.5 7.8 78 70-149 112-191 (471)
115 KOG1661 consensus 88.8 0.63 1.6E-05 26.2 3.9 84 69-152 80-173 (237)
116 PRK00274 ksgA dimethyladenosin 88.6 0.89 2.3E-05 25.3 4.6 56 70-135 38-93 (267)
117 KOG3420 consensus 88.1 0.75 1.9E-05 25.7 4.0 87 56-146 29-119 (185)
118 pfam07091 FmrO Ribosomal RNA m 88.0 1.4 3.6E-05 24.2 5.3 81 60-145 89-172 (248)
119 KOG2651 consensus 87.8 0.58 1.5E-05 26.4 3.2 91 37-134 117-212 (476)
120 COG5459 Predicted rRNA methyla 87.7 0.42 1.1E-05 27.2 2.4 48 72-125 114-161 (484)
121 COG0144 Sun tRNA and rRNA cyto 85.6 3.2 8.2E-05 22.1 7.4 77 71-148 156-236 (355)
122 TIGR00091 TIGR00091 tRNA (guan 84.7 1.3 3.4E-05 24.3 3.7 64 71-137 19-93 (216)
123 COG1867 TRM1 N2,N2-dimethylgua 83.4 4 0.0001 21.5 7.8 92 72-166 53-146 (380)
124 COG4106 Tam Trans-aconitate me 83.0 2.5 6.3E-05 22.8 4.5 85 59-152 19-103 (257)
125 KOG3201 consensus 82.9 1.4 3.6E-05 24.1 3.3 74 72-148 30-110 (201)
126 KOG3191 consensus 82.6 4.3 0.00011 21.3 7.6 87 58-148 27-117 (209)
127 PRK04457 spermidine synthase; 82.5 4.4 0.00011 21.3 8.3 102 42-153 40-148 (262)
128 TIGR00978 asd_EA aspartate-sem 82.2 0.35 8.9E-06 27.7 -0.0 49 78-133 182-234 (358)
129 COG1064 AdhP Zn-dependent alco 81.5 4.7 0.00012 21.1 6.5 86 71-166 166-251 (339)
130 COG1568 Predicted methyltransf 80.6 4.4 0.00011 21.3 5.1 73 72-148 153-228 (354)
131 pfam01564 Spermine_synth Sperm 79.8 5.4 0.00014 20.8 7.6 96 52-153 58-160 (240)
132 PRK04338 N(2),N(2)-dimethylgua 78.7 5.9 0.00015 20.6 9.1 93 71-166 51-145 (376)
133 KOG0820 consensus 77.2 6.5 0.00017 20.3 5.5 85 56-147 37-129 (315)
134 pfam03721 UDPG_MGDP_dh_N UDP-g 76.8 2 5E-05 23.3 2.4 35 81-116 7-41 (185)
135 KOG1663 consensus 76.7 6.8 0.00017 20.2 7.5 93 71-165 73-174 (237)
136 PRK04040 adenylate kinase; Pro 76.2 5.7 0.00014 20.7 4.6 78 31-112 34-125 (189)
137 COG2019 AdkA Archaeal adenylat 75.1 1.9 4.8E-05 23.4 1.9 79 28-113 32-125 (189)
138 TIGR00446 nop2p NOL1/NOP2/sun 75.0 5.9 0.00015 20.6 4.4 74 71-146 77-155 (284)
139 pfam04445 DUF548 Protein of un 73.5 8.2 0.00021 19.7 6.2 68 74-146 78-156 (235)
140 cd05296 GH4_P_beta_glucosidase 72.9 8.5 0.00022 19.6 7.2 61 75-135 3-73 (419)
141 PRK11088 rrmA 23S rRNA methylt 72.3 8.8 0.00022 19.6 5.8 78 71-153 85-162 (272)
142 KOG2920 consensus 72.1 1.5 3.7E-05 24.1 0.8 35 70-108 115-149 (282)
143 COG3963 Phospholipid N-methylt 70.5 6.7 0.00017 20.2 3.9 71 71-147 48-123 (194)
144 PRK00258 aroE shikimate 5-dehy 68.8 11 0.00027 19.1 6.4 82 59-147 109-190 (275)
145 cd05197 GH4_glycoside_hydrolas 68.7 11 0.00027 19.1 6.1 68 75-146 3-79 (425)
146 PRK11064 wecC UDP-N-acetyl-D-m 66.3 3.9 1E-04 21.6 1.9 17 21-37 180-196 (415)
147 cd01065 NAD_bind_Shikimate_DH 66.1 12 0.0003 18.8 6.0 60 58-119 5-64 (155)
148 TIGR02821 fghA_ester_D S-formy 65.9 2 5.1E-05 23.3 0.4 10 75-84 94-103 (279)
149 PRK09496 trkA potassium transp 65.1 13 0.00032 18.7 5.3 61 81-148 239-304 (455)
150 KOG3115 consensus 64.8 12 0.00031 18.7 4.2 58 73-133 62-127 (249)
151 TIGR03026 NDP-sugDHase nucleot 64.7 4.7 0.00012 21.1 2.1 17 21-37 175-191 (411)
152 PRK00811 spermidine synthase; 64.7 13 0.00032 18.6 8.8 78 69-150 76-161 (283)
153 pfam00891 Methyltransf_2 O-met 64.2 5.2 0.00013 20.9 2.2 66 71-150 101-168 (239)
154 PRK03612 spermidine synthase; 63.8 13 0.00034 18.5 8.4 80 69-152 291-380 (516)
155 PRK01581 speE spermidine synth 63.6 13 0.00034 18.5 7.4 107 40-149 96-223 (363)
156 KOG2187 consensus 63.6 11 0.00029 18.9 3.9 60 71-135 383-443 (534)
157 TIGR00031 UDP-GALP_mutase UDP- 63.3 3.5 9E-05 21.8 1.3 28 80-108 7-35 (390)
158 COG3129 Predicted SAM-dependen 61.5 5.6 0.00014 20.7 2.0 89 52-147 57-159 (292)
159 TIGR01444 fkbM_fam methyltrans 61.3 15 0.00038 18.3 4.8 51 74-125 1-51 (142)
160 TIGR02734 crtI_fam phytoene de 61.0 4.6 0.00012 21.2 1.5 10 81-90 502-511 (526)
161 cd05297 GH4_alpha_glucosidase_ 61.0 15 0.00038 18.2 7.0 68 75-146 3-79 (423)
162 PRK10742 putative methyltransf 58.3 17 0.00042 18.0 6.2 68 74-146 91-169 (250)
163 cd06808 PLPDE_III Type III Pyr 58.0 17 0.00043 17.9 4.9 11 75-85 184-194 (211)
164 pfam06016 Reovirus_L2 Reovirus 56.8 5.5 0.00014 20.7 1.3 33 71-108 822-854 (1289)
165 COG4976 Predicted methyltransf 55.0 4.9 0.00013 21.0 0.8 83 73-164 127-215 (287)
166 KOG2052 consensus 54.4 6.4 0.00016 20.4 1.3 31 75-110 192-222 (513)
167 pfam00070 Pyr_redox Pyridine n 54.2 16 0.0004 18.1 3.3 29 81-110 6-34 (82)
168 KOG4058 consensus 54.1 20 0.0005 17.5 5.5 88 59-149 61-173 (199)
169 pfam07757 AdoMet_MTase Predict 53.9 7.7 0.0002 19.9 1.7 70 30-114 16-96 (112)
170 pfam08010 Phage_30_3 Bacteriop 53.9 5.3 0.00013 20.8 0.8 20 76-95 1-20 (146)
171 KOG3987 consensus 52.7 4.8 0.00012 21.1 0.5 76 71-159 112-192 (288)
172 COG1486 CelF Alpha-galactosida 51.8 21 0.00055 17.3 7.6 70 74-147 5-83 (442)
173 PRK10310 galactitol-specific P 51.8 21 0.00055 17.3 3.9 41 112-152 21-61 (94)
174 pfam02056 Glyco_hydro_4 Family 51.4 22 0.00055 17.3 6.9 68 75-146 2-78 (183)
175 KOG2915 consensus 51.3 22 0.00056 17.3 7.5 103 61-166 93-201 (314)
176 cd05566 PTS_IIB_galactitol PTS 50.1 23 0.00058 17.2 4.1 43 110-152 17-59 (89)
177 KOG0821 consensus 49.3 17 0.00044 17.8 2.9 58 72-133 51-108 (326)
178 KOG0622 consensus 49.2 24 0.0006 17.1 4.9 63 17-86 186-258 (448)
179 KOG1541 consensus 47.9 25 0.00063 17.0 5.0 68 71-147 50-118 (270)
180 pfam05185 PRMT5 PRMT5 arginine 47.9 25 0.00063 17.0 9.5 89 74-166 189-289 (447)
181 smart00467 GS GS motif. Aa app 45.5 7.7 0.0002 19.9 0.6 11 78-88 12-22 (30)
182 PRK07201 short chain dehydroge 43.9 29 0.00073 16.6 6.4 96 53-150 354-462 (663)
183 COG3041 Uncharacterized protei 43.4 10 0.00027 19.1 1.0 57 25-83 24-89 (91)
184 pfam03059 NAS Nicotianamine sy 43.3 29 0.00075 16.5 6.6 77 73-151 123-203 (277)
185 pfam08515 TGF_beta_GS Transfor 42.6 9.5 0.00024 19.4 0.7 14 75-88 10-23 (29)
186 KOG3101 consensus 41.3 8 0.0002 19.8 0.1 11 74-84 94-104 (283)
187 COG1004 Ugd Predicted UDP-gluc 41.2 19 0.00049 17.6 2.1 28 26-53 177-204 (414)
188 pfam02005 TRM N2,N2-dimethylgu 40.4 32 0.00083 16.3 9.2 94 71-166 49-145 (375)
189 TIGR01200 TIGR01200 Porphyromo 40.3 5.8 0.00015 20.6 -0.7 16 82-97 207-222 (300)
190 pfam06080 DUF938 Protein of un 39.2 34 0.00086 16.2 5.0 87 57-148 12-106 (201)
191 KOG2361 consensus 37.9 36 0.00091 16.0 5.2 92 74-166 74-175 (264)
192 TIGR01984 UbiH 2-polyprenyl-6- 37.7 19 0.00049 17.6 1.7 28 80-107 5-36 (425)
193 TIGR01989 COQ6 Ubiquinone bios 37.0 25 0.00065 16.9 2.2 36 80-115 6-47 (481)
194 KOG3178 consensus 36.9 15 0.0004 18.1 1.0 106 22-128 110-272 (342)
195 TIGR01459 HAD-SF-IIA-hyp4 HAD- 36.7 26 0.00067 16.8 2.2 43 82-124 24-66 (243)
196 KOG1709 consensus 36.5 37 0.00096 15.9 7.5 111 51-166 82-198 (271)
197 KOG0822 consensus 36.1 36 0.00092 16.0 2.8 91 74-166 370-470 (649)
198 COG0677 WecC UDP-N-acetyl-D-ma 36.0 22 0.00056 17.2 1.7 32 82-114 17-48 (436)
199 TIGR02651 RNase_Z ribonuclease 36.0 12 0.00031 18.7 0.4 38 83-122 70-109 (327)
200 COG0421 SpeE Spermidine syntha 35.5 39 0.00099 15.8 7.9 94 70-166 75-182 (282)
201 PRK00536 speE spermidine synth 33.5 42 0.0011 15.6 5.2 79 68-152 69-150 (262)
202 PRK05249 soluble pyridine nucl 33.1 28 0.00071 16.7 1.8 51 58-111 162-212 (465)
203 KOG3048 consensus 31.3 18 0.00046 17.8 0.6 39 71-121 82-120 (153)
204 pfam05148 Methyltransf_8 Hypot 31.2 46 0.0012 15.4 4.3 108 24-166 31-145 (214)
205 PRK10222 L-ascorbate-specific 30.9 47 0.0012 15.4 2.9 33 115-147 8-40 (85)
206 TIGR01316 gltA glutamate synth 30.1 17 0.00045 17.8 0.4 35 72-109 142-176 (462)
207 TIGR00507 aroE shikimate 5-deh 29.7 49 0.0012 15.2 6.1 95 45-146 97-195 (286)
208 TIGR00755 ksgA dimethyladenosi 28.9 50 0.0013 15.2 3.7 59 70-134 28-89 (277)
209 pfam02384 N6_Mtase N-6 DNA Met 28.7 51 0.0013 15.1 5.4 87 57-147 32-131 (312)
210 PRK01203 prefoldin subunit alp 28.6 43 0.0011 15.6 2.2 95 23-123 3-101 (130)
211 PRK09754 phenylpropionate diox 28.5 45 0.0012 15.4 2.3 65 57-124 129-202 (400)
212 PRK07251 pyridine nucleotide-d 28.3 31 0.00078 16.4 1.4 49 72-123 157-213 (438)
213 KOG2539 consensus 27.4 34 0.00087 16.2 1.5 46 72-121 201-246 (491)
214 TIGR02752 MenG_heptapren 2-hep 27.3 54 0.0014 15.0 6.8 87 69-157 43-131 (231)
215 pfam01728 FtsJ FtsJ-like methy 27.1 40 0.001 15.8 1.8 68 67-149 17-93 (176)
216 cd05212 NAD_bind_m-THF_DH_Cycl 26.9 55 0.0014 15.0 5.8 39 70-110 26-64 (140)
217 TIGR00872 gnd_rel 6-phosphoglu 26.8 26 0.00065 16.9 0.8 29 58-86 99-128 (341)
218 KOG1122 consensus 26.8 55 0.0014 14.9 5.8 73 72-146 242-317 (460)
219 TIGR00479 rumA 23S rRNA (uraci 26.4 56 0.0014 14.9 6.2 73 69-146 292-369 (434)
220 cd06831 PLPDE_III_ODC_like_AZI 26.0 57 0.0015 14.9 4.8 64 17-87 143-216 (394)
221 pfam04816 DUF633 Family of unk 25.5 58 0.0015 14.8 6.4 21 104-124 98-118 (204)
222 PRK11188 rrmJ 23S rRNA methylt 25.5 33 0.00084 16.3 1.1 70 67-150 47-126 (209)
223 TIGR00438 rrmJ ribosomal RNA l 25.5 30 0.00077 16.4 0.9 92 64-167 25-143 (192)
224 cd06841 PLPDE_III_MccE_like Ty 25.3 59 0.0015 14.8 6.0 67 17-86 141-215 (379)
225 PRK05653 fabG 3-ketoacyl-(acyl 25.3 59 0.0015 14.8 6.1 85 72-166 133-228 (246)
226 pfam08123 DOT1 Histone methyla 25.1 59 0.0015 14.8 4.2 85 69-156 40-137 (205)
227 KOG1710 consensus 25.0 60 0.0015 14.7 3.0 43 1-43 206-259 (396)
228 COG1023 Gnd Predicted 6-phosph 23.1 42 0.0011 15.6 1.3 31 58-88 97-128 (300)
229 PRK07454 short chain dehydroge 23.1 65 0.0017 14.5 5.5 82 71-165 133-222 (241)
230 KOG4782 consensus 21.2 48 0.0012 15.3 1.3 40 77-125 59-98 (108)
231 PRK08328 hypothetical protein; 20.9 72 0.0018 14.3 4.6 79 72-153 27-129 (230)
232 COG0654 UbiH 2-polyprenyl-6-me 20.6 55 0.0014 14.9 1.5 27 80-107 8-34 (387)
233 PRK06940 short chain dehydroge 20.5 73 0.0019 14.2 4.1 18 147-164 231-248 (277)
234 pfam11590 DNAPolymera_Pol DNA 20.5 31 0.0008 16.4 0.2 12 75-86 12-23 (41)
235 TIGR03439 methyl_EasF probable 20.4 74 0.0019 14.2 5.5 80 49-134 57-143 (319)
236 cd05567 PTS_IIB_mannitol PTS_I 20.1 75 0.0019 14.2 4.3 39 106-147 13-51 (87)
No 1
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=100.00 E-value=0 Score=319.94 Aligned_cols=157 Identities=35% Similarity=0.537 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCC--CCCCEEECCCCCH
Q ss_conf 88851366664179998999999999999998463213043089999989864635643100123--4431111146773
Q gi|254780807|r 7 NSILRANYLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPY--PSIWIDLGSGGGF 84 (168)
Q Consensus 7 n~~~~~~~l~~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~--~~~ilDiGSGaGf 84 (168)
-+.+......-++++|++|+++|..|++++.+||+++||||+++.+++|.|||+||++++++++. +.+++||||||||
T Consensus 3 ~~~l~~~~~~l~~~l~~~~~~~l~~y~~ll~~~N~~~NLt~~~~~~~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGf 82 (216)
T PRK00107 3 LEKLQEGLAELGIELSDEQLEQLEAYVELLVKWNKKYNLTAIRDPEEMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGF 82 (216)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 89999999985999999999999999999998658364485699899999988857889873376658779970799994
Q ss_pred HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 35656522755466347875000038999999999738980-99804266533124798699991479989999984885
Q gi|254780807|r 85 PGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPW 163 (168)
Q Consensus 85 PGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pl 163 (168)
||||+||++|+.+ ++|+||++||++||++++.+|+|+| +++++|+|++.. ..+||+|||||||+++++++|+.|+
T Consensus 83 PGiplAI~~p~~~---~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~itsRAva~l~~l~~~~~~~ 158 (216)
T PRK00107 83 PGIPLAIARPDLQ---VTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAVASLSDLVELCLPL 158 (216)
T ss_pred HHHHHHHHCCCCC---EEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCC-CCCCCEEEEEHHHCHHHHHHHHHHH
T ss_conf 2678999778772---99973876999999999997699987998635440465-6786689860540699999999975
Q ss_pred HCCC
Q ss_conf 2067
Q gi|254780807|r 164 LYQK 167 (168)
Q Consensus 164 lk~k 167 (168)
+++.
T Consensus 159 l~~~ 162 (216)
T PRK00107 159 LKPG 162 (216)
T ss_pred CCCC
T ss_conf 4889
No 2
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=315.31 Aligned_cols=155 Identities=37% Similarity=0.537 Sum_probs=139.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCC-CCCCEEECCCCCHHHHH
Q ss_conf 51366664179998999999999999998463213043089999989864635643100123-44311111467733565
Q gi|254780807|r 10 LRANYLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPY-PSIWIDLGSGGGFPGII 88 (168)
Q Consensus 10 ~~~~~l~~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~-~~~ilDiGSGaGfPGi~ 88 (168)
+....-..++.++++|.+++..|+++|.+||+++||||.++.+++|.||++||++++++.+. +.+|+||||||||||||
T Consensus 5 l~~~~~~~~~~~~~~~~~~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGip 84 (215)
T COG0357 5 LEAGLDGLGLSVTEEQLEKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIP 84 (215)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHH
T ss_conf 88678750577559999999999999998617507777798789999999998646650256688799857999973176
Q ss_pred HHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6522755466347875000038999999999738980-998042665331247986999914799899999848852067
Q gi|254780807|r 89 TSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 89 laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~k 167 (168)
+||++|+.+ |||+||+.||++||++++.+|+|+| +++++|+|++.+...-||+|||||||+++++.+||.||+|..
T Consensus 85 LAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L~~l~e~~~pllk~~ 161 (215)
T COG0357 85 LAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASLNVLLELCLPLLKVG 161 (215)
T ss_pred HHHHCCCCC---EEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 888566881---89971675079999999998599974986312766014466575898542025688999999843468
No 3
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=100.00 E-value=0 Score=307.80 Aligned_cols=139 Identities=35% Similarity=0.522 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCC-CCCEEECCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999999999999984632130430899999898646356431001234-4311111467733565652275546634787
Q gi|254780807|r 25 TLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYP-SIWIDLGSGGGFPGIITSIQLSSIEGGLVNL 103 (168)
Q Consensus 25 q~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~-~~ilDiGSGaGfPGi~laI~~p~~~~~~v~L 103 (168)
|+++|+.|+++|.+||+++||||+++.+++|.|||+||++++++++.. .+++|+|||||||||||||++|+.+ ++|
T Consensus 1 Qlekl~~y~~lL~~~N~~~NLt~~~~~~~i~~rHi~DSl~~~~~~~~~~~~ilDiGSGaGfPGi~LAI~~p~~~---~~L 77 (184)
T pfam02527 1 QLEKLELYVQLLLEWNKRYNLTSITEPNELLERHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIAFPDKK---LTL 77 (184)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCE---EEE
T ss_conf 97999999999998557431146799899999999999998774266798688347988846799999677855---999
Q ss_pred EHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5000038999999999738980-998042665331247986999914799899999848852067
Q gi|254780807|r 104 IESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 104 ves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~k 167 (168)
+||++||++||++++++|+|+| ++++.|+|+... ..+||+||||||||++++++|+.|++++.
T Consensus 78 vEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~-~~~~D~v~aRA~a~l~~ll~~~~~~l~~~ 141 (184)
T pfam02527 78 LESLLKKINFLEELKKELNLENVTIVHARAEEYQH-EEQYDVITSRAVASLNELTEWALPLLKPG 141 (184)
T ss_pred EECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC-CCCCCEEEECHHCCHHHHHHHHHHHCCCC
T ss_conf 92828999999999998599976999560441464-46787899810057999999999863889
No 4
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=100.00 E-value=0 Score=297.60 Aligned_cols=136 Identities=36% Similarity=0.568 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCC------CCCCEEECCCCCHHHHHHH-HCCCCCCCCEE
Q ss_conf 9999999998463213043089999989864635643100123------4431111146773356565-22755466347
Q gi|254780807|r 29 LEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPY------PSIWIDLGSGGGFPGIITS-IQLSSIEGGLV 101 (168)
Q Consensus 29 l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~------~~~ilDiGSGaGfPGi~la-I~~p~~~~~~v 101 (168)
+..|+++|.+||+++||||.++.+++|++|++||+.++++... +.+++|||||||||||||| |++|+++ +
T Consensus 1 ~~~y~~~l~~~N~~~NLT~~~~~~~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~~p~~~---~ 77 (197)
T TIGR00138 1 LLQYLELLQKWNKRYNLTSIKTPEEIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACILRPELK---L 77 (197)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCE---E
T ss_conf 9578899998416645754167167877640222433000024566663312677347897145653422057642---8
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH--HHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 875000038999999999738980-9980426653--31247986999914799899999848852067
Q gi|254780807|r 102 NLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA--PQMITTCDVISARALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 102 ~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~--~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~k 167 (168)
||+||+.|||+||++++.+|+|+| ++++.|+|+. .++..+||+||||||++++.+++|+.||++..
T Consensus 78 ~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E~~g~~~~~~~~D~~~~RAl~~l~~~~e~~~~L~~~~ 146 (197)
T TIGR00138 78 TLLESNKKKVNFLKEVKKELGLNNVEILNGRVEDLGSKQHEEQFDVITSRALVSLNELLELTLPLLKVG 146 (197)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 984277406899999999838998242001125505545333578789803102468888663037889
No 5
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=98.76 E-value=2.1e-07 Score=63.57 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCC
Q ss_conf 99989999999999999984632130430899999898646356431001234431111146773356565227554663
Q gi|254780807|r 20 NVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGG 99 (168)
Q Consensus 20 ~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~ 99 (168)
.++++.+++|..+.+.=+..|-.+..-. ....+...-|.+.+. .-++.+++|||.|+|+-.-++|=. +.
T Consensus 3 tvd~~Ei~~F~~la~~WWd~~g~~~~Lh--~~N~~R~~~i~~~~~----~l~G~~ILDVGCGgG~lse~LAr~-----Ga 71 (233)
T PRK05134 3 NVDPAEIAKFSALAARWWDPNGEFKPLH--RINPLRLNYIREHAG----GLFGKRVLDVGCGGGILSESMARL-----GA 71 (233)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHHHHHHHHHCC----CCCCCEEEEECCCCCHHHHHHHHC-----CC
T ss_conf 7999999999988998479999960788--836999999997514----668998999755897112899967-----99
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH-HCCCCCCEEEEC----CCCCHHHHHHHHHHHHCCC
Q ss_conf 4787500003899999999973898099804266533-124798699991----4799899999848852067
Q gi|254780807|r 100 LVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP-QMITTCDVISAR----ALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 100 ~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~-~~~~~~d~v~sR----A~a~l~~ll~~~~pllk~k 167 (168)
.|+-||.+.+-+..-+.-+++.+++....++.+|++. ...++||+|+|= -|..++.++.-+.++||+-
T Consensus 72 ~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l~~~~~~~FDvV~~~EVlEHV~d~~~~l~~~~rlLKPG 144 (233)
T PRK05134 72 TVTGIDASEENIEVARLHALESGLKIDYRQITAEELAAEHPGQFDVVTCMEMLEHVPDPASFIRACAKLVKPG 144 (233)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 7999879989999999985644345116751476654305786347744214775389999999999973899
No 6
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=98.63 E-value=1.1e-07 Score=65.26 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=77.0
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCE-EEEEHHHHHHHHHHHHHHHHHCCC------CEEEECHHHHHHHC---CCC
Q ss_conf 44311111467733565652275546634-787500003899999999973898------09980426653312---479
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGL-VNLIESKNKKASFLRYVVQKTAAR------GKVFACRIQEAPQM---ITT 141 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~-v~Lves~~KK~~FL~~~~~~L~L~------~~vi~~r~e~~~~~---~~~ 141 (168)
+.+|+|||+|||+=.-||| ..+.. |+.||...+=+..-+.=+.+-+++ +.=.+..+|++.+. ...
T Consensus 85 G~~vLDVGCGGGlLsE~lA-----R~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~ 159 (275)
T TIGR01983 85 GLRVLDVGCGGGLLSEPLA-----RLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKS 159 (275)
T ss_pred CCEEEEECCCHHHHHHHHH-----HCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9779984278578889997-----55884257752117799999988873340233111145444307887305578415
Q ss_pred CCEEEEC----CCCCHHHHHHHHHHHHCCC
Q ss_conf 8699991----4799899999848852067
Q gi|254780807|r 142 CDVISAR----ALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 142 ~d~v~sR----A~a~l~~ll~~~~pllk~k 167 (168)
||+|||= =|..+..++.-|..+||+.
T Consensus 160 FD~V~~mEvlEHV~dp~~f~~~c~~llkPg 189 (275)
T TIGR01983 160 FDVVTCMEVLEHVPDPQAFIKACAQLLKPG 189 (275)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 733764320000278889999999850899
No 7
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.46 E-value=2.2e-06 Score=57.68 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=77.9
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH-HHHCCCCCCEEEE
Q ss_conf 23443111114677335656522755466347875000038999999999738980-998042665-3312479869999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE-APQMITTCDVISA 147 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~-~~~~~~~~d~v~s 147 (168)
..+..++|||+|.|-=++-.|...|+- +|+.+|++...+...++-.++.+++| +++++++-+ +.......|.|+-
T Consensus 39 ~~~~~vwDIGaGtGsVsiEaa~~~~~g---~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~p~pD~vFI 115 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAALLCPKG---RVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRICI 115 (196)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEE
T ss_conf 999999994788779999999878998---89999768889999999899729998799972636668408999999998
Q ss_pred CCCCCHHHHHHHHHHHHCCC
Q ss_conf 14799899999848852067
Q gi|254780807|r 148 RALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 148 RA~a~l~~ll~~~~pllk~k 167 (168)
=.=.++..+++++...|++.
T Consensus 116 GGg~~l~~il~~~~~~L~pg 135 (196)
T PRK07402 116 EGGRPIKEILQAVWQYLKPG 135 (196)
T ss_pred CCCCCHHHHHHHHHHHCCCC
T ss_conf 48968899999999867999
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.43 E-value=3.6e-06 Score=56.50 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=82.8
Q ss_pred HHHHHHCCC-CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH-HHC
Q ss_conf 564310012-3443111114677335656522755466347875000038999999999738980-9980426653-312
Q gi|254780807|r 62 SLRVFQLHP-YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA-PQM 138 (168)
Q Consensus 62 Sl~~~~~~~-~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~-~~~ 138 (168)
.+.+..+-+ ++..++|||+|.|==++=+|.+.|..+ ++.+|+.++++.-.+.-.++++.+| +++.+.+-+. ++.
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~---v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGR---VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCC
T ss_conf 9889860889999899957886689999997398855---9999258889999999999849996799954645763699
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 4798699991479989999984885206
Q gi|254780807|r 139 ITTCDVISARALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 139 ~~~~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168)
..+|.|+-=.=.+++.+++.+...|++
T Consensus 101 -~~~daiFIGGg~~i~~ile~~~~~l~~ 127 (187)
T COG2242 101 -PSPDAIFIGGGGNIEEILEAAWERLKP 127 (187)
T ss_pred -CCCCEEEECCCCCHHHHHHHHHHHCCC
T ss_conf -999999987987778999999997186
No 9
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.9e-06 Score=58.03 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-----------------CCHHHHHHHHHHHHHHHHHCCCCCC-CCEEECC
Q ss_conf 799989999999999999984632130430-----------------8999998986463564310012344-3111114
Q gi|254780807|r 19 YNVSRETLEKLEYFYFLFLKWSKKINLVSS-----------------STVEDFWIRHVEDSLRVFQLHPYPS-IWIDLGS 80 (168)
Q Consensus 19 ~~ls~eq~~~l~~y~~ll~~~N~~~NLts~-----------------~~~~~~~~rHi~DSl~~~~~~~~~~-~ilDiGS 80 (168)
..+++++.+++........++--..-+++. +...+.+..+++ ....... +++|+||
T Consensus 46 ~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l------~~~~~~~~~ilDlGT 119 (280)
T COG2890 46 AELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAAL------ALLLQLDKRILDLGT 119 (280)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECCEEEECCCCCCCCCCHHHHHHHHH------HHHHCCCCCEEEECC
T ss_conf 44786789999999999976998768102365616345347986688976799999999------751115891899658
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 677335656522755466347875000038999999999738980-99804266533124798699991
Q gi|254780807|r 81 GGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 81 GaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
|.|..++-+|-..|+.. |+.+|-+..-+.+-+.-+..+++.+ .++.+ .-+.+...+||+|+|=
T Consensus 120 GSG~iai~la~~~~~~~---V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~--dlf~~~~~~fDlIVsN 183 (280)
T COG2890 120 GSGAIAIALAKEGPDAE---VIAVDISPDALALARENAERNGLVRVLVVQS--DLFEPLRGKFDLIVSN 183 (280)
T ss_pred CCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCEEEEEC--CHHHCCCCCCCEEEEC
T ss_conf 83199999996189887---9999899999999999999828974798740--0333468885779968
No 10
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.39 E-value=1.3e-06 Score=58.95 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=77.3
Q ss_pred HHHHHHHHCCC--CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHH
Q ss_conf 63564310012--34431111146773356565227554663478750000389999999997389--809980426653
Q gi|254780807|r 60 EDSLRVFQLHP--YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEA 135 (168)
Q Consensus 60 ~DSl~~~~~~~--~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~ 135 (168)
.|++.+..+.+ ..++++|+|||+|.=|+-+|=-.++. .+++||..+.-+.+.++-++..++ +.++++..+.++
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred CHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCC---CEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHH
T ss_conf 089999765265668769883689468999974558778---07999817999999999886186134016764308876
Q ss_pred HHC--CCCCCEEEEC----------------------CCCCHHHHHHHHHHHHCCC
Q ss_conf 312--4798699991----------------------4799899999848852067
Q gi|254780807|r 136 PQM--ITTCDVISAR----------------------ALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 136 ~~~--~~~~d~v~sR----------------------A~a~l~~ll~~~~pllk~k 167 (168)
... ..+||+|+|- .-..+..++..+..+||+.
T Consensus 108 ~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 108 LKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred HHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 54236565478995989878753348674665566322288999999999974679
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.39 E-value=1.5e-06 Score=58.61 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHH-HHHCCCCCCEEEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980--998042665-3312479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQE-APQMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~-~~~~~~~~d~v~s 147 (168)
...+++|+|||.|.=||-+|-.+|+.+ |+.+|.+.+-+.--++-+.++++.+ .++++..-+ ++ ..+||+|+|
T Consensus 121 ~~~~iLDlGtGSG~Iai~la~~~p~~~---v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~~~--~~~fDlIVS 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE---VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCC--CCCCCEEEE
T ss_conf 777155521680799999998789987---999989999999999999860854336888351433145--777787997
Q ss_pred C
Q ss_conf 1
Q gi|254780807|r 148 R 148 (168)
Q Consensus 148 R 148 (168)
-
T Consensus 196 N 196 (284)
T TIGR03533 196 N 196 (284)
T ss_pred C
T ss_conf 7
No 12
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.37 E-value=1.8e-06 Score=58.22 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHH-HHHCCCCCCEEEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980--998042665-3312479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQE-APQMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~-~~~~~~~~d~v~s 147 (168)
...+++|+|||.|.=||-+|..+|+.+ |+++|-+.+-...-++-+..+++.+ .++++..-+ ++ ..+||+|+|
T Consensus 133 ~~~rilDlGtGSG~Iaisla~~~p~~~---v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l~--~~~fDlIvS 207 (307)
T PRK11805 133 QPTRILDLCTGSGCIAIACAYAFPDAE---VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRRYDLIVS 207 (307)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC--CCCCCEEEE
T ss_conf 887277742782799999998789988---999858999999999999983887738998040221268--875077996
Q ss_pred C
Q ss_conf 1
Q gi|254780807|r 148 R 148 (168)
Q Consensus 148 R 148 (168)
-
T Consensus 208 N 208 (307)
T PRK11805 208 N 208 (307)
T ss_pred C
T ss_conf 7
No 13
>PRK11036 putative metallothionein SmtA; Provisional
Probab=98.36 E-value=7.6e-06 Score=54.60 Aligned_cols=92 Identities=21% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHC-CCCCCEEE
Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653312-47986999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQM-ITTCDVIS 146 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~-~~~~d~v~ 146 (168)
+.+.+|+|+|.|.|.-.++||-. +..||++|.+..-..-.+.-+.+.++. .+.+++.++++++. ..+||+|+
T Consensus 43 ~~plrVLDvG~G~G~~a~~lA~~-----Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVl 117 (256)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKMAEL-----GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (256)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC-----CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEE
T ss_conf 99983998379877989999977-----9979986699999999999988649661279885689988542368866786
Q ss_pred ECCCCCH----HHHHHHHHHHHCC
Q ss_conf 9147998----9999984885206
Q gi|254780807|r 147 ARALADL----DTLLEYSFPWLYQ 166 (168)
Q Consensus 147 sRA~a~l----~~ll~~~~pllk~ 166 (168)
+-||-.+ ...++-...+||+
T Consensus 118 cHaVLE~v~dP~~~l~~l~~~lkP 141 (256)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRP 141 (256)
T ss_pred EEHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 513677237899999999997589
No 14
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.36 E-value=1.8e-06 Score=58.22 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC-
Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533124798699991-
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR- 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR- 148 (168)
...+++|+|+|.|.=|+.+|-..|+.+ ++++|.+..-+...++-++..++++ +++.+.+.+.. ...+||+|+|=
T Consensus 31 ~~g~vLDlGcG~G~i~~~la~~~p~~~---v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~-~~~~fD~IvsNP 106 (170)
T pfam05175 31 LGGKVLDLGCGYGVLGAALAKRSPDLE---VTMVDINARALESARANLAANGLENGEVFWSDLYSAV-EPGKFDLIISNP 106 (170)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCE---EEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCEEEEEECC
T ss_conf 899499977648298999999789867---9851544999999999999809984899974466657-788660899897
Q ss_pred ---CCC-----CHHHHHHHHHHHHCC
Q ss_conf ---479-----989999984885206
Q gi|254780807|r 149 ---ALA-----DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 149 ---A~a-----~l~~ll~~~~pllk~ 166 (168)
+-. -...+++-+...|++
T Consensus 107 P~h~g~~~~~~~~~~~i~~A~~~L~p 132 (170)
T pfam05175 107 PFHAGKATDYDVAQRFIAGAARHLKP 132 (170)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 72114203289999999999996164
No 15
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=98.35 E-value=3.1e-06 Score=56.81 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHH-------------CCCC-----CEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 1799989999999999999984-------------6321-----304308999998986463564310012344311111
Q gi|254780807|r 18 TYNVSRETLEKLEYFYFLFLKW-------------SKKI-----NLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLG 79 (168)
Q Consensus 18 ~~~ls~eq~~~l~~y~~ll~~~-------------N~~~-----NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiG 79 (168)
...+++++.+++..+.+...+- +..+ =|+-+-+. +.+...+++-+ .+.+.+++|+|
T Consensus 22 ~~~l~~~~~~~~~~~~~rr~~g~PlqYI~g~~~F~~~~f~V~~~VLIPRpET-E~Lve~~l~~~-----~~~~~~ilDlg 95 (251)
T TIGR03534 22 EKELTPEELARFEALVARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDT-EELVEAALERL-----KKGPLKVLDLG 95 (251)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEEECCEEEECCCH-HHHHHHHHHHH-----CCCCCEEEEEC
T ss_conf 8889999999999999999869968995087689868999718878648833-99999999973-----14898699955
Q ss_pred CCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHH-HHHCCCCCCEEEEC
Q ss_conf 467733565652275546634787500003899999999973898-0998042665-33124798699991
Q gi|254780807|r 80 SGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQE-APQMITTCDVISAR 148 (168)
Q Consensus 80 SGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~-~~~~~~~~d~v~sR 148 (168)
||.|.=||-+|-.+|+.+ ++++|-+.+-+..-++-+..++++ ..++++..-+ ++ ..+||+|+|-
T Consensus 96 tGSG~I~i~la~~~~~~~---v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsN 161 (251)
T TIGR03534 96 TGSGAIALALAKERPDAR---VTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLP--GGKFDLIVSN 161 (251)
T ss_pred CCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCC--CCCCCEEEEC
T ss_conf 671699999999679978---99998987999999999998099826865131432156--8986689978
No 16
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.33 E-value=6.7e-06 Score=54.91 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHH-HHHCCCCCCEEE
Q ss_conf 234431111146773356565227554663478750000389999999997389-80-998042665-331247986999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQE-APQMITTCDVIS 146 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~-~~~~~~~~d~v~ 146 (168)
..+..++|||+|.|.=+|=.|...+.. .+|+.+|.+..++...++-+++.++ ++ +++++++-+ +......+|.|+
T Consensus 39 ~~~~~vwDIGaGsGsvsiEaa~~~~~~--~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~~l~p~pD~vF 116 (198)
T PRK00377 39 FKGGKLVDVGCGTGSVSVEAALIVGEG--GKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLPKLNPKSDRYF 116 (198)
T ss_pred CCCCEEEEECCCEEHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCCEEE
T ss_conf 998999991770329999999966978--759999678889999999999809998859995254887720899889899
Q ss_pred E-CCCCCHHHHHHHHHHHHCCC
Q ss_conf 9-14799899999848852067
Q gi|254780807|r 147 A-RALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 147 s-RA~a~l~~ll~~~~pllk~k 167 (168)
- =.-+.+..+++++...|+..
