Query gi|254780807|ref|YP_003065220.1| glucose-inhibited division protein B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 168 No_of_seqs 118 out of 2055 Neff 6.0 Searched_HMMs 23785 Date Mon May 30 12:46:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780807.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xdz_A Methyltransferase GIDB; 100.0 0 0 317.1 15.4 156 9-167 6-167 (240) 2 1jsx_A Glucose-inhibited divis 100.0 0 0 311.7 12.3 152 11-167 6-158 (207) 3 3g89_A Ribosomal RNA small sub 100.0 0 0 306.1 14.9 158 6-167 14-177 (249) 4 3mgg_A Methyltransferase; NYSG 98.6 1.1E-07 4.7E-12 63.9 8.5 95 69-166 35-134 (276) 5 3e05_A Precorrin-6Y C5,15-meth 98.6 2.7E-07 1.1E-11 61.7 9.7 96 69-167 38-135 (204) 6 2o57_A Putative sarcosine dime 98.6 6.3E-07 2.6E-11 59.6 11.3 106 57-166 68-179 (297) 7 2gpy_A O-methyltransferase; st 98.6 2.4E-07 1E-11 62.0 8.6 94 70-166 53-152 (233) 8 3evz_A Methyltransferase; NYSG 98.5 2.4E-07 1E-11 62.0 7.5 80 65-147 49-129 (230) 9 2p8j_A S-adenosylmethionine-de 98.5 2.5E-07 1E-11 61.9 7.4 94 69-166 21-120 (209) 10 3gu3_A Methyltransferase; alph 98.5 4.3E-07 1.8E-11 60.6 8.0 95 69-166 20-118 (284) 11 3kkz_A Uncharacterized protein 98.5 4.5E-07 1.9E-11 60.4 7.6 100 63-166 38-142 (267) 12 3a27_A TYW2, uncharacterized p 98.4 7.4E-07 3.1E-11 59.2 7.9 98 65-166 113-211 (272) 13 3hm2_A Precorrin-6Y C5,15-meth 98.4 2.1E-06 8.8E-11 56.6 9.5 94 71-167 25-120 (178) 14 1xxl_A YCGJ protein; structura 98.4 1.4E-06 6E-11 57.5 8.4 104 58-166 5-116 (239) 15 2b3t_A Protein methyltransfera 98.4 1.9E-06 7.8E-11 56.9 9.0 120 19-148 45-183 (276) 16 1or8_A Protein arginine N-meth 98.4 2E-06 8.2E-11 56.7 9.0 92 70-166 56-156 (340) 17 1nv8_A HEMK protein; class I a 98.4 1.8E-06 7.4E-11 57.0 8.7 127 13-148 52-199 (284) 18 3b3f_A Histone-arginine methyl 98.4 2.3E-06 9.7E-11 56.3 9.1 90 71-166 46-143 (341) 19 3lpm_A Putative methyltransfer 98.3 1.6E-06 6.9E-11 57.2 7.9 86 58-147 33-125 (259) 20 1ve3_A Hypothetical protein PH 98.3 1.8E-06 7.7E-11 56.9 8.0 96 66-166 33-134 (227) 21 3dlc_A Putative S-adenosyl-L-m 98.3 1.6E-06 6.7E-11 57.2 7.7 92 71-166 43-140 (219) 22 1dus_A MJ0882; hypothetical pr 98.3 1.7E-06 7.2E-11 57.1 7.7 101 56-166 41-149 (194) 23 3dh0_A SAM dependent methyltra 98.3 1.9E-06 7.8E-11 56.9 7.7 95 69-166 35-135 (219) 24 1vl5_A Unknown conserved prote 98.3 2.7E-06 1.1E-10 55.9 8.5 92 70-166 36-132 (260) 25 3c3p_A Methyltransferase; NP_9 98.3 3.4E-06 1.4E-10 55.4 8.7 95 70-166 55-152 (210) 26 2fyt_A Protein arginine N-meth 98.3 7.1E-06 3E-10 53.5 9.8 91 71-166 64-163 (340) 27 1l3i_A Precorrin-6Y methyltran 98.3 6.3E-06 2.7E-10 53.8 9.4 92 70-166 32-126 (192) 28 2h00_A Methyltransferase 10 do 98.3 1.5E-06 6.2E-11 57.4 6.0 91 55-148 48-147 (254) 29 3gnl_A Uncharacterized protein 98.2 5.8E-06 2.4E-10 54.0 8.8 97 65-165 15-116 (244) 30 3fpf_A Mtnas, putative unchara 98.2 8.7E-06 3.7E-10 53.0 9.7 91 70-166 121-214 (298) 31 2pjd_A Ribosomal RNA small sub 98.2 2.4E-06 9.9E-11 56.3 6.6 73 71-148 196-268 (343) 32 2ozv_A Hypothetical protein AT 98.2 2.6E-06 1.1E-10 56.0 6.7 114 51-167 14-163 (260) 33 2qm3_A Predicted methyltransfe 98.2 8.5E-06 3.6E-10 53.1 9.2 78 71-152 172-252 (373) 34 3mti_A RRNA methylase; SAM-dep 98.2 8E-06 3.4E-10 53.2 9.0 80 65-149 16-97 (185) 35 3dmg_A Probable ribosomal RNA 98.2 1.4E-05 5.8E-10 51.8 10.0 106 56-166 216-332 (381) 36 1dl5_A Protein-L-isoaspartate 98.2 4.5E-06 1.9E-10 54.7 7.4 81 69-151 73-154 (317) 37 3kr9_A SAM-dependent methyltra 98.2 7.9E-06 3.3E-10 53.3 8.6 99 64-165 8-110 (225) 38 3bus_A REBM, methyltransferase 98.2 1.6E-05 6.8E-10 51.5 10.1 94 69-166 59-158 (273) 39 3m70_A Tellurite resistance pr 98.2 6.8E-06 2.9E-10 53.6 8.2 90 71-166 120-215 (286) 40 3f4k_A Putative methyltransfer 98.2 7.3E-06 3.1E-10 53.4 8.1 97 66-166 41-142 (257) 41 2yxd_A Probable cobalt-precorr 98.2 2.1E-05 8.7E-10 50.8 10.4 88 69-162 33-121 (183) 42 1y8c_A S-adenosylmethionine-de 98.2 2E-05 8.4E-10 50.9 10.2 124 26-166 3-134 (246) 43 1g6q_1 HnRNP arginine N-methyl 98.2 1.5E-05 6.3E-10 51.6 9.5 91 71-166 38-137 (328) 44 3dr5_A Putative O-methyltransf 98.2 1.6E-05 6.6E-10 51.5 9.6 95 70-166 55-155 (221) 45 3b3j_A Histone-arginine methyl 98.1 9.9E-06 4.2E-10 52.7 8.4 75 71-151 158-234 (480) 46 3l8d_A Methyltransferase; stru 98.1 6.4E-06 2.7E-10 53.8 6.8 93 66-166 48-145 (242) 47 2nxc_A L11 mtase, ribosomal pr 98.1 1.1E-05 4.5E-10 52.5 7.8 78 68-151 117-194 (254) 48 3grz_A L11 mtase, ribosomal pr 98.1 4.9E-06 2E-10 54.4 6.1 77 68-150 57-134 (205) 49 1sui_A Caffeoyl-COA O-methyltr 98.1 3.5E-05 1.5E-09 49.5 10.0 96 70-167 78-183 (247) 50 2i6g_A Putative methyltransfer 98.1 2.6E-05 1.1E-09 50.3 9.2 109 51-166 6-127 (199) 51 1jg1_A PIMT;, protein-L-isoasp 98.1 1.1E-05 4.5E-10 52.5 7.2 78 70-151 90-168 (235) 52 2esr_A Methyltransferase; stru 98.1 1.1E-05 4.8E-10 52.3 7.3 74 71-148 31-107 (177) 53 3fzg_A 16S rRNA methylase; met 98.0 8.4E-06 3.5E-10 53.1 6.4 81 65-150 43-124 (200) 54 2yqz_A Hypothetical protein TT 98.0 3.2E-05 1.3E-09 49.8 8.5 91 71-166 39-133 (263) 55 3g5l_A Putative S-adenosylmeth 98.0 2.6E-05 1.1E-09 50.2 8.1 89 71-166 44-137 (253) 56 1wy7_A Hypothetical protein PH 98.0 3E-05 1.3E-09 49.9 8.3 102 39-149 19-120 (207) 57 3lcv_B Sisomicin-gentamicin re 98.0 1.6E-05 6.5E-10 51.5 6.7 80 67-150 128-207 (281) 58 2ex4_A Adrenal gland protein A 98.0 2.3E-05 9.8E-10 50.5 7.5 93 70-166 78-177 (241) 59 1xtp_A LMAJ004091AAA; SGPP, st 98.0 1.7E-05 7.1E-10 51.3 6.7 89 71-166 93-189 (254) 60 3gdh_A Trimethylguanosine synt 98.0 3E-05 1.3E-09 49.9 7.9 74 70-149 77-152 (241) 61 2yxe_A Protein-L-isoaspartate 98.0 2.5E-05 1E-09 50.4 7.4 81 70-152 76-157 (215) 62 2avd_A Catechol-O-methyltransf 97.9 8.3E-05 3.5E-09 47.3 9.9 95 70-166 68-171 (229) 63 3dtn_A Putative methyltransfer 97.9 1.7E-05 7.3E-10 51.3 6.3 95 67-166 40-140 (234) 64 3c3y_A Pfomt, O-methyltransfer 97.9 5E-05 2.1E-09 48.6 8.5 95 70-166 69-173 (237) 65 2frn_A Hypothetical protein PH 97.9 3.5E-05 1.5E-09 49.5 7.6 96 66-166 120-217 (278) 66 3lec_A NADB-rossmann superfami 97.9 7E-05 3E-09 47.7 9.1 99 65-166 15-117 (230) 67 3g5t_A Trans-aconitate 3-methy 97.9 4.3E-05 1.8E-09 49.0 7.8 95 69-166 34-141 (299) 68 1wzn_A SAM-dependent methyltra 97.9 8.3E-05 3.5E-09 47.3 9.2 90 71-166 41-137 (252) 69 2avn_A Ubiquinone/menaquinone 97.9 3.1E-05 1.3E-09 49.8 6.9 91 66-166 49-144 (260) 70 2fca_A TRNA (guanine-N(7)-)-me 97.9 0.00012 5.1E-09 46.4 9.6 92 72-166 39-145 (213) 71 2hnk_A SAM-dependent O-methylt 97.8 9.6E-05 4E-09 47.0 8.6 95 70-166 59-173 (239) 72 3bkx_A SAM-dependent methyltra 97.8 0.00014 5.7E-09 46.1 9.4 95 69-166 41-151 (275) 73 1nkv_A Hypothetical protein YJ 97.8 4.7E-05 2E-09 48.8 6.9 92 70-166 35-132 (256) 74 1ws6_A Methyltransferase; stru 97.8 7.3E-05 3.1E-09 47.7 7.6 76 68-148 38-117 (171) 75 3jwg_A HEN1, methyltransferase 97.8 7.5E-05 3.2E-09 47.6 7.6 93 71-166 29-133 (219) 76 2pwy_A TRNA (adenine-N(1)-)-me 97.8 7.4E-05 3.1E-09 47.6 7.4 94 69-166 94-190 (258) 77 2p35_A Trans-aconitate 2-methy 97.8 8.1E-05 3.4E-09 47.4 7.5 89 70-166 32-124 (259) 78 3jwh_A HEN1; methyltransferase 97.8 0.00012 5.2E-09 46.3 8.4 93 71-166 29-133 (217) 79 3bkw_A MLL3908 protein, S-aden 97.8 5E-05 2.1E-09 48.6 6.3 89 71-166 43-136 (243) 80 3d2l_A SAM-dependent methyltra 97.8 0.00012 4.9E-09 46.5 8.1 92 68-166 30-129 (243) 81 2yvl_A TRMI protein, hypotheti 97.8 0.00012 5.1E-09 46.4 8.2 113 48-166 57-182 (248) 82 2pbf_A Protein-L-isoaspartate 97.7 0.00011 4.5E-09 46.7 7.7 85 68-152 77-173 (227) 83 2kw5_A SLR1183 protein; struct 97.7 0.00017 7E-09 45.6 8.6 91 71-166 29-123 (202) 84 2pxx_A Uncharacterized protein 97.7 4.7E-05 2E-09 48.7 5.6 80 66-151 37-117 (215) 85 1wxx_A TT1595, hypothetical pr 97.7 7E-05 2.9E-09 47.8 6.4 91 71-166 209-317 (382) 86 2gs9_A Hypothetical protein TT 97.7 0.00013 5.6E-09 46.2 7.6 101 53-166 20-124 (211) 87 2fk8_A Methoxy mycolic acid sy 97.7 0.0005 2.1E-08 42.8 10.5 92 69-167 88-187 (318) 88 1yb2_A Hypothetical protein TA 97.7 8.5E-05 3.6E-09 47.3 6.4 93 69-166 108-203 (275) 89 3iv6_A Putative Zn-dependent a 97.7 4.3E-05 1.8E-09 49.0 4.8 80 67-151 41-120 (261) 90 1o54_A SAM-dependent O-methylt 97.7 0.00016 6.8E-09 45.7 7.7 116 45-166 76-205 (277) 91 3eey_A Putative rRNA methylase 97.7 0.00014 5.9E-09 46.0 7.4 80 65-147 16-99 (197) 92 3duw_A OMT, O-methyltransferas 97.6 0.00048 2E-08 42.9 9.4 96 70-167 57-160 (223) 93 1i9g_A Hypothetical protein RV 97.6 0.00027 1.1E-08 44.4 8.0 92 70-165 98-194 (280) 94 3cbg_A O-methyltransferase; cy 97.6 0.00034 1.4E-08 43.8 8.5 95 70-166 71-174 (232) 95 1i1n_A Protein-L-isoaspartate 97.6 0.00029 1.2E-08 44.2 7.7 81 68-151 74-161 (226) 96 1yzh_A TRNA (guanine-N(7)-)-me 97.5 0.00057 2.4E-08 42.5 9.1 92 72-166 42-148 (214) 97 1vlm_A SAM-dependent methyltra 97.5 0.0004 1.7E-08 43.4 8.4 82 70-166 46-131 (219) 98 1zx0_A Guanidinoacetate N-meth 97.5 0.00026 1.1E-08 44.5 7.3 93 70-166 59-162 (236) 99 3ege_A Putative methyltransfer 97.5 0.00029 1.2E-08 44.2 7.6 98 55-166 22-123 (261) 100 3hem_A Cyclopropane-fatty-acyl 97.5 0.00064 2.7E-08 42.2 9.3 92 69-167 70-176 (302) 101 3ocj_A Putative exported prote 97.5 9.1E-05 3.8E-09 47.1 5.0 95 68-166 115-219 (305) 102 3mb5_A SAM-dependent methyltra 97.5 0.00041 1.7E-08 43.3 8.0 93 69-166 91-186 (255) 103 3frh_A 16S rRNA methylase; met 97.5 0.00023 9.6E-09 44.8 6.7 76 70-152 104-179 (253) 104 1nt2_A Fibrillarin-like PRE-rR 97.4 0.00057 2.4E-08 42.5 8.1 93 69-166 55-153 (210) 105 2p7i_A Hypothetical protein; p 97.4 0.00044 1.8E-08 43.2 7.5 87 71-166 42-133 (250) 106 1ne2_A Hypothetical protein TA 97.4 0.00034 1.4E-08 43.8 6.8 91 44-147 26-116 (200) 107 1fbn_A MJ fibrillarin homologu 97.4 0.00039 1.6E-08 43.5 7.0 94 69-166 72-170 (230) 108 2aot_A HMT, histamine N-methyl 97.4 0.001 4.2E-08 41.1 9.1 95 71-166 52-164 (292) 109 1vbf_A 231AA long hypothetical 97.4 0.00029 1.2E-08 44.2 6.3 77 69-151 68-144 (231) 110 2as0_A Hypothetical protein PH 97.4 0.00043 1.8E-08 43.2 7.2 96 67-166 213-327 (396) 111 3id6_C Fibrillarin-like rRNA/T 97.4 0.00069 2.9E-08 42.0 7.9 94 69-166 74-173 (232) 112 3hnr_A Probable methyltransfer 97.4 0.00052 2.2E-08 42.8 7.2 87 71-166 45-137 (220) 113 3lbf_A Protein-L-isoaspartate 97.4 0.00068 2.8E-08 42.1 7.6 77 70-151 76-153 (210) 114 1r18_A Protein-L-isoaspartate( 97.4 0.00034 1.4E-08 43.8 6.0 85 68-152 81-174 (227) 115 3lcc_A Putative methyl chlorid 97.4 0.00023 9.7E-09 44.8 5.1 75 71-151 66-142 (235) 116 2fhp_A Methylase, putative; al 97.3 0.00076 3.2E-08 41.8 7.7 86 70-159 43-137 (187) 117 3g07_A 7SK snRNA methylphospha 97.3 0.0001 4.3E-09 46.8 3.2 54 69-125 44-97 (292) 118 3ccf_A Cyclopropane-fatty-acyl 97.3 0.00036 1.5E-08 43.6 5.9 86 71-166 57-146 (279) 119 3h2b_A SAM-dependent methyltra 97.3 0.0012 5.2E-08 40.6 8.5 87 71-166 