>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.

Probab=92.36 E-value=0.67 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=49.2 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH Q ss_conf 443111114677335656522755466347875000038999999999738980-9980426653 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA 135 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~ 135 (168) T Consensus 198 ~~~vlDlYcG~Gtfsl~lA~~-----~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~ 257 (353) T pfam05958 198 KGDLLELYCGNGNFSLALAQN-----FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353) T ss_pred CCCEEEEECCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH T ss_conf 995899846888888999864-----787999962599999999989986998649997289999

HHsearch alignment for GI: 254780807 and conserved domain: pfam05958