HHsearch results for GI: 254780807 and protein with PDBid: 3m6w_A

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.66  E-value=0.14  Score=28.71  Aligned_cols=77  Identities=17%  Similarity=0.028  Sum_probs=59.8

Q ss_pred             CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH-HCCCCCCEEEECC
Q ss_conf             344311111467733565652275546634787500003899999999973898099804266533-1247986999914
Q gi|254780807|r   71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP-QMITTCDVISARA  149 (168)
Q Consensus        71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~-~~~~~~d~v~sRA  149 (168)
                      .+.+|+|+.++.|-=..-||=...+  ...++..|.+.+|+.-|..-.++++.++.+.+.....+. .....||.|..-|
T Consensus       101 ~g~~VLDlCAAPGGKt~~la~~l~~--~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~~~fD~ILvDa  178 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGG--KGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTT--CSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHC--CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECC
T ss_conf             9997988365876559999988535--83576224317888889888886188616872322433204666443798448