41-133 (203) 120 3m33_A Uncharacterized protein 97.3 0.00021 8.9E-09 45.0 4.6 120 20-158 5-127 (226) 121 2fpo_A Methylase YHHF; structu 97.3 0.00057 2.4E-08 42.5 6.7 86 71-160 54-144 (202) 122 3dli_A Methyltransferase; PSI- 97.3 0.0015 6.3E-08 40.1 8.7 90 65-166 35-132 (240) 123 3hvi_A Catechol O-methyltransf 97.3 0.0019 8.1E-08 39.4 9.1 95 70-166 57-162 (221) 124 3e23_A Uncharacterized protein 97.3 0.00084 3.5E-08 41.5 7.1 89 67-166 39-133 (211) 125 1im8_A YECO; methyltransferase 97.2 0.0012 5.1E-08 40.6 7.9 97 67-166 54-158 (244) 126 1kpg_A CFA synthase;, cyclopro 97.2 0.0013 5.5E-08 40.4 8.0 110 49-166 43-160 (287) 127 2yx1_A Hypothetical protein MJ 97.2 0.0011 4.4E-08 41.0 7.5 89 69-166 193-283 (336) 128 3c0k_A UPF0064 protein YCCW; P 97.2 0.0017 7.3E-08 39.7 8.5 92 71-166 220-331 (396) 129 1ri5_A MRNA capping enzyme; me 97.2 0.0012 5.1E-08 40.6 7.7 101 62-166 55-166 (298) 130 1g8a_A Fibrillarin-like PRE-rR 97.2 0.00098 4.1E-08 41.1 6.8 94 69-166 71-170 (227) 131 3i9f_A Putative type 11 methyl 97.1 0.00092 3.9E-08 41.3 6.2 84 71-166 17-104 (170) 132 3bzb_A Uncharacterized protein 97.1 0.0014 6.1E-08 40.2 7.2 110 52-165 53-191 (281) 133 1xva_A Glycine N-methyltransfe 97.1 0.00054 2.3E-08 42.6 4.9 102 56-166 45-166 (292) 134 3g2m_A PCZA361.24; SAM-depende 97.1 0.00087 3.7E-08 41.4 5.6 74 69-148 80-157 (299) 135 3ou2_A SAM-dependent methyltra 97.1 0.0014 5.9E-08 40.2 6.6 88 69-166 44-138 (218) 136 2ipx_A RRNA 2'-O-methyltransfe 97.0 0.0033 1.4E-07 38.1 8.4 93 69-166 75-174 (233) 137 1p91_A Ribosomal RNA large sub 97.0 0.0019 8E-08 39.5 7.0 73 70-149 84-156 (269) 138 3e8s_A Putative SAM dependent 97.0 0.0003 1.2E-08 44.1 2.8 88 70-166 51-144 (227) 139 3mcz_A O-methyltransferase; ad 97.0 0.0045 1.9E-07 37.3 8.7 76 71-150 179-257 (352) 140 3bxo_A N,N-dimethyltransferase 97.0 0.0015 6.5E-08 40.0 6.2 90 67-166 36-133 (239) 141 3cc8_A Putative methyltransfer 97.0 0.0014 5.9E-08 40.2 6.0 87 70-166 31-122 (230) 142 3cgg_A SAM-dependent methyltra 96.9 0.0018 7.5E-08 39.6 6.4 91 67-166 42-139 (195) 143 2b78_A Hypothetical protein SM 96.7 0.0064 2.7E-07 36.4 7.5 94 69-166 210-323 (385) 144 2r3s_A Uncharacterized protein 96.7 0.0044 1.9E-07 37.3 6.6 75 71-150 165-241 (335) 145 1x19_A CRTF-related protein; m 96.7 0.011 4.8E-07 35.0 8.6 74 71-150 190-265 (359) 146 2vdv_E TRNA (guanine-N(7)-)-me 96.6 0.003 1.3E-07 38.3 5.4 73 72-147 50-134 (246) 147 2ip2_A Probable phenazine-spec 96.6 0.0025 1E-07 38.8 4.7 90 71-166 167-264 (334) 148 2igt_A SAM dependent methyltra 96.5 0.014 5.7E-07 34.5 8.3 93 70-167 152-265 (332) 149 3i53_A O-methyltransferase; CO 96.5 0.018 7.4E-07 33.9 8.7 90 71-166 169-266 (332) 150 3dp7_A SAM-dependent methyltra 96.5 0.0038 1.6E-07 37.7 5.3 93 70-166 178-279 (363) 151 1nw3_A Histone methyltransfera 96.5 0.013 5.4E-07 34.7 7.9 86 70-158 154-251 (416) 152 3ckk_A TRNA (guanine-N(7)-)-me 96.4 0.0059 2.5E-07 36.6 6.0 75 71-148 46-130 (235) 153 1qzz_A RDMB, aclacinomycin-10- 96.4 0.005 2.1E-07 37.0 5.5 75 71-151 182-258 (374) 154 2f8l_A Hypothetical protein LM 96.4 0.052 2.2E-06 31.2 10.5 76 70-148 129-208 (344) 155 2zfu_A Nucleomethylin, cerebra 96.3 0.0053 2.2E-07 36.9 5.3 77 68-166 64-143 (215) 156 3dxy_A TRNA (guanine-N(7)-)-me 96.3 0.0085 3.6E-07 35.7 6.3 81 71-154 34-118 (218) 157 3bt7_A TRNA (uracil-5-)-methyl 96.2 0.018 7.5E-07 33.9 7.3 77 71-152 213-309 (369) 158 2b25_A Hypothetical protein; s 96.1 0.018 7.5E-07 33.9 6.8 101 61-165 93-210 (336) 159 1u2z_A Histone-lysine N-methyl 96.0 0.021 8.8E-07 33.4 7.1 85 70-157 241-339 (433) 160 1uwv_A 23S rRNA (uracil-5-)-me 96.0 0.051 2.1E-06 31.2 9.0 72 71-147 286-362 (433) 161 3ggd_A SAM-dependent methyltra 96.0 0.014 5.8E-07 34.5 6.1 91 68-166 53-155 (245) 162 3ofk_A Nodulation protein S; N 96.0 0.0094 3.9E-07 35.5 5.0 87 71-166 51-146 (216) 163 2a14_A Indolethylamine N-methy 95.9 0.014 5.7E-07 34.6 5.6 51 70-124 54-104 (263) 164 2i62_A Nicotinamide N-methyltr 95.8 0.0098 4.1E-07 35.4 4.4 68 53-124 36-105 (265) 165 2b9e_A NOL1/NOP2/SUN domain fa 95.7 0.032 1.4E-06 32.4 7.0 77 71-149 102-182 (309) 166 2dul_A N(2),N(2)-dimethylguano 95.7 0.083 3.5E-06 30.0 8.9 93 71-166 47-156 (378) 167 3gjy_A Spermidine synthase; AP 95.7 0.036 1.5E-06 32.1 7.0 92 55-153 70-171 (317) 168 3gwz_A MMCR; methyltransferase 95.7 0.045 1.9E-06 31.5 7.5 74 71-150 202-277 (369) 169 3ll7_A Putative methyltransfer 95.6 0.042 1.8E-06 31.7 7.3 75 68-147 90-169 (410) 170 2ift_A Putative methylase HI07 95.5 0.054 2.3E-06 31.1 7.4 85 56-147 41-131 (201) 171 3p2e_A 16S rRNA methylase; met 95.4 0.047 2E-06 31.4 7.0 65 72-139 25-94 (225) 172 1tw3_A COMT, carminomycin 4-O- 95.1 0.066 2.8E-06 30.6 6.9 75 71-151 183-259 (360) 173 3gru_A Dimethyladenosine trans 95.0 0.12 4.9E-06 29.1 7.9 72 70-147 49-120 (295) 174 1pjz_A Thiopurine S-methyltran 94.8 0.024 1E-06 33.1 3.9 91 70-165 21-131 (203) 175 3m6w_A RRNA methylase; rRNA me 94.7 0.14 5.8E-06 28.7 7.6 77 71-149 101-178 (464) 176 1ixk_A Methyltransferase; open 94.6 0.18 7.6E-06 28.0 8.0 77 71-149 118-195 (315) 177 3bgv_A MRNA CAP guanine-N7 met 94.3 0.083 3.5E-06 30.0 5.7 92 70-165 33-146 (313) 178 2jjq_A Uncharacterized RNA met 94.2 0.14 5.8E-06 28.7 6.7 74 71-152 290-367 (425) 179 1mjf_A Spermidine synthase; sp 94.2 0.28 1.2E-05 26.9 8.2 98 52-155 58-166 (281) 180 2h1r_A Dimethyladenosine trans 93.9 0.19 8.1E-06 27.9 6.9 71 70-147 41-112 (299) 181 1sqg_A SUN protein, FMU protei 93.8 0.15 6.3E-06 28.5 6.3 76 71-149 246-323 (429) 182 2frx_A Hypothetical protein YE 93.3 0.4 1.7E-05 26.1 7.8 77 71-149 117-195 (479) 183 3ndi_A Methyltransferase; S-ad 93.2 0.13 5.6E-06 28.8 5.2 104 54-166 87-200 (416) 184 3ajd_A Putative methyltransfer 93.1 0.4 1.7E-05 26.0 7.5 77 71-149 83-164 (274) 185 1uir_A Polyamine aminopropyltr 93.0 0.29 1.2E-05 26.8 6.7 81 68-152 74-162 (314) 186 3m4x_A NOL1/NOP2/SUN family pr 92.7 0.42 1.8E-05 26.0 7.1 77 71-149 105-183 (456) 187 2yui_A Anamorsin; cytokine-ind 92.4 0.079 3.3E-06 30.1 3.1 85 71-166 4-96 (182) 188 2yxl_A PH0851 protein, 450AA l 92.4 0.41 1.7E-05 26.0 6.8 77 71-149 259-338 (450) 189 2r6z_A UPF0341 protein in RSP 92.3 0.41 1.7E-05 26.0 6.7 75 71-150 83-170 (258) 190 1fp2_A Isoflavone O-methytrans 92.2 0.18 7.6E-06 28.0 4.8 67 71-151 188-256 (352) 191 2g72_A Phenylethanolamine N-me 92.1 0.25 1E-05 27.3 5.3 59 54-116 52-112 (289) 192 1qam_A ERMC' methyltransferase 91.8 0.57 2.4E-05 25.2 7.0 60 70-136 29-89 (244) 193 2gb4_A Thiopurine S-methyltran 91.8 0.58 2.4E-05 25.1 6.9 75 69-151 66-162 (252) 194 3adn_A Spermidine synthase; am 91.2 0.6 2.5E-05 25.1 6.5 82 68-153 80-169 (294) 195 2pt6_A Spermidine synthase; tr 90.8 0.68 2.9E-05 24.7 6.5 82 68-153 113-201 (321) 196 1fp1_D Isoliquiritigenin 2'-O- 90.7 0.28 1.2E-05 26.9 4.5 67 70-150 208-276 (372) 197 2oyr_A UPF0341 protein YHIQ; a 90.3 0.53 2.2E-05 25.4 5.6 70 73-147 90-170 (258) 198 1zq9_A Probable dimethyladenos 90.2 0.79 3.3E-05 24.4 6.4 61 70-135 27-89 (285) 199 3fut_A Dimethyladenosine trans 89.9 0.73 3.1E-05 24.5 6.1 52 72-130 47-98 (271) 200 2i7c_A Spermidine synthase; tr 89.7 1.1 4.5E-05 23.6 7.8 82 68-153 75-163 (283) 201 2vdw_A Vaccinia virus capping 89.6 0.3 1.3E-05 26.8 3.9 75 71-149 48-137 (302) 202 2b2c_A Spermidine synthase; be 89.1 1.2 5E-05 23.3 6.9 82 68-153 105-193 (314) 203 1iy9_A Spermidine synthase; ro 88.1 1.4 5.9E-05 22.9 7.0 82 68-153 72-160 (275) 204 2o07_A Spermidine synthase; st 88.1 1.3 5.6E-05 23.0 6.3 98 51-154 77-181 (304) 205 1kyz_A COMT, caffeic acid 3-O- 87.0 0.38 1.6E-05 26.2 3.0 68 70-151 199-268 (365) 206 2qfm_A Spermine synthase; sper 85.6 1.9 8.1E-05 22.1 6.8 93 53-152 173-278 (364) 207 1vjt_A Alpha-glucosidase; TM07 85.6 1.9 8.2E-05 22.1 6.9 71 74-148 14-95 (483) 208 1qyr_A KSGA, high level kasuga 85.2 0.82 3.4E-05 24.3 4.0 65 58-134 12-78 (252) 209 3lst_A CALO1 methyltransferase 84.8 0.45 1.9E-05 25.7 2.5 87 70-165 183-277 (348) 210 1zg3_A Isoflavanone 4'-O-methy 84.8 1.3 5.4E-05 23.1 4.8 67 71-151 193-261 (358) 211 1u8x_X Maltose-6'-phosphate gl 83.5 2.4 0.0001 21.5 7.9 74 72-149 28-110 (472) 212 1inl_A Spermidine synthase; be 83.1 2.5 0.00011 21.5 7.3 82 68-153 87-175 (296) 213 1yub_A Ermam, rRNA methyltrans 78.9 0.14 5.8E-06 28.7 -1.9 59 70-136 28-88 (245) 214 3htx_A HEN1; HEN1, small RNA m 76.4 4.2 0.00018 20.2 6.3 75 71-150 721-805 (950) 215 1up7_A 6-phospho-beta-glucosid 76.2 4.2 0.00018 20.1 7.0 72 75-150 5-82 (417) 216 3jyo_A Quinate/shikimate dehyd 75.4 4.4 0.00019 20.0 5.1 70 45-120 104-173 (283) 217 1i4w_A Mitochondrial replicati 73.6 4.9 0.00021 19.7 5.8 73 56-133 41-115 (353) 218 2cmg_A Spermidine synthase; tr 72.7 0.41 1.7E-05 26.0 -0.8 81 68-154 69-152 (262) 219 2qe6_A Uncharacterized protein 72.1 2.5 0.0001 21.5 3.0 74 73-150 79-166 (274) 220 1obb_A Maltase, alpha-glucosid 71.4 5.6 0.00023 19.4 7.3 55 74-128 5-66 (480) 221 2ih2_A Modification methylase 70.7 1.9 8E-05 22.1 2.2 67 71-148 39-105 (421) 222 1xj5_A Spermidine synthase 1; 67.2 6.9 0.00029 18.9 8.8 82 68-153 117-206 (334) 223 3ftd_A Dimethyladenosine trans 63.9 8 0.00034 18.5 4.4 58 70-135 30-88 (249) 224 3iyl_W VP1; non-enveloped viru 59.5 4.3 0.00018 20.1 2.3 64 71-147 827-895 (1299) 225 3btn_A Antizyme inhibitor 1; T 57.4 10 0.00043 17.9 3.9 64 16-86 167-240 (448) 226 2py6_A Methyltransferase FKBM; 56.7 11 0.00045 17.8 5.3 52 71-123 226-277 (409) 227 1s6y_A 6-phospho-beta-glucosid 55.7 11 0.00047 17.7 7.4 75 73-151 8-93 (450) 228 1ej6_A Lambda2; icosahedral, n 54.0 7.6 0.00032 18.7 2.8 64 71-147 821-888 (1289) 229 1d5t_A Guanine nucleotide diss 50.3 4.5 0.00019 20.0 1.1 41 21-61 134-180 (433) 230 2bcg_G Secretory pathway GDP d 49.5 4.8 0.0002 19.8 1.2 21 21-41 142-162 (453) 231 2bi7_A UDP-galactopyranose mut 45.5 7.2 0.0003 18.8 1.6 25 139-165 224-248 (384) 232 1dcf_A ETR1 protein; beta-alph 43.6 18 0.00074 16.6 6.5 27 140-167 104-130 (136) 233 3dou_A Ribosomal RNA large sub 42.3 7.3 0.00031 18.8 1.2 72 66-153 20-103 (191) 234 3h7a_A Short chain dehydrogena 41.7 19 0.00079 16.4 4.0 134 19-165 63-228 (252) 235 1v0j_A UDP-galactopyranose mut 39.4 7.7 0.00033 18.6 0.9 21 138-160 234-254 (399) 236 3lkd_A Type I restriction-modi 39.2 21 0.00086 16.2 6.2 76 70-147 220-303 (542) 237 3lad_A Dihydrolipoamide dehydr 38.7 11 0.00046 17.8 1.6 49 72-123 180-236 (476) 238 3hdq_A UDP-galactopyranose mut 38.2 9 0.00038 18.2 1.1 38 124-164 234-272 (397) 239 1i8t_A UDP-galactopyranose mut 38.1 11 0.00048 17.7 1.6 27 37-63 117-143 (367) 240 3bwc_A Spermidine synthase; SA 36.4 23 0.00096 15.9 7.2 83 68-154 92-182 (304) 241 1ej0_A FTSJ; methyltransferase 33.3 12 0.00052 17.4 1.2 72 66-151 17-98 (180) 242 2nyu_A Putative ribosomal RNA 32.7 13 0.00055 17.3 1.2 17 67-83 18-34 (196) 243 2p41_A Type II methyltransfera 31.6 13 0.00055 17.3 1.1 91 68-166 79-183 (305) 