T Consensus 117 IGG~~g~l~~il~~~~~~L~~g 138 (198)
T PRK00377 117 IGGGGEELPEIIQAALEKIGKG 138 (198)
T ss_pred EECCCCCHHHHHHHHHHHCCCC
T ss_conf 9788777899999999857999
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.32 E-value=4.1e-06 Score=56.16 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168)
++.+.+|+|+|||+|+-.++.|-.... .++|+-||-+.-.+.--++-+++.++.| +...+.+|+++-....||+|+|
T Consensus 71 l~pGe~VLDLGcG~G~d~~~aA~~VG~--~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D~SfDvViS 148 (258)
T PRK11873 71 LKPGETVLDLGSGAGFDCFLAARRVGP--TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADGSVDVIIS 148 (258)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 799998999478877759999998699--977999859999999999999975997559999555313689883519988
Q ss_pred CCCCC----HHHHHHHHHHHHCC
Q ss_conf 14799----89999984885206
Q gi|254780807|r 148 RALAD----LDTLLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~----l~~ll~~~~pllk~ 166 (168)
..+-. ....+.-..+.||+
T Consensus 149 ncVlnl~pDk~~vl~E~~RVLKP 171 (258)
T PRK11873 149 NCVINLSPDKERVFREAFRVLKP 171 (258)
T ss_pred CCEEECCCCHHHHHHHHHHHCCC
T ss_conf 24676079879999999996288
No 18
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.31 E-value=3.7e-06 Score=56.42 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-------------CCCC-----CEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 799989999999999999984-------------6321-----3043089999989864635643100123443111114
Q gi|254780807|r 19 YNVSRETLEKLEYFYFLFLKW-------------SKKI-----NLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGS 80 (168)
Q Consensus 19 ~~ls~eq~~~l~~y~~ll~~~-------------N~~~-----NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGS 80 (168)
..+++++.+++..+.+.-.+- +..+ =|+-+-+.|.++ ..++.. +...+.+++|+||
T Consensus 45 ~~l~~~~~~~~~~li~RR~~gePlqYI~G~~~F~g~~f~V~~~VLIPRPETE~LV-e~~l~~-----~~~~~~~ilDlgt 118 (277)
T PRK09328 45 TQLTDEQQQQLEALLTRRRQGEPIAYLTGEREFWSLPLFVSPATLIPRPDTECLV-EQALAR-----LPEQPCRILDLGT 118 (277)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEEEEECCCEEEECCCHHHHH-HHHHHH-----CCCCCCEEEEECC
T ss_conf 8999999999999999998699789983821565258987798364088179999-999996-----4537881899545
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHH-HHHCCCCCCEEEEC
Q ss_conf 67733565652275546634787500003899999999973898-0998042665-33124798699991
Q gi|254780807|r 81 GGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQE-APQMITTCDVISAR 148 (168)
Q Consensus 81 GaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~-~~~~~~~~d~v~sR 148 (168)
|.|.=||-||-.+|+.+ ++++|-+.+-...-++-+++++++ +.++.+..-+ ++ ..+||+|+|-
T Consensus 119 GSGcI~isLa~~~p~~~---v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~~--~~~fDlIVSN 183 (277)
T PRK09328 119 GTGAIALALASERPDCE---VTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSALS--GQQFAMIVSN 183 (277)
T ss_pred CHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCC--CCCCCEEEEC
T ss_conf 56999999998677989---99964899999999999998098869999447521137--8777889978
No 19
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.31 E-value=6.5e-06 Score=54.98 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=78.3
Q ss_pred HHHHHCC-CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCC
Q ss_conf 6431001-23443111114677335656522755466347875000038999999999738980-998042665331247
Q gi|254780807|r 63 LRVFQLH-PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMIT 140 (168)
Q Consensus 63 l~~~~~~-~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~ 140 (168)
+.+.+.- ..+..++|||+|.|-=+|-.|...|+.+ |+.||.+...+.+.++-+++++++| +++++.+-+.- ..
T Consensus 21 i~LskL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~---V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap~~l--~~ 95 (186)
T PRK08287 21 LSLSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQ---VTAIERNPAALRLIKENRQRFGCGNIDIIPGEAPITL--TG 95 (186)
T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHC--CC
T ss_conf 999971999999999957887789999999789988---9999379899999999899729998799937781103--57
Q ss_pred CCCEEEECCC-CCHHHHHHHHHHHHCCC
Q ss_conf 9869999147-99899999848852067
Q gi|254780807|r 141 TCDVISARAL-ADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 141 ~~d~v~sRA~-a~l~~ll~~~~pllk~k 167 (168)
++|.|+-=.= +.+..+++++...|+..
T Consensus 96 ~pD~vFIGGsgg~l~~il~~~~~~L~~g 123 (186)
T PRK08287 96 KADAIFMGGSGGHLTAIIDWALGHLHPG 123 (186)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 8984999747898899999999757999
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.30 E-value=1.3e-05 Score=53.16 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=91.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH--------HHCCCCCCCCEEECCCCCHHHHHH
Q ss_conf 179998999999999999998463213043089999989864635643--------100123443111114677335656
Q gi|254780807|r 18 TYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRV--------FQLHPYPSIWIDLGSGGGFPGIIT 89 (168)
Q Consensus 18 ~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~--------~~~~~~~~~ilDiGSGaGfPGi~l 89 (168)
..+++..+.++++.....-+.++ .+-- ..|.+.++++ ..+.-.+.+++|||.|+|.=..|+
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~--g~f~---------~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~m 77 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPE--GEFK---------PLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPL 77 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC--CCEE---------EEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 30478788777999886306877--8634---------533405412213255442014777770887458832864999
Q ss_pred HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC----CCCCHHHHHHHHHHHHC
Q ss_conf 52275546634787500003899999999973898099804266533124798699991----47998999998488520
Q gi|254780807|r 90 SIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR----ALADLDTLLEYSFPWLY 165 (168)
Q Consensus 90 aI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR----A~a~l~~ll~~~~pllk 165 (168)
|=. +..||.+|-+++-+..-+.=..+-++++.-.+..+|++....++||+|++= -|..+..++.-+..++|
T Consensus 78 Ar~-----Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvk 152 (243)
T COG2227 78 ARL-----GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVK 152 (243)
T ss_pred HHC-----CCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 977-----994697438767789998754424632252233299997248974489773587716999999999998629
Q ss_pred C
Q ss_conf 6
Q gi|254780807|r 166 Q 166 (168)
Q Consensus 166 ~ 166 (168)
+
T Consensus 153 P 153 (243)
T COG2227 153 P 153 (243)
T ss_pred C
T ss_conf 9
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.29 E-value=1.4e-05 Score=53.00 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=84.8
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-
Q ss_conf 0430899999898646356431001234431111146773356565227554663478750000389999999997389-
Q gi|254780807|r 45 LVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA- 123 (168)
Q Consensus 45 Lts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L- 123 (168)
+.|. ..+..|.+..++.+.+ ..+.+|+|+|+|.|.-...++=..+. ..+|+.+|.+..-...-++=....++
T Consensus 30 ~~S~-G~~~~Wr~~~v~~l~~----~~g~~vLDvgcGTG~~~~~l~~~~~~--~~~v~g~D~S~~ML~~A~~k~~~~~~~ 102 (239)
T PRK00216 30 LLSF-GLHRVWRRKTIKWLGV----RPGDKVLDLACGTGDLAIALAKAVGE--TGEVVGLDFSEGMLAVGREKLLDKGLS 102 (239)
T ss_pred HHCC-CHHHHHHHHHHHHCCC----CCCCEEEEECCCCCHHHHHHHHHCCC--CCEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 7507-5199999999986278----99998988457763879999997299--767999919889999999999973898
Q ss_pred -CCEEEECHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHHHHHCC
Q ss_conf -809980426653312479869999----1479989999984885206
Q gi|254780807|r 124 -RGKVFACRIQEAPQMITTCDVISA----RALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 124 -~~~vi~~r~e~~~~~~~~~d~v~s----RA~a~l~~ll~~~~pllk~ 166 (168)
+.+.+++.+|+++-..+.||.|++ |-|.++...+.-..+.||+
T Consensus 103 ~~i~~~~~da~~lpf~d~sfD~v~~~f~l~~~~d~~~~l~E~~RVLkP 150 (239)
T PRK00216 103 GNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKP 150 (239)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCC
T ss_conf 885079823556888766676500261567148679999999987664
No 22
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.28 E-value=5e-06 Score=55.66 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHH-------------HCCCCC-----EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 64179998999999999999998-------------463213-----043089999989864635643100123443111
Q gi|254780807|r 16 LNTYNVSRETLEKLEYFYFLFLK-------------WSKKIN-----LVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWID 77 (168)
Q Consensus 16 ~~~~~ls~eq~~~l~~y~~ll~~-------------~N~~~N-----Lts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilD 77 (168)
+.+..++.++.+++..+.+.-.+ |+..+- |+=+- ..+.+..++++.+ .-.+....++|
T Consensus 40 L~~~~l~~~~~~~~~~~i~RR~~gePl~YI~G~~~F~g~~f~V~~~VLIPRp-ETE~LVe~~l~~~---~~~~~~~~~lD 115 (285)
T PRK09329 40 LHDLVLSEEELMTYWKRLQKRGQRCPTAYIHGSVHFLGLELQVDPRVLIPRQ-ETEILVEKIIGYL---QSHKEIQTFYD 115 (285)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCCEECCC-HHHHHHHHHHHHH---HHCCCCCEEEE
T ss_conf 7438999999999999999998799499982704544957886898420596-0999999999998---61877777888
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 1146773356565227554663478750000389999999997389809980426653312479869999
Q gi|254780807|r 78 LGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 78 iGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
+|||.|.=||-||--+|+.+ ++.+|-+.+-+.--++-+..+++++.++++..-+ ....+||+|+|
T Consensus 116 lGtGSG~I~isla~~~p~~~---v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~--~~~~~~DlIvS 180 (285)
T PRK09329 116 VCCGSGCIGLAIKKHCPHVH---VVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFA--PFSRPADAFVC 180 (285)
T ss_pred ECCCHHHHHHHHHHHCCCCE---EEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH--HHCCCCCEEEE
T ss_conf 45417999999998589865---8803376999999999999729947999763003--33476788998
No 23
>PRK08317 hypothetical protein; Provisional
Probab=98.26 E-value=7.6e-06 Score=54.60 Aligned_cols=106 Identities=14% Similarity=0.033 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCC-CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 9898646356431001234431111146773356565227-554663478750000389999999997389809980426
Q gi|254780807|r 54 FWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQL-SSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRI 132 (168)
Q Consensus 54 ~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~ 132 (168)
.|.+.++|-|.+ ..+.+|+|+|+|.|.-...||=.. |+ .+|+.+|.+..-+...++.....+.+++.+.+.+
T Consensus 6 ~~r~~~l~~L~l----~pG~~vLDiGcG~G~~~~~la~~~g~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~ 78 (241)
T PRK08317 6 RYRARTFELLAV----QPGERVLDVGCGPGNDLRELADRVGPE---GRVVGIDRSEAMLALARERAAGLLSNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHHCCC----CCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 999999973699----997999996641749999999974999---7899996988999999999862289649995546
Q ss_pred HHHHHCCCCCCEEEECCCC----CHHHHHHHHHHHHCC
Q ss_conf 6533124798699991479----989999984885206
Q gi|254780807|r 133 QEAPQMITTCDVISARALA----DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 133 e~~~~~~~~~d~v~sRA~a----~l~~ll~~~~pllk~ 166 (168)
++++-..+.||.|+|+.+- .+...+.-..+.||+
T Consensus 79 ~~lp~~d~sfD~v~~~~~l~h~~d~~~~l~e~~RvLkP 116 (241)
T PRK08317 79 DGLPFPDESFDAVRSDRVLQHLEDPRRALAEMARVLRP 116 (241)
T ss_pred HHCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 43589888704562211576225899999999998188
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.23 E-value=7.6e-06 Score=54.58 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEEECCC
Q ss_conf 43111114677335656522755466347875000038999999999738980--9980426653312479869999147
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVISARAL 150 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168)
++|+|||+|.|.+.+-+|=-+|+.+ |+.+|-+..-+..-++-+++.++.+ .+.++.++..+ +...||+|+|..+
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~---v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lp-f~d~FD~V~s~ev 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ---LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FPDTYDLVFGFEV 76 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCC-CCCCCCEEEHHHH
T ss_conf 9089983668888999999779988---99997999999999999997299865147852110399-9998356768535
Q ss_pred ----CCHHHHHHHHHHHHCC
Q ss_conf ----9989999984885206
Q gi|254780807|r 151 ----ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 151 ----a~l~~ll~~~~pllk~ 166 (168)
.....++.=..+.||+
T Consensus 77 l~Hi~D~~~~l~ei~RvLKP 96 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKD 96 (224)
T ss_pred HHCCCCHHHHHHHHHHHCCC
T ss_conf 76539999999999987179
No 25
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.23 E-value=4.7e-06 Score=55.81 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533124798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
..++++|+|+|+|+=|+.++-.+|+.+ |+++|.+..-+..-+.-.+..+++++++.+.+... ..++||.|+|-
T Consensus 196 ~~g~VLDlGCG~Gvi~~~la~~~p~~~---v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~~--v~~~fD~IvsN 268 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLAQHSPKIR---LTLCDVSAPAVEASRATLAANGLEGEVFASNVFSE--IKGRFDMIISN 268 (342)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCEEEEC
T ss_conf 488478606781799999998699976---99996889999999998998098868997564456--55678989968
No 26
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=98.18 E-value=2.1e-05 Score=52.07 Aligned_cols=127 Identities=16% Similarity=0.132 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHH-CCCCCCCCEEEEE
Q ss_conf 999999999999846321304308999998986463564310012344311111467733565652-2755466347875
Q gi|254780807|r 26 LEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSI-QLSSIEGGLVNLI 104 (168)
Q Consensus 26 ~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI-~~p~~~~~~v~Lv 104 (168)
.+++...|+++- ++.|. ..+..|.+-+++.+.+ .++.+++|+|+|.|...+.++= ..|.- .++.+
T Consensus 13 F~~Ia~~YD~~N------~~~S~-G~~~~WR~~~v~~~~~----~~g~~vLDl~cGTG~~~~~l~~~~~~~~---~v~gv 78 (233)
T pfam01209 13 FSSVASKYDLMN------DVISF-GIHRLWKDFTMKCMGV----KRGNKFLDVAGGTGDWTFGLSDSAGSSG---KVVGL 78 (233)
T ss_pred HHHHHHHHHHHH------HHHCC-CHHHHHHHHHHHHCCC----CCCCEEEEECCCCCHHHHHHHHHHCCCC---EEEEE
T ss_conf 986365887888------78607-3499999999986189----9999899825405889999999849997---49999
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHHHHHCC
Q ss_conf 0000389999999997389-809980426653312479869999----1479989999984885206
Q gi|254780807|r 105 ESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQMITTCDVISA----RALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 105 es~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~~~~~~d~v~s----RA~a~l~~ll~~~~pllk~ 166 (168)
|.+..-..--+.-.+..+. +.+.+.+.+|+++-..+.||.|++ |-|.++...++-..+.||+
T Consensus 79 D~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~fglrn~~d~~~al~E~~RVLKP 145 (233)
T pfam01209 79 DINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKP 145 (233)
T ss_pred ECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 6999999999999985699983699821666886665657314210121258889999999987278
No 27
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.17 E-value=1.5e-05 Score=52.82 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH-CCCCCCEEEECCCC
Q ss_conf 3111114677335656522755466347875000038999999999738980-998042665331-24798699991479
Q gi|254780807|r 74 IWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ-MITTCDVISARALA 151 (168)
Q Consensus 74 ~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~-~~~~~d~v~sRA~a 151 (168)
+++|+|+|.|.....++- ++. ..++.+|.++.-+.+.++.....+.++ +++++.+++... ..++||+|++..+-
T Consensus 1 rVLDiGcG~G~~~~~l~~-~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPG---ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CEEEEECCCCHHHHHHHH-CCC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCE
T ss_conf 999998887999999995-689---8899998988899999998753278864671488678863205753199991750
Q ss_pred -----CHHHHHHHHHHHHCC
Q ss_conf -----989999984885206
Q gi|254780807|r 152 -----DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 152 -----~l~~ll~~~~pllk~ 166 (168)
....+++-....||+
T Consensus 77 ~~~~~~~~~~l~~~~~~Lkp 96 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKP 96 (107)
T ss_pred ECCCCCHHHHHHHHHHHCCC
T ss_conf 10651899999999987485
No 28
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=98.15 E-value=2.1e-05 Score=52.03 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=78.6
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHH-HHHC-----CCC
Q ss_conf 2344311111467733565652275546634787500003899999999973898--0998042665-3312-----479
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQE-APQM-----ITT 141 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~-~~~~-----~~~ 141 (168)
.+.++++.||||.|+-++-+|-..|+ ++.++-+|...+.+..-++..++.++. .+++.+.+.+ +++. ..+
T Consensus 43 ~~ak~iLEiGT~~GySal~lA~~l~~--~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~ 120 (204)
T pfam01596 43 VGAKRTLEIGVFTGYSLLATALALPE--DGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGE 120 (204)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCC--CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCC
T ss_conf 59878999834325999999984899--9689999804899999999999779874479998749999999984477776
Q ss_pred CCEEEECCCCC-HHHHHHHHHHHHCCC
Q ss_conf 86999914799-899999848852067
Q gi|254780807|r 142 CDVISARALAD-LDTLLEYSFPWLYQK 167 (168)
Q Consensus 142 ~d~v~sRA~a~-l~~ll~~~~pllk~k 167 (168)
||+|+--|-.. ....++++.++|++.
T Consensus 121 fD~vFiDadK~~Y~~y~e~~~~lL~~g 147 (204)
T pfam01596 121 FDFAFVDADKSSYPNYYERLLELVKVG 147 (204)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 438998188877799999999863698
No 29
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.12 E-value=6.3e-06 Score=55.05 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=59.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHH-HHHHHCCCCCCEEEE
Q ss_conf 344311111467733565652275546634787500003899999999973898--09980426-653312479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRI-QEAPQMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~-e~~~~~~~~~d~v~s 147 (168)
+..+++|+|||.|.=||-||-.+|+.+ ++.+|-+.+-..--+.-+.++++. +..+++.. +.+. ..+||+|+|
T Consensus 135 ~~~~ILDLGTGSGcIaISLa~e~p~a~---v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l~--~~kFDlIVS 209 (503)
T PRK01544 135 KFLNILELGTGSGCIAISLLCELPNAN---VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIG--KQKFDFIVS 209 (503)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCC--CCCCCEEEE
T ss_conf 577278846667999999998678998---999989899999999999980882017999655310158--887247983
Q ss_pred C
Q ss_conf 1
Q gi|254780807|r 148 R 148 (168)
Q Consensus 148 R 148 (168)
-
T Consensus 210 N 210 (503)
T PRK01544 210 N 210 (503)
T ss_pred C
T ss_conf 8
No 30
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.07 E-value=0.00012 Score=47.71 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHCCCCC-EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEH
Q ss_conf 999999999998463213-0430899999898646356431001234431111146773356565227554663478750
Q gi|254780807|r 27 EKLEYFYFLFLKWSKKIN-LVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIE 105 (168)
Q Consensus 27 ~~l~~y~~ll~~~N~~~N-Lts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lve 105 (168)
+....+.+-+..+=..+| +.|. .....|.+..++.+..- .+.+++|+|+|.|==.+-++=..+ ..+|+++|
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~-g~~~~Wr~~~i~~~~~~----~g~~vLDva~GTGd~a~~~~k~~g---~g~v~~~D 82 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSF-GLHRLWRRALISLLGIK----PGDKVLDVACGTGDMALLLAKSVG---TGEVVGLD 82 (238)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHCCC----CCCEEEEECCCCCHHHHHHHHHCC---CCEEEEEE
T ss_conf 88999987657788754212037-40399999999860789----998799966873199999999658---84499997
Q ss_pred HHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHHHHHCCC
Q ss_conf 0003899999999973898-09980426653312479869999----14799899999848852067
Q gi|254780807|r 106 SKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISA----RALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 106 s~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~s----RA~a~l~~ll~~~~pllk~k 167 (168)
.+..-.+--++-..+.+.. .+.+.+.+|++|=....||.+|+ |.|...++.+.-..+-||+.
T Consensus 83 ~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 83 ISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999999874324766327997056549888876588986512352787899999998762687
No 31
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.5e-05 Score=52.94 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=59.4
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 443111114677335656522755466347875000038999999999738980-9980426653312479869999
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168)
..+++|+|+|.|.=|+.+|=..|+.+ +|++|-+..-+..-+.-.+..++++ .++.+..-+... .+||.|+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~---vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~--~kfd~Iis 230 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAK---LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE--GKFDLIIS 230 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--CCCCEEEE
T ss_conf 99688707884299999998689872---89982669999998876997398763799812446654--40068984
No 32
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=98.04 E-value=1.1e-05 Score=53.61 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHH
Q ss_conf 99999999998463213043089999989864635643100123443111114677335656522755466347875000
Q gi|254780807|r 28 KLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESK 107 (168)
Q Consensus 28 ~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~ 107 (168)
+|..|++-=-=+.+|+|+|+. .-.|.|..+++ .+++++|+|.|-|==++=||.. +--|+.+|.+
T Consensus 41 ~L~f~~~kedYF~kKy~~T~~-------Hs~v~eAvk~v----~PcKtLDLGCGqGrNsLyLsl~-----GYDV~awD~n 104 (239)
T TIGR00477 41 QLEFYCKKEDYFSKKYELTAT-------HSEVLEAVKVV----KPCKTLDLGCGQGRNSLYLSLA-----GYDVDAWDHN 104 (239)
T ss_pred EEEEEEEECCCCCCHHHCCHH-------HHHHHHHHHCC----CCCCEEECCCCCCHHHHHHHHH-----CCCCEEECCC
T ss_conf 110066303220000100103-------47777555023----7986532688885378999761-----6841012168
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECHHHHH--HHCCCCCCEEEECCC
Q ss_conf 0389999999997389809980426653--312479869999147
Q gi|254780807|r 108 NKKASFLRYVVQKTAARGKVFACRIQEA--PQMITTCDVISARAL 150 (168)
Q Consensus 108 ~KK~~FL~~~~~~L~L~~~vi~~r~e~~--~~~~~~~d~v~sRA~ 150 (168)
..-++|+++++++=+|+| ++.++-++ ....+.||+|+|--|
T Consensus 105 ~~siA~v~~~k~~EnL~n--l~t~~yDiNaa~~~e~YDFI~sTVV 147 (239)
T TIGR00477 105 EASIASVEEIKEKENLDN--LRTDVYDINAAALDEDYDFILSTVV 147 (239)
T ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 668875998887626711--0046554335540127874210201
No 33
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=97.91 E-value=0.00011 Score=47.94 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=78.2
Q ss_pred HHHHHHHHHHCCC-CCC-CCEEECCCCCHHHHHHHHCCCC-CCCCEEEEEHHHHHHHHHHHHHHHHH-CCCC-EEEECHH
Q ss_conf 6463564310012-344-3111114677335656522755-46634787500003899999999973-8980-9980426
Q gi|254780807|r 58 HVEDSLRVFQLHP-YPS-IWIDLGSGGGFPGIITSIQLSS-IEGGLVNLIESKNKKASFLRYVVQKT-AARG-KVFACRI 132 (168)
Q Consensus 58 Hi~DSl~~~~~~~-~~~-~ilDiGSGaGfPGi~laI~~p~-~~~~~v~Lves~~KK~~FL~~~~~~L-~L~~-~vi~~r~ 132 (168)
+-+-.+.+..+-. .+. .++|||+|.|.=+|=+|-..|+ . +||.+|+++..+++++.=.+++ +.++ .++.+.+
T Consensus 5 ~EvR~l~L~~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g---~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~a 81 (135)
T TIGR02469 5 REVRALTLAKLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSG---RVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDA 81 (135)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCC---EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 889999998717899994688960574838999997359860---79998537689879999999828999632563556
Q ss_pred H------HHHH---CCCCCCEE-EECCCCCHHHHHHHHHHHHCC
Q ss_conf 6------5331---24798699-991479989999984885206
Q gi|254780807|r 133 Q------EAPQ---MITTCDVI-SARALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 133 e------~~~~---~~~~~d~v-~sRA~a~l~~ll~~~~pllk~ 166 (168)
- +.+. ....+|-| +.=.-..+..|++++...|++
T Consensus 82 p~~~~~~~~~~~~~~~~~~Da~fvGGs~~~~~~il~~~~~~l~~ 125 (135)
T TIGR02469 82 PEELLNSDAPEDSAKLPEPDAVFVGGSGGKLEEILEAVERRLRP 125 (135)
T ss_pred CCCCCCCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 84333677771005887468888838971789999999850596
No 34
>KOG1499 consensus
Probab=97.90 E-value=2.9e-05 Score=51.24 Aligned_cols=91 Identities=14% Similarity=0.206 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHH
Q ss_conf 9864635643100123443111114677335656522755466347875000038999999999738980--99804266
Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQ 133 (168)
Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e 133 (168)
.++.-|++.--++.-.++.++|+|+|.|. |+++--.-...+|+.||-+..- .+-++++...++++ +++.+++|
T Consensus 45 t~aYr~~i~~n~~lf~dK~VlDVGcGtGI----LS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvE 119 (346)
T KOG1499 45 TLAYRNAILQNKHLFKDKTVLDVGCGTGI----LSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVE 119 (346)
T ss_pred HHHHHHHHHCCHHHCCCCEEEECCCCCCH----HHHHHHHHCCCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEE
T ss_conf 78878877516433079789975788128----8999887375339999626899-999999985686605999503057
Q ss_pred HHHHCCCCCCEEEECCCC
Q ss_conf 533124798699991479
Q gi|254780807|r 134 EAPQMITTCDVISARALA 151 (168)
Q Consensus 134 ~~~~~~~~~d~v~sRA~a 151 (168)
++.-..++.|+|+|-=.+
T Consensus 120 di~LP~eKVDiIvSEWMG 137 (346)
T KOG1499 120 DIELPVEKVDIIVSEWMG 137 (346)
T ss_pred EEECCCCCEEEEEEHHHH
T ss_conf 876475540299630124
No 35
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.81 E-value=6.5e-05 Score=49.22 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=61.4
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH-----HCCCC-EEEECHHHHHHHCCCC
Q ss_conf 01234431111146773356565227554663478750000389999999997-----38980-9980426653312479
Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK-----TAARG-KVFACRIQEAPQMITT 141 (168)
Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~-----L~L~~-~vi~~r~e~~~~~~~~ 141 (168)
++....+++|||||+|+-..++|-+... ++.|.-||+.+.=..--+.-.++ |+++| .|+.+.-..--+...+
T Consensus 79 hL~~~~~vLeiG~GSGY~aavlA~~v~~--~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~~AP 156 (228)
T TIGR00080 79 HLKPGAKVLEIGTGSGYQAAVLAEIVGR--DGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEEKAP 156 (228)
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCC
T ss_conf 2140355665047855899999998713--97189985357889999987654314440688658997788657102488
Q ss_pred CCEEEECCCCC
Q ss_conf 86999914799
Q gi|254780807|r 142 CDVISARALAD 152 (168)
Q Consensus 142 ~d~v~sRA~a~ 152 (168)
||-|..=|=+|
T Consensus 157 Yd~I~~~AA~k 167 (228)
T TIGR00080 157 YDAILVTAAAK 167 (228)
T ss_pred CCEEEEECCCC
T ss_conf 35277523789
No 36
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=97.80 E-value=7.7e-05 Score=48.77 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=68.1
Q ss_pred HCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH
Q ss_conf 46321304308999998986463564310012344311111467733565652275546634787500003899999999
Q gi|254780807|r 39 WSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVV 118 (168)
Q Consensus 39 ~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~ 118 (168)
++++.|||..-+ -++.. .+.++ +++++|+|.|.|=-++-||- ++..||.+|.++.-+..++.++
T Consensus 9 f~kky~lt~~HS-------ev~~a---~~~i~-pgk~LDlgcG~GRNslyLa~-----~G~~VtavD~n~~aL~~l~~ia 72 (192)
T pfam03848 9 FHKKYNTTPTHS-------EVLEA---VKTVK-PGKALDLGCGQGRNSLFLSL-----LGYDVTAVDHNENSIANLQDIK 72 (192)
T ss_pred HHHHCCCCCCCH-------HHHHH---HHHCC-CCCEEEECCCCCHHHHHHHH-----CCCEEEEEECCHHHHHHHHHHH
T ss_conf 776248998809-------99999---86379-97466604789731899986-----8991799979999999999999
Q ss_pred HHHCCCCEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 973898099804266533124798699991
Q gi|254780807|r 119 QKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 119 ~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
++-++++.+....+++. +..+.||+|+|-
T Consensus 73 ~~e~l~i~~~~~Din~~-~~~e~YD~IisT 101 (192)
T pfam03848 73 EKENLDIPTALYDINSA-SIDENYDFILST 101 (192)
T ss_pred HHCCCCCEEEEECCCCC-CCCCCCCEEEEE
T ss_conf 97099752687315556-876776879888
No 37
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.80 E-value=8.8e-05 Score=48.43 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=62.4
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168)
++.+.+++|||||.|+-.-++|-+-.. ..+|+.+|..+.-+.+-++..++++++| +++++...+-.....+||.|..
T Consensus 74 l~~~~~VLeIGtGsGY~tAlla~lvg~--~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~~apfD~Iiv 151 (214)
T PRK13942 74 LDEGQKVLEIGTGSGYHAAVVAEIVGK--SGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEENAPYDRIYV 151 (214)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 999997999679952999999997476--785799971799999999999863768758985675667844598127999
Q ss_pred C-CCCCHH
Q ss_conf 1-479989
Q gi|254780807|r 148 R-ALADLD 154 (168)
Q Consensus 148 R-A~a~l~ 154 (168)
- |+..++
T Consensus 152 ~aa~~~iP 159 (214)
T PRK13942 152 TAAGPDIP 159 (214)
T ss_pred EECCCCCC
T ss_conf 85176578
No 38
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=97.78 E-value=0.00011 Score=47.80 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEE-
Q ss_conf 123443111114677335656522755466347875000038999999999738980-998042665331247986999-
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVIS- 146 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~- 146 (168)
++.+.+++|||||.|+-.-+||-+-.. .+.|+-+|..+.-+.+-++..++++++| .++++...+--....+||.|.
T Consensus 71 l~~g~~VLeIGtGsGY~tAlLa~l~~~--~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~~~apfD~Iiv 148 (205)
T pfam01135 71 LKPGMRVLEIGSGSGYLTACFARMVGE--VGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWPEFAPYDAIHV 148 (205)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 899998999669965999999998387--876999835899999999999984888658984564558833398058999
Q ss_pred ECCCCCHHH
Q ss_conf 914799899
Q gi|254780807|r 147 ARALADLDT 155 (168)
Q Consensus 147 sRA~a~l~~ 155 (168)
+=|+..++.
T Consensus 149 ~aa~~~iP~ 157 (205)
T pfam01135 149 GAAAPEIPE 157 (205)
T ss_pred EEECCCCCH
T ss_conf 750676889
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.77 E-value=1.7e-05 Score=52.60 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 99899999999999999846321304308999998986463564310012344311111467733565652275546634
Q gi|254780807|r 21 VSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGL 100 (168)
Q Consensus 21 ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~ 100 (168)
+|+...-+|+.|+.-=--++++.+||..-+ | ++.. .+.++ +++.+|+|+|.|=-.+-||-. +..
T Consensus 83 ~SdD~~c~L~FyC~pedYf~KKY~lt~tHS-e------v~~a---~~~i~-pgkaLDLGCG~GRNsLyLa~~-----Gfd 146 (289)
T PRK12335 83 ASDDLECQLSFYCKPEDYFHKKYNLTPTHS-E------VLEA---AKTVK-PGKALDLGCGQGRNSLYLALL-----GFD 146 (289)
T ss_pred CCCCCEEEEEEECCHHHHHHHHCCCCCCCH-H------HHHH---HHHCC-CCCEEEECCCCCCCHHHHHHC-----CCC
T ss_conf 688804778886178887786338998619-9------9998---75268-874666047888227889757-----984
Q ss_pred EEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCCC
Q ss_conf 787500003899999999973898099804266533124798699991479
Q gi|254780807|r 101 VNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARALA 151 (168)
Q Consensus 101 v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~a 151 (168)
||.+|.+..-+.+|++++.+-+|++.+.-..+... ...+.||+|.|-.|-
T Consensus 147 VTA~D~N~~sl~~L~~ia~~E~L~i~~~~yDIN~a-~l~~~YDfI~STVV~ 196 (289)
T PRK12335 147 VTAVDINQASLENLQQIAEKENLNIRAGSYDINSA-SLQEEYDFILSTVVL 196 (289)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCC-CCCCCCCEEEEEEEE
T ss_conf 25886899999999999997198877257516666-667776789996788
No 40
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.71 E-value=0.00047 Score=44.27 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=77.9
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEE-CHHHH-HHH-CCCCCC
Q ss_conf 123443111114677335656522755466347875000038999999999738980--9980-42665-331-247986
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFA-CRIQE-APQ-MITTCD 143 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~-~r~e~-~~~-~~~~~d 143 (168)
...+++++.|||+.|+-++-+|-..|+ ..+++-+|.+++++..-++..++-|+.. +.+. +++-+ +.. ..++||
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~--~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPD--DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred HCCCCEEEEEECCCCHHHHHHHHHCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCC
T ss_conf 349864999635237999999963888--976999707989999999999975976528988357479999733478856
Q ss_pred EEEECCC-CCHHHHHHHHHHHHCC
Q ss_conf 9999147-9989999984885206
Q gi|254780807|r 144 VISARAL-ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 144 ~v~sRA~-a~l~~ll~~~~pllk~ 166 (168)
+|..=|= +..+..++.+.++|++
T Consensus 135 liFIDadK~~yp~~le~~~~lLr~ 158 (219)
T COG4122 135 LVFIDADKADYPEYLERALPLLRP 158 (219)
T ss_pred EEEEECCHHHCHHHHHHHHHHHCC
T ss_conf 899837843599999999997378
No 41
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.67 E-value=9.3e-05 Score=48.29 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168)
.+.+++|+|||.|. |||+--.+...+|+.+|-...-+.--++-++..++...+......+.. ..+||+|+|-=.
