HHsearch alignment for GI: 254780807 and conserved domain: pfam05175

>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.36  E-value=1.8e-06  Score=58.22  Aligned_cols=92  Identities=17%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC-
Q ss_conf             3443111114677335656522755466347875000038999999999738980-99804266533124798699991-
Q gi|254780807|r   71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR-  148 (168)
Q Consensus        71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR-  148 (168)
T Consensus        31 ~~g~vLDlGcG~G~i~~~la~~~p~~~---v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~-~~~~fD~IvsNP  106 (170)
T pfam05175        31 LGGKVLDLGCGYGVLGAALAKRSPDLE---VTMVDINARALESARANLAANGLENGEVFWSDLYSAV-EPGKFDLIISNP  106 (170)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHCCCCE---EEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCEEEEEECC
T ss_conf             899499977648298999999789867---9851544999999999999809984899974466657-788660899897


Q ss_pred             ---CCC-----CHHHHHHHHHHHHCC
Q ss_conf             ---479-----989999984885206
Q gi|254780807|r  149 ---ALA-----DLDTLLEYSFPWLYQ  166 (168)
Q Consensus       149 ---A~a-----~l~~ll~~~~pllk~  166 (168)
T Consensus       107 P~h~g~~~~~~~~~~~i~~A~~~L~p  132 (170)
T pfam05175       107 PFHAGKATDYDVAQRFIAGAARHLKP  132 (170)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             72114203289999999999996164