244 3opn_A Putative hemolysin; str 31.2 20 0.00084 16.2 2.0 93 64-167 30-130 (232) 245 2oo0_A ODC, ornithine decarbox 29.8 30 0.0012 15.3 3.7 63 17-86 178-250 (471) 246 3evf_A RNA-directed RNA polyme 28.5 16 0.00066 16.9 1.0 92 68-166 71-175 (277) 247 2kyg_C Protein CBFA2T1; protei 27.9 13 0.00054 17.4 0.5 10 75-84 2-11 (38) 248 2okc_A Type I restriction enzy 27.8 32 0.0013 15.1 3.9 74 71-147 171-259 (445) 249 3ic5_A Putative saccharopine d 27.6 32 0.0014 15.0 4.6 71 73-149 6-77 (118) 250 1nvt_A Shikimate 5'-dehydrogen 27.6 32 0.0014 15.0 4.5 67 45-119 105-171 (287) 251 3eld_A Methyltransferase; flav 27.3 17 0.00071 16.6 1.0 13 71-83 81-93 (300) 252 3giw_A Protein of unknown func 26.9 18 0.00076 16.5 1.1 58 73-133 80-141 (277) 253 3fef_A Putative glucosidase LP 26.2 34 0.0014 14.9 6.4 73 73-149 6-83 (450) 254 3lkz_A Non-structural protein 25.0 20 0.00084 16.3 1.0 15 69-83 92-106 (321) 255 2plw_A Ribosomal RNA methyltra 24.9 20 0.00084 16.2 1.0 17 67-83 18-34 (201) 256 2wa2_A Non-structural protein 23.5 22 0.00093 16.0 1.0 92 70-166 81-183 (276) 257 2b9w_A Putative aminooxidase; 23.4 23 0.00099 15.8 1.2 16 141-158 246-261 (424) 258 2oxt_A Nucleoside-2'-O-methylt 23.1 23 0.00097 15.9 1.1 88 69-165 72-174 (265) 259 1rp0_A ARA6, thiazole biosynth 22.9 27 0.0011 15.5 1.4 32 75-108 42-73 (284) 260 3gmb_A 2-methyl-3-hydroxypyrid 22.9 27 0.0011 15.5 1.4 35 71-108 46-80 (415) 261 2zzc_A Thioredoxin reductase 1 22.4 41 0.0017 14.5 2.5 48 57-107 189-236 (513) 262 3nrn_A Uncharacterized protein 22.2 27 0.0012 15.4 1.3 17 141-159 231-247 (421) 263 3gcz_A Polyprotein; flavivirus 22.0 25 0.001 15.7 1.0 89 69-166 88-191 (282) 264 2jah_A Clavulanic acid dehydro 21.4 43 0.0018 14.3 6.5 44 70-123 132-175 (247) 265 3grp_A 3-oxoacyl-(acyl carrier 21.3 43 0.0018 14.3 4.0 44 71-124 151-194 (266) 266 3o8q_A Shikimate 5-dehydrogena 21.1 43 0.0018 14.3 6.9 70 45-120 103-172 (281) 267 2dam_A ETEA protein; KIAA0887, 20.3 45 0.0019 14.2 3.3 35 18-62 11-48 (67) 268 3ka7_A Oxidoreductase; structu 20.1 31 0.0013 15.1 1.3 10 140-149 239-248 (425) No 1 >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 Probab=100.00 E-value=0 Score=317.09 Aligned_cols=156 Identities=24% Similarity=0.433 Sum_probs=143.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCEEECCCCCHHH Q ss_conf 85136666417999899999999999999846321304308999998986463564310012--3443111114677335 Q gi|254780807|r 9 ILRANYLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHP--YPSIWIDLGSGGGFPG 86 (168) Q Consensus 9 ~~~~~~l~~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~--~~~~ilDiGSGaGfPG 86 (168) -+...+-..++.+|++|+++|..|+++|.+||+++||||+++.+++|.+||+||++++.+++ ...+++|||||||||| T Consensus 6 ~l~~~l~~~g~~~s~~~~~~l~~y~~lL~~~N~~~NLt~~~~~~~i~~~Hi~DSl~~~~~i~~~~~~~ilDiGSGaGfPG 85 (240) T 1xdz_A 6 EFTSGLAEKGISLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPS 85 (240) T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH T ss_conf 99999998599999999999999999999847847788639989999988997799998754356886987259998278 Q ss_pred HHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH---HCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 656522755466347875000038999999999738980-99804266533---12479869999147998999998488 Q gi|254780807|r 87 IITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP---QMITTCDVISARALADLDTLLEYSFP 162 (168) Q Consensus 87 i~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~---~~~~~~d~v~sRA~a~l~~ll~~~~p 162 (168) |||||++|+.+ |||+||++||++||++++.+|+|+| +++++|+|+.. +++.+||+||||||++++.+++++.| T Consensus 86 i~LaI~~p~~~---v~Lves~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~~~~fD~v~sRAva~l~~ll~~~~~ 162 (240) T 1xdz_A 86 LPIKICFPHLH---VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLSELCLP 162 (240) T ss_dssp HHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECCSCHHHHHHHHGG T ss_pred HHHHHHCCCCC---CEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHH T ss_conf 99998678754---188755687789999999983888737873046550322123566656986100576889999998 Q ss_pred HHCCC Q ss_conf 52067 Q gi|254780807|r 163 WLYQK 167 (168) Q Consensus 163 llk~k 167 (168) ++++. T Consensus 163 ~lk~~ 167 (240) T 1xdz_A 163 LVKKN 167 (240) T ss_dssp GEEEE T ss_pred HCCCC T ss_conf 62789 No 2 >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Probab=100.00 E-value=0 Score=311.72 Aligned_cols=152 Identities=24% Similarity=0.373 Sum_probs=139.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHH Q ss_conf 13666641799989999999999999984632130430899999898646356431001234431111146773356565 Q gi|254780807|r 11 RANYLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITS 90 (168) Q Consensus 11 ~~~~l~~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~la 90 (168) ...+-..++.+|++|.++|..|+++|.+||+++||||+++.+++|.|||+||++++++++ +.+++|+|||||||||||| T Consensus 6 ~~~l~~~g~~ls~~q~~~l~~y~~~l~~~N~~~NLt~~~~~~~~~~~Hi~DSl~~~~~~~-~~~ilDiGsGaG~PGi~la 84 (207) T 1jsx_A 6 SLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQ-GERFIDVGTGPGLPGIPLS 84 (207) T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHGGGCC-SSEEEEETCTTTTTHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCHHHHHH T ss_conf 999998399999999999999999999967955558779989999999999998876423-8879861699861547898 Q ss_pred HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 22755466347875000038999999999738980-998042665331247986999914799899999848852067 Q gi|254780807|r 91 IQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPWLYQK 167 (168) Q Consensus 91 I~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~k 167 (168) |++|+.+ ++|+||++||++||++++++|+|+| +++++|+|+... ..+||+||||||++++.+++|+.|++++. T Consensus 85 I~~p~~~---~~Lve~~~Kk~~fL~~~~~~L~L~nv~v~~~R~e~~~~-~~~fD~v~sRAva~~~~ll~~~~~llk~~ 158 (207) T 1jsx_A 85 IVRPEAH---FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAFASLNDMVSWCHHLPGEQ 158 (207) T ss_dssp HHCTTSE---EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCSSSHHHHHHHHTTSEEEE T ss_pred HHCCCCE---EEEEECHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHCCCC T ss_conf 7488508---99970658899999999997399873045213453144-43232555643358999999999854899 No 3 >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Probab=100.00 E-value=0 Score=306.07 Aligned_cols=158 Identities=26% Similarity=0.364 Sum_probs=141.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCC--CCCCCEEECCCCC Q ss_conf 68885136666417999899999999999999846321304308999998986463564310012--3443111114677 Q gi|254780807|r 6 SNSILRANYLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHP--YPSIWIDLGSGGG 83 (168) Q Consensus 6 ~n~~~~~~~l~~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~--~~~~ilDiGSGaG 83 (168) ..+++.+..-..++.+++ |+++|..|+++|.+||+++||||+++.+++|.|||+||+++.++.. .+.+++||||||| T Consensus 14 ~~~~l~~~~~~lg~~~~~-q~~~l~~y~~lL~~wN~~~NLt~~~~~~~~~~rHilDSl~i~~~~~~~~~~~vlDiGSGaG 92 (249) T 3g89_A 14 GRALLLEGGKALGLDLKP-HLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAG 92 (249) T ss_dssp HHHHHHHHHHHHTCCCGG-GHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTT T ss_pred HHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC T ss_conf 999999999983998389-9999999999999855553220458989999999999998753146778978984269999 Q ss_pred HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH---HCCCCCCEEEECCCCCHHHHHHH Q ss_conf 335656522755466347875000038999999999738980-99804266533---12479869999147998999998 Q gi|254780807|r 84 FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP---QMITTCDVISARALADLDTLLEY 159 (168) Q Consensus 84 fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~---~~~~~~d~v~sRA~a~l~~ll~~ 159 (168) ||||||||++|+.+ ||||||++||++||++++++|+|+| +|+++|+|++. .+...||+||||||++++.++++ T Consensus 93 ~PGipLAI~~p~~~---v~LvEs~~KK~~FL~~v~~~LgL~Nv~vi~~R~E~~~~~~~~~~~fD~v~aRAva~l~~ll~~ 169 (249) T 3g89_A 93 FPGLPLKIVRPELE---LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSEL 169 (249) T ss_dssp TTHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESSCCHHHHHHH T ss_pred CCEEEEEEECCCCE---EEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHH T ss_conf 64057878369832---999808278999999999982999845887787870433123555005765552549999998 Q ss_pred HHHHHCCC Q ss_conf 48852067 Q gi|254780807|r 160 SFPWLYQK 167 (168) Q Consensus 160 ~~pllk~k 167 (168) +.|++++. T Consensus 170 ~~~~lk~~ 177 (249) T 3g89_A 170 LLPFLEVG 177 (249) T ss_dssp HGGGEEEE T ss_pred HHHHCCCC T ss_conf 64431679 No 4 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Probab=98.65 E-value=1.1e-07 Score=63.92 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=77.6 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEE Q ss_conf 12344311111467733565652275546634787500003899999999973898-09980426653312479869999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~s 147 (168) ++.+.+|+|||+|.|.....++=.+|.. +|+.+|.+..-....+....+.+.+ .++..+.+++++-..++||+|+| T Consensus 35 ~~pg~rVLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 111 (276) T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276) T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCHHHCCCCCCCCCCHHH T ss_conf 9999989995585889999999879997---8999979567632222112211556642153352320477788121111 Q ss_pred CC----CCCHHHHHHHHHHHHCC Q ss_conf 14----79989999984885206 Q gi|254780807|r 148 RA----LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA----~a~l~~ll~~~~pllk~ 166 (168) +. +.+...++.-..+.||+ T Consensus 112 ~~~l~~~~d~~~~l~~~~rvLkp 134 (276) T 3mgg_A 112 CFVLEHLQSPEEALKSLKKVLKP 134 (276) T ss_dssp ESCGGGCSCHHHHHHHHHHHEEE T ss_pred HHHHHHCHHHHHHHHHHHHHCCC T ss_conf 12463130599999999997480 No 5 >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15} Probab=98.61 E-value=2.7e-07 Score=61.68 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=77.3 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168) ++.+..++|+|+|.|.-++.+|...|+- .|+.+|.+...+...++-+++++..+ +++++...+.......||.|+. T Consensus 38 l~pg~~VLDiG~GsG~la~~~a~~~~~~---~V~aiD~~~~~~~~a~~n~~~~g~~~~~~~~g~~~~~~~~~~~~D~i~i 114 (204) T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFI 114 (204) T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEE T ss_pred CCCCCEEEEEEEEHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEE T ss_conf 9993999998310789999999978996---7999949999999999999981998589973453234543578769999 Q ss_pred CCC-CCHHHHHHHHHHHHCCC Q ss_conf 147-99899999848852067 Q gi|254780807|r 148 RAL-ADLDTLLEYSFPWLYQK 167 (168) Q Consensus 148 RA~-a~l~~ll~~~~pllk~k 167 (168) -.. ..+..+++.+...