T Consensus 160 ~~~~vlD~GcGSGI----LaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~~~~~--~~~~DlIvANIl 233 (294)
T pfam06325 160 PGETVLDVGCGSGI----LAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGDLP--EGKADVVVANIL 233 (294)
T ss_pred CCCEEEEECCCHHH----HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCEEEEHHC
T ss_conf 69867850565089----999999759996899988899999999999976998317996443155--664578984108
Q ss_pred CCH
Q ss_conf 998
Q gi|254780807|r 151 ADL 153 (168)
Q Consensus 151 a~l 153 (168)
+++
T Consensus 234 a~~ 236 (294)
T pfam06325 234 ADP 236 (294)
T ss_pred HHH
T ss_conf 999
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.63 E-value=0.00024 Score=45.92 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=57.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 23443111114677335656522755466347875000038999999999738980--9980426653312479869999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~s 147 (168)
..+.+++|+|||.|. |||+-..+...+|+.+|-...-+.--++-++..++.. .+..... .....+||+|+|
T Consensus 161 ~~~~~vLDvG~GSGI----LaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~---~~~~~~~DlvvA 233 (298)
T PRK00517 161 LPGKTVLDVGCGSGI----LAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPED---QPLEGKADVIVA 233 (298)
T ss_pred CCCCEEEEECCCCHH----HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCC---CCCCCCCCEEEE
T ss_conf 468868871577069----9999997499849999898999999999999869984268961664---344676468997
Q ss_pred CCCCCH-HHHHHHHHHHHCC
Q ss_conf 147998-9999984885206
Q gi|254780807|r 148 RALADL-DTLLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~l-~~ll~~~~pllk~ 166 (168)
-=.+.+ ..++.-....+++
T Consensus 234 NIla~vl~~l~~~~~~~l~~ 253 (298)
T PRK00517 234 NILANPLIELAPDLAALVKP 253 (298)
T ss_pred ECCHHHHHHHHHHHHHHHCC
T ss_conf 31589999999999997389
No 43
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.58 E-value=0.00034 Score=45.03 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=62.6
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECH-HHHHHHCCCCCCEEEECCC---
Q ss_conf 11114677335656522755466347875000038999999999738980-998042-6653312479869999147---
Q gi|254780807|r 76 IDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACR-IQEAPQMITTCDVISARAL--- 150 (168)
Q Consensus 76 lDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r-~e~~~~~~~~~d~v~sRA~--- 150 (168)
+|+|+|.|.-...++=.+|.. +|+.+|.++.-+...++-....+..+ ..+... .+..+....+||+|++..+
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vl~~ 77 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGL---EYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHH 77 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCCHHH
T ss_conf 988633799999999878998---89998598899999999998713453111000000022203589889961041772
Q ss_pred -CCHHHHHHHHHHHHCC
Q ss_conf -9989999984885206
Q gi|254780807|r 151 -ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 151 -a~l~~ll~~~~pllk~ 166 (168)
.++..+++-...+||+
T Consensus 78 ~~~~~~~l~~~~r~Lkp 94 (98)
T pfam08242 78 LADPRAVLRNLRRLLKP 94 (98)
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 58999999999997499
No 44
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=97.49 E-value=0.00055 Score=43.86 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=59.0
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHHCCCCCCEEEECCC----
Q ss_conf 111146773356565227554663478750000389999999997389-809980426653312479869999147----
Q gi|254780807|r 76 IDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQMITTCDVISARAL---- 150 (168)
Q Consensus 76 lDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~~~~~~d~v~sRA~---- 150 (168)
+|+|+|.|.....++= ++. .+++.+|.+..-+...+ ++..- +..+++..+++.+-..++||+|++..+
T Consensus 1 LDiGcG~G~~~~~l~~-~~~---~~v~giD~s~~~i~~a~---~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~~l~~~ 73 (95)
T pfam08241 1 LDVGCGTGLLTEALAR-LPG---AQVTGVDLSPEMLALAR---KRAQEDGLTFVVGDAEDLPFPDESFDVVVSSLVLHHL 73 (95)
T ss_pred CCCCCCCCHHHHHHHH-CCC---CEEEEEECCHHHHHHHH---HHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHC
T ss_conf 9646249999999984-579---99999949789987766---3102669479980332467554568599983306646
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 9989999984885206
Q gi|254780807|r 151 ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 151 a~l~~ll~~~~pllk~ 166 (168)
..+..+++-..+.||+
T Consensus 74 ~~~~~~l~~~~r~Lkp 89 (95)
T pfam08241 74 PDPERALREIARVLKP 89 (95)
T ss_pred CCHHHHHHHHHHHCCC
T ss_conf 8999999999987786
No 45
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.47 E-value=0.00048 Score=44.21 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=59.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHH-CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEE-
Q ss_conf 2344311111467733565652-2755466347875000038999999999738980--99804266533124798699-
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSI-QLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVI- 145 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI-~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v- 145 (168)
+.+.+++|||||.|+-.-++|= +-+ .+.|+.||..+.=+.+-++...+++..| .++++...+-.+...+||.|
T Consensus 71 ~~~~~VLeIGtGsGY~tAlla~l~~~---~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~apfD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 99998999789851999999998374---771799953699999999999985986330679765565774349804899
Q ss_pred EECCCCCHHH
Q ss_conf 9914799899
Q gi|254780807|r 146 SARALADLDT 155 (168)
Q Consensus 146 ~sRA~a~l~~ 155 (168)
++=|+..++.
T Consensus 148 v~aa~~~iP~ 157 (205)
T PRK13944 148 VTAAASTIPS 157 (205)
T ss_pred EEEECCCCCH
T ss_conf 9850776899
No 46
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.47 E-value=0.00047 Score=44.21 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=59.9
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEE-
Q ss_conf 123443111114677335656522755466347875000038999999999738980-998042665331247986999-
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVIS- 146 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~- 146 (168)
++.+.++++||||.|+=.-+||-+- .+|+.+|..+.=+..-+...+.++++| +++++...+-.....+||.|.
T Consensus 76 l~~~~~VLeIGtGsGY~tAlLa~l~-----~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~~~~pfD~Iii 150 (213)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-----ERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILV 150 (213)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHC-----CCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 6899759996598609999999862-----92899942899999999999984998769996887667876697248999
Q ss_pred ECCCCCHH
Q ss_conf 91479989
Q gi|254780807|r 147 ARALADLD 154 (168)
Q Consensus 147 sRA~a~l~ 154 (168)
+=|+..++
T Consensus 151 ~~a~~~~P 158 (213)
T PRK00312 151 TAAAPEIP 158 (213)
T ss_pred EECCHHHH
T ss_conf 84341225
No 47
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0004 Score=44.66 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 23443111114677335656522755466347875000038999999999738980--9980426653312479869999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~s 147 (168)
..+.+++|+|||.|. |||+--.+....+..+|-.+--+..-++-++..+.+. .+-.....+.+. ..+||+|+|
T Consensus 161 ~~g~~vlDvGcGSGI----LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGI----LAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-NGPFDVIVA 235 (300)
T ss_pred CCCCEEEEECCCHHH----HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC-CCCCCEEEE
T ss_conf 589879982678159----999999819866899718889999999999976996022003456300013-686568986
Q ss_pred CCCCCHHH-HHHHHHHHHCC
Q ss_conf 14799899-99984885206
Q gi|254780807|r 148 RALADLDT-LLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~l~~-ll~~~~pllk~ 166 (168)
-=.|.+-. |.+-..+++|+
T Consensus 236 NILA~vl~~La~~~~~~lkp 255 (300)
T COG2264 236 NILAEVLVELAPDIKRLLKP 255 (300)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 05278999999999987088
No 48
>KOG2904 consensus
Probab=97.44 E-value=0.00077 Score=42.99 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEE
Q ss_conf 999989864635643100123443111114677335656522755466347875000038999999999738980--998
Q gi|254780807|r 51 VEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVF 128 (168)
Q Consensus 51 ~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi 128 (168)
..+-|.+-++|-+.-....+ +..|+|+|||.|.-.+-++--.|. ..|+.+|.+.+-+....+-+.++++.+ .|+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~---~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904 129 ETEEWVEAVIDALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQ---CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred CHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 67999999999975565326-666887057831889999834787---34899853288999999889987415846898
Q ss_pred ECHHH-----HHHHCCCCCCEEEEC
Q ss_conf 04266-----533124798699991
Q gi|254780807|r 129 ACRIQ-----EAPQMITTCDVISAR 148 (168)
Q Consensus 129 ~~r~e-----~~~~~~~~~d~v~sR 148 (168)
|---| +.+...+++|.++|-
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904 205 HNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ECCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 4122201256554545752488538
No 49
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=97.43 E-value=0.0011 Score=42.11 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEE
Q ss_conf 123443111114677335656522755466347875000038999999999738980--998042665331247986999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVIS 146 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~ 146 (168)
++.+.+|+|||+|=|=..+-+|=-+ +.+|+-|-.+..-..|.++-+++.||.+ ++....-.++ .++||-|+
T Consensus 60 l~~g~~vLDiGCGWG~~a~~~a~~~----g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~---~~~fD~Iv 132 (273)
T pfam02353 60 LKPGMTLLDIGCGWGGLMRRAAERY----DVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIV 132 (273)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC---CCCCCEEE
T ss_conf 8999989997888089999999847----9518999797899999999998708743212000626547---66666677
Q ss_pred ECCC------CCHHHHHHHHHHHHCC
Q ss_conf 9147------9989999984885206
Q gi|254780807|r 147 ARAL------ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 147 sRA~------a~l~~ll~~~~pllk~ 166 (168)
|--+ ..++.+.+-...+||+
T Consensus 133 Siem~Ehvg~~~~~~~f~~i~~~Lkp 158 (273)
T pfam02353 133 SVGMFEHVGHENYDTFFKKLYNLLPP 158 (273)
T ss_pred EEHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 65168762877799999999986588
No 50
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.42 E-value=0.00055 Score=43.84 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=59.7
Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEE
Q ss_conf 0012344311111467733565652275546634787500003899999999973898-099804266533124798699
Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVI 145 (168)
Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v 145 (168)
++++ +++++|+|+|.|==++-||- .+..||.+|.+..-+..++..+.+-++. +......++.. .....||+|
T Consensus 27 ~~~~-~g~~LDlgcG~Grna~~La~-----~G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~-~~~~~yDlI 99 (198)
T PRK11207 27 KVVK-PGRTLDLGCGNGRNSLYLAA-----NGYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNL-TFDGEYDFI 99 (198)
T ss_pred CCCC-CCCEEEECCCCCHHHHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCCCCCEE
T ss_conf 3589-97477724788786999986-----8985999979999999999999875998246562031238-877770589
Q ss_pred EECCCC
Q ss_conf 991479
Q gi|254780807|r 146 SARALA 151 (168)
Q Consensus 146 ~sRA~a 151 (168)
+|..|-
T Consensus 100 lstvv~ 105 (198)
T PRK11207 100 LSTVVL 105 (198)
T ss_pred EEEEEE
T ss_conf 786452
No 51
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.41 E-value=0.00073 Score=43.13 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE
Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168)
...+.+|++||||.|.-.-+||=+-.. .+.|+-||..+.=+..-+...+++|.+| .++++....--+...+||.|+.
T Consensus 73 l~pg~rVLEIGTGSGYqAAlLA~Lvg~--~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~APYD~IIV 150 (317)
T PRK13943 73 LDKGMRVLEIGGGTGYNAAVMSRVVGE--KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV 150 (317)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 899986899657743899999998487--875999986799999999999977998649997998888866799778999
Q ss_pred CC
Q ss_conf 14
Q gi|254780807|r 148 RA 149 (168)
Q Consensus 148 RA 149 (168)
-|
T Consensus 151 TA 152 (317)
T PRK13943 151 TV 152 (317)
T ss_pred EE
T ss_conf 85
No 52
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00069 Score=43.26 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=61.7
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHH-HHHCCCCCCEE-E
Q ss_conf 234431111146773356565227554663478750000389999999997389-80998042665-33124798699-9
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQE-APQMITTCDVI-S 146 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~-~~~~~~~~d~v-~ 146 (168)
..+.++++||||.|+=.=+||=+- .+|+-+|+.+.=+.+-+.-.+.+++ |+.++++..-. +++ ..+||.| +
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~-----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~-~aPyD~I~V 144 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV-----GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE-EAPYDRIIV 144 (209)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH-----CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCEEEE
T ss_conf 999868887778309999999974-----84999997199999999999976987349997885568877-798478999
Q ss_pred ECCCCCHHH-HHH
Q ss_conf 914799899-999
Q gi|254780807|r 147 ARALADLDT-LLE 158 (168)
Q Consensus 147 sRA~a~l~~-ll~ 158 (168)
+-|+..++. |++
T Consensus 145 taaa~~vP~~Ll~ 157 (209)
T COG2518 145 TAAAPEVPEALLD 157 (209)
T ss_pred EECCCCCCHHHHH
T ss_conf 5035779989998
No 53
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=97.34 E-value=0.00026 Score=45.75 Aligned_cols=90 Identities=20% Similarity=0.141 Sum_probs=63.6
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECH-H-HHHHHCCCCCCEEEEC
Q ss_conf 4311111467733565652275546634787500003899999999973898--0998042-6-6533124798699991
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACR-I-QEAPQMITTCDVISAR 148 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r-~-e~~~~~~~~~d~v~sR 148 (168)
+.++|+|+|+|. |||+--.++...++.+|-.+--+.--++=....++. +.++... + |.......++|+|+|=
T Consensus 198 ~~viD~GCGSGI----L~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~~~~~e~~~DViVAN 273 (330)
T TIGR00406 198 KKVIDVGCGSGI----LSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPELEQPIEGKADVIVAN 273 (330)
T ss_pred CEEEEECCCHHH----HHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEC
T ss_conf 547871267178----9999997512311221377289999997687458864576432057875345322566757880
Q ss_pred CCCCH-HHHHHHHHHHHCC
Q ss_conf 47998-9999984885206
Q gi|254780807|r 149 ALADL-DTLLEYSFPWLYQ 166 (168)
Q Consensus 149 A~a~l-~~ll~~~~pllk~ 166 (168)
=+|.+ ..|.....+|+|.
T Consensus 274 iLA~vi~~L~p~~~~L~~~ 292 (330)
T TIGR00406 274 ILAEVIKELYPQFSRLVKP 292 (330)
T ss_pred CHHHHHHHHHHHHHHHCCC
T ss_conf 0245787641355131068
No 54
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.32 E-value=0.0035 Score=39.20 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCC
Q ss_conf 100123443111114677335656522755466347875000038999999999738980--998042665331247986
Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCD 143 (168)
Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d 143 (168)
....+.+..++|.-+|-|-=+||+|-..+ ...|+.+|-++.-+.++++-++..++++ +++++.+.++.. ..+||
T Consensus 95 ~~~~~~ge~VlD~faGvG~f~l~~ak~~~---~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~~-~~~~D 170 (199)
T pfam02475 95 AKLVKEGEVVVDMFAGIGPFSIPIAKHSK---AKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVIL-EGVAD 170 (199)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCC-CCCCC
T ss_conf 97448998899816886577899864078---648999828999999999999980999836999287878604-67400
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 999914799899999848852067
Q gi|254780807|r 144 VISARALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 144 ~v~sRA~a~l~~ll~~~~pllk~k 167 (168)
.|+.==......+++.+.+.+|+.
T Consensus 171 rvimnlP~~a~~fL~~A~~~lk~g 194 (199)
T pfam02475 171 RVIMNLPKSAHEFLDKALRAVKDG 194 (199)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 999489731699999999985589
No 55
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.30 E-value=0.0014 Score=41.46 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 98646356431001234431111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA 135 (168)
Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~ 135 (168)
.|-..|=+..++.. .+.+|+|+|+|.|-=.-.|+--+|+- +|+.+|++..-+..-++ -.-+.+...+.++++
T Consensus 17 ~rp~~DLl~~l~~~-~~~~vlDlGCG~G~~t~~l~~r~p~a---~v~GiD~S~~Ml~~Ar~----~~~~~~f~~~D~~~~ 88 (252)
T PRK01683 17 TRPAVELLARVPLE-NVEYVADLGCGPGNSTALLHQRWPAA---RITGIDSSPAMLAEARQ----ALPDCQFVEADIRNW 88 (252)
T ss_pred HCHHHHHHHCCCCC-CCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHH----HCCCCEEEECCHHCC
T ss_conf 46399998418888-99989993774989999999977998---79999898999999997----589983872504207
Q ss_pred HHCCCCCCEEEECCCCCH
Q ss_conf 312479869999147998
Q gi|254780807|r 136 PQMITTCDVISARALADL 153 (168)
Q Consensus 136 ~~~~~~~d~v~sRA~a~l 153 (168)
.. .++||+|+|-|.-.+
T Consensus 89 ~~-~~~~D~ifSNaalhW 105 (252)
T PRK01683 89 QP-EQALDLIYANASLQW 105 (252)
T ss_pred CC-CCCCCEEEEEEEHHH
T ss_conf 87-678788956100450
No 56
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.29 E-value=0.0013 Score=41.72 Aligned_cols=92 Identities=23% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECC
Q ss_conf 23443111114677335656522755466347875000038999999999738980998042665331247986999914
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168)
..+.+|+|||+|.|=|..-||=-+ +..|+-+|-+..-+...++-... .-+++.....+.+.+-....||+|.||-
T Consensus 51 ~~~~kVLDvGCG~GG~a~~LA~~y----g~~V~GiDls~~~~~~A~er~~~-~~~v~f~~~d~~~~~f~d~sFDvV~S~d 125 (263)
T PTZ00098 51 DANSKVLDIGSGLGGGCKYINEKY----GAHTHGIDICEKIVNIAKERNQD-KAKIEFEAKDILKKDFPENNFDLIYSRD 125 (263)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCEEEEEEEH
T ss_conf 999868886888788999999974----98799985889999999985512-5854899678536778867455898750
Q ss_pred -CC-----CHHHHHHHHHHHHCC
Q ss_conf -79-----989999984885206
Q gi|254780807|r 150 -LA-----DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 150 -~a-----~l~~ll~~~~pllk~ 166 (168)
+- .-+.+++=+.+.||+
T Consensus 126 ailHip~~DK~~l~~e~~RvLKP 148 (263)
T PTZ00098 126 AILHLSLADKKKLFEKCYKWLKP 148 (263)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 22308824399999999998468
No 57
>KOG1270 consensus
Probab=97.24 E-value=0.001 Score=42.27 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE-------EECHHHHHHHCCCCCCE
Q ss_conf 44311111467733565652275546634787500003899999999973898099-------80426653312479869
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKV-------FACRIQEAPQMITTCDV 144 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~v-------i~~r~e~~~~~~~~~d~ 144 (168)
+.+++|+|+|+|+=..|||=. +..|+.+|...+-+..-++-+...-..+.- .+..+|.. .++||.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-----ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDa 161 (282)
T KOG1270 90 GMKILDVGCGGGLLSEPLARL-----GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDA 161 (282)
T ss_pred CCEEEEECCCCCCCCHHHHHH-----CCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHC---CCCCCE
T ss_conf 864787236755023235750-----885685265599999998751049033056414630201533214---565645
Q ss_pred EEECC----CCCHHHHHHHHHHHHCC
Q ss_conf 99914----79989999984885206
Q gi|254780807|r 145 ISARA----LADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 145 v~sRA----~a~l~~ll~~~~pllk~ 166 (168)
|++=- |+.+..+++-+..+||+
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lkP 187 (282)
T KOG1270 162 VVCSEVLEHVKDPQEFLNCLSALLKP 187 (282)
T ss_pred EEEHHHHHHHHCHHHHHHHHHHHHCC
T ss_conf 44198999874789999999998488
No 58
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=97.23 E-value=0.0025 Score=40.05 Aligned_cols=138 Identities=19% Similarity=0.238 Sum_probs=86.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHHH-HHHHHHHHCCC--CCCCCEEECCCCCHHHHHHHHC
Q ss_conf 41799989999999999999984632-13043089999989864-63564310012--3443111114677335656522
Q gi|254780807|r 17 NTYNVSRETLEKLEYFYFLFLKWSKK-INLVSSSTVEDFWIRHV-EDSLRVFQLHP--YPSIWIDLGSGGGFPGIITSIQ 92 (168)
Q Consensus 17 ~~~~ls~eq~~~l~~y~~ll~~~N~~-~NLts~~~~~~~~~rHi-~DSl~~~~~~~--~~~~ilDiGSGaGfPGi~laI~ 92 (168)
..-++|+++.++++.-+..|.-|.|- ++|-++. .+.=|.-.. +| .+.+++. ++++|+|||+|.|.=+.=+.-.
T Consensus 60 ~~~~ls~~~~~~l~~~L~~l~PWRKGPF~l~gi~-IDtEWrSd~KW~--Rl~~~i~~L~gk~VlDVGcgNGYy~~RMlg~ 136 (315)
T pfam08003 60 TEEPLSHGEQKKLEQLLRALMPWRKGPFHLHGVH-IDTEWRSDWKWD--RVLPHLSPLKGRTILDVGCGNGYHMWRMLGE 136 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC-CCCCCCCCCCHH--HHHHHHCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 7888998999999999984299777981206800-442100422299--8873422426898875177864999986223
Q ss_pred CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEEECCC-----CCHHHHHHHHHH
Q ss_conf 755466347875000038999999999738980--9980426653312479869999147-----998999998488
Q gi|254780807|r 93 LSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVISARAL-----ADLDTLLEYSFP 162 (168)
Q Consensus 93 ~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~sRA~-----a~l~~ll~~~~p 162 (168)
-|+ .|.-+|++..=..=...+..-++-+. .++--++|+++.. ..||+|.|=.| +|+..|.++-.-
T Consensus 137 ga~----~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~-~~FDtVFsMGVLYHrrsP~~hL~~Lk~~ 208 (315)
T pfam08003 137 GAA----LVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL-EAFDTVFSMGVLYHRRSPLDHLLQLKDQ 208 (315)
T ss_pred CCC----EEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC-CCCCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 998----79988981999999999999708987568853676548663-4215577654443268989999999985
No 59
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.22 E-value=0.00067 Score=43.36 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=55.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
.+.+++|+|.|.|.-.++||=. +..|+.+|-++.-+..-++-+.+.+++ ++...+..|. ..+.||+|+|=
T Consensus 63 ~G~rVLDaGCGtG~la~~LA~~-----Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~---~~G~FD~Vv~m 134 (230)
T PRK07580 63 TGLSILDAGCGTGSLSIPLARR-----GAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLES---LLGSFDTVVCL 134 (230)
T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCC---CCCCCCCHHHC
T ss_conf 8998988187867879999977-----998999838999999999755862787675389667654---57986602333
No 60
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=97.19 E-value=0.0016 Score=41.11 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=50.4
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEECHHH---HHH---HCCCCCC
Q ss_conf 3443111114677335656522755466347875000038999999999738-98099804266---533---1247986
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA-ARGKVFACRIQ---EAP---QMITTCD 143 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-L~~~vi~~r~e---~~~---~~~~~~d 143 (168)
.+++|+++|+|.|+|||.+|...+.. .|++-|- ..-...+++-+.... ++..+...... +.+ ....+||
T Consensus 44 ~~k~VLELGaG~GL~Gi~~a~~~~~~---~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD 119 (171)
T pfam10294 44 SGKNVLELGSGCGLVGIAVALLLPGA---SVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVD 119 (171)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCC---EEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCC
T ss_conf 68767870566575899999857985---8996383-7899999999997057899669998110898843331467767
Q ss_pred EEEECCC----CCHHHHHHHHHHHHCC
Q ss_conf 9999147----9989999984885206
Q gi|254780807|r 144 VISARAL----ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 144 ~v~sRA~----a~l~~ll~~~~pllk~ 166 (168)
+|++==+ ...+.|++-...++++
T Consensus 120 ~Il~sD~iY~~~~~~~L~~ti~~ll~~ 146 (171)
T pfam10294 120 LILAADCVYNEDAFPLLVKTLKDLLGK 146 (171)
T ss_pred EEEEECEEECHHHHHHHHHHHHHHHCC
T ss_conf 899712133577799999999999589
No 61
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0028 Score=39.73 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHH
Q ss_conf 986463564310012344311111467733565652275546634787500003899999999973898--099804266
Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQ 133 (168)
Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e 133 (168)
.+|+.+.+. ++.+.+++|||+|.|-=.+-.|=-+ +..|+.++-+.--..+.++.+++.|++ +++.-..-+
T Consensus 61 ~~~~~~kl~----L~~G~~lLDiGCGWG~l~~~aA~~y----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r 132 (283)
T COG2230 61 LDLILEKLG----LKPGMTLLDIGCGWGGLAIYAAEEY----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132 (283)
T ss_pred HHHHHHHCC----CCCCCEEEEECCCHHHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 999997569----9999989874788449999999984----99799966899999999999997599766079965621
Q ss_pred HHHHCCCCCCEEEEC----CCCC--HHHHHHHHHHHHCCC
Q ss_conf 533124798699991----4799--899999848852067
Q gi|254780807|r 134 EAPQMITTCDVISAR----ALAD--LDTLLEYSFPWLYQK 167 (168)
Q Consensus 134 ~~~~~~~~~d~v~sR----A~a~--l~~ll~~~~pllk~k 167 (168)
++ .++||-|+|= +|++ .+.+.+.+...|++.
T Consensus 133 d~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 133 DF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred CC---CCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 03---24342055600688737102899999999645999
No 62
>PRK05785 hypothetical protein; Provisional
Probab=96.90 E-value=0.0091 Score=36.80 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999898646356431001234431111146773356565227554663478750000389999999997389809980
Q gi|254780807|r 50 TVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFA 129 (168)
Q Consensus 50 ~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~ 129 (168)
.....|.+..++.+..... +.+.+++|+|||.|- +|..... ...++.+|.+..-..-- . ....-+.
T Consensus 31 G~~~~Wrr~~v~~~~~~~~-~~~~~vLDva~GTGd----~a~~l~~--~~~v~~~D~s~~ML~~a---~----~~~~~v~ 96 (225)
T PRK05785 31 GNVDRWRAEAVKLIYKYDG-KSPLKVLDAGAGPGN----MAYHLRK--IRYVVALDYTEEMLRLN---L----VADDKVV 96 (225)
T ss_pred CCHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCHH----HHHHHHC--CCEEEEEECCHHHHHHH---H----HCCCCEE
T ss_conf 9709999999999873067-888828995688439----9999634--78699998899999987---6----4321137
Q ss_pred CHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHHHHHC
Q ss_conf 426653312479869999----147998999998488520
Q gi|254780807|r 130 CRIQEAPQMITTCDVISA----RALADLDTLLEYSFPWLY 165 (168)
Q Consensus 130 ~r~e~~~~~~~~~d~v~s----RA~a~l~~ll~~~~pllk 165 (168)
+.+|++|=....||.||+ |.|.+++.-+.-..+-++
T Consensus 97 ~~ae~LPf~d~sFD~vt~~FglRN~~d~~~al~E~~RVlk 136 (225)
T PRK05785 97 GSFEAMPFRDKSFDLVMSGYALHASDDIEKAVAEFSRVSR 136 (225)
T ss_pred EHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 3185399998825277634430048889999999997309
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=96.83 E-value=0.0018 Score=40.82 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=58.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--C-CEEEECHHHHHHHCC-CCCCEE
Q ss_conf 234431111146773356565227554663478750000389999999997389--8-099804266533124-798699
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--R-GKVFACRIQEAPQMI-TTCDVI 145 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~-~~vi~~r~e~~~~~~-~~~d~v 145 (168)
..+.+|||-|.|+|+=.++|| .++..|..+|-+++=++--++=....+- | ++..-+..+. .. ++||.|
T Consensus 53 l~G~~vlDAGCGtGllsi~LA-----k~GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s---~~~G~fD~V 124 (224)
T TIGR02021 53 LKGKKVLDAGCGTGLLSIELA-----KRGAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLES---LELGKFDAV 124 (224)
T ss_pred CCCCEEEECCCCCCHHHHHHH-----HCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHH---HCCCCCCEE
T ss_conf 876777755889315449888-----479868662376899999986210021016700354530444---138985556
Q ss_pred EECCCCCHHHHHHHHH
Q ss_conf 9914799899999848
Q gi|254780807|r 146 SARALADLDTLLEYSF 161 (168)
Q Consensus 146 ~sRA~a~l~~ll~~~~ 161 (168)
+| ++.|+.|+.
T Consensus 125 V~-----mDvlIHYp~ 135 (224)
T TIGR02021 125 VA-----MDVLIHYPA 135 (224)
T ss_pred EE-----EHHHHHCCH
T ss_conf 75-----212232022
No 64
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.80 E-value=0.012 Score=36.13 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC-
Q ss_conf 4431111146773356565227554663478750000389999999997389809980426653312479869999147-
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL- 150 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~- 150 (168)
..+|+|+|+|.|.=.-.++- ....++.+|-+..-+.- +.. -......+++.+|.+|-....||.|+|-..
T Consensus 43 ~~~vLDlGcGtG~~t~~l~~-----~~~~v~~~Dls~~Ml~~---a~~-~~~~~~~~~~D~e~Lp~~~~sfDli~S~~~l 113 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE-----RGSQVTALDLSPPMLAQ---ARQ-KDAADHYLAGDIESLPLATATFDLAWSNLAV 113 (251)
T ss_pred CCCEEEEEEHHHHHHHHHHH-----CCCEEEEEECCHHHHHH---HHH-HCCCHHHHHCHHHHCCCCCCCCCEEEECCCH
T ss_conf 99399983100278999997-----49969999598999999---987-4863343536063099987882178550404
Q ss_pred ---CCHHHHHHHHHHHHCC
Q ss_conf ---9989999984885206
Q gi|254780807|r 151 ---ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 151 ---a~l~~ll~~~~pllk~ 166 (168)
.+++..+.=....||+
T Consensus 114 qW~~d~~~~l~e~~rvLkP 132 (251)
T PRK10258 114 QWCGNLSTALRELYRVVRP 132 (251)
T ss_pred HHCCCHHHHHHHHHHHCCC
T ss_conf 5259999999999964589
No 65
>PRK06202 hypothetical protein; Provisional
Probab=96.69 E-value=0.0027 Score=39.83 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCC-CCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECC
Q ss_conf 34431111146773356565227554-66347875000038999999999738980998042665331247986999914
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSI-EGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~-~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168)
.+-+|+|||+|+|-=...+|=.-... -..+++.+|.+..-+.+-+.-....++..+....... ....+.||+|+|--
T Consensus 61 r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l--~~~~~~~DvV~~sl 138 (233)
T PRK06202 61 RPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDEL--VAEGERFDVVYSNH 138 (233)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHH--CCCCCCCCEEEHHH
T ss_conf 8728998347875799999999975599638999779889999998734036983699734320--24578875760324
Q ss_pred C
Q ss_conf 7
Q gi|254780807|r 150 L 150 (168)
Q Consensus 150 ~ 150 (168)
|
T Consensus 139 ~ 139 (233)
T PRK06202 139 F 139 (233)
T ss_pred H
T ss_conf 6
No 66
>KOG1500 consensus
Probab=96.54 E-value=0.006 Score=37.87 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=53.7
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEECC
Q ss_conf 4431111146773356565227554663478750000389999999997389--80998042665331247986999914
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISARA 149 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168)
++.++|+|.|.|+-.+--|-+ ...+|+.||.+..--. -+..++-.++ +.+||-+.+|++. ..++.|+++|--
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA----GA~~vYAvEAS~MAqy-A~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEP 251 (517)
T KOG1500 178 DKIVLDVGAGSGILSFFAAQA----GAKKVYAVEASEMAQY-ARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEP 251 (517)
T ss_pred CCEEEEECCCCCHHHHHHHHH----CCCEEEEEEHHHHHHH-HHHHHHCCCCCCEEEECCCCCCEEC-CCCCCCEEEECC
T ss_conf 748998158824899999873----8653898745679999-9998743663203787056320103-751034787256
Q ss_pred CCCH
Q ss_conf 7998
Q gi|254780807|r 150 LADL 153 (168)
Q Consensus 150 ~a~l 153 (168)
.+-+
T Consensus 252 MG~m 255 (517)
T KOG1500 252 MGYM 255 (517)
T ss_pred CHHH
T ss_conf 2141
No 67
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.03 Score=33.78 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=66.6
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHH
Q ss_conf 63213043089999989864635643100123443111114677335656522755466347875000038999999999
Q gi|254780807|r 40 SKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQ 119 (168)
Q Consensus 40 N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~ 119 (168)
|-+.-|--..|+.++-..-+.+-. .-..+ .+..++|+|+|.|.=|+-.+.+-|. +|+.||....-+.-.+....
T Consensus 16 ~p~~~LEQY~Tp~~~Aa~il~~a~-~~g~l-~g~~V~DlG~GTG~La~ga~~lGa~----~V~~vdiD~~a~ei~r~N~~ 89 (198)
T COG2263 16 NPKLGLEQYRTPAPLAAYILWVAY-LRGDL-EGKTVLDLGAGTGILAIGAALLGAS----RVLAVDIDPEALEIARANAE 89 (198)
T ss_pred CCCCCCEECCCCHHHHHHHHHHHH-HCCCC-CCCEEEECCCCCCHHHHHHHHCCCC----EEEEEECCHHHHHHHHHHHH
T ss_conf 998663334798489999999998-73884-7888888278847889999862971----79999369899999998888
Q ss_pred HHCCCCEEEECHHHHHHHCCCCCCEEE
Q ss_conf 738980998042665331247986999
Q gi|254780807|r 120 KTAARGKVFACRIQEAPQMITTCDVIS 146 (168)
Q Consensus 120 ~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168)
+++-++..+.+++.++. .++|+++
T Consensus 90 ~l~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 90 ELLGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred HHCCCEEEEECCHHHCC---CCCCEEE
T ss_conf 60884699982101147---7666699
No 68
>KOG4300 consensus
Probab=96.48 E-value=0.017 Score=35.16 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=69.2
Q ss_pred HHHHHCCCCCEEEECC--------HHHHHHHHHHHHHHHHHCCCC--CCCCEEECCCCC--HHHHHHHHCCCCCCCCEEE
Q ss_conf 9998463213043089--------999989864635643100123--443111114677--3356565227554663478
Q gi|254780807|r 35 LFLKWSKKINLVSSST--------VEDFWIRHVEDSLRVFQLHPY--PSIWIDLGSGGG--FPGIITSIQLSSIEGGLVN 102 (168)
Q Consensus 35 ll~~~N~~~NLts~~~--------~~~~~~rHi~DSl~~~~~~~~--~~~ilDiGSGaG--fPGi~laI~~p~~~~~~v~ 102 (168)
+.++|+++--+.=... .-+-+.|-+.+-++ .+.-. ...++.+|+|.| ||= +|....++||
T Consensus 32 ~n~~~~~~~~~~~p~~~ft~~yne~~~~ykrelFs~i~--~~~gk~~K~~vLEvgcGtG~Nfkf------y~~~p~~svt 103 (252)
T KOG4300 32 LNYESRQKSDLLIPNSNFTSIYNEIADSYKRELFSGIY--YFLGKSGKGDVLEVGCGTGANFKF------YPWKPINSVT 103 (252)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCEEEECCCCCCCCCC------CCCCCCCEEE
T ss_conf 77885276556651367799999999999999985268--773435751369961468888535------5578885689
Q ss_pred EEHHHHHHHHHHHHHHHHHC-CCCE-EEECHHHHHHHC-CCCCCEEEEC----CCCCHHHHHHHHHHHHC
Q ss_conf 75000038999999999738-9809-980426653312-4798699991----47998999998488520
Q gi|254780807|r 103 LIESKNKKASFLRYVVQKTA-ARGK-VFACRIQEAPQM-ITTCDVISAR----ALADLDTLLEYSFPWLY 165 (168)
Q Consensus 103 Lves~~KK~~FL~~~~~~L~-L~~~-vi~~r~e~~~~~-~~~~d~v~sR----A~a~l~~ll~~~~pllk 165 (168)
.+|+++|--.|+..-+++-. ++.+ .+.+..|++++. ..+||+|+.- .+.+.-+.+.-...+|+
T Consensus 104 ~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR 173 (252)
T KOG4300 104 CLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR 173 (252)
T ss_pred EECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 8678487999999888642572057778505210742136771157778887205779999999887508
No 69
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=96.48 E-value=0.0015 Score=41.29 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=67.1
Q ss_pred HHHHHHHHHH-HHHHCC----CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHH----HHCC-
Q ss_conf 9898646356-431001----23443111114677335656522755466347875000038999999999----7389-
Q gi|254780807|r 54 FWIRHVEDSL-RVFQLH----PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQ----KTAA- 123 (168)
Q Consensus 54 ~~~rHi~DSl-~~~~~~----~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~----~L~L- 123 (168)
-+.|++.+.| +.++.. ..+.+|+|+|+|.|+=-=-++=.+|..+ ++++|-......+.++... ..+.
