HHsearch alignment for GI: 254780807 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.36 E-value=1.8e-06 Score=58.22 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC-
Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533124798699991-
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR- 148 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR- 148 (168)
T Consensus 31 ~~g~vLDlGcG~G~i~~~la~~~p~~~---v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~-~~~~fD~IvsNP 106 (170)
T pfam05175 31 LGGKVLDLGCGYGVLGAALAKRSPDLE---VTMVDINARALESARANLAANGLENGEVFWSDLYSAV-EPGKFDLIISNP 106 (170)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCE---EEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCEEEEEECC
T ss_conf 899499977648298999999789867---9851544999999999999809984899974466657-788660899897
Q ss_pred ---CCC-----CHHHHHHHHHHHHCC
Q ss_conf ---479-----989999984885206
Q gi|254780807|r 149 ---ALA-----DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 149 ---A~a-----~l~~ll~~~~pllk~ 166 (168)
T Consensus 107 P~h~g~~~~~~~~~~~i~~A~~~L~p 132 (170)
T pfam05175 107 PFHAGKATDYDVAQRFIAGAARHLKP 132 (170)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 72114203289999999999996164