|++. T Consensus 115 ~~~~~~~~~~l~~~~~~L~pG 135 (204) T 3e05_A 115 GGSGGMLEEIIDAVDRRLKSE 135 (204) T ss_dssp SCCTTCHHHHHHHHHHHCCTT T ss_pred CCCCCCHHHHHHHHHHHCCCC T ss_conf 065523589999999854899 No 6 >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Probab=98.60 E-value=6.3e-07 Score=59.60 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=81.7 Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHH Q ss_conf 86463564310012344311111467733565652275546634787500003899999999973898--0998042665 Q gi|254780807|r 57 RHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQE 134 (168) Q Consensus 57 rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~ 134 (168) .++++-+.....++.+.+|+|||+|.|.+.+.+|-.+ +..|+.+|.+..-+...++...+.++. ++++++.+++ T Consensus 68 ~~~~~~l~~~~~l~~~~~VLDiGCG~G~~~~~la~~~----g~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~ 143 (297) T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297) T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCC T ss_conf 9999999984698999989998899998999999963----985999967427788887644320567662278612225 Q ss_pred HHHCCCCCCEEEECC----CCCHHHHHHHHHHHHCC Q ss_conf 331247986999914----79989999984885206 Q gi|254780807|r 135 APQMITTCDVISARA----LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 135 ~~~~~~~~d~v~sRA----~a~l~~ll~~~~pllk~ 166 (168) ++-..+.||.|+|.. +..+..++.-+...||+ T Consensus 144 l~~~~~~fD~V~~~~~l~h~~d~~~~l~~~~r~Lkp 179 (297) T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP 179 (297) T ss_dssp CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE T ss_pred CCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHCCC T ss_conf 676665110999857244237999999999997198 No 7 >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125} Probab=98.58 E-value=2.4e-07 Score=62.03 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=78.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHH-HH--CCCCCCE Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653-31--2479869 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEA-PQ--MITTCDV 144 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~-~~--~~~~~d~ 144 (168) .++.+|++||||.|+.++.+|-..|+- .|+.+|.+.+.....++..++.|++ ++++.+++.+. +. ....||+ T Consensus 53 ~~~~~VLEIGtg~G~Stl~la~~~p~~---~v~tiD~~~~~~~~A~~~~~~~gl~~~I~~~~gda~d~l~~l~~~~~fD~ 129 (233) T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233) T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCCC---EEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCE T ss_conf 589989996112129999999878997---79999704899999999999974212112653328777775113577628 Q ss_pred EEECCC-CCHHHHHHHHHHHHCC Q ss_conf 999147-9989999984885206 Q gi|254780807|r 145 ISARAL-ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~-a~l~~ll~~~~pllk~ 166 (168) |...|- ......++.+.++|++ T Consensus 130 ifiD~~k~~~~~~~~~~~~lL~~ 152 (233) T 2gpy_A 130 LFIDAAKGQYRRFFDMYSPMVRP 152 (233) T ss_dssp EEEEGGGSCHHHHHHHHGGGEEE T ss_pred EEECCCHHHHHHHHHHHHHHCCC T ss_conf 99727667689999999834288 No 8 >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus} Probab=98.53 E-value=2.4e-07 Score=61.96 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=63.0 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH-HHCCCCCC Q ss_conf 31001234431111146773356565227554663478750000389999999997389809980426653-31247986 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA-PQMITTCD 143 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~-~~~~~~~d 143 (168) ...+.+.+.+|+|+|||+|.-++.+|-.+|+.+ |+.+|-++.-+...+.-++..+++..+........ +...++|| T Consensus 49 ~~~~~~~~~~vLDig~G~G~~~~~~a~~~~~~~---v~~vDi~~~~~~~a~~n~~~~~~~~~i~~~~~~~~~~~~~~~fD 125 (230) T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCK---VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFD 125 (230) T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCE---EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEE T ss_pred HHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCE---EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCC T ss_conf 984578989899940744399999999779987---99998863112467766886066517998521101213576524 Q ss_pred EEEE Q ss_conf 9999 Q gi|254780807|r 144 VISA 147 (168) Q Consensus 144 ~v~s 147 (168) +|+| T Consensus 126 ~Iv~ 129 (230) T 3evz_A 126 VIFS 129 (230) T ss_dssp EEEE T ss_pred EEEE T ss_conf 8998 No 9 >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Probab=98.52 E-value=2.5e-07 Score=61.95 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=69.9 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 12344311111467733565652275546634787500003899999999973898099804266533124798699991 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|+|+|+|.|...+.++.- ++.+|+.+|-+.+-+...++...+.+++++++++.+++++-..+.||+|+|+ T Consensus 21 ~~~~~~VLDiGcG~G~~~~~~~~~----~~~~v~gvD~S~~~i~~a~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~I~s~ 96 (209) T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE----DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSY 96 (209) T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH----TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEEC T ss_pred CCCCCEEEEEECCCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCHHHHH T ss_conf 069898999727889999999985----8998999959799999998622035743653002022368543423388876 Q ss_pred CCCC------HHHHHHHHHHHHCC Q ss_conf 4799------89999984885206 Q gi|254780807|r 149 ALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~------l~~ll~~~~pllk~ 166 (168) .+-. +...++-....||+ T Consensus 97 ~~l~h~~~~~~~~~l~~~~r~Lkp 120 (209) T 2p8j_A 97 GTIFHMRKNDVKEAIDEIKRVLKP 120 (209) T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEE T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 678728847899999999987585 No 10 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Probab=98.49 E-value=4.3e-07 Score=60.56 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=75.6 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 12344311111467733565652275546634787500003899999999973898099804266533124798699991 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) .+++.+|+|+|+|.|.-++.+|=..|. +..|+.+|.++.-+...++.....+++++.+++.+++++- ..+||+|+++ T Consensus 20 ~~~~~~ILDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~V~~~ 96 (284) T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPE--GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICH 96 (284) T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCT--TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCC-CCCEEEEEEH T ss_conf 699897999548798999999985779--9889998498999999998666414200120011124798-9975799886 Q ss_pred CC----CCHHHHHHHHHHHHCC Q ss_conf 47----9989999984885206 Q gi|254780807|r 149 AL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~----a~l~~ll~~~~pllk~ 166 (168) .+ .++..+++-....||+ T Consensus 97 ~~l~h~~d~~~~l~~~~~~Lkp 118 (284) T 3gu3_A 97 AFLLHMTTPETMLQKMIHSVKK 118 (284) T ss_dssp SCGGGCSSHHHHHHHHHHTEEE T ss_pred HHHHCCCCHHHHHHHHHHHCCC T ss_conf 4765678899999999998388 No 11 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Probab=98.47 E-value=4.5e-07 Score=60.42 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=74.5 Q ss_pred HHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCC Q ss_conf 64310012344311111467733565652275546634787500003899999999973898--0998042665331247 Q gi|254780807|r 63 LRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMIT 140 (168) Q Consensus 63 l~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~ 140 (168) +...+-.+.+.+|+|||+|.|.-.+.+|=..+ ..|+.+|.++.-+.+.++-..+.++. ++++++.+++++-..+ T Consensus 38 l~~l~~l~~~~~VLDIGCG~G~~~~~lA~~~~----~~V~giD~s~~~l~~a~~~~~~~~l~~~v~~~~~d~~~l~~~~~ 113 (267) T 3kkz_A 38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT----GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE 113 (267) T ss_dssp HTTCCCCCTTCEEEEETCTTCHHHHHHHTTCS----SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT T ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHHCC----CEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCC T ss_conf 98172799999899962789799999997479----98999979731658988732323444331001001235677888 Q ss_pred CCCEEEECCCC---CHHHHHHHHHHHHCC Q ss_conf 98699991479---989999984885206 Q gi|254780807|r 141 TCDVISARALA---DLDTLLEYSFPWLYQ 166 (168) Q Consensus 141 ~~d~v~sRA~a---~l~~ll~~~~pllk~ 166 (168) +||.|+|.++. +.+..+.-...+||+ T Consensus 114 ~FD~I~s~~~l~~~~~~~~l~~i~r~Lkp 142 (267) T 3kkz_A 114 ELDLIWSEGAIYNIGFERGLNEWRKYLKK 142 (267) T ss_dssp CEEEEEESSCGGGTCHHHHHHHHGGGEEE T ss_pred CEEEEEECHHHHHCCHHHHHHHHHHHCCC T ss_conf 46689740437838989999999996597 No 12 >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Probab=98.43 E-value=7.4e-07 Score=59.17 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=76.5 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCC Q ss_conf 3100123443111114677335656522755466347875000038999999999738980-998042665331247986 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCD 143 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d 143 (168) +...+..+..++|+|+|.|.-+|++|-..+.. .|+.+|.++..+.++++-++..++++ .++++.+.++. ...+|| T Consensus 113 i~~~v~~ge~VlDl~aG~G~~~i~~ak~~~~~---~V~aiDinp~av~~l~~N~~~N~v~n~~~i~~D~r~~~-~~~~fD 188 (272) T 3a27_A 113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPK---LVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-LKDVAD 188 (272) T ss_dssp HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCS---EEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-CTTCEE T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCCCE---EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCC T ss_conf 87345899999993786588999987506950---99999599999999999999849997599927765345-578888 Q ss_pred EEEECCCCCHHHHHHHHHHHHCC Q ss_conf 99991479989999984885206 Q gi|254780807|r 144 VISARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 144 ~v~sRA~a~l~~ll~~~~pllk~ 166 (168) .|+.-.......+++.+.++|++ T Consensus 189 ~Vimn~p~~s~~fl~~a~~~lk~ 211 (272) T 3a27_A 189 RVIMGYVHKTHKFLDKTFEFLKD 211 (272) T ss_dssp EEEECCCSSGGGGHHHHHHHEEE T ss_pred EEEECCCCCHHHHHHHHHHHCCC T ss_conf 99978951279999999996289 No 13 >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Probab=98.39 E-value=2.1e-06 Score=56.58 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=78.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH-HHCCCCCCEEEEC Q ss_conf 3443111114677335656522755466347875000038999999999738980-9980426653-3124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA-PQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~-~~~~~~~d~v~sR 148 (168) .+.+++|+|+|.|.-++.++-..|.. .|+.+|.+...+...++-..+.++.+ ++++..+.+. ......+|.+..- T Consensus 25 pg~~vLDiGcG~G~~a~~~a~~~~~~---~V~avD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 101 (178) T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQT---TAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178) T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSE---EEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCEEEEC T ss_conf 97999997668888999999968977---698850899999999999998199978999943620022467888899992 Q ss_pred CCCCHHHHHHHHHHHHCCC Q ss_conf 4799899999848852067 Q gi|254780807|r 149 ALADLDTLLEYSFPWLYQK 167 (168) Q Consensus 149 A~a~l~~ll~~~~pllk~k 167 (168) ...