T Consensus 14 ~~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~---~~a~D~~~~ml~~a~~~~~~GWW~~~~~ 90 (272)
T TIGR02072 14 KIQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAE---LIALDISEEMLAQAKEKLSEGWWQKNLK 90 (272)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCE---EHHHHCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 9999999999998874076544554356512685489999998688001---2333325678999997446788657604
Q ss_pred CCEEEECHHHHHHHCCCC--CCEEEECCC
Q ss_conf 809980426653312479--869999147
Q gi|254780807|r 124 RGKVFACRIQEAPQMITT--CDVISARAL 150 (168)
Q Consensus 124 ~~~vi~~r~e~~~~~~~~--~d~v~sRA~ 150 (168)
++..+++.+|.++-...+ ||+|+|=+.
T Consensus 91 ~~~f~~gD~E~l~~~~~~~~~DLI~Sn~a 119 (272)
T TIGR02072 91 AVQFICGDIEKLPLEDSSFKFDLIVSNLA 119 (272)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEHHHHHHH
T ss_conf 56666637771788766303412756358
No 70
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=96.09 E-value=0.033 Score=33.60 Aligned_cols=70 Identities=13% Similarity=-0.109 Sum_probs=53.3
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHH----HCCCCCCEEE
Q ss_conf 4311111467733565652275546634787500003899999999973898--099804266533----1247986999
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAP----QMITTCDVIS 146 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~----~~~~~~d~v~ 146 (168)
..++|.++|+|==.|.+|-. ..+|+.||.+.+++...++-++..|.. .+.+++...++. ....+||+|+
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~-----~~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf 76 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANV-----FCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVF 76 (165)
T ss_pred CEEEECCCCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEE
T ss_conf 79999377807999999975-----8989999798999999999899839873179997759999788763588755899
Q ss_pred E
Q ss_conf 9
Q gi|254780807|r 147 A 147 (168)
Q Consensus 147 s 147 (168)
+
T Consensus 77 ~ 77 (165)
T pfam09445 77 L 77 (165)
T ss_pred E
T ss_conf 7
No 71
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.06 E-value=0.024 Score=34.32 Aligned_cols=86 Identities=15% Similarity=0.065 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH
Q ss_conf 9864635643100123443111114677335656522755466347875000038999999999738980-998042665
Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE 134 (168)
Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~ 134 (168)
..-+...|.. .+ .+.+|+|+=+|.|-=|+= |+- ....+|+.||.+.+-+..++.-+.+++.++ .+++..+..
T Consensus 40 REalFn~L~~--~i-~~~~vLDLFAGSGalGlE-ALS---RGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~ 112 (198)
T PRK10909 40 RETLFNWLAP--VI-VDARCLDCFAGSGALGLE-ALS---RYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALS 112 (198)
T ss_pred HHHHHHHHHH--HC-CCCEEEECCCCCCHHHHH-HHH---CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 9999987576--42-998799827774688999-998---7997899997899999999999998488867999556999
Q ss_pred -HHHCCCCCCEEEEC
Q ss_conf -33124798699991
Q gi|254780807|r 135 -APQMITTCDVISAR 148 (168)
Q Consensus 135 -~~~~~~~~d~v~sR 148 (168)
+.....+||+|.+=
T Consensus 113 ~L~~~~~~fDlIF~D 127 (198)
T PRK10909 113 FLAQPGTPHNVVFVD 127 (198)
T ss_pred HHHCCCCCEEEEEEC
T ss_conf 862559952189989
No 72
>KOG1271 consensus
Probab=96.03 E-value=0.026 Score=34.17 Aligned_cols=114 Identities=9% Similarity=0.205 Sum_probs=71.0
Q ss_pred HHHHHHHHHCCCCCEEEE----CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHH
Q ss_conf 999999984632130430----8999998986463564310012344311111467733565652275546634787500
Q gi|254780807|r 31 YFYFLFLKWSKKINLVSS----STVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIES 106 (168)
Q Consensus 31 ~y~~ll~~~N~~~NLts~----~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves 106 (168)
.|..+|..+. .++=+|- .+.++....-..|+..+.+.-++..+++|+|||.|. +.........+. .++-+|-
T Consensus 24 ~Y~~El~Nfr-~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~--~L~~L~~egf~~-~L~GvDY 99 (227)
T KOG1271 24 AYELELTNFR-EHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGH--LLFQLAKEGFQS-KLTGVDY 99 (227)
T ss_pred HHHHHHHHCC-CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHH--HHHHHHHHCCCC-CCCCCCC
T ss_conf 9999986036-67876335607738999999998654441102243211661579618--899988713888-8645315
Q ss_pred HHHHHHHHHHHHHHHCCCCEE--EECHHHHHHHCCCCCCEEEEC
Q ss_conf 003899999999973898099--804266533124798699991
Q gi|254780807|r 107 KNKKASFLRYVVQKTAARGKV--FACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 107 ~~KK~~FL~~~~~~L~L~~~v--i~~r~e~~~~~~~~~d~v~sR 148 (168)
++|-+..-+++++.-+..+.| -...+-.-.....+||+|.-+
T Consensus 100 s~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271 100 SEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEC
T ss_conf 78899999878875278853168873225775555432389605
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=95.96 E-value=0.074 Score=31.56 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCC------CCEEEEEHHHHHHHHHHHHHHHHHC-
Q ss_conf 999998986463564310012344311111467733565652275546------6347875000038999999999738-
Q gi|254780807|r 50 TVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIE------GGLVNLIESKNKKASFLRYVVQKTA- 122 (168)
Q Consensus 50 ~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~------~~~v~Lves~~KK~~FL~~~~~~L~- 122 (168)
-.+..|.+-.++.+....-.+.+.+++|+=||.|==.+-++=..|+++ ...||++|.+.+--+--++=....+
T Consensus 22 G~h~~Wr~~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r 101 (242)
T TIGR01934 22 GLHRLWRRRAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEER 101 (242)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 43289999999987862368888977887238399999998635755533577633789870798899999874134200
Q ss_pred --C--CCEEEECHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHHHHHCCC
Q ss_conf --9--809980426653312479869999----14799899999848852067
Q gi|254780807|r 123 --A--RGKVFACRIQEAPQMITTCDVISA----RALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 123 --L--~~~vi~~r~e~~~~~~~~~d~v~s----RA~a~l~~ll~~~~pllk~k 167 (168)
+ +.+-+++.|+++|=....||.+|. |=|....+=|+=..+=||+.
T Consensus 102 ~~~~~~~~f~~~dA~~LPF~D~sFD~~TiaFGlRN~~d~~~aL~E~~RVLKpg 154 (242)
T TIGR01934 102 KALSANVSFIEADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPG 154 (242)
T ss_pred HHHHCCCHHEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 33321642110005508799862444664025547468678987731101889
No 74
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.086 Score=31.16 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=61.5
Q ss_pred HHHHHHHC--CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHH
Q ss_conf 35643100--123443111114677335656522755466347875000038999999999738980--99804266533
Q gi|254780807|r 61 DSLRVFQL--HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAP 136 (168)
Q Consensus 61 DSl~~~~~--~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~ 136 (168)
||.++... +..+.+++|.|||+|+=...||-+... .++|+.+|.+.-....-++-.++.++.+ +...+.+-+..
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~--~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGP--EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 7999998709998878998156805999999996488--84599999527899999999998424561378705400024
Q ss_pred HCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 1247986999914799899999848
Q gi|254780807|r 137 QMITTCDVISARALADLDTLLEYSF 161 (168)
Q Consensus 137 ~~~~~~d~v~sRA~a~l~~ll~~~~ 161 (168)
. ...||.|+--=-.||..+=....
T Consensus 160 ~-~~~vDav~LDmp~PW~~le~~~~ 183 (256)
T COG2519 160 D-EEDVDAVFLDLPDPWNVLEHVSD 183 (256)
T ss_pred C-CCCCCEEEECCCCHHHHHHHHHH
T ss_conf 6-55467799758984899999998
No 75
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.85 E-value=0.0065 Score=37.66 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=51.8
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 43111114677335656522755466347875000038999999999738980-99804266533124798699991
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
+.+.|+|+|.|.=+++-|=. ..+|..+|...|+.+...+-+.--|++| +|+.+.+-+.. .++.|+|.|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-----A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--fe~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-----AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--FENADVVICE 103 (252)
T ss_pred HCEEECCCCCCHHHHHHHHH-----HCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCC--CCCCCEEHHH
T ss_conf 10563468863288988753-----2027887418078777650577788764689805532133--2345340877
No 76
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.85 E-value=0.015 Score=35.49 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=56.9
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC-
Q ss_conf 2344311111467733565652275546634787500003899999999973898099804266533124798699991-
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR- 148 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR- 148 (168)
+.+.+++|||+|-| |+.+-.+. .-+..||-+-.+..-..+.++-++ +|+++|... +..+..++||-|+|=
T Consensus 166 ~~G~~VLeIGcGWG--gla~~aA~--~~g~~VtgiTlS~eQ~~~a~~r~~--gl~v~v~l~---DYRd~~g~fD~IvSIe 236 (383)
T PRK11705 166 KPGMRVLDIGCGWG--GLARYAAE--HYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQ---DYRDLNGQFDRIVSVG 236 (383)
T ss_pred CCCCEEEEECCCHH--HHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHC--CCCCEEEEC---CHHHCCCCCCEEEEEE
T ss_conf 99997988578749--99999999--749759998588999999999973--898789971---5244367735599971
Q ss_pred ---CC--CCHHHHHHHHHHHHCCC
Q ss_conf ---47--99899999848852067
Q gi|254780807|r 149 ---AL--ADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 149 ---A~--a~l~~ll~~~~pllk~k 167 (168)
|| .-++...+-+..+||+.
T Consensus 237 M~EhVG~~~~~~yF~~i~~lLkp~ 260 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVDRCLKPD 260 (383)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 486528777999999999856999
No 77
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.76 E-value=0.037 Score=33.32 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=56.7
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH-HHC--CCCCCEEE
Q ss_conf 443111114677335656522755466347875000038999999999738980-9980426653-312--47986999
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA-PQM--ITTCDVIS 146 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~-~~~--~~~~d~v~ 146 (168)
...++|||+|.|=-=+-+|..+|+.. +..+|...+.+.=+-.-+.+.+++| .++++.+.++ ... ...+|-|.
T Consensus 55 ~p~~lEIGfG~G~~l~~~A~~~P~~~---fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~ 130 (229)
T PRK00121 55 APIHLEIGFGRGEFLVEMAKANPDIN---FIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIY 130 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCC---EEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEE
T ss_conf 94399961589699999998688886---89999616999999999998299838988347899999714645414046
No 78
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=95.71 E-value=0.017 Score=35.20 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHH-HHHHHCCC--CCCC-CEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 635-64310012--3443-1111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r 60 EDS-LRVFQLHP--YPSI-WIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA 135 (168)
Q Consensus 60 ~DS-l~~~~~~~--~~~~-ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~ 135 (168)
-|| +.+..-+. +++. |+-||+|.|| +||.........++.+|-++=-+..+++-+.-.+-+..++.+.+-+-
T Consensus 6 EDse~LL~~nL~~~k~ddeVlEiG~GtGl----vair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf~~ 81 (183)
T TIGR00537 6 EDSELLLEANLRELKPDDEVLEIGAGTGL----VAIRLKEKGKKKILTTDINPFAVKLLRENAKLNNVELDVLETDLFEG 81 (183)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCCCC
T ss_conf 45589999986751699528997168048----99998515882078863687999987731000266404761113578
Q ss_pred HHCCC-CCCEEE
Q ss_conf 31247-986999
Q gi|254780807|r 136 PQMIT-TCDVIS 146 (168)
Q Consensus 136 ~~~~~-~~d~v~ 146 (168)
.+. +||+|.
T Consensus 82 --v~geKFdviL 91 (183)
T TIGR00537 82 --VRGEKFDVIL 91 (183)
T ss_pred --CCCCCEEEEE
T ss_conf --5555102773
No 79
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.68 E-value=0.065 Score=31.86 Aligned_cols=72 Identities=13% Similarity=0.015 Sum_probs=56.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH-HCCCCCCEEEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533-12479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP-QMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~-~~~~~~d~v~s 147 (168)
.+.+++|+-+|.|.=|++||-- ...|..||.++--+.-.++-++..+++| +.+.+.+++.. ....++|+|+-
T Consensus 233 ~~~~vlDlycG~G~~sl~lA~~-----~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvv 306 (375)
T PRK03522 233 PPKSMWDLFCGVGGFGLHCATP-----DMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLV 306 (375)
T ss_pred CCCEEEEECCCCCHHHHHHHHC-----CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 8978999657853888987641-----7889999845999999999999869987699973778887634568978998
No 80
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=95.61 E-value=0.032 Score=33.68 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=46.5
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE--EECHHHHHHHCCCCCCEEEE-C
Q ss_conf 44311111467733565652275546634787500003899999999973898099--80426653312479869999-1
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKV--FACRIQEAPQMITTCDVISA-R 148 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~v--i~~r~e~~~~~~~~~d~v~s-R 148 (168)
+.+++|+|||.|-=-....=.+|+++ .+++||++.--...-+.+.+.......+ ....... .....++|+|++ -
T Consensus 35 P~slLD~GsGpGt~~wAa~~~w~~l~--~~~~vd~s~~m~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~DLVi~sy 111 (275)
T pfam09243 35 PLSHLDVGAGPGTALWAASELWPGLE--PATVIDASEAALAIGEELARHIPALKHAWRARDVIGA-ALDFEPADLVTISY 111 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE--EEEEECCCHHHHHHHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCEEEEEC
T ss_conf 87577727757999999998842476--8999748999999999998518434543111431011-24589878899614
Q ss_pred CCCCH
Q ss_conf 47998
Q gi|254780807|r 149 ALADL 153 (168)
Q Consensus 149 A~a~l 153 (168)
.+.++
T Consensus 112 ~L~El 116 (275)
T pfam09243 112 VLDEL 116 (275)
T ss_pred HHCCC
T ss_conf 22079
No 81
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=95.59 E-value=0.046 Score=32.74 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=48.1
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-CCCC-EEEECHHHHH
Q ss_conf 44311111467733565652275546634787500003899999999973-8980-9980426653
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT-AARG-KVFACRIQEA 135 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L-~L~~-~vi~~r~e~~ 135 (168)
..-++|||+|.|=-=+-+|..+|+.. +..+|...+.+.-+..-+.++ +|+| .++++.++++
T Consensus 21 ~pi~lEIG~G~G~~l~~~A~~~p~~n---~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~ 83 (199)
T pfam02390 21 QPLFLEIGCGMGDFLVAMAKKNPDKL---FIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKL 83 (199)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCC---EEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHH
T ss_conf 94499973688899999999789987---8999950599999999999845777378760479999
No 82
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=95.58 E-value=0.046 Score=32.71 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEE-ECHHH
Q ss_conf 89864635643100123443111114677335656522755466347875000038999999999738980998-04266
Q gi|254780807|r 55 WIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVF-ACRIQ 133 (168)
Q Consensus 55 ~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi-~~r~e 133 (168)
...-+.+.|+-. +.-.+..++|+=+|.|-=|+ =|+= ....+|++||.+.+-+..++.-++.++.++.++ .....
T Consensus 28 vrEalFniL~~~-~~i~~~~~LDLFaGSGslgl-EAlS---RGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~ 102 (181)
T pfam03602 28 VREALFNILAPY-FELGGARVLDLFAGSGALGL-EALS---RGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAAR 102 (181)
T ss_pred HHHHHHHHHCCC-CCCCCCEEEECCCCCCHHHH-HHHH---CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 999999750134-55489879982787269899-9997---699889999699999999999999858997799810899
Q ss_pred HH---HHCCCCCCEEEEC
Q ss_conf 53---3124798699991
Q gi|254780807|r 134 EA---PQMITTCDVISAR 148 (168)
Q Consensus 134 ~~---~~~~~~~d~v~sR 148 (168)
.+ .....+||+|.+=
T Consensus 103 ~~~~~~~~~~~fdiIF~D 120 (181)
T pfam03602 103 ALLRLAGKGPPFDLVFLD 120 (181)
T ss_pred HHHHHCCCCCCCCEEECC
T ss_conf 998753357888766359
No 83
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.56 E-value=0.13 Score=30.21 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=76.8
Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCE
Q ss_conf 00123443111114677335656522755466347875000038999999999738980--9980426653312479869
Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDV 144 (168)
Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~ 144 (168)
.....+..++|.=+|-|-=.||+|-. ....|+.+|-+.--+.+|++-++..++++ +++++.+.++......+|-
T Consensus 184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~----g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 184 ELVKEGETVLDMFAGVGPFSIPIAKK----GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCE
T ss_conf 63069988998357865401246654----78639999459899999999998557655156796648885020466788
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 99914799899999848852067
Q gi|254780807|r 145 ISARALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 145 v~sRA~a~l~~ll~~~~pllk~k 167 (168)
|+.=-+.....+++.+...++..
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k~~ 282 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLKDG 282 (341)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 98389872023389999985148
No 84
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=95.54 E-value=0.005 Score=38.28 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=54.0
Q ss_pred HHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCC--C-----CEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 3564310012344311111467733565652275546--6-----34787500003899999999973898099804266
Q gi|254780807|r 61 DSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIE--G-----GLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ 133 (168)
Q Consensus 61 DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~--~-----~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e 133 (168)
|=-.++..++.+++|+|+|+|-| -.|+.+..+++ + .++.-||-.+.- +-.++.+ |+ .||++.+|
T Consensus 3 Dl~~I~~~Ip~GSRVLDLGCGdG---~LL~~L~d~k~v~GPPttehRL~G~Eid~~~---v~Ac~~R-Gv--~VIq~Dld 73 (205)
T TIGR02081 3 DLELILDLIPPGSRVLDLGCGDG---ELLALLRDEKQVRGPPTTEHRLYGIEIDQDG---VLACVAR-GV--SVIQGDLD 73 (205)
T ss_pred HHHHHHHHCCCCCEEEEECCCCH---HHHHHHHHHCCCCCCCCCCCEEEEEEECHHH---HHHHHHC-CC--CEECCCCC
T ss_conf 57889861688873641016887---8999999743789888712000102345445---9999862-52--01300600
Q ss_pred H-HHHC-CCCCCEEE----ECCCCCHHHHHH
Q ss_conf 5-3312-47986999----914799899999
Q gi|254780807|r 134 E-APQM-ITTCDVIS----ARALADLDTLLE 158 (168)
Q Consensus 134 ~-~~~~-~~~~d~v~----sRA~a~l~~ll~ 158 (168)
+ ++.+ ..+||+|+ =-|+-.+..+|.
T Consensus 74 ~GL~~F~D~~FD~ViLsQTLQa~~Np~~iL~ 104 (205)
T TIGR02081 74 EGLEAFPDKSFDYVILSQTLQATRNPEEILD 104 (205)
T ss_pred CCCCCCCCCCCCEEEECHHHHHHHCHHHHHH
T ss_conf 3401167887662542135664225689998
No 85
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=95.40 E-value=0.14 Score=29.98 Aligned_cols=72 Identities=14% Similarity=0.006 Sum_probs=55.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH-HHH---CCCCCCEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665-331---24798699
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE-APQ---MITTCDVI 145 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~-~~~---~~~~~d~v 145 (168)
.+.+++|+=+|.|.-|++||=- ...|+.||++.--+...+.-++..+++| +.+++++++ +.. ...++|.|
T Consensus 294 ~~~~VlDLYcGvGtfsl~LA~~-----~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~v 368 (440)
T PRK13168 294 PGDRVLDLFCGLGNFTLPLARQ-----AAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKV 368 (440)
T ss_pred CCCEEEEEECCCCCCCHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEE
T ss_conf 8988998623856211113530-----67688760579999999999997499987899746456635578637999989
Q ss_pred EE
Q ss_conf 99
Q gi|254780807|r 146 SA 147 (168)
Q Consensus 146 ~s 147 (168)
+-
T Consensus 369 i~ 370 (440)
T PRK13168 369 LL 370 (440)
T ss_pred EE
T ss_conf 99
No 86
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.32 E-value=0.076 Score=31.49 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=58.8
Q ss_pred CCCEEECCCCCHHHHHHHHCCC--CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHH-HHHCCC-CCCEEE
Q ss_conf 4311111467733565652275--5466347875000038999999999738980--998042665-331247-986999
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLS--SIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQE-APQMIT-TCDVIS 146 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p--~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~-~~~~~~-~~d~v~ 146 (168)
..++|+|+|.|.-++.++..+| +.. +..+|.........+.-..+.+++. ..+..+.-+ ...... ++|.++
T Consensus 128 ~~~~d~~~g~g~~~~~~~~~~~pc~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 204 (311)
T TIGR00536 128 LHILDLGTGSGCIALALAYEFPPCNAE---VIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKLDLLV 204 (311)
T ss_pred CHHHHCCCCCHHHHHHHHHCCCCCCCE---EEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEEE
T ss_conf 011101456315666554304666622---66411223678888876776432012001011244433203665223664
Q ss_pred EC
Q ss_conf 91
Q gi|254780807|r 147 AR 148 (168)
Q Consensus 147 sR 148 (168)
+.
T Consensus 205 ~~ 206 (311)
T TIGR00536 205 SN 206 (311)
T ss_pred CC
T ss_conf 58
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.17 E-value=0.11 Score=30.46 Aligned_cols=76 Identities=13% Similarity=-0.023 Sum_probs=53.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH--CCCCCCEEEEC
Q ss_conf 3443111114677335656522755466347875000038999999999738980998042665331--24798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQ--MITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~--~~~~~d~v~sR 148 (168)
.+.+|+|+.+|.|==..-|+=+.++ ..|+.+|.+.+|..-+++-.+++|+++.+....+....+ ...+||.|..=
T Consensus 245 ~g~~VLD~CAaPGGKt~~la~~~~~---~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILlD 321 (428)
T PRK10901 245 NGEHILDLCAAPGGKTTHILEVAPE---AQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 321 (428)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEEC
T ss_conf 8987987168876689999996458---9289996988899999999997599739997765572331344567879975
Q ss_pred C
Q ss_conf 4
Q gi|254780807|r 149 A 149 (168)
Q Consensus 149 A 149 (168)
|
T Consensus 322 a 322 (428)
T PRK10901 322 A 322 (428)
T ss_pred C
T ss_conf 8
No 88
>KOG1501 consensus
Probab=94.79 E-value=0.027 Score=34.08 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHC-CCCCCEEEECC
Q ss_conf 431111146773356565227554663478750000389999999997389--809980426653312-47986999914
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQM-ITTCDVISARA 149 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~-~~~~d~v~sRA 149 (168)
..++|||||.|+-.+--+=+- +-.||.+|.-.--+...+++..+.+. +.++|+.|..++... ....|+++ |+
T Consensus 68 v~vLdigtGTGLLSmMAvrag----aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v-~e 142 (636)
T KOG1501 68 VFVLDIGTGTGLLSMMAVRAG----ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAV-RE 142 (636)
T ss_pred EEEEECCCCCCHHHHHHHHHC----CCEEEEEHHHCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCHHHHHH-HH
T ss_conf 899972688108999988735----7707752122218999999884188765226620366315555762444345-76
Q ss_pred C
Q ss_conf 7
Q gi|254780807|r 150 L 150 (168)
Q Consensus 150 ~ 150 (168)
+
T Consensus 143 ~ 143 (636)
T KOG1501 143 D 143 (636)
T ss_pred H
T ss_conf 6
No 89
>KOG2793 consensus
Probab=94.74 E-value=0.081 Score=31.30 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=32.3
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC
Q ss_conf 3443111114677335656522755466347875000038999999999738
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA 122 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~ 122 (168)
+..+++-+|||.|++|+..|+.... .|.+ .-..+....|.+....-+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~----~v~l-tD~~~~~~~L~~~~~~~~ 132 (248)
T KOG2793 86 KYINVLELGSGTGLVGILAALLLGA----EVVL-TDLPKVVENLKFNRDKNN 132 (248)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCC----EECC-CCCHHHHHHHHHHHHHHH
T ss_conf 6405899668755899999987366----4512-775026788888665656
No 90
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=94.56 E-value=0.15 Score=29.76 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=55.7
Q ss_pred CEEEECCHHHHHHHHHHHHHHHHHC-CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-
Q ss_conf 3043089999989864635643100-12344311111467733565652275546634787500003899999999973-
Q gi|254780807|r 44 NLVSSSTVEDFWIRHVEDSLRVFQL-HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT- 121 (168)
Q Consensus 44 NLts~~~~~~~~~rHi~DSl~~~~~-~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L- 121 (168)
.|+-.=.-.--|..++.|-|.-... .+.+-+.+||||||-. +..++--..-+.++...|-..+-+..-+..+...
T Consensus 37 ~LcP~iP~R~nYIh~l~DLL~~~~~~~~~~v~gLDIGtGAsc---IYPLLg~~~y~W~fvgtDId~~sl~~A~~nv~~N~ 113 (254)
T pfam05971 37 FLCPPVPGRADYIHWVADLLGHQDSDIPTLRRALDIGTGANC---IYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANP 113 (254)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHH---HHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 838999868899999999975427887777467773366415---77754040048637976279899999999998583
Q ss_pred CCCC--EEEECH-HHHH----HHCCCCCCEEEE
Q ss_conf 8980--998042-6653----312479869999
Q gi|254780807|r 122 AARG--KVFACR-IQEA----PQMITTCDVISA 147 (168)
Q Consensus 122 ~L~~--~vi~~r-~e~~----~~~~~~~d~v~s 147 (168)
+|+. ++.... -..+ ....+.||+.++
T Consensus 114 ~L~~~I~l~~q~~~~~if~gii~~~e~fdftmC 146 (254)
T pfam05971 114 NLSDAIELRRQPQSTLIFNGLIGENERYDFTLC 146 (254)
T ss_pred CCHHCEEEEECCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 323116999637811022344687660666303
No 91
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.30 E-value=0.15 Score=29.80 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=51.5
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHH
Q ss_conf 431111146773356565227554663478750000389999999997389-80998042665331
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQ 137 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~ 137 (168)
..+++||+|.|===+=+|-.+|+.. +..||....-+.-+-.-+.+.++ |..+++.++.++-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n---fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~ 112 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN---FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD 112 (227)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCC---EEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 6699968889878999998789877---89999734899999999998299846998077999997
No 92
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.84 E-value=0.094 Score=30.93 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=37.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533124798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
.+++|+|+|||+|+|+|.-|-. ....|...|--.--..-++.-++..+.+..+.+... .. ....||++.+-
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a----GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~--~g-~~~~~Dl~Lag 149 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA----GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL--IG-SPPAFDLLLAG 149 (218)
T ss_pred CCCEEEECCCCCCHHHHHHHHH----HHHHHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCC--CC-CCCCEEEEEEE
T ss_conf 3653244156667088999985----037887627884788885306221562167743133--68-98640389850
No 93
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=93.71 E-value=0.15 Score=29.85 Aligned_cols=74 Identities=19% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH-HHH-CCCC
Q ss_conf 43100123443111114677335656522755466347875000038999999999738980998042665-331-2479
Q gi|254780807|r 64 RVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE-APQ-MITT 141 (168)
Q Consensus 64 ~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~-~~~-~~~~ 141 (168)
.+...++.+++|+|+|.|.|- .++.+... ++..++-+|-...++ ..++++ ++ .|+.+.+++ +.. ....
T Consensus 6 iI~~~I~~~srVLDlGCG~G~---ll~~L~~~-k~v~~~GvEid~~~v---~~a~~k-g~--~Vi~~D~d~~l~~f~d~s 75 (193)
T pfam07021 6 YIARLIPPGSRVLDLGCGDGS---LLYLLQEE-KQVDGRGIELDAAGV---AECVAK-GL--SVIQGDADKGLEHFPDKS 75 (193)
T ss_pred HHHHHCCCCCEEEEECCCCCH---HHHHHHHC-CCCCEEEECCCHHHH---HHHHHC-CC--CEECCCHHHCHHHCCCCC
T ss_conf 999865896989983688989---99999876-698769833899999---999864-79--545077445974577678
Q ss_pred CCEEEE
Q ss_conf 869999
Q gi|254780807|r 142 CDVISA 147 (168)
Q Consensus 142 ~d~v~s 147 (168)
||+|+.
T Consensus 76 FD~VIl 81 (193)
T pfam07021 76 FDYVIL 81 (193)
T ss_pred CCEEEH
T ss_conf 037869
No 94
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=93.54 E-value=0.38 Score=27.42 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH
Q ss_conf 443111114677335656522755466347875000038999999999738980-9980426653
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA 135 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~ 135 (168)
+..++|+=+|.|.=|++||=. ...|..||.++.-+.-.++-++..+++| +.+++.+|++
T Consensus 208 ~~~vlDLYcG~Gtfsl~LA~~-----~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~ 267 (363)
T PRK05031 208 KGDLLELYCGNGNFTLALARN-----FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 267 (363)
T ss_pred CCCEEEEECCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 982898605866426998862-----687999953899999999999986998649996589999
No 95
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=93.38 E-value=0.55 Score=26.50 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCC---CCCCEEECCCCC--HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999989864635643100123---443111114677--3356565227554663478750000389999999997389
Q gi|254780807|r 49 STVEDFWIRHVEDSLRVFQLHPY---PSIWIDLGSGGG--FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA 123 (168)
Q Consensus 49 ~~~~~~~~rHi~DSl~~~~~~~~---~~~ilDiGSGaG--fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L 123 (168)
...+-.-.+.++..+..- ..+. ....+|.|+|=| =-++.+..+ ..|.|||+.++ |+..+...++-
T Consensus 31 s~~Di~gS~~FL~~l~~~-~~~~~~~~~~alDcGAGIGRVTk~lL~~~f------~~VDlVEpv~~---Fl~~ak~~l~~ 100 (217)
T pfam05891 31 SDIDINGSRNFLRRLLRE-RLPGKRRHLVALDCGAGIGRVTKNLLLPLF------SKVDLVEPVED---FLAKAKEYLAE 100 (217)
T ss_pred CHHHHHHHHHHHHHHHHC-CCCCCCCCCEEEECCCCCCEECHHHHHHHC------CEEEEECCCHH---HHHHHHHHHHH
T ss_conf 878898899999998644-388877632665426763611266788754------81357544499---99999998740
Q ss_pred ---C-CEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf ---8-099804266533124798699991
Q gi|254780807|r 124 ---R-GKVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 124 ---~-~~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
. ..+++.-.|++.+...+||+|.+.
T Consensus 101 ~~~~~~~~~~~gLQdf~P~~~~YD~IW~Q 129 (217)
T pfam05891 101 EKKKVGNFFCVGLQDFTPEEGRYDLIWIQ 129 (217)
T ss_pred CCCCCCEEEECCCCCCCCCCCEEEEEEEH
T ss_conf 37976538973610168999817699805
No 96
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=93.18 E-value=0.56 Score=26.49 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=57.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH--HCCCCCCEEEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533--12479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP--QMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~--~~~~~~d~v~s 147 (168)
.+..|+|.-+|.|=-..-+|-..++. +.++.+|.+.+|+.-|+....++|+.+ .+.+....+.. .....||.|..
T Consensus 84 ~g~~VLD~CAaPGgKt~~la~l~~~~--g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~fD~vLv 161 (277)
T pfam01189 84 EDEFILDMCAAPGGKTTHIAELMKNE--GTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRILL 161 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 99989883678881699999875898--7799837978999999999997599747999664445574346666657997
Q ss_pred CC
Q ss_conf 14
Q gi|254780807|r 148 RA 149 (168)
Q Consensus 148 RA 149 (168)
-|
T Consensus 162 Da 163 (277)
T pfam01189 162 DA 163 (277)
T ss_pred CC
T ss_conf 28
No 97
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=92.36 E-value=0.67 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH
Q ss_conf 443111114677335656522755466347875000038999999999738980-9980426653
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA 135 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~ 135 (168)
+..++|+=+|.|.=|+++|=- ...|..||.+.--+.-.++-++..+++| +.+...+|++
T Consensus 198 ~~~vlDlYcG~Gtfsl~lA~~-----~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~ 257 (353)
T pfam05958 198 KGDLLELYCGNGNFSLALAQN-----FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CCCEEEEECCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 995899846888888999864-----787999962599999999989986998649997289999
No 98
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.33 E-value=0.74 Score=25.78 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=56.8
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCC---CCCCEEEE
Q ss_conf 443111114677335656522755466347875000038999999999738980-99804266533124---79869999
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMI---TTCDVISA 147 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~---~~~d~v~s 147 (168)
+.+++|.=+|.|-=|+++| .+...|+.+|-+.--+...++.++.++++| +.+...+|++.... ..+|.|+-
T Consensus 294 ~~~vlDlYCGvG~f~l~lA-----~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLA-----KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred CCEEEECCCCCCHHHHHHC-----CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEE
T ss_conf 9779993558870135531-----24657999964899999999999973988779995868888651002579998998
No 99
>KOG1540 consensus
Probab=92.25 E-value=1 Score=25.01 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCC--CC---CCCCEE
Q ss_conf 9999999999984632130430899999898646356431001234431111146773356565227--55---466347
Q gi|254780807|r 27 EKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQL--SS---IEGGLV 101 (168)
Q Consensus 27 ~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~--p~---~~~~~v 101 (168)
..++.++.-.---|..+-|- .-.+|.-++++-+... .+-+++|++-|.|.-. +.|.. ++ ....+|
T Consensus 64 ~vF~~vA~~YD~mND~mSlG----iHRlWKd~~v~~L~p~----~~m~~lDvaGGTGDia--Fril~~v~s~~~~~~~~V 133 (296)
T KOG1540 64 HVFESVAKKYDIMNDAMSLG----IHRLWKDMFVSKLGPG----KGMKVLDVAGGTGDIA--FRILRHVKSQFGDRESKV 133 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHCCCCC----CCCEEEEECCCCCHHH--HHHHHHHCCCCCCCCCEE
T ss_conf 99998888887788876212----3678888766215877----7875898347752567--779876113457777617
Q ss_pred EEEHHHHHHHHHHHHHHHHHCC--C--CEEEECHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHHHHHCC
Q ss_conf 8750000389999999997389--8--09980426653312479869999----1479989999984885206
Q gi|254780807|r 102 NLIESKNKKASFLRYVVQKTAA--R--GKVFACRIQEAPQMITTCDVISA----RALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 102 ~Lves~~KK~~FL~~~~~~L~L--~--~~vi~~r~e~~~~~~~~~d~v~s----RA~a~l~~ll~~~~pllk~ 166 (168)
+.+|-++--.+--++=..+.++ + ...+++.+|+++=....||..|. |-+..+.+-+.-+.+-||.
T Consensus 134 ~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKp 206 (296)
T KOG1540 134 TVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKP 206 (296)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEECCCCHHHHHHHHHHHCCC
T ss_conf 9993898999999877751597768716999477010899977511588842111478778999999875277
No 100
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.07 E-value=0.98 Score=25.06 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHH-HHCCC--CCCEE
Q ss_conf 34431111146773356565227554663478750000389999999997389--809980426653-31247--98699
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEA-PQMIT--TCDVI 145 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~-~~~~~--~~d~v 145 (168)
.+.+++|+=+|.|-=|+= |+- .....+++||++.+-+.-+++-++.|++ ++.++...+... ++... +||+|
T Consensus 43 ~g~~~LDlFAGSGaLGlE-AlS---RGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 43 EGARVLDLFAGSGALGLE-ALS---RGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCCEEEEECCCCCHHHHH-HHH---CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEE
T ss_conf 798899946876476899-985---7885699996598999999999998487612599840089998722778851289
Q ss_pred EE
Q ss_conf 99
Q gi|254780807|r 146 SA 147 (168)
Q Consensus 146 ~s 147 (168)
..
T Consensus 119 fl 120 (187)
T COG0742 119 FL 120 (187)
T ss_pred EE
T ss_conf 96
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=91.98 E-value=0.9 Score=25.26 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=55.0
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 12344311111467733565652275546634787500003899999999973898-09980426653312479869999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
.....+++-+|+.-|+==..|.-++|+.+ .+.||-+++-+.-++. .+. ..|.++.+.+. ....+||.|.+
T Consensus 41 ~~~ikSilE~GcNIGlNL~ALk~L~P~~~---l~gIEIN~~A~~~lk~-----~~~~~~i~n~SIld~-~~~~~~DLv~t 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKH---IYGVEINEYAVEKAKA-----YLPNINIIQGSLFDP-FKDNFFDLVLT 111 (204)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHH-----HCCCCEEEECCCCCC-CCCCCEEEEEE
T ss_conf 78888268966884776999987487440---4999539999999986-----589726996533466-77874238998
Q ss_pred CCC
Q ss_conf 147
Q gi|254780807|r 148 RAL 150 (168)
Q Consensus 148 RA~ 150 (168)
-.|
T Consensus 112 ~GV 114 (204)
T TIGR03587 112 KGV 114 (204)
T ss_pred EEE
T ss_conf 308
No 102
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=91.77 E-value=1.1 Score=24.68 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=58.6
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHH-HH-HHH-CCCCCC
Q ss_conf 1234431111146773356565227554663478750000389999999997389-80-9980426-65-331-247986
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRI-QE-APQ-MITTCD 143 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~-e~-~~~-~~~~~d 143 (168)
+..+.+|+.-|||.|.=.+.||=+ =-..++|+-+|.++.+...-++-.+..++ ++ ++.+..+ ++ +.. ....+|
T Consensus 100 i~PG~~VlEaGtGSGsLT~~Lara--vgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D 177 (309)
T pfam08704 100 LKPGSVVCESGTGSGSLSHAIART--VAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKAD 177 (309)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCC
T ss_conf 899999998367842999999997--488865999844789999999999874987505889852001366644566435
Q ss_pred EEEECCCCCHHHHHHHH
Q ss_conf 99991479989999984
Q gi|254780807|r 144 VISARALADLDTLLEYS 160 (168)
Q Consensus 144 ~v~sRA~a~l~~ll~~~ 160 (168)
.|+=-=-+||..+-...
T Consensus 178 ~VfLDlp~PW~ai~~~~ 194 (309)
T pfam08704 178 AVFLDLPAPWEAIPHAA 194 (309)
T ss_pred EEEECCCCHHHHHHHHH
T ss_conf 89975899799889999
No 103
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=91.77 E-value=1 Score=24.98 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=50.0
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEE
Q ss_conf 1234431111146773356565227554663478750000389999999997389--80998042665331247986999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVIS 146 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~ 146 (168)
+..+..|+.||.|-|- +--.++.. ..+|++||...+=+..|++-....+. +.+++++.+-... ...||.+
T Consensus 36 ~~~~d~VlEIGPG~G~--LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d--~~~~~~v- 107 (296)
T PTZ00338 36 IKPTDTVLEIGPGTGN--LTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTE--FPYFDVC- 107 (296)
T ss_pred CCCCCEEEEECCCCHH--HHHHHHHC---CCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCC--CCCCCEE-
T ss_conf 8989957996685429--99999835---89179999488999999999851445667357705053185--6411446-
Q ss_pred ECCCCCHHH
Q ss_conf 914799899
Q gi|254780807|r 147 ARALADLDT 155 (168)
Q Consensus 147 sRA~a~l~~ 155 (168)
||.+|.
T Consensus 108 ---VaNLPY 113 (296)
T PTZ00338 108 ---VANVPY 113 (296)
T ss_pred ---EECCCC
T ss_conf ---635870
No 104
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=91.53 E-value=0.66 Score=26.05 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=41.0
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 234431111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA 135 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~ 135 (168)
..+..+++||.|-|.=--. ++.. ...|+++|...+=+.+|++-... .-+.+++++.+-++
T Consensus 29 ~~~d~VlEIGPG~G~LT~~--L~~~---~~~v~aiE~D~~l~~~L~~~~~~-~~~~~ii~~D~l~~ 88 (258)
T pfam00398 29 QESDTVLEIGPGKGALTEE--LAKR---AKQVVAIEIDPRLAKRLQKKLAL-HPNVEVVHQDFLKF 88 (258)
T ss_pred CCCCEEEEECCCHHHHHHH--HHHC---CCCEEEEECCHHHHHHHHHHHCC-CCCEEEEECCHHCC
T ss_conf 9999799979962399999--9961---69479995447799999986442-89779996630105
No 105
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=91.16 E-value=0.75 Score=25.74 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE-----
Q ss_conf 431111146773356565227554663478750000389999999997389809980426653312479869999-----
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA----- 147 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s----- 147 (168)
.+++|||+|-|=--.-+|-.+. .|+..|.+..- +.-.++-|.++ +... +..+...+||+|.+
T Consensus 96 ~~LLDlGAGdG~VT~~la~~F~-----~V~aTE~S~~M----r~rL~~rgf~v--l~~~--~~~~~~~~fDvIscLNvLD 162 (265)
T pfam05219 96 VTLLDLGAGDGEITLRMAPTFE-----EVYATELSWTM----RDRLKKKNYNV--LTEI--EWQETDVNLDLILCLNLLD 162 (265)
T ss_pred CEEEEECCCCCHHHHHHHHHHC-----EEEEEECCHHH----HHHHHHCCCEE--EEEH--HCCCCCCCEEEEHHHHHHH
T ss_conf 6478835899789999997523-----58887278999----99999759868--7501--2035687445542224453
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 1479989999984885206
Q gi|254780807|r 148 RALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~l~~ll~~~~pllk~ 166 (168)
|+..|..-|-++- ..|++
T Consensus 163 Rc~~P~~LL~~i~-~~L~P 180 (265)
T pfam05219 163 RCFDPFKLLEDIH-LALAP 180 (265)
T ss_pred CCCCHHHHHHHHH-HHCCC
T ss_conf 1388699999999-72499
No 106
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=91.04 E-value=1.3 Score=24.40 Aligned_cols=139 Identities=13% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCC-CCCEEEECCHHHHHHHHH-HHHHHHHHCC-C-CCCCCEEECCCCCHHHHHHHHCCCCC
Q ss_conf 998999999999999998463-213043089999989864-6356431001-2-34431111146773356565227554
Q gi|254780807|r 21 VSRETLEKLEYFYFLFLKWSK-KINLVSSSTVEDFWIRHV-EDSLRVFQLH-P-YPSIWIDLGSGGGFPGIITSIQLSSI 96 (168)
Q Consensus 21 ls~eq~~~l~~y~~ll~~~N~-~~NLts~~~~~~~~~rHi-~DSl~~~~~~-~-~~~~ilDiGSGaGfPGi~laI~~p~~ 96 (168)
+|+.+..++..-...|.=|.+ -+.|.+++-..+ |.-.+ +|-+ ++.. + ++..|+|||.|.|+ -...++-.
T Consensus 70 ~s~G~~~~~~~~~~~L~PWRKGPf~l~~i~iD~E-W~S~~KWDR~--l~~~~pL~~~~i~DVGC~~GY--~~~~M~~~-- 142 (316)
T TIGR00452 70 LSEGEKKRILEELKALMPWRKGPFELYGIKIDSE-WRSDIKWDRV--LPHLSPLKGRTILDVGCGSGY--HLWRMLGE-- 142 (316)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC-CCCCCCHHHH--CCCCCCCCCCEEEEECCCCHH--HHHHHHHC--
T ss_conf 0101389999999862887688815764555043-0666535543--124665457778983368706--88977620--
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE--CHHHHHHHCC-CCCCEEEECCC-----CCHHHHHHHHHHHHCC
Q ss_conf 663478750000389999999997389809980--4266533124-79869999147-----9989999984885206
Q gi|254780807|r 97 EGGLVNLIESKNKKASFLRYVVQKTAARGKVFA--CRIQEAPQMI-TTCDVISARAL-----ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 97 ~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~--~r~e~~~~~~-~~~d~v~sRA~-----a~l~~ll~~~~pllk~ 166 (168)
....+.-+|+..-=..=.+.+..-++-+-.++- -=+|++.+.. ..||+|.|=.| ||++.|..+-..|+++
T Consensus 143 Gak~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~pnAFD~vFs~GVLYHRkSPLe~L~~L~~~L~~~ 220 (316)
T TIGR00452 143 GAKLLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKPNAFDTVFSLGVLYHRKSPLEHLKQLKDQLVKK 220 (316)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 782787436578999999999987242355754036702223207641203122020211557089999999998757
No 107
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=91.00 E-value=0.94 Score=25.18 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA 135 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~ 135 (168)
.+..++.||.|-|- +-..++. ....|+.+|-.++-+..|++... ..-+.+++++.+=..
T Consensus 30 ~~d~VlEIGpG~Ga--LT~~Ll~---~~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~ 88 (259)
T COG0030 30 PGDNVLEIGPGLGA--LTEPLLE---RAARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF 88 (259)
T ss_pred CCCEEEEECCCCCH--HHHHHHH---HCCEEEEEEECHHHHHHHHHHHC-CCCCEEEEECCHHCC
T ss_conf 99869997898778--8999996---06957999968899999997506-566559994724247
No 108
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=90.95 E-value=1 Score=24.95 Aligned_cols=74 Identities=11% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH-HH-HCCCCCCEEEEC
Q ss_conf 3443111114677335656522755466347875000038999999999738980998042665-33-124798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE-AP-QMITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~-~~-~~~~~~d~v~sR 148 (168)
.+++++=+| ---+-+|.+|...+.. .++.+|-..+-++|++.+++++|++.+.+.-...+ +| +...+||++++-
T Consensus 44 ~Gk~iL~vG-DDDLtSlA~al~~~p~---~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TD 119 (243)
T pfam01861 44 EGKEILVLG-DDDLTSLAAALTGLPK---RIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITD 119 (243)
T ss_pred CCCEEEEEC-CCCHHHHHHHHCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECC
T ss_conf 798799972-8618789999648985---489996758999999999997499716887410148999996167989718
No 109
>KOG3010 consensus
Probab=90.89 E-value=0.11 Score=30.58 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=53.8
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEE
Q ss_conf 0123443111114677335656522755466347875000038999999999738980--99804266533124798699
Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVI 145 (168)
Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v 145 (168)
+.+.....+|+|+|.|.-.+.+|=.+.+ |..+|.+..-..+++.--..--.+. ....+..+++.--.++.|.|
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k~-----VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI 104 (261)
T KOG3010 30 RTEGHRLAWDVGTGNGQAARGIAEHYKE-----VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLI 104 (261)
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHH-----HEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 2888645888456887114788875434-----31306879999986118986204578534566565323787641211
Q ss_pred EE-CCC--CCHHHHHHHHHHHHCCC
Q ss_conf 99-147--99899999848852067
Q gi|254780807|r 146 SA-RAL--ADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 146 ~s-RA~--a~l~~ll~~~~pllk~k 167 (168)
++ .|| =.++.+...+.+.|++.
T Consensus 105 ~~Aqa~HWFdle~fy~~~~rvLRk~ 129 (261)
T KOG3010 105 TAAQAVHWFDLERFYKEAYRVLRKD 129 (261)
T ss_pred HHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 0545677634299999999980778
No 110
>PRK06922 hypothetical protein; Provisional
Probab=90.88 E-value=0.87 Score=25.36 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=49.6
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHC--CCCCCEEEE
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312--479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQM--ITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~--~~~~d~v~s 147 (168)
.+..++|||.|||.-==.+.=-.|+. .++-+|-+..-+.-|+.-+..-+-+=.|+.+.+-+++.. .++.|.|+.
T Consensus 420 ~G~~ivdiG~GGGVMldli~E~~p~~---~i~GIDiS~NVIe~L~kkK~~e~ksW~V~~gDAL~l~d~f~~eSvdTiv~ 495 (679)
T PRK06922 420 KGDTIVDVGAGGGVMLDMIEEETEDK---RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 495 (679)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCC---CCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCEEEE
T ss_conf 47679986699621487667658998---61466660889999988777548984232143036154347566646874
No 111
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=90.72 E-value=1.5 Score=24.06 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=54.8
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEE
Q ss_conf 123443111114677335656522755466347875000038999999999738980--998042665331247986999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVIS 146 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~ 146 (168)
.+.+..++|..+|.|-=.|--|...++.. +.-+|...+-+..-+.-++..++.. .+....+.+++.....||.|+
T Consensus 26 ~~~g~~vlDP~CGSGtilIEAa~~~~~~~---~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~d~Iv 102 (171)
T pfam01170 26 WKPGDPLLDPFCGSGTILIEAALMGANVA---LYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTIV 102 (171)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCC---CEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEE
T ss_conf 99999788689987899999999613589---536758799999999999982899846999766653879878831899
Q ss_pred E
Q ss_conf 9
Q gi|254780807|r 147 A 147 (168)
Q Consensus 147 s 147 (168)
+
T Consensus 103 ~ 103 (171)
T pfam01170 103 T 103 (171)
T ss_pred E
T ss_conf 8
No 112
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=90.30 E-value=0.91 Score=25.25 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=40.2
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHH
Q ss_conf 234431111146773356565227554663478750000389999999997389-809980426653
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEA 135 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~ 135 (168)
..+..++.||.|-|. +--+++.. ..+|+++|...+-+..|++-.. +. +.+++++.+-+.
T Consensus 12 ~~~d~VlEIGPG~G~--LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~--~~~n~~ii~~D~L~~ 71 (169)
T smart00650 12 RPGDTVLEIGPGKGA--LTEELLER---AARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKF 71 (169)
T ss_pred CCCCEEEEECCCHHH--HHHHHHHH---CCCCCEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCC
T ss_conf 994979996897029--99999973---1635316378899999998641--079779995711125
No 113
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=89.90 E-value=0.57 Score=26.43 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHH--CCCC--CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-CCCC--
Q ss_conf 998986463564310--0123--44311111467733565652275546634787500003899999999973-8980--
Q gi|254780807|r 53 DFWIRHVEDSLRVFQ--LHPY--PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT-AARG-- 125 (168)
Q Consensus 53 ~~~~rHi~DSl~~~~--~~~~--~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L-~L~~-- 125 (168)
-=|..+|.|-|.... .++. .-+.+||||||-.-==.|+... -+.++...|-..+-+..-+..+... +|+.
T Consensus 95 ~nYIh~iaDLL~~~~~~~~p~g~~v~gLDIGtGAncIYPLLG~~~---ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I 171 (326)
T PRK11727 95 ADYIHHLADLLAEDNSGVIPKGANVRVLDIGVGANCIYPIIGVQE---YGWRFVGSDIDPQALASAQAIISANPGLNGAI 171 (326)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCEE---CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 779999999861136677888887236750567431121014300---17637996179899999999998482010527
Q ss_pred EEEE-CHHHHH----HHCCCCCCEEEEC
Q ss_conf 9980-426653----3124798699991
Q gi|254780807|r 126 KVFA-CRIQEA----PQMITTCDVISAR 148 (168)
Q Consensus 126 ~vi~-~r~e~~----~~~~~~~d~v~sR 148 (168)
++.. ..-+.+ -+..+.||+.++-
T Consensus 172 ~lr~q~~~~~If~gii~~~e~fdftmCN 199 (326)
T PRK11727 172 RLRLQKDSKAIFKGIIHKNERFDLTLCN 199 (326)
T ss_pred EEEECCCHHHHHCCCCCCCCEEEEEECC
T ss_conf 9996278676532458876657778518
No 114
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=89.51 E-value=1.8 Score=23.48 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH-CCCCCCEEEE
Q ss_conf 23443111114677335656522755466347875000038999999999738980-998042665331-2479869999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ-MITTCDVISA 147 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~-~~~~~d~v~s 147 (168)
+.+.+|+|+-++.|==..-||-...+. +.+...|.+.+|+.-|.+-+.++|..| .+.+.....+.. ..+.||.|..
T Consensus 112 ~pge~VLDlCAAPGGKtt~la~~m~~~--G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILv 189 (471)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQ--GALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILL 189 (471)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 999989995778548999999975899--669998388999999999999719984799935866740323010667998
Q ss_pred CC
Q ss_conf 14
Q gi|254780807|r 148 RA 149 (168)
Q Consensus 148 RA 149 (168)
-|
T Consensus 190 Da 191 (471)
T PRK11933 190 DA 191 (471)
T ss_pred CC
T ss_conf 78
No 115
>KOG1661 consensus
Probab=88.80 E-value=0.63 Score=26.19 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=46.0
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCC------EEEEEHHHHHHHHHHH---HHHHHHCC-CCEEEECHHHHHHHC
Q ss_conf 1234431111146773356565227554663------4787500003899999---99997389-809980426653312
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGG------LVNLIESKNKKASFLR---YVVQKTAA-RGKVFACRIQEAPQM 138 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~------~v~Lves~~KK~~FL~---~~~~~L~L-~~~vi~~r~e~~~~~ 138 (168)
...+.+++|+|||.|.=.-..|++--.-... .=.|||-+.|++.+-- ++...+.- +..++-+..-.....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred HCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 23473101337874089999999945777665144415999999998777650473045564148647996776234775
Q ss_pred CCCCCEEEECCCCC
Q ss_conf 47986999914799
Q gi|254780807|r 139 ITTCDVISARALAD 152 (168)
Q Consensus 139 ~~~~d~v~sRA~a~ 152 (168)
..+||-|-.-|=++
T Consensus 160 ~a~YDaIhvGAaa~ 173 (237)
T KOG1661 160 QAPYDAIHVGAAAS 173 (237)
T ss_pred CCCCCEEEECCCCC
T ss_conf 68766578766762
No 116
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=88.58 E-value=0.89 Score=25.29 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 234431111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA 135 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~ 135 (168)
..+..|+.||.|.|. +--+++... ..+++||..++=+.+|++- -+.+++++.+-..
T Consensus 38 ~~~d~VlEIGpG~G~--LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~-----~~~~ii~~D~L~~ 93 (267)
T PRK00274 38 QPGDRVLEIGPGLGA--LTEPLLERA---AKVTAIEIDRDLAPILRET-----DNLTIIEGDALKV 93 (267)
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHC---CCEEEEECCHHHHHHHHHC-----CCEEEEECHHHHC
T ss_conf 999907996388888--999999626---8058863688999998504-----7869996506647
No 117
>KOG3420 consensus
Probab=88.12 E-value=0.75 Score=25.73 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHCC---C-CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 98646356431001---2-3443111114677335656522755466347875000038999999999738980998042
Q gi|254780807|r 56 IRHVEDSLRVFQLH---P-YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACR 131 (168)
Q Consensus 56 ~rHi~DSl~~~~~~---~-~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r 131 (168)
.-||.-|....-.. + +++++.|+|.|.|.=. +|..+|.. ..+.-+|-..--..--+.-+.+..++..+.++.
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd 104 (185)
T KOG3420 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD 104 (185)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH--HHHHCCCC--CEEEEEECCHHHHHHHHHCHHHHHHHHHEEEEE
T ss_conf 67899999999986201204746225247611567--77505787--337864058899999861668752334212222
Q ss_pred HHHHHHCCCCCCEEE
Q ss_conf 665331247986999
Q gi|254780807|r 132 IQEAPQMITTCDVIS 146 (168)
Q Consensus 132 ~e~~~~~~~~~d~v~ 146 (168)
+-+.....+.||.++
T Consensus 105 ildle~~~g~fDtav 119 (185)
T KOG3420 105 ILDLELKGGIFDTAV 119 (185)
T ss_pred CCCHHCCCCEEEEEE
T ss_conf 155110587676678
No 118
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=87.97 E-value=1.4 Score=24.17 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=53.9
Q ss_pred HHHH--HHHHCCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH
Q ss_conf 6356--43100123443111114677335656522-75546634787500003899999999973898099804266533
Q gi|254780807|r 60 EDSL--RVFQLHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP 136 (168)
Q Consensus 60 ~DSl--~~~~~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~ 136 (168)
+|.+ .++...+.+.+|+|+|.|=- |||+. ++......++..|-...=++|++.....++....+.......-+
T Consensus 89 ld~fY~~if~~~~~p~sVlDlaCGlN----PLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~~~Dl~~~~ 164 (248)
T pfam07091 89 LDEFYAEIFGALPPPRSVLDLACGLN----PLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVRVRDLLTDP 164 (248)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCC----CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 89999999834899864420002688----30142336899867999707778999999999862987637987610479
Q ss_pred HCCCCCCEE
Q ss_conf 124798699
Q gi|254780807|r 137 QMITTCDVI 145 (168)
Q Consensus 137 ~~~~~~d~v 145 (168)
.....|+.
T Consensus 165 -p~~~~Dva 172 (248)
T pfam07091 165 -PAEPADVA 172 (248)
T ss_pred -CCCCCCCH
T ss_conf -98873400
No 119
>KOG2651 consensus
Probab=87.80 E-value=0.58 Score=26.36 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=50.2
Q ss_pred HHHCCCCCEEEECCHHHHHHHHHHHHH-----HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHH
Q ss_conf 984632130430899999898646356-----431001234431111146773356565227554663478750000389
Q gi|254780807|r 37 LKWSKKINLVSSSTVEDFWIRHVEDSL-----RVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKA 111 (168)
Q Consensus 37 ~~~N~~~NLts~~~~~~~~~rHi~DSl-----~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~ 111 (168)
..-|+-+||.......+. .|=++-+ ++..| ..-..++|+|+|-|.=.=.+++-+.. +|..||+++.-.
T Consensus 117 ~~~sq~~~l~rkh~~~k~--qhEi~~lselvSsi~~f-~gi~~vvD~GaG~G~LSr~lSl~y~l----sV~aIegsq~~~ 189 (476)
T KOG2651 117 SQSSQLTALFRKHVRPKK--QHEIRRLSELVSSISDF-TGIDQVVDVGAGQGHLSRFLSLGYGL----SVKAIEGSQRLV 189 (476)
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHH-CCCCHHHCCCCCCCHHHHHHHHCCCC----EEEEECCCHHHH
T ss_conf 345441015551001788--98999999999988765-18711411577732899998642681----699964636889
Q ss_pred HHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 99999999738980998042665
Q gi|254780807|r 112 SFLRYVVQKTAARGKVFACRIQE 134 (168)
Q Consensus 112 ~FL~~~~~~L~L~~~vi~~r~e~ 134 (168)
.--+...++|-+.-.-...|.+.
T Consensus 190 ~ra~rLdkhl~l~maK~gk~n~~ 212 (476)
T KOG2651 190 ERAQRLDKHLLLAMAKEGKRNPQ 212 (476)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99998999999999874366822
No 120
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.70 E-value=0.42 Score=27.20 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=36.3
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 443111114677335656522755466347875000038999999999738980
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG 125 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~ 125 (168)
.++++|+|.|.|---..+-=++|+++ .++++|- ..||++++..+.-++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~--sa~ile~----sp~lrkV~~tl~~nv 161 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLK--SAVILEA----SPALRKVGDTLAENV 161 (484)
T ss_pred CCHHHCCCCCCCHHHHHHCCCCCCCH--HHHHHCC----CHHHHHHHHHHHHHC
T ss_conf 61020037787521233203378802--2123404----899999999998604
No 121
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=85.59 E-value=3.2 Score=22.09 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=53.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH---HCCCCCCEEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533---1247986999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP---QMITTCDVIS 146 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~---~~~~~~d~v~ 146 (168)
.+..|+|.=++.|==---+|-+.++- +..|+.+|.+.+|..-|++-++++|+.| .+++......+ ....+||-|.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~-~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENE-GAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 97968880799976999999966899-87699744987899999999997199834899513301431134557778599
Q ss_pred EC
Q ss_conf 91
Q gi|254780807|r 147 AR 148 (168)
Q Consensus 147 sR 148 (168)
.=
T Consensus 235 lD 236 (355)
T COG0144 235 LD 236 (355)
T ss_pred EC
T ss_conf 87
No 122
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=84.65 E-value=1.3 Score=24.28 Aligned_cols=64 Identities=16% Similarity=0.055 Sum_probs=48.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHH--------HHHHHHHHHHHHHHHCCC--C-EEEECHHHHHHH
Q ss_conf 344311111467733565652275546634787500--------003899999999973898--0-998042665331
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIES--------KNKKASFLRYVVQKTAAR--G-KVFACRIQEAPQ 137 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves--------~~KK~~FL~~~~~~L~L~--~-~vi~~r~e~~~~ 137 (168)
+...++|||+|-|===|-+|=.+|+.. +--||- ..-=+.--.+-+.++|++ | .+.+..|.++..
T Consensus 19 ~~p~~~EIGcG~G~fl~~~A~~nP~~~---flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~ 93 (216)
T TIGR00091 19 QKPLVLEIGCGKGRFLIKMAKQNPDKN---FLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLE 93 (216)
T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCC---EEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH
T ss_conf 454489841687602689977279972---777899988741022728998875576617844213522136023204
No 123
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.40 E-value=4 Score=21.52 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=73.9
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-CCCCEEEECHHHHH-HHCCCCCCEEEECC
Q ss_conf 44311111467733565652275546634787500003899999999973-89809980426653-31247986999914
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT-AARGKVFACRIQEA-PQMITTCDVISARA 149 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L-~L~~~vi~~r~e~~-~~~~~~~d~v~sRA 149 (168)
...++|-=||.|.-||=+|.--+.. .+++-|-+++-+.-.++-++.. +-+..+++..+..+ .+....||+|=---
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~---~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV---KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---EEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCEEECCC
T ss_conf 7388643555336675453425761---7997158989999999999834766632553428999872588763781389
Q ss_pred CCCHHHHHHHHHHHHCC
Q ss_conf 79989999984885206
Q gi|254780807|r 150 LADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 150 ~a~l~~ll~~~~pllk~ 166 (168)
|+++..+++-+..-++.
T Consensus 130 FGSPaPFlDaA~~s~~~ 146 (380)
T COG1867 130 FGSPAPFLDAALRSVRR 146 (380)
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 99972679999997222
No 124
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=82.95 E-value=2.5 Score=22.76 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHC
Q ss_conf 46356431001234431111146773356565227554663478750000389999999997389809980426653312
Q gi|254780807|r 59 VEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQM 138 (168)
Q Consensus 59 i~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~ 138 (168)
..|-+.-++.. ....+.|+|.|.|---=.|+==+|.-+ ++-+||+.--+ ..+ +....+.+...+.+.+...
T Consensus 19 a~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~---i~GiDsS~~Ml---a~A-a~rlp~~~f~~aDl~~w~p- 89 (257)
T COG4106 19 ARDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAV---ITGIDSSPAML---AKA-AQRLPDATFEEADLRTWKP- 89 (257)
T ss_pred HHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHCCCCE---EEECCCCHHHH---HHH-HHHCCCCCEECCCHHHCCC-
T ss_conf 88998647866-641034557788778899998688886---76046999999---999-9748997321052754499-
Q ss_pred CCCCCEEEECCCCC
Q ss_conf 47986999914799
Q gi|254780807|r 139 ITTCDVISARALAD 152 (168)
Q Consensus 139 ~~~~d~v~sRA~a~ 152 (168)
..++|++.|-|+=.
T Consensus 90 ~~~~dllfaNAvlq 103 (257)
T COG4106 90 EQPTDLLFANAVLQ 103 (257)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 87633033443664
No 125
>KOG3201 consensus
Probab=82.85 E-value=1.4 Score=24.11 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCCEEECCC-CCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-E-EEECHHHH----HHHCCCCCCE
Q ss_conf 4431111146-77335656522755466347875000038999999999738980-9-98042665----3312479869
Q gi|254780807|r 72 PSIWIDLGSG-GGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-K-VFACRIQE----APQMITTCDV 144 (168)
Q Consensus 72 ~~~ilDiGSG-aGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~-vi~~r~e~----~~~~~~~~d~ 144 (168)
+..++.+|.| -|+-|+.+|+--|.. .|.|-|-+.+-++=++.++....... + +-.-|-.. ..+....||+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~---~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201 30 GRRILELGGGFTGLAGLMIACKAPDS---SVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHHHHHHCCCHHHHHHHHEEEECCCC---EEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCE
T ss_conf 78898726744655455204535873---588716978999979999851200256500034787764488875170227
Q ss_pred EEEC
Q ss_conf 9991
Q gi|254780807|r 145 ISAR 148 (168)
Q Consensus 145 v~sR 148 (168)
|+|-
T Consensus 107 IlaA 110 (201)
T KOG3201 107 ILAA 110 (201)
T ss_pred EEEC
T ss_conf 9860
No 126
>KOG3191 consensus
Probab=82.55 E-value=4.3 Score=21.32 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHHHH-HCCC--CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 646356431-0012--3443111114677335656522755466347875000038999999999738980998042665
Q gi|254780807|r 58 HVEDSLRVF-QLHP--YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE 134 (168)
Q Consensus 58 Hi~DSl~~~-~~~~--~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~ 134 (168)
.++|+|.-- .+.. +..-+++||||.|.-.--|+-..- ........|-+..-++.-.+.++..+.+..++......
T Consensus 27 lLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~--~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~ 104 (209)
T KOG3191 27 LLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIG--PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS 104 (209)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCC--CCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHH
T ss_conf 8999999999998614860589934884659999997417--77169995499899988799998557752056525776
Q ss_pred -HHHCCCCCCEEEEC
Q ss_conf -33124798699991
Q gi|254780807|r 135 -APQMITTCDVISAR 148 (168)
Q Consensus 135 -~~~~~~~~d~v~sR 148 (168)
+.+ ++.|+++-+
T Consensus 105 ~l~~--~~VDvLvfN 117 (209)
T KOG3191 105 GLRN--ESVDVLVFN 117 (209)
T ss_pred HHCC--CCCCEEEEC
T ss_conf 6332--773089978
No 127
>PRK04457 spermidine synthase; Provisional
Probab=82.49 E-value=4.4 Score=21.31 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 213043089999989864635643100123443111114677-3356565227554663478750000389999999997
Q gi|254780807|r 42 KINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK 120 (168)
Q Consensus 42 ~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~ 120 (168)
.+++-.+...+--|.|...-.+. +.+.+++++-||-||| +|--..+ .+|+. .++.||-++.-+..-++.
T Consensus 40 ~m~~~~P~~L~l~Ytr~Mm~~LL---f~p~Pk~vl~iGLGgGsl~k~~~~-~~P~~---~i~~VEIdp~Vi~vAr~~--- 109 (262)
T PRK04457 40 SMRLDRPSELVLSYSRAMMGFLL---FNPRPQHILQIGLGGGSFAKFIDT-YLPDT---RQTAVEINPQVIAVARNH--- 109 (262)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH---CCCCCCEEEEEECCHHHHHHHHHH-HCCCC---EEEEEECCHHHHHHHHHH---
T ss_conf 35427885021288999999986---589978699992570199999998-39867---589998788999999986---
Q ss_pred HCC-----CCEEEECHHHH-HHHCCCCCCEEEECCCCCH
Q ss_conf 389-----80998042665-3312479869999147998
Q gi|254780807|r 121 TAA-----RGKVFACRIQE-APQMITTCDVISARALADL 153 (168)
Q Consensus 121 L~L-----~~~vi~~r~e~-~~~~~~~~d~v~sRA~a~l 153 (168)
..+ +.+|+++.+.+ +.+...+||+|..=||.+-
T Consensus 110 F~lP~dd~Rl~V~~~Dg~~fv~~~~~~~DvI~vD~fd~~ 148 (262)
T PRK04457 110 FELPFEDEKFEIIEADGAEYIKVFPASTDVILVDGFDGE 148 (262)
T ss_pred CCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 579999972699955389998548677788999688988
No 128
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=82.24 E-value=0.35 Score=27.66 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=27.5
Q ss_pred ECCCCCHHHHH-HHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-C-CC-CEEEECHHH
Q ss_conf 11467733565-652275546634787500003899999999973-8-98-099804266
Q gi|254780807|r 78 LGSGGGFPGII-TSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT-A-AR-GKVFACRIQ 133 (168)
Q Consensus 78 iGSGaGfPGi~-laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L-~-L~-~~vi~~r~e 133 (168)
-=||||+||+| ++|. .| .+=-|.--+.|+ .++..+-| | ++ +.+.....+
T Consensus 182 AvSGAGY~GVp~~~I~-dN----~iP~I~GEE~KI--e~E~~KilsGkl~~g~~~PA~~~ 234 (358)
T TIGR00978 182 AVSGAGYPGVPSMDIL-DN----VIPHIGGEEEKI--ERETLKILSGKLENGKIEPAEFE 234 (358)
T ss_pred CHHCCCCCCCCHHHHH-CC----CCCCCCCHHHHH--HHHHHHHHCCCCCCCEEEEECCE
T ss_conf 0014888887545553-36----165506335898--76213333440038846420440
No 129
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=81.54 E-value=4.7 Score=21.10 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=50.6
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168)
.++.++=+|.| |+=-+ ||.+-..-..+|+.++++..|..+.+ +|+.+..+-....+..+...+.||.+..=+.
T Consensus 166 pG~~V~I~G~G-GlGh~--avQ~Aka~ga~Via~~~~~~K~e~a~----~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAG-GLGHM--AVQYAKAMGAEVIAITRSEEKLELAK----KLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCC-HHHHH--HHHHHHHCCCEEEEEECCHHHHHHHH----HHCCCEEEECCCCHHHHHHHHHCCEEEECCC
T ss_conf 99899998774-89999--99999986996999957877999999----8488289976781166776734739999877
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 9989999984885206
Q gi|254780807|r 151 ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 151 a~l~~ll~~~~pllk~ 166 (168)
+..++-+..+|+.
T Consensus 239 ---~~~~~~~l~~l~~ 251 (339)
T COG1064 239 ---PATLEPSLKALRR 251 (339)
T ss_pred ---HHHHHHHHHHHHC
T ss_conf ---4559999998642
No 130
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=80.59 E-value=4.4 Score=21.27 Aligned_cols=73 Identities=11% Similarity=0.232 Sum_probs=51.5
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH-HHH-CCCCCCEEEEC
Q ss_conf 443111114677335656522755466347875000038999999999738980-998042665-331-24798699991
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE-APQ-MITTCDVISAR 148 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~-~~~-~~~~~d~v~sR 148 (168)
++.++=+| ---+-||++|.-.-- ..+-.||-..+=++|.+.++.++|++| +++--...+ +|+ ...+||+.+.-
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mp---k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMP---KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCEEEEEC-CCHHHHHHHHHCCCC---CEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECC
T ss_conf 87689970-750657889863887---33799831589999999999984833155403051045839888507764359
No 131
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=79.84 E-value=5.4 Score=20.76 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--C---CC
Q ss_conf 99989864635643100123443111114677335656522-755466347875000038999999999738--9---80
Q gi|254780807|r 52 EDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTA--A---RG 125 (168)
Q Consensus 52 ~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~--L---~~ 125 (168)
|.+|..-+.+-.. ...+++++++=||-|-| |+.=.++ +|+++ ++++||-.++-+.+-++-...+. + ++
T Consensus 58 e~~YhE~lvH~~~--~~~~~pk~VLIiGGGDG--~~~rEvlk~~~v~--~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv 131 (240)
T pfam01564 58 EFIYHEMIAHVPL--CSHPNPKKVLIIGGGDG--GALREVVKHPSVE--KITLVEIDEKVIEFSKKFLPSLAGGFDDPRV 131 (240)
T ss_pred HHHHHHHHHCCHH--HHCCCCCEEEEECCCCH--HHHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 8888888745377--65888553676458657--9999985679953--8999757889999999987985243479855
Q ss_pred EEEECHHHH-HHHCCCCCCEEEECCCCCH
Q ss_conf 998042665-3312479869999147998
Q gi|254780807|r 126 KVFACRIQE-APQMITTCDVISARALADL 153 (168)
Q Consensus 126 ~vi~~r~e~-~~~~~~~~d~v~sRA~a~l 153 (168)
+++.+.+-+ +.+...+||+|++=.--|.
T Consensus 132 ~l~~~Dg~~~l~~~~~~yDvII~D~~DP~ 160 (240)
T pfam01564 132 KVVIGDGFKFLKDYLVKFDVIIVDSTDPV 160 (240)
T ss_pred EEEEHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 99981689999857254458999589976
No 132
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=78.69 E-value=5.9 Score=20.55 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=76.0
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHH-HCCCCCCEEEEC
Q ss_conf 344311111467733565652275546634787500003899999999973898-099804266533-124798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAP-QMITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~-~~~~~~d~v~sR 148 (168)
.+.+++|-=||.|+=||=++---+ ...|+..|-++.-+.-+++-++..+++ .++.+..+..+- +....||+|=-=
T Consensus 51 ~~~~ilDalsasGiR~iRy~~E~~---~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~IDlD 127 (376)
T PRK04338 51 RRKSVLDALSASGIRGIRYALETG---VEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVDID 127 (376)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEC
T ss_conf 697687406765499999987279---98799956999999999999998299826981324899998378758778678
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 479989999984885206
Q gi|254780807|r 149 ALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 149 A~a~l~~ll~~~~pllk~ 166 (168)
.|+++..+++-+..-++.
T Consensus 128 PfGSp~pflDsAi~~v~~ 145 (376)
T PRK04338 128 PFGSPAPFLDSAIRALRR 145 (376)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 999920879999998403
No 133
>KOG0820 consensus
Probab=77.18 E-value=6.5 Score=20.29 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHH------HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EE
Q ss_conf 98646356------43100123443111114677335656522755466347875000038999999999738980--99
Q gi|254780807|r 56 IRHVEDSL------RVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KV 127 (168)
Q Consensus 56 ~rHi~DSl------~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~v 127 (168)
.+||++-. ..-.-++.+..++.+|-|.|- +-.+++-. +..|..+|+..+-+.-|+.-..-+.... .|
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGn--LT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV 111 (315)
T KOG0820 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGN--LTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQV 111 (315)
T ss_pred CHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCH--HHHHHHHH---CCEEEEEECCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 14555477889999860478998779995798778--99999972---08489994080789999998669986560468
Q ss_pred EECHHHHHHHCCCCCCEEEE
Q ss_conf 80426653312479869999
Q gi|254780807|r 128 FACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 128 i~~r~e~~~~~~~~~d~v~s 147 (168)
++++.-... ...||.++|
T Consensus 112 ~~gD~lK~d--~P~fd~cVs 129 (315)
T KOG0820 112 LHGDFLKTD--LPRFDGCVS 129 (315)
T ss_pred EECCCCCCC--CCCCCEEEC
T ss_conf 850312578--851031122
No 134
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=76.76 E-value=2 Score=23.33 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 677335656522755466347875000038999999
Q gi|254780807|r 81 GGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRY 116 (168)
Q Consensus 81 GaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~ 116 (168)
|.|+=|+|+|+.+.+. +..|+.+|.+++|+.-++.