+++.+++-+.+.||+. T Consensus 102 ~~~~~~~~l~~~~~~LkpG 120 (178) T 3hm2_A 102 GGLTAPGVFAAAWKRLPVG 120 (178) T ss_dssp C-TTCTTHHHHHHHTCCTT T ss_pred CCCCHHHHHHHHHHHCCCC T ss_conf 7335799999999847998 No 14 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=98.38 E-value=1.4e-06 Score=57.55 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=76.8 Q ss_pred HHHHHHHHH-HC--CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHH Q ss_conf 646356431-00--123443111114677335656522755466347875000038999999999738980-99804266 Q gi|254780807|r 58 HVEDSLRVF-QL--HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQ 133 (168) Q Consensus 58 Hi~DSl~~~-~~--~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e 133 (168) |--+|+.+. .. ++.+.+|+|||+|.|.-...+|=. ...|+.||.++.-+...+.-....++++ .++++.++ T Consensus 5 ~~~~~~~~l~~~~~~~pg~rVLDiGCGtG~~~~~la~~-----~~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~d~~ 79 (239) T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 79 (239) T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 01658999999858999898999588685999999970-----9979999799999999998654305654000102223 Q ss_pred HHHHCCCCCCEEEECCCC----CHHHHHHHHHHHHCC Q ss_conf 533124798699991479----989999984885206 Q gi|254780807|r 134 EAPQMITTCDVISARALA----DLDTLLEYSFPWLYQ 166 (168) Q Consensus 134 ~~~~~~~~~d~v~sRA~a----~l~~ll~~~~pllk~ 166 (168) +++-...+||+|+|..+- .+..+++-..+.||+ T Consensus 80 ~l~~~d~~fD~v~~~~~l~~~~d~~~~l~ei~r~Lkp 116 (239) T 1xxl_A 80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQ 116 (239) T ss_dssp BCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE T ss_pred CCCCCCCCEEEEHHCCCHHCCCCHHHHHHHHHHHCCC T ss_conf 5688887365302045122246899999999998083 No 15 >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Probab=98.38 E-value=1.9e-06 Score=56.87 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=80.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHH-------------CCC-----CCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECC Q ss_conf 799989999999999999984-------------632-----13043089999989864635643100123443111114 Q gi|254780807|r 19 YNVSRETLEKLEYFYFLFLKW-------------SKK-----INLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGS 80 (168) Q Consensus 19 ~~ls~eq~~~l~~y~~ll~~~-------------N~~-----~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGS 80 (168) ..+++++.+++....+...+- +.. -=|+=+-+.|.+.+ ..+. .....+.+++|+|| T Consensus 45 ~~l~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~g~~f~v~~~vlIPRpeTE~lv~-~~l~-----~~~~~~~~ilDlgt 118 (276) T 2b3t_A 45 TQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVE-QALA-----RLPEQPCRILDLGT 118 (276) T ss_dssp CBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHH-HHHH-----HSCSSCCEEEEETC T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCCEEEECCCCCCCCCHHHHHHH-HHHH-----HCCCCCCEEEEECC T ss_conf 88999999999999999986996679738237879278758877069976999999-9987-----51457861764146 Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 67733565652275546634787500003899999999973898-099804266533124798699991 Q gi|254780807|r 81 GGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 81 GaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) |.|.=|+.+|..+|+.+ |+.+|-+.+-+...++-++.++++ +.++++..-+... ..+||+|+|- T Consensus 119 GsG~I~i~la~~~p~~~---v~a~Dis~~Al~~A~~Na~~~~~~~v~~~~~D~~~~~~-~~~fDlIvsN 183 (276) T 2b3t_A 119 GTGAIALALASERPDCE---IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA-GQQFAMIVSN 183 (276) T ss_dssp TTSHHHHHHHHHCTTSE---EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT-TCCEEEEEEC T ss_pred CCHHHHHHHHHHCCCCE---EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-CCCEEEEEEC T ss_conf 53299999998689875---88641766889999999997499877999757643367-8841578856 No 16 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Probab=98.38 E-value=2e-06 Score=56.74 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=69.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEE Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~s 147 (168) .+++.|+|+|+|.|+.++..|-. ...+|+.+|.++ -+...++++...++. +++++++++++.-..++||+|+| T Consensus 56 ~~~~~VLDiG~G~G~ls~~aa~~----Ga~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~~~~~~~~l~~~~~~~Dvivs 130 (340) T 1or8_A 56 FKDKVVLDVGSGTGILCMFAAKA----GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 130 (340) T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHC----CCCEEEEECCHH-HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCEEEE T ss_conf 59497999837887999999980----898899964619-9999999999728783279997313430378653107997 Q ss_pred CCC-----C--CHHHHHHHHHHHHCC Q ss_conf 147-----9--989999984885206 Q gi|254780807|r 148 RAL-----A--DLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~-----a--~l~~ll~~~~pllk~ 166 (168) --+ . .++.++....++|++ T Consensus 131 E~~~~~l~~e~~l~~~~~a~~rlLkp 156 (340) T 1or8_A 131 EWMGYCLFYESMLNTVLHARDKWLAP 156 (340) T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEE T ss_pred EECHHCCCCHHHHHHHHHHHHHHCCC T ss_conf 50101044067789999999962778 No 17 >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Probab=98.37 E-value=1.8e-06 Score=56.99 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=82.3 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHH-------------CCCC-----CEEEECCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 666641799989999999999999984-------------6321-----3043089999989864635643100123443 Q gi|254780807|r 13 NYLLNTYNVSRETLEKLEYFYFLFLKW-------------SKKI-----NLVSSSTVEDFWIRHVEDSLRVFQLHPYPSI 74 (168) Q Consensus 13 ~~l~~~~~ls~eq~~~l~~y~~ll~~~-------------N~~~-----NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ 74 (168) .++++...++.++.+++....+...+- +..+ =|+=+-+.| .+...+++.. ....... T Consensus 52 ~l~~~~~~l~~~~~~~~~~li~rR~~g~Pl~YI~G~~~F~g~~f~V~~~VLIPRpeTE-~Lve~~~~~~----~~~~~~~ 126 (284) T 1nv8_A 52 DLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETE-ELVELALELI----RKYGIKT 126 (284) T ss_dssp GGCCSSCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHH-HHHHHHHHHH----HHHTCCE T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCEEEECCEEEEEECCCCCCCCHHH-HHHHHHHHHH----HCCCCCE T ss_conf 9823778899999999999999997699788930242796838998166412887589-9999888765----0378867 Q ss_pred CEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHH-HHCCCCCCEEEEC Q ss_conf 111114677335656522755466347875000038999999999738980--9980426653-3124798699991 Q gi|254780807|r 75 WIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEA-PQMITTCDVISAR 148 (168) Q Consensus 75 ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~-~~~~~~~d~v~sR 148 (168) ++|+|||+|.=|+.+| -+|+. .|+.+|.+.+-+...++-++++++.+ .++++...+. +....+||+|+|- T Consensus 127 vlDlgtGSG~I~isla-~~p~~---~V~avDiS~~Al~vA~~Na~~~~~~~~~~~~~~d~~~~~~~~~~~fDlIVSN 199 (284) T 1nv8_A 127 VADIGTGSGAIGVSVA-KFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 199 (284) T ss_dssp EEEESCTTSHHHHHHH-HHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC T ss_pred EEEEECCHHHHHHHHH-HHHCC---CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC T ss_conf 9986046059887676-52014---5167639799999999999844898629999632100141126753089967 No 18 >3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A Probab=98.36 E-value=2.3e-06 Score=56.32 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=66.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +++.|+|||+|.|+-++..|-. ....|+.+|++. -+...++.+++.++. +++++++++++. ..+++|+|+|- T Consensus 46 ~~~~VLDiGcG~G~ls~~aa~~----Ga~~V~~~e~s~-~~~~~~~~~~~n~~~~~I~~i~~~~~~l~-l~~~~Dvivse 119 (341) T 3b3f_A 46 KDKIVLDVGCGSGILSFFAAQA----GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISE 119 (341) T ss_dssp TTCEEEEESCTTSHHHHHHHHT----TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEECC T ss_pred CCCEEEEECCCCCHHHHHHHHC----CCCEEEEEECCH-HHHHHHHHHHHCCCCCCCEEEEEEHHHCC-CCCCCCEEEEE T ss_conf 9798999666853999999976----999899997909-99999999998599864007960366525-67663379875 Q ss_pred CCCC------HHHHHHHHHHHHCC Q ss_conf 4799------89999984885206 Q gi|254780807|r 149 ALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~------l~~ll~~~~pllk~ 166 (168) -+.. +...+..+.++||+ T Consensus 120 ~~~~~l~~E~~~~~l~~ar~~Lkp 143 (341) T 3b3f_A 120 PMGYMLFNERMLESYLHAKKYLKP 143 (341) T ss_dssp CCBTTBTTTSHHHHHHHGGGGEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 011124442146679999973578 No 19 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Probab=98.34 E-value=1.6e-06 Score=57.20 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=66.0 Q ss_pred HHHHHHHHHHCCC---CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHH Q ss_conf 6463564310012---344311111467733565652275546634787500003899999999973898--09980426 Q gi|254780807|r 58 HVEDSLRVFQLHP---YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRI 132 (168) Q Consensus 58 Hi~DSl~~~~~~~---~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~ 132 (168) --.|++.+..+.. .+.+++|+|+|.|.-++.+|- +++ ..|+.||.++.-+...++-++..++. ++++++.+ T Consensus 33 ~~~D~~lLa~~~~~~~~~~~vLDlG~G~G~~~l~la~-~~~---~~v~~vDi~~~~~~~A~~N~~~n~l~~~v~~~~~D~ 108 (259) T 3lpm_A 33 FSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLST-RTK---AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108 (259) T ss_dssp CCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHT-TCC---CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG T ss_pred CCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH-CCC---CEEEEEECCHHHHHHHHHHHHHCCCCHHHEEEEHHH T ss_conf 6217999998850866799799972585899999986-789---889999998999999999998607330112330011 Q ss_pred HHHHHC--CCCCCEEEE Q ss_conf 653312--479869999 Q gi|254780807|r 133 QEAPQM--ITTCDVISA 147 (168) Q Consensus 133 e~~~~~--~~~~d~v~s 147 (168) .++... .++||+|++ T Consensus 109 ~~~~~~~~~~~fD~Iv~ 125 (259) T 3lpm_A 109 KKITDLIPKERADIVTC 125 (259) T ss_dssp GGGGGTSCTTCEEEEEE T ss_pred HHHHHCCCCCCCCEEEE T ss_conf 10001035542547885 No 20 >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Probab=98.33 E-value=1.8e-06 Score=56.91 Aligned_cols=96 Identities=11% Similarity=-0.035 Sum_probs=72.5 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEE Q ss_conf 10012344311111467733565652275546634787500003899999999973898099804266533124798699 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVI 145 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v 145 (168) .++++++.+|+|||+|.|.=.+++|= .+..|+.+|.+..-+...++-....+.+...+++.+++++-..+.