T Consensus 7 GlGyVGl~~a~~la~~-G~~V~g~D~d~~~v~~ln~ 41 (185)
T pfam03721 7 GLGYVGLPTAVCLAEI-GHDVVGVDINQSKIDKLNN 41 (185)
T ss_pred CCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHC
T ss_conf 9787489999999948-9939999799899999862
No 135
>KOG1663 consensus
Probab=76.68 E-value=6.8 Score=20.21 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=65.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHH-HHH-----CCCCC
Q ss_conf 34431111146773356565227554663478750000389999999997389--80998042665-331-----24798
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQE-APQ-----MITTC 142 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~-~~~-----~~~~~ 142 (168)
++++++|+|+=.|.-.+-.|.+.|+ .++|+.+|-+.--...-....+.-+. +++++++++-+ +.+ ....|
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~--dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663 73 NAKRTLELGVFTGYSALAVALALPE--DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCE
T ss_conf 8733899812127899999974599--96599996186888875999986063303423425256669999855799842
Q ss_pred CEEEECCCCCHH-HHHHHHHHHHC
Q ss_conf 699991479989-99998488520
Q gi|254780807|r 143 DVISARALADLD-TLLEYSFPWLY 165 (168)
Q Consensus 143 d~v~sRA~a~l~-~ll~~~~pllk 165 (168)
|+++--|....- ...+-+..|++
T Consensus 151 DfaFvDadK~nY~~y~e~~l~Llr 174 (237)
T KOG1663 151 DFAFVDADKDNYSNYYERLLRLLR 174 (237)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 599973666778999999985621
No 136
>PRK04040 adenylate kinase; Provisional
Probab=76.20 E-value=5.7 Score=20.66 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=44.3
Q ss_pred HHHHHHHHHCCCCCEEEECCHHH----HHHHHHHHHH--HHHHCCCCCCCCEE----ECCCCC-HHHHH---HHHCCCCC
Q ss_conf 99999998463213043089999----9898646356--43100123443111----114677-33565---65227554
Q gi|254780807|r 31 YFYFLFLKWSKKINLVSSSTVED----FWIRHVEDSL--RVFQLHPYPSIWID----LGSGGG-FPGII---TSIQLSSI 96 (168)
Q Consensus 31 ~y~~ll~~~N~~~NLts~~~~~~----~~~rHi~DSl--~~~~~~~~~~~ilD----iGSGaG-fPGi~---laI~~p~~ 96 (168)
.|-+...+--++-+|+.-+|.=. --.+++..-+ .+...-....-++| |-|.+| +||+| +..+.|+.
T Consensus 34 n~G~~M~e~A~~~glv~~RDemRkL~~~~q~~lQ~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ 113 (189)
T PRK04040 34 NFGDVMLEVAKEEGLVEHRDEMRKLPLEEQKELQREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDV 113 (189)
T ss_pred EHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCE
T ss_conf 67799999999817734778874799999999999999999983578728994452002688677899899998669988
Q ss_pred CCCEEEEEHHHHHHHH
Q ss_conf 6634787500003899
Q gi|254780807|r 97 EGGLVNLIESKNKKAS 112 (168)
Q Consensus 97 ~~~~v~Lves~~KK~~ 112 (168)
+.++|..++-+-
T Consensus 114 ----ivlieA~P~eIl 125 (189)
T PRK04040 114 ----IVLIEADPDEIL 125 (189)
T ss_pred ----EEEEECCHHHHH
T ss_conf ----999975889999
No 137
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=75.06 E-value=1.9 Score=23.44 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH---HHH--HHCC-CCCC-CCEE----ECCCCC-HHHHH---HHHC
Q ss_conf 99999999998463213043089999989864635---643--1001-2344-3111----114677-33565---6522
Q gi|254780807|r 28 KLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDS---LRV--FQLH-PYPS-IWID----LGSGGG-FPGII---TSIQ 92 (168)
Q Consensus 28 ~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DS---l~~--~~~~-~~~~-~ilD----iGSGaG-fPGi~---laI~ 92 (168)
++..|-++..+--++-+|+-.++ ++. +...|- +|. .+.+ .... -++| |-|++| +||+| +.++
T Consensus 32 ~ivNyG~~Mle~A~k~glve~rD--~~R-klp~e~Q~~lq~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l 108 (189)
T COG2019 32 KIVNYGDLMLEIAKKKGLVEHRD--EMR-KLPLENQRELQAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEEL 108 (189)
T ss_pred EEEEHHHHHHHHHHHHCCCCCHH--HHH-CCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCCHHHHHHC
T ss_conf 00007699999999838720289--885-298889999999999999974206587324111478766778839999752
Q ss_pred CCCCCCCEEEEEHHHHHHHHH
Q ss_conf 755466347875000038999
Q gi|254780807|r 93 LSSIEGGLVNLIESKNKKASF 113 (168)
Q Consensus 93 ~p~~~~~~v~Lves~~KK~~F 113 (168)
.|+. +.++|...+.+..
T Consensus 109 ~pd~----ivllEaDp~~Il~ 125 (189)
T COG2019 109 NPDV----IVLLEADPEEILE 125 (189)
T ss_pred CCCE----EEEEECCHHHHHH
T ss_conf 9887----9999379899999
No 138
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=75.00 E-value=5.9 Score=20.57 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCC----CCEE
Q ss_conf 3443111114677335656522755466347875000038999999999738980-9980426653312479----8699
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITT----CDVI 145 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~----~d~v 145 (168)
.+..|+|+-+-.|==-==||-+..|. +-|..+|.+.-|+..|..=+.++|.-| .|++...-.++....+ ||-|
T Consensus 77 ~~~~vlD~AAaPGgKTT~is~~m~N~--G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eifFD~i 154 (284)
T TIGR00446 77 EKERVLDMAAAPGGKTTQISALMKNE--GAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIFFDRI 154 (284)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC--CEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEEEEEE
T ss_conf 88879997408896489999986588--5189973763410667865556210033324137630012314430343214
Q ss_pred E
Q ss_conf 9
Q gi|254780807|r 146 S 146 (168)
Q Consensus 146 ~ 146 (168)
.
T Consensus 155 L 155 (284)
T TIGR00446 155 L 155 (284)
T ss_pred E
T ss_conf 5
No 139
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=73.52 E-value=8.2 Score=19.73 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--------C--CCEEEECHHHH-HHHCCCCC
Q ss_conf 3111114677335656522755466347875000038999999999738--------9--80998042665-33124798
Q gi|254780807|r 74 IWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA--------A--RGKVFACRIQE-APQMITTC 142 (168)
Q Consensus 74 ~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~--------L--~~~vi~~r~e~-~~~~~~~~ 142 (168)
+|+|.-.|=|-=+++||-+ ++.|+++|.+.-=...|+....+-. + +.+.+++.+.+ +.+....+
T Consensus 78 ~VlDATAGLG~DafiLAsL-----G~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~~~~~ 152 (235)
T pfam04445 78 TVLDATAGLGRDAFVLASL-----GCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPNIDQP 152 (235)
T ss_pred EEEECCCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCCCCC
T ss_conf 3898787757889999818-----99699997889999999999999874815579999628998388799975246898
Q ss_pred CEEE
Q ss_conf 6999
Q gi|254780807|r 143 DVIS 146 (168)
Q Consensus 143 d~v~ 146 (168)
|+|-
T Consensus 153 DvIY 156 (235)
T pfam04445 153 DVVY 156 (235)
T ss_pred CEEE
T ss_conf 7899
No 140
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=72.85 E-value=8.5 Score=19.64 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=35.9
Q ss_pred CEEECCCCC-HHHHHHHHCC--CCCCCCEEEEEHHH-HHH----HHHHHHHHHHHCCCCEE--EECHHHHH
Q ss_conf 111114677-3356565227--55466347875000-038----99999999973898099--80426653
Q gi|254780807|r 75 WIDLGSGGG-FPGIITSIQL--SSIEGGLVNLIESK-NKK----ASFLRYVVQKTAARGKV--FACRIQEA 135 (168)
Q Consensus 75 ilDiGSGaG-fPGi~laI~~--p~~~~~~v~Lves~-~KK----~~FL~~~~~~L~L~~~v--i~~r~e~~ 135 (168)
+.=||.|+. +|+++..++. +.+....+.|+|-. +.| ..+.+.++++.+.+.++ ...|-|-+
T Consensus 3 I~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl 73 (419)
T cd05296 3 LTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREAL 73 (419)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99989746655899999984543489888999899859999999999999999609980899967999983
No 141
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=72.28 E-value=8.8 Score=19.56 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168)
.+.+|+|+|.|-|..-=-++-..|......+.-+|-+.--+ +.++ +..-+....-+..-++|=....+|+|++ =|
T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai---~~Aa-k~~~~~~~~Va~~~~lP~~d~s~D~vl~-vF 159 (272)
T PRK11088 85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAI---KYAA-KRYPQVTFCVASSHRLPFADQSLDAIIR-IY 159 (272)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHH---HHHH-CCCCCCEEEEEECCCCCCCCCCCEEEEE-EE
T ss_conf 78648881587778999999974115787379981179999---9996-2688854999610018887665408999-84
Q ss_pred CCH
Q ss_conf 998
Q gi|254780807|r 151 ADL 153 (168)
Q Consensus 151 a~l 153 (168)
+|.
T Consensus 160 sP~ 162 (272)
T PRK11088 160 APC 162 (272)
T ss_pred CCC
T ss_conf 378
No 142
>KOG2920 consensus
Probab=72.07 E-value=1.5 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHH
Q ss_conf 234431111146773356565227554663478750000
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKN 108 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~ 108 (168)
-.+++++|+|.|+|+|||-..+- ....++..|-+.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~----~~~~~~fqD~na 149 (282)
T KOG2920 115 FSGKRVLELGCGAALPGIFAFVK----GAVSVHFQDFNA 149 (282)
T ss_pred ECCCEEEECCCCCCCCCHHHHHH----CCCEEEEEECCH
T ss_conf 44755686378645641666640----353233473351
No 143
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=70.49 E-value=6.7 Score=20.22 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH----H-CCCCCCEE
Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533----1-24798699
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP----Q-MITTCDVI 145 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~----~-~~~~~d~v 145 (168)
.+..++.+|-|.|. +-=||+..-.....++++|.+.- |..+..+.-. ...++++.++++. + ....||.|
T Consensus 48 sglpVlElGPGTGV--~TkaIL~~gv~~~~L~~iE~~~d---F~~~L~~~~p-~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGV--ITKAILSRGVRPESLTAIEYSPD---FVCHLNQLYP-GVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred CCCEEEEECCCCCH--HHHHHHHCCCCCCCEEEEEECHH---HHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 59764777698667--68999965799543689982779---9999997588-751305405657877865279740168
Q ss_pred EE
Q ss_conf 99
Q gi|254780807|r 146 SA 147 (168)
Q Consensus 146 ~s 147 (168)
+|
T Consensus 122 iS 123 (194)
T COG3963 122 IS 123 (194)
T ss_pred EE
T ss_conf 86
No 144
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=68.77 E-value=11 Score=19.10 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHC
Q ss_conf 46356431001234431111146773356565227554663478750000389999999997389809980426653312
Q gi|254780807|r 59 VEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQM 138 (168)
Q Consensus 59 i~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~ 138 (168)
+..++.-......+++++=+|+||-=..+..++..-.. .+++++.++.+|..-| +++++-...+ ...++....
T Consensus 109 ~~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~--~~i~i~nR~~~~a~~l---~~~~~~~~~~--~~~~~~~~~ 181 (275)
T PRK00258 109 FVRDLERLGLDLKGKRILLLGAGGAARAVILPLLELGV--AEITIVNRTVERAEEL---AELFGEGVQA--LGLDELAGE 181 (275)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCC--CEEEEEECCHHHHHHH---HHHHCCCCCE--EEHHHHHHC
T ss_conf 99999984878568759998887107999999997699--9899995899999999---9983567627--537875430
Q ss_pred CCCCCEEEE
Q ss_conf 479869999
Q gi|254780807|r 139 ITTCDVISA 147 (168)
Q Consensus 139 ~~~~d~v~s 147 (168)
...+|+|+.
T Consensus 182 ~~~~diiIn 190 (275)
T PRK00258 182 LADFDLIIN 190 (275)
T ss_pred CCCCCEEEE
T ss_conf 445777996
No 145
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=68.73 E-value=11 Score=19.10 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=37.9
Q ss_pred CEEECCCCC-HHHHHHHHCC-C-CCCCCEEEEEHHHHHHHHHHHH----HHHHHCCCCEE--EECHHHHHHHCCCCCCEE
Q ss_conf 111114677-3356565227-5-5466347875000038999999----99973898099--804266533124798699
Q gi|254780807|r 75 WIDLGSGGG-FPGIITSIQL-S-SIEGGLVNLIESKNKKASFLRY----VVQKTAARGKV--FACRIQEAPQMITTCDVI 145 (168)
Q Consensus 75 ilDiGSGaG-fPGi~laI~~-p-~~~~~~v~Lves~~KK~~FL~~----~~~~L~L~~~v--i~~r~e~~~~~~~~~d~v 145 (168)
+.=||.|+. .|+++..++. + .+....+.|+|-.+.|...... ++++.+.+.++ ...|.|-+. ..|+|
T Consensus 3 I~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~----gADfV 78 (425)
T cd05197 3 IAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAII----DADFV 78 (425)
T ss_pred EEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHC----CCCEE
T ss_conf 99989836878999999983843378898999889999999999999999996199838999789999856----89999
Q ss_pred E
Q ss_conf 9
Q gi|254780807|r 146 S 146 (168)
Q Consensus 146 ~ 146 (168)
+
T Consensus 79 i 79 (425)
T cd05197 79 I 79 (425)
T ss_pred E
T ss_conf 9
No 146
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=66.26 E-value=3.9 Score=21.58 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999
Q gi|254780807|r 21 VSRETLEKLEYFYFLFL 37 (168)
Q Consensus 21 ls~eq~~~l~~y~~ll~ 37 (168)
.+++..++...+++.+.
T Consensus 180 ~~~~~~~~~~~ly~~~~ 196 (415)
T PRK11064 180 MTPVCSARASELYKIFL 196 (415)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 78899999999999974
No 147
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.13 E-value=12 Score=18.79 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHH
Q ss_conf 64635643100123443111114677335656522755466347875000038999999999
Q gi|254780807|r 58 HVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQ 119 (168)
Q Consensus 58 Hi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~ 119 (168)
-++.++.-.....++++++=+|+||=-.++..+...-.. .+++++.++..|..-|.+-..
T Consensus 5 Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~g~--~~I~i~nR~~~r~~~l~~~~~ 64 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGA--AKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHH
T ss_conf 999999972998579999998675899999999997199--822886089999999999850
No 148
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase; InterPro: IPR014186 This entry describes proteins from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (3.1.2.12 from EC). Eukaryotic members, particularly the human protein, are better known as esterase D (3.1.1.1 from EC), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well..
Probab=65.93 E-value=2 Score=23.28 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=8.8
Q ss_pred CEEECCCCCH
Q ss_conf 1111146773
Q gi|254780807|r 75 WIDLGSGGGF 84 (168)
Q Consensus 75 ilDiGSGaGf 84 (168)
-.|+|+||||
T Consensus 94 ~wDfG~GAGF 103 (279)
T TIGR02821 94 EWDFGKGAGF 103 (279)
T ss_pred CCCCCCCCCC
T ss_conf 4214798752
No 149
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.08 E-value=13 Score=18.67 Aligned_cols=61 Identities=26% Similarity=0.247 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHH---H-HHCCCCCCEEEEC
Q ss_conf 6773356565227554663478750000389999999997389-80998042665---3-3124798699991
Q gi|254780807|r 81 GGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQE---A-PQMITTCDVISAR 148 (168)
Q Consensus 81 GaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~---~-~~~~~~~d~v~sR 148 (168)
|||-=|.-+|=... ++..|+++|+...||..+.+ .| +..|+|+.+.+ + ......+|.++|=
T Consensus 239 Ggg~ig~~la~~L~--~~~~v~iIe~d~~~~~~la~-----~l~~~~Vi~GD~td~~~L~e~gi~~aD~~ia~ 304 (455)
T PRK09496 239 GGGNIGLYLAKLLE--KGYSVKLIERDPERAEELAE-----ELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (455)
T ss_pred CCCHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHH-----HCCCCEEEECCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 78699999999874--08838997089899999997-----47853999788768899976364556489990
No 150
>KOG3115 consensus
Probab=64.77 E-value=12 Score=18.72 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-------CCC-EEEECHHH
Q ss_conf 43111114677335656522755466347875000038999999999738-------980-99804266
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA-------ARG-KVFACRIQ 133 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-------L~~-~vi~~r~e 133 (168)
-.+.|||.|=|===+-||-.+|+- .+.-.|-+-|-++.+++-+..|. ++| .+....+-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdt---LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam 127 (249)
T KOG3115 62 VEFADIGCGYGGLLMKLAPKFPDT---LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM 127 (249)
T ss_pred CEEEEECCCCCCHHHHCCCCCCCC---EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCH
T ss_conf 427860467650101205468630---122001268888999999999752654334565303421202
No 151
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.73 E-value=4.7 Score=21.14 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999
Q gi|254780807|r 21 VSRETLEKLEYFYFLFL 37 (168)
Q Consensus 21 ls~eq~~~l~~y~~ll~ 37 (168)
.+++..+.+..+++-+.
T Consensus 175 ~~~~~~~~~~~ly~~~~ 191 (411)
T TIGR03026 175 ETEEAGEAVAELYAPII 191 (411)
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 84999999999999746
No 152
>PRK00811 spermidine synthase; Provisional
Probab=64.72 E-value=13 Score=18.63 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=51.0
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC---C---CCEEEECHHHH-HHHCCC
Q ss_conf 123443111114677335656522-755466347875000038999999999738---9---80998042665-331247
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTA---A---RGKVFACRIQE-APQMIT 140 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~---L---~~~vi~~r~e~-~~~~~~ 140 (168)
.+++++++=||.|-| |+.=-++ +|.++ +|++||-.++-+...++--.+++ + +++++...+-. +.+..+
T Consensus 76 h~~pk~VLIiGGGDG--g~~rE~lkh~~v~--~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~ 151 (283)
T PRK00811 76 HPNPKKVLIIGGGDG--GTLREVLKHPSVE--KITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETEN 151 (283)
T ss_pred CCCCCEEEEECCCCH--HHHHHHHCCCCCC--EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCC
T ss_conf 899774899568747--9999984278856--799994689999999998388631330297159982789999984523
Q ss_pred CCCEEEECCC
Q ss_conf 9869999147
Q gi|254780807|r 141 TCDVISARAL 150 (168)
Q Consensus 141 ~~d~v~sRA~ 150 (168)
+||+|+.-.-
T Consensus 152 ~yDvII~D~t 161 (283)
T PRK00811 152 SFDVIIVDST 161 (283)
T ss_pred CCCEEEEECC
T ss_conf 5548998089
No 153
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=64.15 E-value=5.2 Score=20.87 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=40.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 34431111146773356565227554663478750000389999999997389--8099804266533124798699991
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
...+++|||-|.|.=..-++=.+|+++ +++.| +-+++....- .++++.+..-+ + ....|+++-|
T Consensus 101 ~~~~vvDvGGG~G~~~~~i~~~~P~l~---~~v~D--------lp~v~~~a~~~~rv~~~~gdff~--~-~P~aD~y~l~ 166 (239)
T pfam00891 101 GLSSLVDVGGGTGALAAAIVRAYPHIK---GIVFD--------LPHVIADAPSADRVEFVGGDFFE--S-VPEADAILLK 166 (239)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCE---EEEEE--------CHHHHHHCCCCCCEEEECCCCCC--C-CCCCCEEEEE
T ss_conf 787689967981899999999889983---89864--------68778627646854884487777--8-8885177640
Q ss_pred CC
Q ss_conf 47
Q gi|254780807|r 149 AL 150 (168)
Q Consensus 149 A~ 150 (168)
.+
T Consensus 167 ~v 168 (239)
T pfam00891 167 WV 168 (239)
T ss_pred HH
T ss_conf 14
No 154
>PRK03612 spermidine synthase; Provisional
Probab=63.84 E-value=13 Score=18.53 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=51.8
Q ss_pred CCCCCCCEEECCCCCHHH-HHHHHCCCCCCCCEEEEEHHHHHHHHHHHHH--HHHHC---C---CCEEEECHHHH-HHHC
Q ss_conf 123443111114677335-6565227554663478750000389999999--99738---9---80998042665-3312
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPG-IITSIQLSSIEGGLVNLIESKNKKASFLRYV--VQKTA---A---RGKVFACRIQE-APQM 138 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPG-i~laI~~p~~~~~~v~Lves~~KK~~FL~~~--~~~L~---L---~~~vi~~r~e~-~~~~ 138 (168)
.+++++++=+|-|-|.-- =+ .-+|+++ ++++||-.+.-+.+-++- ..+++ + +++++++.+-+ +.+.
T Consensus 291 ~~~p~~VLiiGGGdG~a~rev--Lk~~~ve--~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~ 366 (516)
T PRK03612 291 SPRARRVLILGGGDGLALREV--LKYPDVE--QVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL 366 (516)
T ss_pred CCCCCEEEEECCCCCHHHHHH--HCCCCCC--EEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHC
T ss_conf 999773899837760879998--6489966--378995188999999857214444123234996489853789999868
Q ss_pred CCCCCEEEECCCCC
Q ss_conf 47986999914799
Q gi|254780807|r 139 ITTCDVISARALAD 152 (168)
Q Consensus 139 ~~~~d~v~sRA~a~ 152 (168)
.++||+|+.----|
T Consensus 367 ~~~yDvIi~D~pdP 380 (516)
T PRK03612 367 PETFDAIIVDLPDP 380 (516)
T ss_pred CCCCCEEEEECCCC
T ss_conf 88788899818997
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=63.61 E-value=13 Score=18.51 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCCCCEEEECCHHHHH---------HHHHHHHHHHHHC---CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHH
Q ss_conf 6321304308999998---------9864635643100---123443111114677335656522755466347875000
Q gi|254780807|r 40 SKKINLVSSSTVEDFW---------IRHVEDSLRVFQL---HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESK 107 (168)
Q Consensus 40 N~~~NLts~~~~~~~~---------~rHi~DSl~~~~~---~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~ 107 (168)
-+.+||.-.++..-+. ..|..+...+.+. .....+|+=+|-|-|+-- ==-.-+|+.+ +|||||-.
T Consensus 96 ~~~~~~~~~nDlRLYLNG~LQFSS~DEyRYHEaLVHPaMa~~~~~~rVLILGGGDGLAl-REVLKyp~Ve--~VTLVDLD 172 (363)
T PRK01581 96 YQNINLLQVSDIRLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLAL-REVLKYETVL--HVDLVDLD 172 (363)
T ss_pred CCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHH-HHHHCCCCCC--EEEEEECC
T ss_conf 55301166520589974865304006767777653266531788773899807643999-9987179856--27899569
Q ss_pred HHHHHHHHHH--HHHHC---C---CCEEEECHHHH-HHHCCCCCCEEEECC
Q ss_conf 0389999999--99738---9---80998042665-331247986999914
Q gi|254780807|r 108 NKKASFLRYV--VQKTA---A---RGKVFACRIQE-APQMITTCDVISARA 149 (168)
Q Consensus 108 ~KK~~FL~~~--~~~L~---L---~~~vi~~r~e~-~~~~~~~~d~v~sRA 149 (168)
+--+..-+.. ..+|+ | +++|++..+-+ +.+....||+|+.--
T Consensus 173 P~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvIIVDl 223 (363)
T PRK01581 173 GSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVIIIDF 223 (363)
T ss_pred HHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEEEC
T ss_conf 999998751979987512001498049992108999861675442899958
No 156
>KOG2187 consensus
Probab=63.55 E-value=11 Score=18.90 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=49.3
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH
Q ss_conf 3443111114677335656522755466347875000038999999999738980-9980426653
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA 135 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~ 135 (168)
.++.++|+=.|.|.=|+-+|= ...+|.-||-+.--+.+-+.-+...|+.| +.|++++|+.
T Consensus 383 ~~k~llDv~CGTG~iglala~-----~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187 383 ADKTLLDVCCGTGTIGLALAR-----GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCEEEEEEECCCCEEHHHHC-----CCCCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCHHHC
T ss_conf 884799863068840000102-----6661210233845444355400115865402430642001
No 157
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=63.25 E-value=3.5 Score=21.84 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHH-CCCCCCCCEEEEEHHHH
Q ss_conf 467733565652-27554663478750000
Q gi|254780807|r 80 SGGGFPGIITSI-QLSSIEGGLVNLIESKN 108 (168)
Q Consensus 80 SGaGfPGi~laI-~~p~~~~~~v~Lves~~ 108 (168)
=|||+-|+++|= ...++. .+|-+||++.
T Consensus 7 vGaGl~G~V~A~r~l~~lg-k~VLvvEkR~ 35 (390)
T TIGR00031 7 VGAGLSGIVLANRILAQLG-KRVLVVEKRN 35 (390)
T ss_pred ECCCHHHHHHHHHHHHHCC-CEEEEEEECC
T ss_conf 8663677999999999709-9889997306
No 158
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=61.52 E-value=5.6 Score=20.67 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHH-CC-CCCCCCEEECCCCCHHHHHHHHCCCCCC----CCEEEEEHHHHHHHHHHHHHHHHH-CCC
Q ss_conf 9998986463564310-01-2344311111467733565652275546----634787500003899999999973-898
Q gi|254780807|r 52 EDFWIRHVEDSLRVFQ-LH-PYPSIWIDLGSGGGFPGIITSIQLSSIE----GGLVNLIESKNKKASFLRYVVQKT-AAR 124 (168)
Q Consensus 52 ~~~~~rHi~DSl~~~~-~~-~~~~~ilDiGSGaGfPGi~laI~~p~~~----~~~v~Lves~~KK~~FL~~~~~~L-~L~ 124 (168)
.--|.+|+.|-|.-.. -+ ...-..+|||+||-. ++|-+. +.+++--|-..--..--+.++... +++
T Consensus 57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnC-------IYPliG~~eYgwrfvGseid~~sl~sAk~ii~~N~~l~ 129 (292)
T COG3129 57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANC-------IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC-------CCCCCCCEEECCEEECCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 36799999999874389877676478850457642-------00213321212200157468778888899987090415
Q ss_pred CEEEECHH---H----HHHHCCCCCCEEEE
Q ss_conf 09980426---6----53312479869999
Q gi|254780807|r 125 GKVFACRI---Q----EAPQMITTCDVISA 147 (168)
Q Consensus 125 ~~vi~~r~---e----~~~~~~~~~d~v~s 147 (168)
..+-..|- . ..-...+.||+.++
T Consensus 130 ~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 130 RAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred HHEEEEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 333677526854341651034433305751
No 159
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=61.25 E-value=15 Score=18.26 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3111114677335656522755466347875000038999999999738980
Q gi|254780807|r 74 IWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG 125 (168)
Q Consensus 74 ~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~ 125 (168)
.++|+|+.-|.=.+.+|-..+.- ..+|.++|+...-..-|+.-....++++
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~-~~~v~afEP~p~~~~~l~~n~~~n~~~~ 51 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEG-GGRVIAFEPLPDAYEILEENVKLNGLPN 51 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCC-CCEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf 97870177047999999741788-7318998689579999998620378787
No 160
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=61.03 E-value=4.6 Score=21.20 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=5.7
Q ss_pred CCCHHHHHHH
Q ss_conf 6773356565
Q gi|254780807|r 81 GGGFPGIITS 90 (168)
Q Consensus 81 GaGfPGi~la 90 (168)
|+|+||++++
T Consensus 502 GaGvP~v~~S 511 (526)
T TIGR02734 502 GAGVPGVLGS 511 (526)
T ss_pred CCCCCHHHHH
T ss_conf 8634502566
No 161
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=61.02 E-value=15 Score=18.23 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=40.5
Q ss_pred CEEECCCC-C-HHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHH----HHHHHCCCCEEE--ECHHHHHHHCCCCCCEE
Q ss_conf 11111467-7-335656522-755466347875000038999999----999738980998--04266533124798699
Q gi|254780807|r 75 WIDLGSGG-G-FPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRY----VVQKTAARGKVF--ACRIQEAPQMITTCDVI 145 (168)
Q Consensus 75 ilDiGSGa-G-fPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~----~~~~L~L~~~vi--~~r~e~~~~~~~~~d~v 145 (168)
+.=||.|+ + =|+++-.|+ .+++....+.|+|-...|...... ++++.+.+.++. ..|-|-+. ..|+|
T Consensus 3 I~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~----gADfV 78 (423)
T cd05297 3 IAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD----GADFV 78 (423)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHC----CCCEE
T ss_conf 99999864875999999996084578998999889999999999999999985199818999689999846----89999
Q ss_pred E
Q ss_conf 9
Q gi|254780807|r 146 S 146 (168)
Q Consensus 146 ~ 146 (168)
+
T Consensus 79 ~ 79 (423)
T cd05297 79 I 79 (423)
T ss_pred E
T ss_conf 9
No 162
>PRK10742 putative methyltransferase; Provisional
Probab=58.32 E-value=17 Score=17.96 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=49.6
Q ss_pred CCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC----------CCEEEECHHHH-HHHCCCCC
Q ss_conf 31111146773356565227554663478750000389999999997389----------80998042665-33124798
Q gi|254780807|r 74 IWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA----------RGKVFACRIQE-APQMITTC 142 (168)
Q Consensus 74 ~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L----------~~~vi~~r~e~-~~~~~~~~ 142 (168)
+|+|--.|=|-=+.+||-+ ++.|+++|++.--...|+....+-.. +.+.+++...+ +.+...++
T Consensus 91 ~VlDATAGLGrDAfvLAsl-----Gc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~~~L~~~~~~~ 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP 165 (250)
T ss_pred EEEECCCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCCCCC
T ss_conf 1898788746889999817-----98699997889999999999999873815589999616786586899997358898
Q ss_pred CEEE
Q ss_conf 6999
Q gi|254780807|r 143 DVIS 146 (168)
Q Consensus 143 d~v~ 146 (168)
|+|-
T Consensus 166 DVIY 169 (250)
T PRK10742 166 QVVY 169 (250)
T ss_pred CEEE
T ss_conf 8899
No 163
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=58.00 E-value=17 Score=17.92 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=4.2
Q ss_pred CEEECCCCCHH
Q ss_conf 11111467733
Q gi|254780807|r 75 WIDLGSGGGFP 85 (168)
Q Consensus 75 ilDiGSGaGfP 85 (168)
++|+|-|.|.|
T Consensus 184 ~i~iGgg~gv~ 194 (211)
T cd06808 184 QLSIGGSFAIL 194 (211)
T ss_pred EEEECCCCCCC
T ss_conf 89969982437
No 164
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=56.80 E-value=5.5 Score=20.72 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=25.9
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHH
Q ss_conf 34431111146773356565227554663478750000
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKN 108 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~ 108 (168)
+.++|+|+|||.-. =||+.+=|... ||++|++.
T Consensus 822 ~~~h~LDLGTGPEa--RiLsliP~~~p---VTm~D~RP 854 (1289)
T pfam06016 822 DLKHWLDLGTGPEA--RILSLIPPTLP---VTMCDTRP 854 (1289)
T ss_pred CCCEEEEECCCCCC--EEEEECCCCCC---EEEECCCC
T ss_conf 74557870588652--24541599985---16853777
No 165
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.05 E-value=4.9 Score=21.02 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH--HCCCCCCEEEECCC
Q ss_conf 4311111467733565652275546634787500003899999999973898099804266533--12479869999147
Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP--QMITTCDVISARAL 150 (168)
Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~--~~~~~~d~v~sRA~ 150 (168)
.+++|+|.|.|+-|.+|.=+-.. .+-||-+.. -|.. +.+-++-.+.....+..+. ...++||.|+|--|
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~-----ltGvDiS~n---Ml~k-A~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADR-----LTGVDISEN---MLAK-AHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CEEEECCCCCCCCCHHHHHHHHH-----CCCCCHHHH---HHHH-HHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 02344266767662767888865-----127762699---9999-88624157888989998755226776430124567
Q ss_pred CC----HHHHHHHHHHHH
Q ss_conf 99----899999848852
Q gi|254780807|r 151 AD----LDTLLEYSFPWL 164 (168)
Q Consensus 151 a~----l~~ll~~~~pll 164 (168)
-+ +..+...+..+|
T Consensus 198 l~YlG~Le~~~~~aa~~L 215 (287)
T COG4976 198 LPYLGALEGLFAGAAGLL 215 (287)
T ss_pred HHHHCCHHHHHHHHHHHC
T ss_conf 886400346899999855
No 166
>KOG2052 consensus
Probab=54.39 E-value=6.4 Score=20.36 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=20.5
Q ss_pred CEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHH
Q ss_conf 111114677335656522755466347875000038
Q gi|254780807|r 75 WIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKK 110 (168)
Q Consensus 75 ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK 110 (168)
..+=|||+|+|-++=.-+- ..++|+|..+|-
T Consensus 192 ~~tSGSGSGlplLVQRTia-----rqI~L~e~IGkG 222 (513)
T KOG2052 192 LETSGSGSGLPLLVQRTIA-----RQIVLQEIIGKG 222 (513)
T ss_pred HCCCCCCCCCHHHHHHHHH-----HEEEEEEEECCC
T ss_conf 2368887784458777654-----406889886276
No 167
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=54.21 E-value=16 Score=18.09 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEHHHHHH
Q ss_conf 677335656522755466347875000038
Q gi|254780807|r 81 GGGFPGIITSIQLSSIEGGLVNLIESKNKK 110 (168)
Q Consensus 81 GaGfPGi~laI~~p~~~~~~v~Lves~~KK 110 (168)
|||+-|+=+|-.+... +..||++|...+=
T Consensus 6 GgG~ig~E~A~~l~~~-G~~Vtiie~~~~~ 34 (82)
T pfam00070 6 GGGYIGLEFASALAKL-GSKVTVVERRDRL 34 (82)
T ss_pred CCCHHHHHHHHHHHHC-CCEEEEECCCCCC
T ss_conf 9889999999999863-9278998125733
No 168
>KOG4058 consensus
Probab=54.09 E-value=20 Score=17.54 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCC-EEEE-------------EHHHHHHHHHHHHHHHHHCCC
Q ss_conf 46356431001234431111146773356565227554663-4787-------------500003899999999973898
Q gi|254780807|r 59 VEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGG-LVNL-------------IESKNKKASFLRYVVQKTAAR 124 (168)
Q Consensus 59 i~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~-~v~L-------------ves~~KK~~FL~~~~~~L~L~ 124 (168)
+..-|++.+-.+ .++.+|+|||-| -|++|..+..+... -|.| -++..|.+.|.+.-.=+..|+
T Consensus 61 v~nVLSll~~n~-~GklvDlGSGDG--RiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058 61 VENVLSLLRGNP-KGKLVDLGSGDG--RIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHCCCCC-CCCEEECCCCCC--EEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 999998714899-881785258985--24466665077767743303899999999999874253310223211004455
Q ss_pred ---CEEEEC------HHHH-H-HHCCCCCCEEEECC
Q ss_conf ---099804------2665-3-31247986999914
Q gi|254780807|r 125 ---GKVFAC------RIQE-A-PQMITTCDVISARA 149 (168)
Q Consensus 125 ---~~vi~~------r~e~-~-~~~~~~~d~v~sRA 149 (168)
+.++.+ ..|+ + .++.....++.+|=
T Consensus 138 dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058 138 DYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRF 173 (199)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 563589960178776668999864768873788734
No 169
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=53.94 E-value=7.7 Score=19.89 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=37.8
Q ss_pred HHHHH-HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCC----------CCCCCCEEECCCCCHHHHHHHHCCCCCCC
Q ss_conf 99999-99984632130430899999898646356431001----------23443111114677335656522755466
Q gi|254780807|r 30 EYFYF-LFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLH----------PYPSIWIDLGSGGGFPGIITSIQLSSIEG 98 (168)
Q Consensus 30 ~~y~~-ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~----------~~~~~ilDiGSGaGfPGi~laI~~p~~~~ 98 (168)
..|.+ ++..|-+ .++++ +|+.+-+.++.|+ +....++|+|.|.|+=--+|. . ++
T Consensus 16 ~KY~~~lv~~W~E------~TdP~----K~VfEDlaIAayLi~LW~~~~~~~~~~~FvDlGCGNGlLV~IL~---~--EG 80 (112)
T pfam07757 16 QKYGQSLVSIWPE------CTDPQ----KFVFEDLAIAAYLIMLWRQTRSAESLQSFVDIGCGNGLLVYILA---S--EG 80 (112)
T ss_pred HHHHHHHHHCCCC------CCCCC----CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHH---H--CC
T ss_conf 9999999955752------37964----02689999999999999986142578853771477228999898---6--78
Q ss_pred CEEEEEHHHHHHHHHH
Q ss_conf 3478750000389999
Q gi|254780807|r 99 GLVNLIESKNKKASFL 114 (168)
Q Consensus 99 ~~v~Lves~~KK~~FL 114 (168)
..=.-+|-+.+|+.-+
T Consensus 81 y~G~GiD~R~RK~W~~ 96 (112)
T pfam07757 81 YRGYGIDLRKRKLWDM 96 (112)
T ss_pred CCCCCCCCCCCCCHHH
T ss_conf 8773314100241532
No 170
>pfam08010 Phage_30_3 Bacteriophage protein GP30.3. Proteins in this family are bacteriophage GP30.3 proteins. Their function is poorly characterized.