||+| T Consensus 33 ~~~~~~~~rVLDiGCG~G~~~~~la~-----~~~~v~g~D~s~~~l~~ak~~~~~~~~~~~~~~~d~~~l~~~~~sfD~V 107 (227) T 1ve3_A 33 MKYMKKRGKVLDLACGVGGFSFLLED-----YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYV 107 (227) T ss_dssp HHSCCSCCEEEEETCTTSHHHHHHHH-----TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEE T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHH-----CCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 98479989799986888899999996-----5998999967504689999988752765333346533488767705899 Q ss_pred EECCCCC------HHHHHHHHHHHHCC Q ss_conf 9914799------89999984885206 Q gi|254780807|r 146 SARALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~------l~~ll~~~~pllk~ 166 (168) +|..+-. +..+++-+...||+ T Consensus 108 ~~~~~l~~~~~~d~~~~l~~~~r~Lkp 134 (227) T 1ve3_A 108 IFIDSIVHFEPLELNQVFKEVRRVLKP 134 (227) T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHEEE T ss_pred EEEHHHHHCCHHHHHHHHHHHHHHCCC T ss_conf 860017729876899999999998380 No 21 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Probab=98.33 E-value=1.6e-06 Score=57.24 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=71.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ++++++|+|+|.|...+.+|=. +. .+|+.+|.++.-+...++.+...++. .+++++.+++.+-..++||+|+|. T Consensus 43 ~~~~VLDiGcG~G~~~~~la~~-~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 118 (219) T 3dlc_A 43 TAGTCIDIGSGPGALSIALAKQ-SD---FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSR 118 (219) T ss_dssp CEEEEEEETCTTSHHHHHHHHH-SE---EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHH-CC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEC T ss_conf 9993999627585999999953-69---9899997978999999874442166664000136533567544555299984 Q ss_pred CC----CCHHHHHHHHHHHHCC Q ss_conf 47----9989999984885206 Q gi|254780807|r 149 AL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~----a~l~~ll~~~~pllk~ 166 (168) .+ ..+..+++-+.+.||+ T Consensus 119 ~~l~h~~d~~~~l~~~~r~Lkp 140 (219) T 3dlc_A 119 GSVFFWEDVATAFREIYRILKS 140 (219) T ss_dssp SCGGGCSCHHHHHHHHHHHEEE T ss_pred CHHHHCCCHHHHHHHHHHHCCC T ss_conf 4167458999999999998580 No 22 >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Probab=98.32 E-value=1.7e-06 Score=57.07 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=70.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC---EEEECHH Q ss_conf 9864635643100123443111114677335656522755466347875000038999999999738980---9980426 Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG---KVFACRI 132 (168) Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~---~vi~~r~ 132 (168) .+.+++.+. ...+++++|+|+|.|..++.+|=.. ..++.+|-+..-+...++-++..++++ +++++.+ T Consensus 41 t~~Ll~~l~----~~~~~~vLDiGcG~G~~~~~la~~~-----~~v~~iDis~~~i~~a~~n~~~~~l~~~~i~~~~~D~ 111 (194) T 1dus_A 41 TKILVENVV----VDKDDDILDLGCGYGVIGIALADEV-----KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111 (194) T ss_dssp HHHHHHHCC----CCTTCEEEEETCTTSHHHHHHGGGS-----SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST T ss_pred HHHHHHHCC----CCCCCEEEEECCCCCHHHHHHHHHC-----CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCH T ss_conf 999998289----8899949995696429999999738-----8479982636788999999998199986199998736 Q ss_pred HHHHHCCCCCCEEEECCC-----CCHHHHHHHHHHHHCC Q ss_conf 653312479869999147-----9989999984885206 Q gi|254780807|r 133 QEAPQMITTCDVISARAL-----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 133 e~~~~~~~~~d~v~sRA~-----a~l~~ll~~~~pllk~ 166 (168) .+... ..+||+|++-.. ..+..+++-+...||+ T Consensus 112 ~~~~~-~~~fD~Ii~~~~~~~~~~~~~~~l~~~~~~Lkp 149 (194) T 1dus_A 112 YENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD 149 (194) T ss_dssp TTTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE T ss_pred HHHCC-CCCCCEEEECCCHHCCCHHHHHHHHHHHHHCCC T ss_conf 76335-677439999952211615679999999996096 No 23 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Probab=98.32 E-value=1.9e-06 Score=56.86 Aligned_cols=95 Identities=19% Similarity=0.099 Sum_probs=74.0 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEE Q ss_conf 123443111114677335656522-75546634787500003899999999973898-0998042665331247986999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~ 146 (168) ++.+.+|+|+|+|.|.-...+|=. .|+ ..|+.+|.+...+...++-+.+.++. +..+.+.+++++-..+.||+|+ T Consensus 35 l~~g~~VLDiGcG~G~~~~~la~~~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~lp~~~~sfD~V~ 111 (219) T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEK---GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIF 111 (219) T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEEEEHHHHHHHHHHHHHHHHCCEEHHHHHHHHCCCCCCCCEEEHH T ss_conf 8993999998788887799999750898---3999985003778899997676402210010003332775555421357 Q ss_pred ECCC----CCHHHHHHHHHHHHCC Q ss_conf 9147----9989999984885206 Q gi|254780807|r 147 ARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~----a~l~~ll~~~~pllk~ 166 (168) +..+ ......++-..+.||+ T Consensus 112 ~~~~l~~~~d~~~~l~ei~rvLkp 135 (219) T 3dh0_A 112 MAFTFHELSEPLKFLEELKRVAKP 135 (219) T ss_dssp EESCGGGCSSHHHHHHHHHHHEEE T ss_pred HCCHHHHCCCHHHHHHHHHHHCCC T ss_conf 314042077999999999998683 No 24 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Probab=98.31 E-value=2.7e-06 Score=55.92 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=71.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 2344311111467733565652275546634787500003899999999973898-099804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +.+.+|+|||+|.|.....++=. ...|+.+|.++.-+...++-....++. .+++++.+++++-..++||.|+++ T Consensus 36 ~~~~~VLDiGcG~G~~~~~la~~-----~~~v~g~D~s~~~~~~a~~~~~~~g~~~i~~~~~d~~~l~~~~~sfD~V~~~ 110 (260) T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPF-----VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCR 110 (260) T ss_dssp CSCCEEEEETCTTCHHHHHHGGG-----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEE T ss_conf 99299999546471999999972-----9969999899999998661222245665247751123578777855799870 Q ss_pred CC----CCHHHHHHHHHHHHCC Q ss_conf 47----9989999984885206 Q gi|254780807|r 149 AL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~----a~l~~ll~~~~pllk~ 166 (168) .+ ..+..++.-....||+ T Consensus 111 ~~l~h~~d~~~~l~~~~r~LkP 132 (260) T 1vl5_A 111 IAAHHFPNPASFVSEAYRVLKK 132 (260) T ss_dssp SCGGGCSCHHHHHHHHHHHEEE T ss_pred CCHHHCCCHHHHHHHHHHHCCC T ss_conf 2255268999999999974285 No 25 >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca} Probab=98.30 E-value=3.4e-06 Score=55.37 Aligned_cols=95 Identities=13% Similarity=0.062 Sum_probs=77.3 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEE Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~s 147 (168) .++++|++||||.|+=.+-+|-..|+ .++++.+|.++..+...++..++.++. ++++++.+.+......+||+|+. T Consensus 55 ~~~~~ILEiGtg~G~st~~la~~~~~--~g~v~~id~~~~~~~~ar~~~~~~g~~~~i~~~~gda~~~~~~~~~fDlifi 132 (210) T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISI--SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132 (210) T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCT--TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE T ss_pred HCCCEEEEEECCCHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEE T ss_conf 68098999508143999999997556--8199999775103789998798729873267861345430223688678998 Q ss_pred CCC-CCHHHHHHHHHHHHCC Q ss_conf 147-9989999984885206 Q gi|254780807|r 148 RAL-ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~-a~l~~ll~~~~pllk~ 166 (168) -|- ......++.+.++|++ T Consensus 133 D~~~~~~~~~~~~~~~~L~p 152 (210) T 3c3p_A 133 DCDVFNGADVLERMNRCLAK 152 (210) T ss_dssp ETTTSCHHHHHHHHGGGEEE T ss_pred CCCHHHHHHHHHHHHHHCCC T ss_conf 57566679999998604487 No 26 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Probab=98.27 E-value=7.1e-06 Score=53.51 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=64.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389--8099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +++.|+|||+|.|+-++.+|-. ...+|+.+|.++. .....+.+++.++ ++++++++++++.....+||+|+|- T Consensus 64 ~~k~VLDlGcGtG~ls~~aA~~----Ga~~V~avd~s~~-~~~a~~~~~~~~~~~~i~~i~~d~~~l~~~~~~~D~ivse 138 (340) T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKA----GAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE 138 (340) T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHC----CCCEEEEEECCHH-HHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCEEEEE T ss_conf 9698999327747999999975----9988999809899-9999999997454775168981488764764667689996 Q ss_pred CCCC-------HHHHHHHHHHHHCC Q ss_conf 4799-------89999984885206 Q gi|254780807|r 149 ALAD-------LDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~-------l~~ll~~~~pllk~ 166 (168) -+.. +..++.....+||+ T Consensus 139 ~~~~~~~~e~~~~~l~~~~~r~Lkp 163 (340) T 2fyt_A 139 WMGYFLLFESMLDSVLYAKNKYLAK 163 (340) T ss_dssp CCBTTBTTTCHHHHHHHHHHHHEEE T ss_pred CCCEECCCHHHHHHHHHHHHHCCCC T ss_conf 3210045547789999999724699 No 27 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Probab=98.26 E-value=6.3e-06 Score=53.79 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=72.5 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHHHHHCCCCCCEEEE Q ss_conf 234431111146773356565227554663478750000389999999997389-80-9980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168) ..+.+++|+|+|.|.=++. ++.+ ..+|+.+|.+...+...++.++++++ ++ +++++.+.+.......||.|++ T Consensus 32 ~~g~~VLDiGcG~G~~s~~--la~~---~~~V~avD~~~~~~~~a~~~~~~~gl~~~v~~~~gd~~~~~~~~~~~D~v~~ 106 (192) T 1l3i_A 32 GKNDVAVDVGCGTGGVTLE--LAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV 106 (192) T ss_dssp CTTCEEEEESCTTSHHHHH--HHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE T ss_pred CCCCEEEEEECCHHHHHHH--HHHC---CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCEEEE T ss_conf 9979999983870499999--9843---9999999906288999999999809998889998862105300088688999 Q ss_pred CC-CCCHHHHHHHHHHHHCC Q ss_conf 14-79989999984885206 Q gi|254780807|r 148 RA-LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA-~a~l~~ll~~~~pllk~ 166 (168) -. ...+..+++.+...||+ T Consensus 107 ~~~~~~~~~~l~~~~~~Lkp 126 (192) T 1l3i_A 107 GGSGGELQEILRIIKDKLKP 126 (192) T ss_dssp SCCTTCHHHHHHHHHHTEEE T ss_pred ECCHHHHHHHHHHHHHHCCC T ss_conf 18034699999999996799 No 28 >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Probab=98.25 E-value=1.5e-06 Score=57.43 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=64.3 Q ss_pred HHHHHHHHHHHHHCCC-CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECH Q ss_conf 8986463564310012-3443111114677335656522755466347875000038999999999738980--998042 Q gi|254780807|r 55 WIRHVEDSLRVFQLHP-YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACR 131 (168) Q Consensus 55 ~~rHi~DSl~~~~~~~-~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r 131 (168) |..+|.|-|......+ ...+++|+|||+|.=++.||-.+|+++ ++.+|-+..-+..-++-++..+++. .