Probab=53.87 E-value=5.3 Score=20.84 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.7
Q ss_pred EEECCCCCHHHHHHHHCCCC
Q ss_conf 11114677335656522755
Q gi|254780807|r 76 IDLGSGGGFPGIITSIQLSS 95 (168)
Q Consensus 76 lDiGSGaGfPGi~laI~~p~ 95 (168)
+|||||++.||-.|+=+-|.
T Consensus 1 mdi~sg~~~ps~aLSNFa~~ 20 (146)
T pfam08010 1 MDIGSGARYPSCALSNFAPH 20 (146)
T ss_pred CCCCCCCCCCCHHHHCCCCC
T ss_conf 93656898873344138998
No 171
>KOG3987 consensus
Probab=52.74 E-value=4.8 Score=21.08 Aligned_cols=76 Identities=25% Similarity=0.187 Sum_probs=42.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE---
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999---
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA--- 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s--- 147 (168)
.+.+++|+|.|-|= +-.++.|..+ .|+.-|-+.+-..=|+ +.+-++-.. +|. .+..-+||+|+|
T Consensus 112 ~~~~lLDlGAGdGe---it~~m~p~fe--evyATElS~tMr~rL~----kk~ynVl~~---~ew-~~t~~k~dli~clNl 178 (288)
T KOG3987 112 EPVTLLDLGAGDGE---ITLRMAPTFE--EVYATELSWTMRDRLK----KKNYNVLTE---IEW-LQTDVKLDLILCLNL 178 (288)
T ss_pred CCEEEEECCCCCCC---HHHHHCCHHH--HHHHHHHHHHHHHHHH----HCCCCEEEE---HHH-HHCCCEEEHHHHHHH
T ss_conf 87068861678861---0012142189--9999876699999986----527736650---033-313722315888778
Q ss_pred --CCCCCHHHHHHH
Q ss_conf --147998999998
Q gi|254780807|r 148 --RALADLDTLLEY 159 (168)
Q Consensus 148 --RA~a~l~~ll~~ 159 (168)
|.+.|..-|-++
T Consensus 179 LDRc~~p~kLL~Di 192 (288)
T KOG3987 179 LDRCFDPFKLLEDI 192 (288)
T ss_pred HHHHCCHHHHHHHH
T ss_conf 87506767799999
No 172
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.77 E-value=21 Score=17.32 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=47.9
Q ss_pred CCEEECCCC-CHHHHHHHHC--CCCCCCCEEEEEHHHHHHHH----HHHHHHHHHCCCCEEEE--CHHHHHHHCCCCCCE
Q ss_conf 311111467-7335656522--75546634787500003899----99999997389809980--426653312479869
Q gi|254780807|r 74 IWIDLGSGG-GFPGIITSIQ--LSSIEGGLVNLIESKNKKAS----FLRYVVQKTAARGKVFA--CRIQEAPQMITTCDV 144 (168)
Q Consensus 74 ~ilDiGSGa-GfPGi~laI~--~p~~~~~~v~Lves~~KK~~----FL~~~~~~L~L~~~vi~--~r~e~~~~~~~~~d~ 144 (168)
+|.=||.|+ +||++++.-+ .|.+....+.|+|-.+.|-. ..+.++++.|.+..+.. .|-|-+ ..+|+
T Consensus 5 KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl----~gAdf 80 (442)
T COG1486 5 KIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREAL----EGADF 80 (442)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH----CCCCE
T ss_conf 69998997531479999898417557766699983877889999999999999639985899945899984----47988
Q ss_pred EEE
Q ss_conf 999
Q gi|254780807|r 145 ISA 147 (168)
Q Consensus 145 v~s 147 (168)
|++
T Consensus 81 Vi~ 83 (442)
T COG1486 81 VIT 83 (442)
T ss_pred EEE
T ss_conf 999
No 173
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=51.75 E-value=21 Score=17.32 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 99999999738980998042665331247986999914799
Q gi|254780807|r 112 SFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARALAD 152 (168)
Q Consensus 112 ~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~a~ 152 (168)
.=+++..++.|++.++.++++-+.+.+...+|++++-+-.+
T Consensus 21 ~kv~~~~~e~gi~v~i~Q~~i~ev~~~~~~~DlivtTt~~~ 61 (94)
T PRK10310 21 EEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 61 (94)
T ss_pred HHHHHHHHHCCCEEEEEEEEHHHHHHCCCCCCEEEEECCCC
T ss_conf 99999999859806899974787554168977899922537
No 174
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=51.45 E-value=22 Score=17.29 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=42.3
Q ss_pred CEEECCCCC-HHHHHHHHC--CCCCCCCEEEEEHHHHHHHHHHHHH----HHHHCCCCEEE--ECHHHHHHHCCCCCCEE
Q ss_conf 111114677-335656522--7554663478750000389999999----99738980998--04266533124798699
Q gi|254780807|r 75 WIDLGSGGG-FPGIITSIQ--LSSIEGGLVNLIESKNKKASFLRYV----VQKTAARGKVF--ACRIQEAPQMITTCDVI 145 (168)
Q Consensus 75 ilDiGSGaG-fPGi~laI~--~p~~~~~~v~Lves~~KK~~FL~~~----~~~L~L~~~vi--~~r~e~~~~~~~~~d~v 145 (168)
+.=||.|+- ||++..+.+ .|++....+.|+|-.+.|......+ +++.+.+.++. ..|-|-+. ..|+|
T Consensus 2 I~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~----gADfV 77 (183)
T pfam02056 2 IVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALT----DADFV 77 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC----CCCEE
T ss_conf 89999854443999999996085689899999779999999999999999996199839999789999966----89999
Q ss_pred E
Q ss_conf 9
Q gi|254780807|r 146 S 146 (168)
Q Consensus 146 ~ 146 (168)
+
T Consensus 78 i 78 (183)
T pfam02056 78 I 78 (183)
T ss_pred E
T ss_conf 9
No 175
>KOG2915 consensus
Probab=51.27 E-value=22 Score=17.28 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=60.0
Q ss_pred HHHHHHHC--CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHHH-
Q ss_conf 35643100--1234431111146773356565227554663478750000389999999997389-80-9980426653-
Q gi|254780807|r 61 DSLRVFQL--HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQEA- 135 (168)
Q Consensus 61 DSl~~~~~--~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~~- 135 (168)
|+..+... +..+..++.-|||.| ++-.||++.=-.-++++-.|--+-|+.=-.+--++-++ +| ++.+..+-..
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSG--SlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915 93 DIAMILSMLEIRPGSVVLESGTGSG--SLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCCC--HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 6999999865799978986378863--48899998637676269998328789999999997377863489996415677
Q ss_pred -HHCCCCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf -3124798699991479989999984885206
Q gi|254780807|r 136 -PQMITTCDVISARALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 136 -~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168)
......+|.|.----+|+..+=..+. .+|.
T Consensus 171 F~~ks~~aDaVFLDlPaPw~AiPha~~-~lk~ 201 (314)
T KOG2915 171 FLIKSLKADAVFLDLPAPWEAIPHAAK-ILKD 201 (314)
T ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHH-HHHH
T ss_conf 353134235699758980552233677-7540
No 176
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=50.05 E-value=23 Score=17.16 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 8999999999738980998042665331247986999914799
Q gi|254780807|r 110 KASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARALAD 152 (168)
Q Consensus 110 K~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~a~ 152 (168)
-..=+++..++.|++.++.++++.+.+.....||++++-+-.+
T Consensus 17 v~~ki~~~l~e~gi~~~i~~~~i~e~~~~~~~~Dliv~tt~~~ 59 (89)
T cd05566 17 VASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVSTTKVP 59 (89)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCCEEEEECCCC
T ss_conf 9999999999869915999975999874279987899944268
No 177
>KOG0821 consensus
Probab=49.31 E-value=17 Score=17.84 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=44.2
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 44311111467733565652275546634787500003899999999973898099804266
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ 133 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e 133 (168)
+.-++.||-|.| ||-=+|...+.. ++.+||...+=+-=|++..+.-...-.++++.+-
T Consensus 51 ~~~v~eIgPgpg--gitR~il~a~~~--RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~L 108 (326)
T KOG0821 51 NAYVYEIGPGPG--GITRSILNADVA--RLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVL 108 (326)
T ss_pred CCCEEEECCCCC--CHHHHHHHCCHH--HEEEEEECCCCCHHHHHHHHCCCCEEEEECCHHH
T ss_conf 240588469987--204898862523--5266631566474788887538750575200577
No 178
>KOG0622 consensus
Probab=49.21 E-value=24 Score=17.08 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=37.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-------CHHHHHHHHHHHHHHHHHCCCC---CCCCEEECCCCCHHH
Q ss_conf 417999899999999999999846321304308-------9999989864635643100123---443111114677335
Q gi|254780807|r 17 NTYNVSRETLEKLEYFYFLFLKWSKKINLVSSS-------TVEDFWIRHVEDSLRVFQLHPY---PSIWIDLGSGGGFPG 86 (168)
Q Consensus 17 ~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~-------~~~~~~~rHi~DSl~~~~~~~~---~~~ilDiGSGaGfPG 86 (168)
..|+.+-+..+.|-.-+.++ ..|+||.. +.-+.|.+-+-|.-.++..... .-.++||| |||||
T Consensus 186 ~KFG~~~~~~~~lLd~ak~l-----~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiG--GGf~g 258 (448)
T KOG0622 186 LKFGCSLDNCRHLLDMAKEL-----ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIG--GGFPG 258 (448)
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCC
T ss_conf 75687778999999999871-----865888998725887878999999999999999998618627886137--88887
No 179
>KOG1541 consensus
Probab=47.90 E-value=25 Score=16.96 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCE-EEECHHHHHHHCCCCCCEEEE
Q ss_conf 34431111146773356565227554663478750000389999999997389809-980426653312479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGK-VFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~-vi~~r~e~~~~~~~~~d~v~s 147 (168)
.+.-++|||.|.|+-|=+|.=- +....-+|-+.- -|..+.+ =.+... +.+.=.|-++--...||-++|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~-----Gh~wiGvDiSps---ML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541 50 KSGLILDIGCGSGLSGSVLSDS-----GHQWIGVDISPS---MLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CCCEEEEECCCCCCCHHEECCC-----CCEEEEECCCHH---HHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCEEEE
T ss_conf 8717998345777432002168-----955886228989---9999997-6640476631247887889974124788
No 180
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=47.88 E-value=25 Score=16.96 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCEEECCCCCHHHHHHHHC----CCCCCCCEEEEEHHHHHHHHHHHHHHHH--HCCCCEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 3111114677335656522----7554663478750000389999999997--389809980426653312479869999
Q gi|254780807|r 74 IWIDLGSGGGFPGIITSIQ----LSSIEGGLVNLIESKNKKASFLRYVVQK--TAARGKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 74 ~ilDiGSGaGfPGi~laI~----~p~~~~~~v~Lves~~KK~~FL~~~~~~--L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
.++=+|+|-| .++=+.+ .-+. ..+++.||++..-+--|++-++. =+-.++++.+...++.. .+++|+++|
T Consensus 189 vI~VvGAGRG--PLV~~~l~A~~~~~~-~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~-p~k~Di~VS 264 (447)
T pfam05185 189 VILVVGAGRG--PLVDRALRAAEETGR-KVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKG-PEKADILVS 264 (447)
T ss_pred EEEEECCCCC--HHHHHHHHHHHHCCC-CEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCC-CCCCCEEEE
T ss_conf 9999858964--899999999998199-669999956877999999985054317806999080005799-877358975
Q ss_pred CCCCCH------HHHHHHHHHHHCC
Q ss_conf 147998------9999984885206
Q gi|254780807|r 148 RALADL------DTLLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~l------~~ll~~~~pllk~ 166 (168)
-=.++. +..|+-+.+|||+
T Consensus 265 ELLGSFGDNELSPECLdg~q~~lk~ 289 (447)
T pfam05185 265 ELLGSFGDNELSPECLDGAQRFLKP 289 (447)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 2116666655797787789974689
No 181
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=45.50 E-value=7.7 Score=19.90 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=8.6
Q ss_pred ECCCCCHHHHH
Q ss_conf 11467733565
Q gi|254780807|r 78 LGSGGGFPGII 88 (168)
Q Consensus 78 iGSGaGfPGi~ 88 (168)
=|||.|+|-++
T Consensus 12 SGSGSGlp~Lv 22 (30)
T smart00467 12 SGSGSGLPLLV 22 (30)
T ss_pred CCCCCCCHHHH
T ss_conf 78888860243
No 182
>PRK07201 short chain dehydrogenase; Provisional
Probab=43.90 E-value=29 Score=16.60 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHCCC---CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 998986463564310012---34431111146773356565227554663478750000389999999997389809980
Q gi|254780807|r 53 DFWIRHVEDSLRVFQLHP---YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFA 129 (168)
Q Consensus 53 ~~~~rHi~DSl~~~~~~~---~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~ 129 (168)
+.|.||.-.++..-+-.+ .++.++=-|.+.|+ |--+|..+-.. +.+|.++.++..+..-+..-+...+-+..++.
T Consensus 354 ~yw~~~ldp~~~~~~~~~g~L~GKvalITGASSGI-G~A~A~~LA~~-GA~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~ 431 (663)
T PRK07201 354 DYWERHLDPDRARDRDLRGPLEGKHVIITGASSGI-GRATAIKVAEA-GATVFALARDGEKLDELVAEIRARGGQAHAYT 431 (663)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHH-HHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 88875269200137776888799479993887599-99999999987-99899998999999999999995599189999
Q ss_pred CHH---HH-------HHHCCCCCCEEEECCC
Q ss_conf 426---65-------3312479869999147
Q gi|254780807|r 130 CRI---QE-------APQMITTCDVISARAL 150 (168)
Q Consensus 130 ~r~---e~-------~~~~~~~~d~v~sRA~ 150 (168)
+.+ ++ ..+.....|+++.=|=
T Consensus 432 ~DVtd~~~v~~lv~~i~~~~G~IDVLVNNAG 462 (663)
T PRK07201 432 CDLTDSASVEHTVKDILGRHGHVDYLVNNAG 462 (663)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 6279999999999999996799888998964
No 183
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.39 E-value=10 Score=19.12 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHH------CCCCCEEEECCHHHHHHHHH-HHHHHHHHCCCCC--CCCEEECCCCC
Q ss_conf 999999999999984------63213043089999989864-6356431001234--43111114677
Q gi|254780807|r 25 TLEKLEYFYFLFLKW------SKKINLVSSSTVEDFWIRHV-EDSLRVFQLHPYP--SIWIDLGSGGG 83 (168)
Q Consensus 25 q~~~l~~y~~ll~~~------N~~~NLts~~~~~~~~~rHi-~DSl~~~~~~~~~--~~ilDiGSGaG 83 (168)
-.+++..-...|..- ++-|-||| ++...|+.|| -|++.++.+..+. -...++||-+-
T Consensus 24 d~~~l~~vi~~L~~~~Pl~~~~kDH~LtG--~wkg~RdCHi~pD~lLIY~v~~~~~~L~l~RlGsHse 89 (91)
T COG3041 24 DMDKLKKVITLLANDLPLPPRYKDHPLTG--DWKGYRDCHIKPDLLLIYTVKEQEDVLRLVRLGSHSE 89 (91)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCHHHCCCCCCEEEEEEEECCCCEEEEEECCCHHH
T ss_conf 59999999999986799994225774545--6455233034788899999943687899887044041
No 184
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=43.27 E-value=29 Score=16.54 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=55.1
Q ss_pred CCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CC-EEEECHHHHHHHCCCCCCEEEEC
Q ss_conf 43111114677-3356565227554663478750000389999999997389--80-99804266533124798699991
Q gi|254780807|r 73 SIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RG-KVFACRIQEAPQMITTCDVISAR 148 (168)
Q Consensus 73 ~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168)
.++.=||||.= +-.|+++= -+.....++-+|..+..++.-+++++.+++ +. .++.+.+.+.......||+|.--
T Consensus 123 ~~vAFIGSGPLPLTsivLa~--~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lA 200 (277)
T pfam03059 123 SRIAFIGSGPLPLTSIVLAS--YHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLA 200 (277)
T ss_pred CEEEEECCCCCCHHHHHHHH--HCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEH
T ss_conf 44899637886138999988--5088731433127889999999999865530047289952644444444547689872
Q ss_pred CCC
Q ss_conf 479
Q gi|254780807|r 149 ALA 151 (168)
Q Consensus 149 A~a 151 (168)
|.-
T Consensus 201 ALV 203 (277)
T pfam03059 201 ALV 203 (277)
T ss_pred HHC
T ss_conf 113
No 185
>pfam08515 TGF_beta_GS Transforming growth factor beta type I GS-motif. This motif is found in the transforming growth factor beta (TGF-beta) type I which regulates cell growth and differentiation. The name of the GS motif comes from its highly conserved GSGSGLP signature in the cytoplasmic juxtamembrane region immediately preceding the protein's kinase domain. Point mutations in the GS motif modify the signaling ability of the type I receptor.
Probab=42.56 E-value=9.5 Score=19.36 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=10.2
Q ss_pred CEEECCCCCHHHHH
Q ss_conf 11111467733565
Q gi|254780807|r 75 WIDLGSGGGFPGII 88 (168)
Q Consensus 75 ilDiGSGaGfPGi~ 88 (168)
...=|||.|+|=++
T Consensus 10 ~~tSGSGSGlp~Lv 23 (29)
T pfam08515 10 STTSGSGSGLPLLV 23 (29)
T ss_pred HCCCCCCCCCHHHH
T ss_conf 20478887860588
No 186
>KOG3101 consensus
Probab=41.29 E-value=8 Score=19.79 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=9.2
Q ss_pred CCEEECCCCCH
Q ss_conf 31111146773
Q gi|254780807|r 74 IWIDLGSGGGF 84 (168)
Q Consensus 74 ~ilDiGSGaGf 84 (168)
.-.|+|+||||
T Consensus 94 eswDFG~GAGF 104 (283)
T KOG3101 94 ESWDFGQGAGF 104 (283)
T ss_pred CCCCCCCCCEE
T ss_conf 43334677425
No 187
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=41.22 E-value=19 Score=17.58 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCHHH
Q ss_conf 9999999999998463213043089999
Q gi|254780807|r 26 LEKLEYFYFLFLKWSKKINLVSSSTVED 53 (168)
Q Consensus 26 ~~~l~~y~~ll~~~N~~~NLts~~~~~~ 53 (168)
.+.+...+..+.+.+..+=.|+.++-|-
T Consensus 177 ~~~~~ely~~~~~~~~p~l~t~~~~AE~ 204 (414)
T COG1004 177 AAVLRELYAPFLRQDVPILFTDLREAEL 204 (414)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 9999999753420499889956029999
No 188
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=40.38 E-value=32 Score=16.27 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE--EECHHHHH-HHCCCCCCEEEE
Q ss_conf 344311111467733565652275546634787500003899999999973898099--80426653-312479869999
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKV--FACRIQEA-PQMITTCDVISA 147 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~v--i~~r~e~~-~~~~~~~d~v~s 147 (168)
.+-+++|-=||.|+=||=.|.-.+... .|+..|-++.-+.-+++-++..++.+.+ .+..+..+ .+....||+|=-
T Consensus 49 ~~~~iLDalsasGiR~iRya~E~~~~~--~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~IDl 126 (375)
T pfam02005 49 RGIIVLDALSASGIRAIRFALEVPGVE--EVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVIDL 126 (375)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEEE
T ss_conf 886697546754199999997469986--699955998999999998886599873787547599999855886756867
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 1479989999984885206
Q gi|254780807|r 148 RALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~a~l~~ll~~~~pllk~ 166 (168)
=.|+++..+++-+..-++.
T Consensus 127 DPfGSp~pfldsAi~av~~ 145 (375)
T pfam02005 127 DPFGSPAPFLDSAVQSVKR 145 (375)
T ss_pred CCCCCCCHHHHHHHHHHCC
T ss_conf 8999921779999998315
No 189
>TIGR01200 TIGR01200 Porphyromonas gingivalis paralogous family TIGR01200; InterPro: IPR005901 This family of proteins of unknown function is found in Porphyromonas gingivalis (Bacteroides gingivalis)..
Probab=40.31 E-value=5.8 Score=20.60 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.0
Q ss_pred CCHHHHHHHHCCCCCC
Q ss_conf 7733565652275546
Q gi|254780807|r 82 GGFPGIITSIQLSSIE 97 (168)
Q Consensus 82 aGfPGi~laI~~p~~~ 97 (168)
+|+||++++|.-.+-+
T Consensus 207 ~GLPGLI~~I~~~~~E 222 (300)
T TIGR01200 207 RGLPGLIVAIRSDDGE 222 (300)
T ss_pred CCCCEEEEEEECCCCC
T ss_conf 5887048997248983
No 190
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=39.25 E-value=34 Score=16.17 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCCCCC-CCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHH
Q ss_conf 86463564310012344-3111114677335656522755466347875000038999999999738980--99804266
Q gi|254780807|r 57 RHVEDSLRVFQLHPYPS-IWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQ 133 (168)
Q Consensus 57 rHi~DSl~~~~~~~~~~-~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e 133 (168)
..|++-|. ++++..+ .++-||||.|==++-+|=.+|++.. .=.|.......=++.-+++-++.| ..+.-.+.
T Consensus 12 ~pIl~vL~--~~l~~~~~~VLEIaSGTGQHav~fA~~lP~l~W---qPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~LDv~ 86 (201)
T pfam06080 12 EPILSVLQ--SYFAKTTERVLEIASGTGQHAVFFAPLLPNLTW---QPSDPDPNLRGSIAAWADQQGLRNLRPPLHLDVT 86 (201)
T ss_pred HHHHHHHH--HHHCCCCCCEEEECCCCHHHHHHHHHHCCCCEE---ECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 89999999--982747885799768726999999987899885---1588887789999999874377766887376327
Q ss_pred H--HH---HCCCCCCEEEEC
Q ss_conf 5--33---124798699991
Q gi|254780807|r 134 E--AP---QMITTCDVISAR 148 (168)
Q Consensus 134 ~--~~---~~~~~~d~v~sR 148 (168)
+ .+ .....||.|++=
T Consensus 87 ~~~w~~~~~~~~~~dai~~i 106 (201)
T pfam06080 87 RPPWPVEAPAPASYDAIFSI 106 (201)
T ss_pred CCCCCCCCCCCCCCCHHHHH
T ss_conf 89987555667660023300
No 191
>KOG2361 consensus
Probab=37.95 E-value=36 Score=16.05 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE--EECHHHHH--HHCCCCCCEEEE--
Q ss_conf 311111467733565652275546634787500003899999999973898099--80426653--312479869999--
Q gi|254780807|r 74 IWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKV--FACRIQEA--PQMITTCDVISA-- 147 (168)
Q Consensus 74 ~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~v--i~~r~e~~--~~~~~~~d~v~s-- 147 (168)
+++.+|.|+|=--.||-=..|+-+ ..++.+|-+.+-+.+++.-......+... ..--.+++ +...+.+|++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~-l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361 74 TILEVGCGVGNTVFPLLKTSPNNR-LKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred HHEEECCCCCCCCCHHHHCCCCCC-EEEEECCCCHHHHHHHHHCCCCCHHHHCCCCEECCCHHCCCCCCCCCCCEEEEEE
T ss_conf 511222477751224442489987-3899748986899998736332645501200016560103788867633478999
Q ss_pred --CCCCC--HHHHHHHHHHHHCC
Q ss_conf --14799--89999984885206
Q gi|254780807|r 148 --RALAD--LDTLLEYSFPWLYQ 166 (168)
Q Consensus 148 --RA~a~--l~~ll~~~~pllk~ 166 (168)
-|++| +..-++-...++|+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP 175 (264)
T KOG2361 153 VLSAIHPEKMQSVIKNLRTLLKP 175 (264)
T ss_pred EEECCCHHHHHHHHHHHHHHHCC
T ss_conf 87514847789999999997488
No 192
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=37.75 E-value=19 Score=17.57 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHCCCCCC----CCEEEEEHHH
Q ss_conf 467733565652275546----6347875000
Q gi|254780807|r 80 SGGGFPGIITSIQLSSIE----GGLVNLIESK 107 (168)
Q Consensus 80 SGaGfPGi~laI~~p~~~----~~~v~Lves~ 107 (168)
.|||+=|..+|+++.... +.+|.++|+.
T Consensus 5 vGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~ 36 (425)
T TIGR01984 5 VGGGLVGLSLALALSRLSGREGKLKIALIEAN 36 (425)
T ss_pred ECCHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 85658999999998506775576158986565
No 193
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=37.00 E-value=25 Score=16.89 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHC---CCCCCCCEEEEEHH--HHHHHH-HHH
Q ss_conf 4677335656522---75546634787500--003899-999
Q gi|254780807|r 80 SGGGFPGIITSIQ---LSSIEGGLVNLIES--KNKKAS-FLR 115 (168)
Q Consensus 80 SGaGfPGi~laI~---~p~~~~~~v~Lves--~~KK~~-FL~ 115 (168)
.|||.=|.-+|.. .|..+..+|.|+|. ..++-. +..
T Consensus 6 vGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s~~y~ 47 (481)
T TIGR01989 6 VGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKSRKYE 47 (481)
T ss_pred ECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCC
T ss_conf 888578999999973187320230678652348234211015
No 194
>KOG3178 consensus
Probab=36.91 E-value=15 Score=18.13 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEE------CCHHHHHHHHHHHHHHHH------HCCC------CCCCCEEECCCCC
Q ss_conf 989999999999999984632130430------899999898646356431------0012------3443111114677
Q gi|254780807|r 22 SRETLEKLEYFYFLFLKWSKKINLVSS------STVEDFWIRHVEDSLRVF------QLHP------YPSIWIDLGSGGG 83 (168)
Q Consensus 22 s~eq~~~l~~y~~ll~~~N~~~NLts~------~~~~~~~~rHi~DSl~~~------~~~~------~~~~ilDiGSGaG 83 (168)
++...+....|.+-+..|....+=+-= -...+.....|.-|..-. +..+ .-...+|+|.|.|
T Consensus 110 ~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG 189 (342)
T KOG3178 110 SKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIG 189 (342)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHH
T ss_conf 62001157889999872335875444331330114552237899999888878888864201026556766887587476
Q ss_pred -HHHHHHHHCCCCCCCCEEEE-------------EH-------------------------HHHHHHHHHHHHHHHHCCC
Q ss_conf -33565652275546634787-------------50-------------------------0003899999999973898
Q gi|254780807|r 84 -FPGIITSIQLSSIEGGLVNL-------------IE-------------------------SKNKKASFLRYVVQKTAAR 124 (168)
Q Consensus 84 -fPGi~laI~~p~~~~~~v~L-------------ve-------------------------s~~KK~~FL~~~~~~L~L~ 124 (168)
.-+.++. .+|+++...+++ |+ ..++=+.||+++...|.-+
T Consensus 190 ~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~ 268 (342)
T KOG3178 190 RVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPG 268 (342)
T ss_pred HHHHHHHH-HCCCCCEEECCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999997-58877255147899985223206786512364534588767599870005687688999999999858998
Q ss_pred CEEE
Q ss_conf 0998
Q gi|254780807|r 125 GKVF 128 (168)
Q Consensus 125 ~~vi 128 (168)
..++
T Consensus 269 GkIi 272 (342)
T KOG3178 269 GKII 272 (342)
T ss_pred CEEE
T ss_conf 8899
No 195
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=36.67 E-value=26 Score=16.82 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=38.4
Q ss_pred CCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7733565652275546634787500003899999999973898
Q gi|254780807|r 82 GGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR 124 (168)
Q Consensus 82 aGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~ 124 (168)
+-|||.+=+|..-..++..|+++-.++|++.-+..-+++||++
T Consensus 24 ~~yPGav~~l~~~~a~gk~V~f~sNs~~~~~~~~~~l~~lGi~ 66 (243)
T TIGR01459 24 EAYPGAVEALAKLKAEGKTVYFVSNSSKRVAELEARLKKLGIA 66 (243)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 8951689999999855891899976860134666578761323
No 196
>KOG1709 consensus
Probab=36.52 E-value=37 Score=15.92 Aligned_cols=111 Identities=13% Similarity=0.024 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 99998986463564310012344311111467733565652275546634787500003899999999973898099804
Q gi|254780807|r 51 VEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFAC 130 (168)
Q Consensus 51 ~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~ 130 (168)
.-.-|++-+.+.++-... .++.+|+.||=|-|+-.--+-=.-|.. -+.+|...--..-++.-.=.-.=|+.++.+
T Consensus 82 VMm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~----H~IiE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709 82 VMMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDE----HWIIEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHCCCCC----EEEEECCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 556521489999999986-179648984231677888886359863----178735978999998636654454688713
Q ss_pred HHHHHHH--CCCCCCEEEECCCCCHHH----HHHHHHHHHCC
Q ss_conf 2665331--247986999914799899----99984885206
Q gi|254780807|r 131 RIQEAPQ--MITTCDVISARALADLDT----LLEYSFPWLYQ 166 (168)
Q Consensus 131 r~e~~~~--~~~~~d~v~sRA~a~l~~----ll~~~~pllk~ 166 (168)
|-|+..+ ....||-|.--+|++... +-.-..+|||+
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP 198 (271)
T KOG1709 157 RWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKP 198 (271)
T ss_pred CHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 467644014456756267513016789999999877640087
No 197
>KOG0822 consensus
Probab=36.06 E-value=36 Score=16.02 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred CCEEECCCCCH-HHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEECC
Q ss_conf 31111146773-35656522-7554663478750000389999999997389--80998042665331247986999914
Q gi|254780807|r 74 IWIDLGSGGGF-PGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISARA 149 (168)
Q Consensus 74 ~ilDiGSGaGf-PGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168)
.+.=+|.|-|= ---.+.++ .-+ ...+++.||++.--+.-|+.+.. ..- .++++.+.-..+...+++.|+++|--
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~-RkVklyavEKNPNAivtL~~~n~-~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822 370 VIMVLGAGRGPLVDASLKAAEETD-RKVKLYAVEKNPNAIVTLQNRNF-ECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHCH-HHHCCEEEEEECCCCCCCCCHHHCCCHHHHH
T ss_conf 999963887607889999998724-71579999338544042454243-6546816999343124688444212039976
Q ss_pred CCCH------HHHHHHHHHHHCC
Q ss_conf 7998------9999984885206
Q gi|254780807|r 150 LADL------DTLLEYSFPWLYQ 166 (168)
Q Consensus 150 ~a~l------~~ll~~~~pllk~ 166 (168)
.++. +..++-+.+|||.
T Consensus 448 LGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822 448 LGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred HCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 42246766797787778851588
No 198
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.03 E-value=22 Score=17.25 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=11.8
Q ss_pred CCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHH
Q ss_conf 773356565227554663478750000389999
Q gi|254780807|r 82 GGFPGIITSIQLSSIEGGLVNLIESKNKKASFL 114 (168)
Q Consensus 82 aGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL 114 (168)
=|.=|+|+|+++... +..|.-+|-+++|+.-+
T Consensus 17 LGYVGLPlA~~fA~~-G~~ViG~DIn~~~Vd~l 48 (436)
T COG0677 17 LGYVGLPLAAAFASA-GFKVIGVDINQKKVDKL 48 (436)
T ss_pred CCCCCHHHHHHHHHC-CCCEEEEECCHHHHHHH
T ss_conf 464457889999876-99557575788998887
No 199
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=35.97 E-value=12 Score=18.70 Aligned_cols=38 Identities=13% Similarity=0.402 Sum_probs=20.5
Q ss_pred CHHHHHHHHCCC--CCCCCEEEEEHHHHHHHHHHHHHHHHHC
Q ss_conf 733565652275--5466347875000038999999999738
Q gi|254780807|r 83 GFPGIITSIQLS--SIEGGLVNLIESKNKKASFLRYVVQKTA 122 (168)
Q Consensus 83 GfPGi~laI~~p--~~~~~~v~Lves~~KK~~FL~~~~~~L~ 122 (168)
|+||++..+-+- +.+ ..++.+=+.+=+ .|++.+.+...
T Consensus 70 GLPGLl~t~sf~G~~r~-~pL~IyGP~G~~-e~~~~~l~~~~ 109 (327)
T TIGR02651 70 GLPGLLSTMSFQGGGRK-EPLTIYGPPGIK-EFIETSLRVSY 109 (327)
T ss_pred HHHHHHHHHCCCCCCCC-CCEEEECCHHHH-HHHHHHHHHHC
T ss_conf 23688883103788864-452886874479-99999998622
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=35.47 E-value=39 Score=15.82 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-----CCCEEEECHHHH-HHHCCCCCC
Q ss_conf 23443111114677335656522755466347875000038999999999738-----980998042665-331247986
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA-----ARGKVFACRIQE-APQMITTCD 143 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-----L~~~vi~~r~e~-~~~~~~~~d 143 (168)
++..+|+=||-|.|. ..=.+. ......++++||-.++-+.+-++--.... -+++++.+.+-+ +.....+||
T Consensus 75 ~~pk~VLiiGgGdG~--tlRevl-kh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 75 PNPKRVLIIGGGDGG--TLREVL-KHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCCEEEEECCCCCH--HHHHHH-HCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCC
T ss_conf 997769998897669--999998-36884337999708899999998666754335797368996107999874887677
Q ss_pred EEEECCCCC--------HHHHHHHHHHHHCC
Q ss_conf 999914799--------89999984885206
Q gi|254780807|r 144 VISARALAD--------LDTLLEYSFPWLYQ 166 (168)
Q Consensus 144 ~v~sRA~a~--------l~~ll~~~~pllk~ 166 (168)
+|+.=..-| -..+.+-+...|++
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~ 182 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKE 182 (282)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8998588998843023779999999986288
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=33.52 E-value=42 Score=15.63 Aligned_cols=79 Identities=9% Similarity=-0.058 Sum_probs=48.0
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--CCC-EEEECHHHHHHHCCCCCCE
Q ss_conf 0123443111114677335656522755466347875000038999999999738--980-9980426653312479869
Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA--ARG-KVFACRIQEAPQMITTCDV 144 (168)
Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~--L~~-~vi~~r~e~~~~~~~~~d~ 144 (168)
-.+++++++=||.|-| |+.=-++.-. ..+++||-.++-+.+.++-.-... +++ .+-.. ++-.....++||+
T Consensus 69 ~Hp~Pk~VLIIGGGDG--G~~REvlKH~---~~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~-~~~~~~~~~~fDv 142 (262)
T PRK00536 69 TKKELKEVLIVDGFDL--ELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-KQLLDLDIKKYDL 142 (262)
T ss_pred CCCCCCEEEEECCCCH--HHHHHHHCCC---CEEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHH-HHHHHHCCCCCCE
T ss_conf 1899787999868755--9999987289---76699996789999999978565654139961139-9987615476688
Q ss_pred EEECCCCC
Q ss_conf 99914799
Q gi|254780807|r 145 ISARALAD 152 (168)
Q Consensus 145 v~sRA~a~ 152 (168)
|+.-..-+
T Consensus 143 IIvDsl~~ 150 (262)
T PRK00536 143 IICLQEPD 150 (262)
T ss_pred EEECCCCC
T ss_conf 99889998
No 202
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=33.07 E-value=28 Score=16.65 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHH
Q ss_conf 646356431001234431111146773356565227554663478750000389
Q gi|254780807|r 58 HVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKA 111 (168)
Q Consensus 58 Hi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~ 111 (168)
.+++|-.++.....+++++=| |||.-|+-+|-++..+. ..||++|.+.+-.