+++.. T Consensus 48 y~~~i~dlL~~~~~~~~~~~~~lDiGtGsg~I~~~L~~~~~~~~---~~~~Di~~~al~~A~~N~~~n~l~~~i~~~~~~ 124 (254) T 2h00_A 48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWY---FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 124 (254) T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 99999999705466667775489956787899999999779975---999989999999999999983876522456523 Q ss_pred HHH-H-----HHCCCCCCEEEEC Q ss_conf 665-3-----3124798699991 Q gi|254780807|r 132 IQE-A-----PQMITTCDVISAR 148 (168) Q Consensus 132 ~e~-~-----~~~~~~~d~v~sR 148 (168) ... + .....+||+|+|= T Consensus 125 ~~~~i~~~~~~~~~~~fD~iv~N 147 (254) T 2h00_A 125 QKTLLMDALKEESEIIYDFCMCN 147 (254) T ss_dssp TTCSSTTTSTTCCSCCBSEEEEC T ss_pred HHHHHHHHHHHHCCCCEEEEEEC T ss_conf 27767666666436765499936 No 29 >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Probab=98.24 E-value=5.8e-06 Score=54.02 Aligned_cols=97 Identities=12% Similarity=-0.026 Sum_probs=68.2 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCC Q ss_conf 310012344311111467733565652275546634787500003899999999973898--099804266533124798 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTC 142 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~ 142 (168) ++.+++.+.+++|||||.|+=++.++-..+. .+|+.+|-++.-+.-.++-+++.++. .+++.+...+.......+ T Consensus 15 ia~~v~~g~~vlDiGcg~G~l~~~l~~~~~~---~~V~avDi~~~~l~~A~~n~~~~gl~~~I~~~~~D~~~~~~~~~~~ 91 (244) T 3gnl_A 15 VASYITKNERIADIGSDHAYLPCFAVKNQTA---SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI 91 (244) T ss_dssp HHTTCCSSEEEEEETCSTTHHHHHHHHTTSE---EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCC T ss_conf 9965899998999718648999999980999---8899963889999999999998299986799988750432155787 Q ss_pred CEEEECCCCCHHH---HHHHHHHHHC Q ss_conf 6999914799899---9998488520 Q gi|254780807|r 143 DVISARALADLDT---LLEYSFPWLY 165 (168) Q Consensus 143 d~v~sRA~a~l~~---ll~~~~pllk 165 (168) |.++.-.. .... +++-..+.|+ T Consensus 92 d~~viag~-g~~~i~~il~~~~~~l~ 116 (244) T 3gnl_A 92 DTIVIAGM-GGTLIRTILEEGAAKLA 116 (244) T ss_dssp CEEEEEEE-CHHHHHHHHHHTGGGGT T ss_pred CEEEECCC-CHHHHHHHHHHHHHHHC T ss_conf 68998488-88999999999899707 No 30 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=98.24 E-value=8.7e-06 Score=52.99 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=68.7 Q ss_pred CCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEE- Q ss_conf 23443111114677-335656522755466347875000038999999999738980-998042665331247986999- Q gi|254780807|r 70 PYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVIS- 146 (168) Q Consensus 70 ~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~- 146 (168) +.+.+|+|||||.| +..+.+| -+|. .+|+.||.+...+..-++.++.+++++ +++++.+...+. .+||+|+ T Consensus 121 ~~g~rVLdiGcG~g~~t~~~~a-~~~g---~~V~gIDisp~~~~~Ar~~~~~~g~~~v~~~~gD~~~l~~--~~fDvV~v 194 (298) T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLS-HVYG---MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDG--LEFDVLMV 194 (298) T ss_dssp CTTCEEEEECCCSSCHHHHHHH-HTTC---CEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGG--CCCSEEEE T ss_pred CCCCEEEEEECCCHHHHHHHHH-HCCC---CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCCCEEEE T ss_conf 9999899960685699999998-5689---9899996999999999997986499508999735544789--99898998 Q ss_pred ECCCCCHHHHHHHHHHHHCC Q ss_conf 91479989999984885206 Q gi|254780807|r 147 ARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~a~l~~ll~~~~pllk~ 166 (168) +..+.+...+++-..+.+++ T Consensus 195 a~~v~~~~~vl~~l~r~Lkp 214 (298) T 3fpf_A 195 AALAEPKRRVFRNIHRYVDT 214 (298) T ss_dssp CTTCSCHHHHHHHHHHHCCT T ss_pred CCCCCCHHHHHHHHHHHCCC T ss_conf 98773799999999986698 No 31 >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Probab=98.23 E-value=2.4e-06 Score=56.28 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=62.2 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ..++++|+|+|+|.-++.++-..|+.+ |+++|.+..-+...+.-....++++.++.+..-+ ....+||.|++- T Consensus 196 ~~~~VLDlGcG~G~l~~~la~~~p~~~---v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~~~--~~~~~fD~Iv~N 268 (343) T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIR---LTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISN 268 (343) T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCB---CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHH--CCCCCCCEEEEC T ss_conf 898299932527799999999789978---9999899999999999999849937999644012--266554589988 No 32 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Probab=98.22 E-value=2.6e-06 Score=56.05 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH---HCC-- Q ss_conf 99998986463564310012--34431111146773356565227554663478750000389999999997---389-- Q gi|254780807|r 51 VEDFWIRHVEDSLRVFQLHP--YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK---TAA-- 123 (168) Q Consensus 51 ~~~~~~rHi~DSl~~~~~~~--~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~---L~L-- 123 (168) -+..|-|-=+|++.+..+++ .+.+++|+|||.|.-++.+|--.|.. .|+.+|..+.-+...++-++. .++ T Consensus 14 ~~~~~yR~~~DavLLAa~~~~~~~~rVLDlG~G~G~i~l~La~r~~~~---~v~gvEi~~~~~~lAr~N~~ln~~~~~~~ 90 (260) T 2ozv_A 14 RENLYFQGHMDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKA---EVTLYERSQEMAEFARRSLELPDNAAFSA 90 (260) T ss_dssp ---------CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTE---EEEEEESSHHHHHHHHHHTTSGGGTTTGG T ss_pred CCCCEECCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHHHCCCCC T ss_conf 876778775279999723688898999995436769999999858998---89999899999999999999865443323 Q ss_pred CCEEEECHHHH-----HHH--CCCCCCEEEEC----------------------CCCCHHHHHHHHHHHHCCC Q ss_conf 80998042665-----331--24798699991----------------------4799899999848852067 Q gi|254780807|r 124 RGKVFACRIQE-----APQ--MITTCDVISAR----------------------ALADLDTLLEYSFPWLYQK 167 (168) Q Consensus 124 ~~~vi~~r~e~-----~~~--~~~~~d~v~sR----------------------A~a~l~~ll~~~~pllk~k 167 (168) +.+++++.+.. ... ..++||+|++- ....+..+++.+..+||++ T Consensus 91 ri~~~~~Di~~~~~~~~~~~~~~~~fD~VvsNPPY~~~~~~~~~~~~~~~a~~~~~~~l~~~i~~a~~lLkpg 163 (260) T 2ozv_A 91 RIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG 163 (260) T ss_dssp GEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE T ss_pred CCEEEECHHHCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC T ss_conf 5358963321322123443313676267986698446665668776778877504688999999999972889 No 33 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=98.21 E-value=8.5e-06 Score=53.06 Aligned_cols=78 Identities=9% Similarity=0.134 Sum_probs=60.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH-HH-HCCCCCCEEEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665-33-12479869999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE-AP-QMITTCDVISA 147 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~-~~-~~~~~~d~v~s 147 (168) .+.+|+|+|+|.|- ++.++...+.. .|+.+|.++..+.+.++.++++|+++ +++++.+.+ ++ ...++||+|++ T Consensus 172 ~g~~vldlg~g~g~-~l~~~l~~~~~---~V~~vDi~~~~l~~a~~~a~~~g~~~i~~~~~d~~~~~~~~~~~~fD~v~~ 247 (373) T 2qm3_A 172 ENKDIFVLGDDDLT-SIALMLSGLPK---RIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373) T ss_dssp TTCEEEEESCTTCH-HHHHHHHTCCS---EEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE T ss_pred CCCEEEEEECCCHH-HHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEE T ss_conf 89979999799249-99999976999---899997979999999999998199743998530866324540788898998 Q ss_pred CCCCC Q ss_conf 14799 Q gi|254780807|r 148 RALAD 152 (168) Q Consensus 148 RA~a~ 152 (168) -.--. T Consensus 248 dpp~~ 252 (373) T 2qm3_A 248 DPPET 252 (373) T ss_dssp CCCSS T ss_pred CCCCC T ss_conf 99986 No 34 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Probab=98.21 E-value=8e-06 Score=53.20 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=63.4 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH-CCCCC Q ss_conf 3100123443111114677335656522755466347875000038999999999738980-998042665331-24798 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ-MITTC 142 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~-~~~~~ 142 (168) +.++++++..|+|+|+|.|.-++.|| .|. .+|+.+|-++..+...++-+++.++++ +++++..+++.. ....+ T Consensus 16 l~~~l~~~~~VLD~gcG~G~~t~~LA--~~~---~~V~aiDis~~al~~a~~n~~~~~l~nv~~~~~~~~~l~~~~~~~~ 90 (185) T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLA--GLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPI 90 (185) T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHH--TTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCE T ss_pred HHHHCCCCCEEEEEEEECCHHHHHHH--HCC---CEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCC T ss_conf 99658999999999638889999998--269---9899758987888789999998299848999936777555135666 Q ss_pred CEEEECC Q ss_conf 6999914 Q gi|254780807|r 143 DVISARA 149 (168) Q Consensus 143 d~v~sRA 149 (168) |.++... T Consensus 91 ~~v~~~~ 97 (185) T 3mti_A 91 RAAIFNL 97 (185) T ss_dssp EEEEEEE T ss_pred CEEEEEC T ss_conf 5699952 No 35 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Probab=98.19 E-value=1.4e-05 Score=51.83 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=73.5 Q ss_pred HHHHHHHHHHH--HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH Q ss_conf 98646356431--0012344311111467733565652275546634787500003899999999973898099804266 Q gi|254780807|r 56 IRHVEDSLRVF--QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ 133 (168) Q Consensus 56 ~rHi~DSl~~~--~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e 133 (168) .+..++.+.-. .....+++|+|+|+|.|.-++.++-.. ..++.+|.+..-+...++.....++++.++..... T Consensus 216 s~~ll~~l~~~~~~~~~~g~~VLDlGcG~G~~~~~la~~~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~ 290 (381) T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-----AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD 290 (381) T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-----CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHCC-----CEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 9999998787526668999989999601048889767519-----88741469999999999999982997388530100 Q ss_pred HHHHCCCCCCEEEECCCC---------CHHHHHHHHHHHHCC Q ss_conf 533124798699991479---------989999984885206 Q gi|254780807|r 134 EAPQMITTCDVISARALA---------DLDTLLEYSFPWLYQ 166 (168) Q Consensus 134 ~~~~~~~~~d~v~sRA~a---------~l~~ll~~~~pllk~ 166 (168) +......+||+|++-..- ....+++-+...||+ T Consensus 291 ~~~~~~~~fD~Iv~n~~~h~~~~~~~~~~~~~l~~~~~~Lkp 332 (381) T 3dmg_A 291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP 332 (381) T ss_dssp TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE T ss_pred CCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHCCC T ss_conf 144667986899989324533436889999999999987584 No 36 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=98.19 E-value=4.5e-06 Score=54.66 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=64.2 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168) ++.