T Consensus 162 ~v~~sd~~l~l~~~Pk~vvII--GgG~ig~E~A~~~~~lG-~~Vtiv~~~~~ll 212 (465)
T PRK05249 162 RIYDSDSILSLDHLPRSLIIY--GAGVIGCEYASIFRGLG-VKVDLINTRDRLL 212 (465)
T ss_pred EEEEHHHHHHHCCCCCEEEEE--CCCCCHHHHHHHHHHHC-CEEEEEECCCCCH
T ss_conf 288367854330079759999--99821799999999609-8778972166000
No 203
>KOG3048 consensus
Probab=31.31 E-value=18 Score=17.77 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 344311111467733565652275546634787500003899999999973
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT 121 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L 121 (168)
.++.++|||||== +-.+.+ ...|--.+|+.+|..-+..+
T Consensus 82 ~~k~lVDIGTGYy--------VEK~~e----~akdyfkRKve~l~kq~e~i 120 (153)
T KOG3048 82 NSKFLVDIGTGYY--------VEKDAE----DAKDYFKRKVEYLTKQIEQI 120 (153)
T ss_pred CCCEEEECCCCEE--------EEECHH----HHHHHHHHHHHHHHHHHHHH
T ss_conf 4303686057457--------760467----78999999999999999999
No 204
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=31.16 E-value=46 Score=15.40 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=49.5
Q ss_pred HHHHHHHHHH----HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCC
Q ss_conf 9999999999----999984632130430899999898646356431001234431111146773356565227554663
Q gi|254780807|r 24 ETLEKLEYFY----FLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGG 99 (168)
Q Consensus 24 eq~~~l~~y~----~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~ 99 (168)
++-+.++.|+ +.+.+|-. ++-+. |++.+. -.+.+..|.|+|.|-+- |--++-.+ .
T Consensus 31 ~~P~~F~~YH~Gfr~Qv~~WP~--------nPvd~----iI~~lk---~~p~~~vIaD~GCGdA~--lA~~~~~~-~--- 89 (214)
T pfam05148 31 EDPDAFDLYHEGFNLQVKKWPV--------NPLDV----IIRKLK---RRPGNGVIADLGCGEAR--IAFRKREF-E--- 89 (214)
T ss_pred HCHHHHHHHHHHHHHHHHHCCC--------CHHHH----HHHHHH---HCCCCEEEEECCCCHHH--HHHHCCCC-C---
T ss_conf 6969999999999999974897--------77999----999998---48997189975886579--99864678-7---
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEE-EECCCC--CHHHHHHHHHHHHCC
Q ss_conf 4787500003899999999973898099804266533124798699-991479--989999984885206
Q gi|254780807|r 100 LVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVI-SARALA--DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 100 ~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v-~sRA~a--~l~~ll~~~~pllk~ 166 (168)
.|+-.|-. ..+..|+.+.+.+.|-..+..|++ .|=+.+ .+..++.-+.+.||.
T Consensus 90 kV~SfDLv--------------a~n~~Vt~cDi~~~PL~d~svDvaVfCLSLMGTN~~~fi~EA~RvLk~ 145 (214)
T pfam05148 90 NVHSFDLV--------------AVNKRVIPCDMARVPLEDESVDVAVFCLSLMGTNIADFLKEANRILKN 145 (214)
T ss_pred EEEEEECC--------------CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHCCC
T ss_conf 38851325--------------689883513533687887726368775876288779999998760310
No 205
>PRK10222 L-ascorbate-specific enzyme IIB component of PTS; Provisional
Probab=30.87 E-value=47 Score=15.37 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=21.8
Q ss_pred HHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 999997389809980426653312479869999
Q gi|254780807|r 115 RYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 115 ~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
.+..+++|+...+-.+.+.+.+.....||+|+|
T Consensus 8 ~~~L~k~gi~~~~~SCavgd~K~~l~~~DIIVa 40 (85)
T PRK10222 8 DQFLTQSNIDHTVNSCAVGEYKSELSGADIIIA 40 (85)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999998299521002035655434677778987
No 206
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=30.14 E-value=17 Score=17.83 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=19.5
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHH
Q ss_conf 44311111467733565652275546634787500003
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNK 109 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~K 109 (168)
..+|.=||||.- |+-.|=-... .+.+||..|...|
T Consensus 142 ~~kVAViGaGPA--GL~cA~elAk-~Gh~VtvfEALhK 176 (462)
T TIGR01316 142 KKKVAVIGAGPA--GLACASELAK-KGHEVTVFEALHK 176 (462)
T ss_pred CCEEEEECCCCH--HHHHHHHHHH-CCCEEEEEEECCC
T ss_conf 877999846821--4688999974-7986999971489
No 207
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=29.66 E-value=49 Score=15.25 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=64.7
Q ss_pred EEEECCHHHHHHHHHHHHHHH-HHCCCCCCCCEEECCCCCHHHHHHHHCCC-CCCCCEEEEEHHHHHHHHHHHHHHHH-H
Q ss_conf 043089999989864635643-10012344311111467733565652275-54663478750000389999999997-3
Q gi|254780807|r 45 LVSSSTVEDFWIRHVEDSLRV-FQLHPYPSIWIDLGSGGGFPGIITSIQLS-SIEGGLVNLIESKNKKASFLRYVVQK-T 121 (168)
Q Consensus 45 Lts~~~~~~~~~rHi~DSl~~-~~~~~~~~~ilDiGSGaGfPGi~laI~~p-~~~~~~v~Lves~~KK~~FL~~~~~~-L 121 (168)
|+|.+|.-. -+.-+|.- ...+..+.+++=+|.||-==|+.+....- +. .|...=+..-|..-|-+...+ |
T Consensus 97 l~GyNTDG~----G~~~~L~~~l~~l~~~~~~li~GAGGAa~a~a~~L~~~t~~---~~~i~NRT~~ka~~La~~~~~kl 169 (286)
T TIGR00507 97 LVGYNTDGI----GLVSSLEQELSKLKPNQRVLIIGAGGAAKAVALELLKATDC---NVIIANRTVEKAEELAERFQRKL 169 (286)
T ss_pred EEEECCCCH----HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHHH
T ss_conf 888617604----57888888740368997799994286789999999860099---78998287789999999989885
Q ss_pred CCCC-EEEECHHHHHHHCCCCCCEEE
Q ss_conf 8980-998042665331247986999
Q gi|254780807|r 122 AARG-KVFACRIQEAPQMITTCDVIS 146 (168)
Q Consensus 122 ~L~~-~vi~~r~e~~~~~~~~~d~v~ 146 (168)
+-.. ++..-..++++....+||+|+
T Consensus 170 n~~~G~~~~~~~~~~~l~~G~~DlII 195 (286)
T TIGR00507 170 NKKYGEIQAFSLDEVPLHKGKVDLII 195 (286)
T ss_pred HHHCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 34248536521133555578567998
No 208
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=28.88 E-value=50 Score=15.17 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCE-EEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHH
Q ss_conf 2344311111467733565652275546634-78750000389999999997389--80998042665
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGL-VNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQE 134 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~-v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~ 134 (168)
.++..++=||-|-|- +-..++ .+... |+.+|...+=+.-|++-... .. +.+|+.+.+=.
T Consensus 28 ~~~~~vlEIGPG~G~--LT~~Ll---~~~~~~v~aiEiD~~l~~~L~~~~~~-~~~~~~~~i~~Dalk 89 (277)
T TIGR00755 28 LENDVVLEIGPGLGA--LTEPLL---KRAKKLVTAIEIDPRLAEILRKLLSE-KLYENLEVIEGDALK 89 (277)
T ss_pred CCCCEEEEECCCCHH--HHHHHH---HHCCCEEEEEEECHHHHHHHHHHCCC-CCCCCEEEEECCEEE
T ss_conf 899779997388207--899999---82598489997267899998752154-332425787144454
No 209
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=28.69 E-value=51 Score=15.15 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCC------CCCCCCEEEEEHHHHHH--HHHHHHHHHHHCCCC---
Q ss_conf 8646356431001234431111146773356565227------55466347875000038--999999999738980---
Q gi|254780807|r 57 RHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQL------SSIEGGLVNLIESKNKK--ASFLRYVVQKTAARG--- 125 (168)
Q Consensus 57 rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~------p~~~~~~v~Lves~~KK--~~FL~~~~~~L~L~~--- 125 (168)
|||.+-+.-+--...+.+|+|-=+|.| |+.++... .+.....++-.|.++.- +.-++.+.. |++.
T Consensus 32 r~Vv~lmv~ll~p~~~~~V~DPacGtG--gfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lh--gi~~~~~ 107 (312)
T pfam02384 32 REVSKLIVELLEPKPGESIYDPACGSG--GFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILH--GIEYNDF 107 (312)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCC--HHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH--CCCCCCC
T ss_conf 899999999828999998821687733--789999999998437855655636889989999999999984--7988745
Q ss_pred EEEECHHHHHHH--CCCCCCEEEE
Q ss_conf 998042665331--2479869999
Q gi|254780807|r 126 KVFACRIQEAPQ--MITTCDVISA 147 (168)
Q Consensus 126 ~vi~~r~e~~~~--~~~~~d~v~s 147 (168)
.+.++..-..+. ...+||+|+|
T Consensus 108 ~i~~gdsl~~~~~~~~~kfD~Ils 131 (312)
T pfam02384 108 GIRHGDTLLSPKFEEDKKFDVVVA 131 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 521477655767665455118983
No 210
>PRK01203 prefoldin subunit alpha; Provisional
Probab=28.64 E-value=43 Score=15.56 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHH----HCCCCCCC
Q ss_conf 89999999999999984632130430899999898646356431001234431111146773356565----22755466
Q gi|254780807|r 23 RETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITS----IQLSSIEG 98 (168)
Q Consensus 23 ~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~la----I~~p~~~~ 98 (168)
++-.+++..|-+++-.-++.+++++.+-.|-- ..+++|.-...-+.+...+-||||.=.-|= |+ ++.| . +
T Consensus 3 ~ev~~QlNy~ksli~sidsqi~~l~~ti~E~~---~ti~~L~d~e~k~s~E~lI~VGsG~F~ka~-lk~d~~lIvp-I-G 76 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQ---QTISFLSDNELDNSKELLISIGSGIFADGN-IKKDKDLIVP-I-G 76 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCCEEEEECCCCEECCC-CCCCCCEEEE-C-C
T ss_conf 77999999999999999999999999999999---999986423545685158873453000060-2677536897-3-7
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHCC
Q ss_conf 3478750000389999999997389
Q gi|254780807|r 99 GLVNLIESKNKKASFLRYVVQKTAA 123 (168)
Q Consensus 99 ~~v~Lves~~KK~~FL~~~~~~L~L 123 (168)
.-|..-+-+.+-+.+|+.-+..|.-
T Consensus 77 SGV~I~e~~e~aierl~~nl~dLed 101 (130)
T PRK01203 77 SGVYIAEERERTIERLKENLEDLKD 101 (130)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 7345402477899999999999999
No 211
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=28.51 E-value=45 Score=15.44 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHH---------HHHHHHHHHHHCCC
Q ss_conf 864635643100123443111114677335656522755466347875000038---------99999999973898
Q gi|254780807|r 57 RHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKK---------ASFLRYVVQKTAAR 124 (168)
Q Consensus 57 rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK---------~~FL~~~~~~L~L~ 124 (168)
|++-|+..+-..+...++++=| ||||=|+=+|-..... +..||++|....- ..++.+..++.|.+
T Consensus 129 rt~~Da~~l~~~l~~~k~vvVI--GgG~IGlE~A~~l~~~-G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~ 202 (400)
T PRK09754 129 RHAGDAARLREVLQPERSVVIV--GAGTIGLELAASATQR-RCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVR 202 (400)
T ss_pred CCHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 7999999999876158739998--8558999999999975-994899953463410026989999999999978989
No 212
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=28.34 E-value=31 Score=16.43 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHH--------HHHHHHHHHHHCC
Q ss_conf 443111114677335656522755466347875000038--------9999999997389
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKK--------ASFLRYVVQKTAA 123 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK--------~~FL~~~~~~L~L 123 (168)
+++++=| |||..|+-+|-++..+. ..||++|....- ...++...++.|.
T Consensus 157 p~~v~Vi--GgG~ig~E~A~~~~~lG-~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gv 213 (438)
T PRK07251 157 PKRLGIL--GGGNIGLEFAGLYNKLG-SKVTVLDAASTFLPREEPSIAALAKQYMEEDGI 213 (438)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9769998--88645889999998348-768999846100244463668999999986695
No 213
>KOG2539 consensus
Probab=27.41 E-value=34 Score=16.15 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 44311111467733565652275546634787500003899999999973
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT 121 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L 121 (168)
+..+.|+|||+|-=+=..-++++... -.+++||.+ ..++......+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~-~~~~~Vdrs---~~~~~~~e~~l 246 (491)
T KOG2539 201 PDLLRDFGSGAGNGGWAAVLLWRQTK-REYSLVDRS---RAMLKQSEKNL 246 (491)
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCC-CEEEEECCC---HHHHHHHHHHH
T ss_conf 07999987431555103534300212-206763255---58888888762
No 214
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=27.27 E-value=54 Score=15.00 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=66.4
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 12344311111467733565652275546634787500003899999999973898-09980426653312479869999
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
+..+...+|+-.|.+==.|.|+-.-... +.|.-+|-+..-...-++-+....++ +..+|+++-++|-....||+||.
T Consensus 43 v~~G~~~ldvCCGt~dW~~~l~~~~G~~--G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~~~~~fdyvti 120 (231)
T TIGR02752 43 VQKGKKALDVCCGTADWAIALAEAVGKE--GEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPYDDNSFDYVTI 120 (231)
T ss_pred HHHCCHHHHHCCCCHHHHHHHHHHHCCC--CCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCCEEEE
T ss_conf 6404121121037337888988861777--71674003588999999888754320022230520017877666125775
Q ss_pred -CCCCCHHHHH
Q ss_conf -1479989999
Q gi|254780807|r 148 -RALADLDTLL 157 (168)
Q Consensus 148 -RA~a~l~~ll 157 (168)
=.+-..|..+
T Consensus 121 GfGlrnvPdy~ 131 (231)
T TIGR02752 121 GFGLRNVPDYM 131 (231)
T ss_pred CCCCCCHHHHH
T ss_conf 25512302699
No 215
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=27.08 E-value=40 Score=15.77 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=34.7
Q ss_pred HCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHH------HHHH-
Q ss_conf 00123443111114677-33565652275546634787500003899999999973898-099804266------5331-
Q gi|254780807|r 67 QLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQ------EAPQ- 137 (168)
Q Consensus 67 ~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e------~~~~- 137 (168)
.+.+.+..++|+|++.| |=-..+.- .....++.||-..- . ..+ ...+.+.+. ++.+
T Consensus 17 ~l~~~~~~vlDLg~aPGgwsq~~~~~----~~~~~v~~vDl~~~--------~---~~~~~~~i~gDi~~~~~~~~i~~~ 81 (176)
T pfam01728 17 GLKPGGKTVLDLGAAPGGFSQVLLER----GAKGRVVAVDLGPM--------K---PIQGVTFLRGDITDPETLEKLLEL 81 (176)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH----CCCCEEEEEECCCC--------C---CCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 98879999999689997699999985----66873999973446--------5---677845651676687899999997
Q ss_pred CCCCCCEEEECC
Q ss_conf 247986999914
Q gi|254780807|r 138 MITTCDVISARA 149 (168)
Q Consensus 138 ~~~~~d~v~sRA 149 (168)
..+++|+|+|=+
T Consensus 82 ~~~~~DlV~sD~ 93 (176)
T pfam01728 82 LPGKVDLVLCDG 93 (176)
T ss_pred CCCCCCEEEECC
T ss_conf 399846897336
No 216
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.92 E-value=55 Score=14.96 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=29.2
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHH
Q ss_conf 23443111114677335656522755466347875000038
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKK 110 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK 110 (168)
-.+++++=+|-+. .=|.|+|.++-+. +..|+.+++..+-
T Consensus 26 l~Gk~vvVvGrS~-~VG~Pla~lL~~~-~atVt~~hs~t~~ 64 (140)
T cd05212 26 LDGKKVLVVGRSG-IVGAPLQCLLQRD-GATVYSCDWKTIQ 64 (140)
T ss_pred CCCCEEEEECCCC-HHHHHHHHHHHHC-CCEEEEECCCCCC
T ss_conf 9999999999981-2499999999978-8989994699959
No 217
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=26.78 E-value=26 Score=16.87 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCC-CCCCEEECCCCCHHH
Q ss_conf 64635643100123-443111114677335
Q gi|254780807|r 58 HVEDSLRVFQLHPY-PSIWIDLGSGGGFPG 86 (168)
Q Consensus 58 Hi~DSl~~~~~~~~-~~~ilDiGSGaGfPG 86 (168)
|+=||+.-.+..++ +-+.+|+||-||.-|
T Consensus 99 yYkds~Rry~~lke~gih~LD~GtSGG~~G 128 (341)
T TIGR00872 99 YYKDSLRRYKELKEKGIHYLDVGTSGGVLG 128 (341)
T ss_pred CCHHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 123347888768871875653454577230
No 218
>KOG1122 consensus
Probab=26.77 E-value=55 Score=14.94 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEE-ECHHHHHH--HCCCCCCEEE
Q ss_conf 443111114677335656522755466347875000038999999999738980998-04266533--1247986999
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVF-ACRIQEAP--QMITTCDVIS 146 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi-~~r~e~~~--~~~~~~d~v~ 146 (168)
+.+|+|.-+-.|=-.--+|.+..+. +.++..|++.-|+.-+...+.+||.+|+++ +....+++ .....||-|.
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~--G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122 242 GERILDMCAAPGGKTTHIAALMKNT--GVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCEECCHHCCCCCHHHHHHHHHCCC--CEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 8711212107995077899987277--469961354377999998899748774489736763255333676423145
No 219
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=26.40 E-value=56 Score=14.90 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=58.0
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH-HH---CCCCCC
Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653-31---247986
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA-PQ---MITTCD 143 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~-~~---~~~~~d 143 (168)
+....+++|.=.|=|==++|||= +..+|..||-..--+.=-+.=++..++.| +.+.+.+|+. +. ....||
T Consensus 292 Lqg~e~V~DayCG~GtftLpLA~-----qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~~p~~~~e~~~~D 366 (434)
T TIGR00479 292 LQGEEKVVDAYCGVGTFTLPLAK-----QAKSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETVLPKQPWEGISPD 366 (434)
T ss_pred CCCCCEEEEEECCCCCCHHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 59865578631575520044440-----1218888714376789998888860353201333123211014422267789
Q ss_pred EEE
Q ss_conf 999
Q gi|254780807|r 144 VIS 146 (168)
Q Consensus 144 ~v~ 146 (168)
.|+
T Consensus 367 ~~l 369 (434)
T TIGR00479 367 VVL 369 (434)
T ss_pred EEE
T ss_conf 888
No 220
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=26.01 E-value=57 Score=14.86 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=31.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-------CHHHHHHHHHHHHHHHHHCCC---CCCCCEEECCCCCHHH
Q ss_conf 417999899999999999999846321304308-------999998986463564310012---3443111114677335
Q gi|254780807|r 17 NTYNVSRETLEKLEYFYFLFLKWSKKINLVSSS-------TVEDFWIRHVEDSLRVFQLHP---YPSIWIDLGSGGGFPG 86 (168)
Q Consensus 17 ~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~-------~~~~~~~rHi~DSl~~~~~~~---~~~~ilDiGSGaGfPG 86 (168)
..|+++.++...+.. ....-| .+++|.. ...+.|.+-+.++..++.... ..-.++||| |||||
T Consensus 143 ~KFG~~~~~~~~ll~---~~~~~~--l~~~Glh~HvGSq~~~~~~~~~a~~~~~~v~dl~~~~g~~~~~lDiG--GGf~~ 215 (394)
T cd06831 143 MKFGTTLKNCRHLLE---CAKELD--VQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIG--GGFTG 215 (394)
T ss_pred CCCCCCHHHHHHHHH---HHHHCC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC--CCCCC
T ss_conf 654567999999999---998649--86999853315776884999999999999999999719997489878--99887
Q ss_pred H
Q ss_conf 6
Q gi|254780807|r 87 I 87 (168)
Q Consensus 87 i 87 (168)
-
T Consensus 216 ~ 216 (394)
T cd06831 216 S 216 (394)
T ss_pred C
T ss_conf 7
No 221
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=25.51 E-value=58 Score=14.81 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=10.4
Q ss_pred EHHHHHHHHHHHHHHHHHCCC
Q ss_conf 500003899999999973898
Q gi|254780807|r 104 IESKNKKASFLRYVVQKTAAR 124 (168)
Q Consensus 104 ves~~KK~~FL~~~~~~L~L~ 124 (168)
|=.-......||.-....|..
T Consensus 98 ILQP~~~~~~lR~~L~~~g~~ 118 (204)
T pfam04816 98 ILQPNINEEELREWLSQNSWQ 118 (204)
T ss_pred EEECCCCHHHHHHHHHHCCCE
T ss_conf 995797859999999988997
No 222
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=25.47 E-value=33 Score=16.25 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=37.2
Q ss_pred HCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHH------HHHC
Q ss_conf 00123443111114677-3356565227554663478750000389999999997389-80998042665------3312
Q gi|254780807|r 67 QLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQE------APQM 138 (168)
Q Consensus 67 ~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~------~~~~ 138 (168)
.++..+..|+|+|+..| .-=+....+-+ .+.|..||-.. +. .+ +++.+.+.+.+ +.+.
T Consensus 47 ~l~~~~~~VlDLGaAPG~WsQva~~~~~~---~g~VigVDl~~--------~~---pi~gv~~i~gDi~~~~~~~~i~~~ 112 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILP--------MD---PIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCC--------CC---CCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 64578998998068997578999997399---97399986530--------45---378967640344588999999998
Q ss_pred --CCCCCEEEECCC
Q ss_conf --479869999147
Q gi|254780807|r 139 --ITTCDVISARAL 150 (168)
Q Consensus 139 --~~~~d~v~sRA~ 150 (168)
..++|+|+|=+-
T Consensus 113 ~~~~~~DvVlSDmA 126 (209)
T PRK11188 113 VGDSKVDVVMSDMA 126 (209)
T ss_pred HCCCCCCEEECCCC
T ss_conf 58987308966666
No 223
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=25.46 E-value=30 Score=16.44 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHH--HH-----
Q ss_conf 43100123443111114677-335656522755466347875000038999999999738980-9980426--65-----
Q gi|254780807|r 64 RVFQLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRI--QE----- 134 (168)
Q Consensus 64 ~~~~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~--e~----- 134 (168)
+-++.++++..|+|+|+-.| --=+...+. =+.+.|..|| |+.+.- ..+.| ..+.+.. |+
T Consensus 25 ~~~kLik~G~~VlDLGAAPGGWsQva~~~~---G~kG~ViA~D--------l~~~k~-FP~~nv~fi~GDftdee~l~ki 92 (192)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQV---GGKGRVIAVD--------LQPMKG-FPIENVDFIRGDFTDEEVLNKI 92 (192)
T ss_pred CCCCCEECCCEEEECCCCCCCHHHHHHHHH---CCCCEEEEEE--------CCCCCC-CCCCCEEEEECCCCCHHHHHHH
T ss_conf 215611078867865789873877887760---6853389985--------455788-5646614754476787899999
Q ss_pred ---HHHCCCCCCEEEE---------------CCCCCHHHHHHHHHHHHCCC
Q ss_conf ---3312479869999---------------14799899999848852067
Q gi|254780807|r 135 ---APQMITTCDVISA---------------RALADLDTLLEYSFPWLYQK 167 (168)
Q Consensus 135 ---~~~~~~~~d~v~s---------------RA~a~l~~ll~~~~pllk~k 167 (168)
+++...++|+|+| ||+-=...-+++|...|+.+
T Consensus 93 ~~~~g~dekk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~ 143 (192)
T TIGR00438 93 LERVGDDEKKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPK 143 (192)
T ss_pred HHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 985789874377898526888789875434437999999999999986158
No 224
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=25.28 E-value=59 Score=14.78 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-------CHHHHHHHHHHHHHHHHH-CCCCCCCCEEECCCCCHHH
Q ss_conf 417999899999999999999846321304308-------999998986463564310-0123443111114677335
Q gi|254780807|r 17 NTYNVSRETLEKLEYFYFLFLKWSKKINLVSSS-------TVEDFWIRHVEDSLRVFQ-LHPYPSIWIDLGSGGGFPG 86 (168)
Q Consensus 17 ~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~-------~~~~~~~rHi~DSl~~~~-~~~~~~~ilDiGSGaGfPG 86 (168)
..|+++.++...+...++.+.. ....+++|.. ...+.|..-+..++.++. .....-.++|+| ||||+
T Consensus 141 skFG~~~~~~~~~l~~~~~~~~-~~~l~~~GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~idiG--GGf~~ 215 (379)
T cd06841 141 SRFGFDIEENGEALAALKKIQE-SKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLG--GGFPA 215 (379)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCCC
T ss_conf 3469998999999999998754-589729999988898758989999999999999999619996099807--87576
No 225
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.28 E-value=59 Score=14.78 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC---CCEEEE-CHHH-----HHH-HCCCC
Q ss_conf 4431111146773356565227554663478750000389999999997389---809980-4266-----533-12479
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA---RGKVFA-CRIQ-----EAP-QMITT 141 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L---~~~vi~-~r~e-----~~~-~~~~~ 141 (168)
.++++=++|-+|+-|.|-...| .=++.==..|.+.+..+++- ++..++ +.++ +.+ +....
T Consensus 133 ~G~II~isS~~~~~~~~~~~~Y----------~asKaal~~lt~~la~e~~~~~IrvN~I~PG~i~T~~~~~~~~~~~~~ 202 (246)
T PRK05653 133 YGRIVNISSVSGVAGNPGQTNY----------AAAKAGVIGLTKALALELASRGITVNAVAPGFIDTDMTRALPEEVKEA 202 (246)
T ss_pred CCCEEEECCHHHCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 9978998365546789996668----------999999999999999995043939999963888772311168999999
Q ss_pred -CCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf -8699991479989999984885206
Q gi|254780807|r 142 -CDVISARALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 142 -~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168)
..-+-.+-++.++.+.+.+.-|+-+
T Consensus 203 ~~~~~Pl~R~~~p~dia~~v~fL~S~ 228 (246)
T PRK05653 203 LLKQIPLGRLGTPEEVANAVAFLASD 228 (246)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 98479989983999999999999687
No 226
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=25.13 E-value=59 Score=14.77 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH-------HHHCC---CCEEEECHHHH---H
Q ss_conf 12344311111467733565652275546634787500003899999999-------97389---80998042665---3
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVV-------QKTAA---RGKVFACRIQE---A 135 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~-------~~L~L---~~~vi~~r~e~---~ 135 (168)
+..++.++|+|||-|==-+=.|...+-. .-.-+|..+--+.+-+... +..|+ +.+.+++..-+ .
T Consensus 40 l~~~dvF~DLGSGVGnvv~QaAl~tgc~---~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~~~~ 116 (205)
T pfam08123 40 LGPQDVFVDLGSGVGNCVLQAALEFGCK---LSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNERV 116 (205)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCC---EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH
T ss_conf 8976889985888329999999870965---3888886566899999999999999999588768738997777885889
Q ss_pred HHCCCCCCEEEECCCCCHHHH
Q ss_conf 312479869999147998999
Q gi|254780807|r 136 PQMITTCDVISARALADLDTL 156 (168)
Q Consensus 136 ~~~~~~~d~v~sRA~a~l~~l 156 (168)
.......|+|..--|+=-+.+
T Consensus 117 ~~~~~~a~VI~vNN~~F~~~L 137 (205)
T pfam08123 117 EEIIPEADVILVNNFAFDPEL 137 (205)
T ss_pred HHHHCCCCEEEEECCCCCHHH
T ss_conf 986347988999432469889
No 227
>KOG1710 consensus
Probab=24.96 E-value=60 Score=14.75 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-----------HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9632068885136666417999-----------899999999999999846321
Q gi|254780807|r 1 MKYCDSNSILRANYLLNTYNVS-----------RETLEKLEYFYFLFLKWSKKI 43 (168)
Q Consensus 1 ~~~~~~n~~~~~~~l~~~~~ls-----------~eq~~~l~~y~~ll~~~N~~~ 43 (168)
|++-|||+++--..-.-.+.++ ..-.+++..|+.++.+|...-
T Consensus 206 m~~~d~NEila~K~hy~~~~irc~~qfk~~nkeKsgEnk~~~~~K~ilk~~~~d 259 (396)
T KOG1710 206 MRCKDSNEILALKLHYILFSIRCTSQFKESNKEKSGENKSLQYAKLILKWQEGD 259 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 815008899999999888777678988776201480668999999997641147
No 228
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=23.11 E-value=42 Score=15.64 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCC-CCCCCCEEECCCCCHHHHH
Q ss_conf 646356431001-2344311111467733565
Q gi|254780807|r 58 HVEDSLRVFQLH-PYPSIWIDLGSGGGFPGII 88 (168)
Q Consensus 58 Hi~DSl~~~~~~-~~~~~ilDiGSGaGfPGi~ 88 (168)
|+-||+.-.+.. ..+-.++|+||-+|.-|.-
T Consensus 97 ~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~ 128 (300)
T COG1023 97 NYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE 128 (300)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHH
T ss_conf 25778999998876597178346777722553
No 229
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.08 E-value=65 Score=14.53 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=39.8
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC---CCEEEE-CHHHH-H---HHCCCCC
Q ss_conf 34431111146773356565227554663478750000389999999997389---809980-42665-3---3124798
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA---RGKVFA-CRIQE-A---PQMITTC 142 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L---~~~vi~-~r~e~-~---~~~~~~~ 142 (168)
..++|+-|+|.+|.-|.|-.-.| .=|+.==..|-+....++.- ++..++ +-+.. . ......+
T Consensus 133 ~~G~IinisS~ag~~~~~~~~~Y----------~aSK~al~~lt~~la~E~~~~gIrVn~V~PG~v~T~m~~~~~~~~~~ 202 (241)
T PRK07454 133 GGGLIINVSSHAARNAFPQWGAY----------CVSKAALAAFTKCLAEEERSHGIRVCTLTLGAVNTPLWDSETVQADF 202 (241)
T ss_pred CCCEEEEEECHHHCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99899998356544778997579----------99999999999999998384593899997388988988863333554
Q ss_pred CEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 69999147998999998488520
Q gi|254780807|r 143 DVISARALADLDTLLEYSFPWLY 165 (168)
Q Consensus 143 d~v~sRA~a~l~~ll~~~~pllk 165 (168)
+ .+++.+++.+.+...-++.
T Consensus 203 ~---~~~~l~PedVA~~v~flas 222 (241)
T PRK07454 203 D---RSAMLSPEQVAQTILYLAQ 222 (241)
T ss_pred C---CCCCCCHHHHHHHHHHHHC
T ss_conf 5---5689999999999999976
No 230
>KOG4782 consensus
Probab=21.17 E-value=48 Score=15.27 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=27.6
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1114677335656522755466347875000038999999999738980
Q gi|254780807|r 77 DLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG 125 (168)
Q Consensus 77 DiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~ 125 (168)
.+=||+|+-|++++|..- .++. -|.-+||.++-.+....+
T Consensus 59 N~is~a~i~alViaIY~Y-----TfYS----ikQErFLdEiddEaaAan 98 (108)
T KOG4782 59 NHISFAGIGALVIAIYGY-----TFYS----IKQERFLDEIDDEAAAAN 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHH-----EEEE----HHHHHHHHHHHHHHHHCC
T ss_conf 012367777899986432-----0010----039888999988988507
No 231
>PRK08328 hypothetical protein; Provisional
Probab=20.89 E-value=72 Score=14.27 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHH--------------------HHHHHHHHHHHHHHHCCCC--EEEE
Q ss_conf 44311111467733565652275546634787500--------------------0038999999999738980--9980
Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIES--------------------KNKKASFLRYVVQKTAARG--KVFA 129 (168)
Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves--------------------~~KK~~FL~~~~~~L~L~~--~vi~ 129 (168)
..+++=+|.||- |=+.+...--..-++++++|. ..+|+...++..++++-++ +.++
T Consensus 27 ~s~VlvvG~GGl--Gs~~~~~La~~GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~ 104 (230)
T PRK08328 27 KAKVAVVGVGGL--GSPVAYYLAAAGVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFV 104 (230)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHCCCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHH
T ss_conf 597899887878--999999999848986898748787515632554030877477103999999999759950575266
Q ss_pred CHH--HHHHHCCCCCCEEEECCCCCH
Q ss_conf 426--653312479869999147998
Q gi|254780807|r 130 CRI--QEAPQMITTCDVISARALADL 153 (168)
Q Consensus 130 ~r~--e~~~~~~~~~d~v~sRA~a~l 153 (168)
.++ ++..+....+|+|+. |.-+.
T Consensus 105 ~~i~~~n~~~ll~~~DlViD-~tDn~ 129 (230)
T PRK08328 105 GRLTEENIDEVLKGVDVIVD-CLDNF 129 (230)
T ss_pred HHHHHHHHHHHHCCCCEEEE-CCCCH
T ss_conf 44237779862005989999-88998
No 232
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=20.58 E-value=55 Score=14.94 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHCCCCCCCCEEEEEHHH
Q ss_conf 4677335656522755466347875000
Q gi|254780807|r 80 SGGGFPGIITSIQLSSIEGGLVNLIESK 107 (168)
Q Consensus 80 SGaGfPGi~laI~~p~~~~~~v~Lves~ 107 (168)
.|||.=|+.+|+.+... +..|+++|+.
T Consensus 8 vGaG~aGl~lA~~L~~~-G~~V~liE~~ 34 (387)
T COG0654 8 VGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred ECCCHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 99789999999999828-9968999077
No 233
>PRK06940 short chain dehydrogenase; Provisional
Probab=20.53 E-value=73 Score=14.22 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=8.9
Q ss_pred ECCCCCHHHHHHHHHHHH
Q ss_conf 914799899999848852
Q gi|254780807|r 147 ARALADLDTLLEYSFPWL 164 (168)
Q Consensus 147 sRA~a~l~~ll~~~~pll 164 (168)
.+-++.++.+.....=|+
T Consensus 231 ~gR~g~peeia~~v~FL~ 248 (277)
T PRK06940 231 TGRIGTPDDIAAAAEFLM 248 (277)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 899878999999999995
No 234
>pfam11590 DNAPolymera_Pol DNA polymerase catalytic subunit Pol. This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA.
Probab=20.51 E-value=31 Score=16.36 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=7.5
Q ss_pred CEEECCCCCHHH
Q ss_conf 111114677335
Q gi|254780807|r 75 WIDLGSGGGFPG 86 (168)
Q Consensus 75 ilDiGSGaGfPG 86 (168)
+--||+|+|+|-
T Consensus 12 F~~i~~gag~~~ 23 (41)
T pfam11590 12 FATIRSGAGLPV 23 (41)
T ss_pred HHHHCCCCCCCC
T ss_conf 777414789876
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.42 E-value=74 Score=14.21 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHH-HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC----
Q ss_conf 89999989864635643100123443111114677335656-5227554663478750000389999999997389----
Q gi|254780807|r 49 STVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIIT-SIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA---- 123 (168)
Q Consensus 49 ~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~l-aI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L---- 123 (168)
++...+..+|.-|= +..++.+..++++|||++-.--.| ..+........++-+|-+ ..+|+...+++..
T Consensus 57 R~E~~IL~~~~~eI---a~~i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS---~~~L~~s~~~l~~~~~~ 130 (319)
T TIGR03439 57 NDEIEILKKHSSDI---AASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS---RSELQRTLAELPLGNFS 130 (319)
T ss_pred HHHHHHHHHHHHHH---HHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECC---HHHHHHHHHHHHHCCCC
T ss_conf 78999999989999---9855899769974688724589999999854997428865176---99999999874240489
Q ss_pred --CCEEEECHHHH
Q ss_conf --80998042665
Q gi|254780807|r 124 --RGKVFACRIQE 134 (168)
Q Consensus 124 --~~~vi~~r~e~ 134 (168)
++..+++.-++
T Consensus 131 ~l~v~~i~gdy~~ 143 (319)
T TIGR03439 131 HVRCAGLLGTYDD 143 (319)
T ss_pred CCEEEEEEECHHH
T ss_conf 7558888753787
No 236
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.13 E-value=75 Score=14.17 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 000389999999997389809980426653312479869999
Q gi|254780807|r 106 SKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 106 s~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
|+..-+.-|+.-.++.|++.+|.+..+.+++. ..|+|++
T Consensus 13 SSaMgas~lrk~lk~~gl~i~V~n~aI~~lp~---dadlVVt 51 (87)
T cd05567 13 SSAMGASVLRKKLKKAGLEIPVTNSAIDELPS---DADLVVT 51 (87)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCC---CCCEEEE
T ss_conf 89999999999999849983699801654998---6438886
Done!