+.+++|||||.|.-...+|-.... ...|+.+|.....+...++..++++++| +++++.+.+......+||.|++ T Consensus 73 l~~g~~VLeIGtGtGy~aa~la~~~~~--~~~V~~iE~~~~l~~~A~~~l~~~g~~nv~~~~gD~~~g~~~~~~fD~Iiv 150 (317) T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGE--KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV 150 (317) T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCEEEE T ss_conf 999998999179764768999886188--867999957817899999989973578739998955758877899419999 Q ss_pred CCCC Q ss_conf 1479 Q gi|254780807|r 148 RALA 151 (168) Q Consensus 148 RA~a 151 (168) -|.. T Consensus 151 ~~~~ 154 (317) T 1dl5_A 151 TVGV 154 (317) T ss_dssp CSBB T ss_pred CCCH T ss_conf 6876 No 37 >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Probab=98.19 E-value=7.9e-06 Score=53.25 Aligned_cols=99 Identities=15% Similarity=-0.005 Sum_probs=69.7 Q ss_pred HHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCC Q ss_conf 4310012344311111467733565652275546634787500003899999999973898--09980426653312479 Q gi|254780807|r 64 RVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITT 141 (168) Q Consensus 64 ~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~ 141 (168) .++.+++.+.+++|||||.|.=++.++--.|. .+|+.+|-++.-....++-+++.++. ++++++.+.+....... T Consensus 8 ~i~~~v~~g~~ilDiG~g~G~~~~~l~~~~~~---~~v~avDi~~~~l~~a~~n~~~~~l~~~i~~~~~D~~~~~~~~~~ 84 (225) T 3kr9_A 8 LVASFVSQGAILLDVGSDHAYLPIELVERGQI---KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQ 84 (225) T ss_dssp HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSE---EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC T ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCC T ss_conf 99955899898999618569999999980999---889971099999999999999829998779998874132203466 Q ss_pred CCEEEECCCCCH--HHHHHHHHHHHC Q ss_conf 869999147998--999998488520 Q gi|254780807|r 142 CDVISARALADL--DTLLEYSFPWLY 165 (168) Q Consensus 142 ~d~v~sRA~a~l--~~ll~~~~pllk 165 (168) ||.++...++.. ..+++-....++ T Consensus 85 ~d~iviag~g~~~i~~il~~~~~~l~ 110 (225) T 3kr9_A 85 VSVITIAGMGGRLIARILEEGLGKLA 110 (225) T ss_dssp CCEEEEEEECHHHHHHHHHHTGGGCT T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHCC T ss_conf 77210538778999999998899718 No 38 >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Probab=98.18 E-value=1.6e-05 Score=51.46 Aligned_cols=94 Identities=14% Similarity=0.008 Sum_probs=70.7 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-C-EEEECHHHHHHHCCCCCCEEE Q ss_conf 12344311111467733565652275546634787500003899999999973898-0-998042665331247986999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-G-KVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~-~vi~~r~e~~~~~~~~~d~v~ 146 (168) ++.+.+|+|+|+|.|...+.++-.. +.+|+.+|.++.-+...+......+.. + ......+++++...++||+|+ T Consensus 59 l~~g~~VLDiGcG~G~~~~~~~~~~----~~~v~gvD~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fD~v~ 134 (273) T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR----DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVW 134 (273) T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEE T ss_conf 8997989997897998899999845----988999978488899999999871777321001344346887777624898 Q ss_pred ECCC----CCHHHHHHHHHHHHCC Q ss_conf 9147----9989999984885206 Q gi|254780807|r 147 ARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~----a~l~~ll~~~~pllk~ 166 (168) |.-+ .....++.-....||+ T Consensus 135 ~~~~l~h~~d~~~~l~~~~r~Lkp 158 (273) T 3bus_A 135 ALESLHHMPDRGRALREMARVLRP 158 (273) T ss_dssp EESCTTTSSCHHHHHHHHHTTEEE T ss_pred ECCCEEECCCHHHHHHHHHHHCCC T ss_conf 646265066499999999986599 No 39 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Probab=98.18 E-value=6.8e-06 Score=53.61 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=68.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) ++++|+|+|+|.|.-.+.||= + +..|+.+|.+..-+...++.....+++..+....+++.+ ..++||+|+|..+ T Consensus 120 ~~~~vLDiGcG~G~~~~~la~--~---g~~v~gvD~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~I~~~~~ 193 (286) T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSL--L---GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-IQENYDFIVSTVV 193 (286) T ss_dssp CSCEEEEESCTTCHHHHHHHH--T---TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-CCSCEEEEEECSS T ss_pred CCCEEEEECCCCCHHHHHHHH--C---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECHHHHHC-CCCCCCEEEEEEE T ss_conf 969799983779899999985--8---997999989889999999865422662024440022110-1356757878607 Q ss_pred CC------HHHHHHHHHHHHCC Q ss_conf 99------89999984885206 Q gi|254780807|r 151 AD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 151 a~------l~~ll~~~~pllk~ 166 (168) -. ...+++-....|++ T Consensus 194 l~~l~~~~~~~~l~~~~~~Lkp 215 (286) T 3m70_A 194 FMFLNRERVPSIIKNMKEHTNV 215 (286) T ss_dssp GGGSCGGGHHHHHHHHHHTEEE T ss_pred EECCCHHHHHHHHHHHHHHCCC T ss_conf 7638878999999999997298 No 40 >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} Probab=98.17 E-value=7.3e-06 Score=53.44 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=72.5 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCC Q ss_conf 10012344311111467733565652275546634787500003899999999973898--0998042665331247986 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCD 143 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d 143 (168) +.-.+.+.+|+|+|+|.|--.+.||=.. +.+|+.||.++.-+...++-..+.++. ++++.+.+++++-...+|| T Consensus 41 l~~l~~~~rVLDlGCG~G~~~~~La~~~----~~~v~gvD~S~~ml~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD 116 (257) T 3f4k_A 41 INELTDDAKIADIGCGTGGQTLFLADYV----KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELD 116 (257) T ss_dssp SCCCCTTCEEEEETCTTSHHHHHHHHHC----CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEE T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC T ss_conf 6079997979997177979999999866----997999968456778889877643210000111303887623688521 Q ss_pred EEEECCCC---CHHHHHHHHHHHHCC Q ss_conf 99991479---989999984885206 Q gi|254780807|r 144 VISARALA---DLDTLLEYSFPWLYQ 166 (168) Q Consensus 144 ~v~sRA~a---~l~~ll~~~~pllk~ 166 (168) +|+|..+. +.+..+.-....||+ T Consensus 117 ~V~~~~~l~~~~~~~~l~e~~rvLkp 142 (257) T 3f4k_A 117 LIWSEGAIYNIGFERGMNEWSKYLKK 142 (257) T ss_dssp EEEEESCSCCCCHHHHHHHHHTTEEE T ss_pred EEEEHHHHHHCCHHHHHHHHHHHCCC T ss_conf 89860547728989999999997085 No 41 >2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=98.16 E-value=2.1e-05 Score=50.83 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=69.8 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168) +..+..++|+|+|.|.-++.+|-. ..+|+.+|.++..+.-.++-.++.+++| +++++.+++.-. ..+||.++. T Consensus 33 l~~~~~VlDlg~G~G~~si~la~~-----~~~V~ave~~~~~i~~a~~n~~~~gv~nv~~i~g~a~~~l~-~~~~D~v~i 106 (183) T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKR-----CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLD-KLEFNKAFI 106 (183) T ss_dssp CCTTCEEEEESCCCSHHHHHHHTT-----SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGG-GCCCSEEEE T ss_pred CCCCCEEEEEECCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH-CCCCCEEEE T ss_conf 989499999617476999998873-----89999997989999999999997689987999464565640-699894998 Q ss_pred CCCCCHHHHHHHHHH Q ss_conf 147998999998488 Q gi|254780807|r 148 RALADLDTLLEYSFP 162 (168) Q Consensus 148 RA~a~l~~ll~~~~p 162 (168) =+-.++..+++...+ T Consensus 107 g~~~~~~~~l~~~~~ 121 (183) T 2yxd_A 107 GGTKNIEKIIEILDK 121 (183) T ss_dssp CSCSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCC T ss_conf 998709999998542 No 42 >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43 Probab=98.16 E-value=2e-05 Score=50.90 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEH Q ss_conf 99999999999984632130430899999898646356431001234431111146773356565227554663478750 Q gi|254780807|r 26 LEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIE 105 (168) Q Consensus 26 ~~~l~~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lve 105 (168) .+.+..|++.+..++. +. +-|...+.+.+.- ....+.+|+|+|+|.|--.++||=. +..++.+| T Consensus 3 Y~~~a~~Yd~l~~~~~--------~y-~~~~~~~~~~~~~--~~~~~~~iLDlGCGtG~~~~~l~~~-----g~~v~gvD 66 (246) T 1y8c_A 3 YNKFAHIYDKLIRADV--------DY-KKWSDFIIEKCVE--NNLVFDDYLDLACGTGNLTENLCPK-----FKNTWAVD 66 (246) T ss_dssp HHHHHHHHHHHTTCSC--------CH-HHHHHHHHHHHHT--TTCCTTEEEEETCTTSTTHHHHGGG-----SSEEEEEC T ss_pred HHHHHHHHHHHHCCCC--------CH-HHHHHHHHHHHHH--HCCCCCEEEEEECCCCHHHHHHHHC-----CCEEEEEE T ss_conf 7789999999842899--------88-9999999999997--3899892999807462999999974-----99599996 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC--CC---CCHHH---HHHHHHHHHCC Q ss_conf 0003899999999973898099804266533124798699991--47---99899---99984885206 Q gi|254780807|r 106 SKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR--AL---ADLDT---LLEYSFPWLYQ 166 (168) Q Consensus 106 s~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR--A~---a~l~~---ll~~~~pllk~ 166 (168) .++.-+...+.-....+++++++++.+.+++. .++||+|++= ++ .+.+. ++.-+...||+ T Consensus 67 ~S~~ml~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~~~~~l~~i~~~Lkp 134 (246) T 1y8c_A 67 LSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134 (246) T ss_dssp SCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEE T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHC-CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC T ss_conf 74999998763112234432223466777510-334122412102221368878999999999997499 No 43 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Probab=98.15 E-value=1.5e-05 Score=51.64 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=67.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +++.|+|||+|.|+-++..|=. ....|+.+|.+. .+...++.+++.++. ++++++++++++....+||+|+|- T Consensus 38 ~~~~VLDiGcGtG~ls~~aa~~----Ga~~V~a~d~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~D~vvse 112 (328) T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH----GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE 112 (328) T ss_dssp TTCEEEEETCTTSHHHHHHHHT----CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC T ss_pred CCCEEEEECCCCCHHHHHHHHC----CCCEEEEEECHH-HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEEEEE T ss_conf 9799999789977999999971----999899995979-99999999987387623899971210055776664299997 Q ss_pred CC-------CCHHHHHHHHHHHHCC Q ss_conf 47-------9989999984885206 Q gi|254780807|r 149 AL-------ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~-------a~l~~ll~~~~pllk~ 166 (168) -+ ..+..++....++|++ T Consensus 113 ~~~~~~~~e~~~~~~~~a~~~~Lkp 137 (328) T 1g6q_1 113 WMGYFLLYESMMDTVLYARDHYLVE 137 (328) T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEE T ss_pred ECCEECCCCCHHHHHHHHHHHCCCC T ss_conf 3320304652106789998713488 No 44 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Probab=98.15 E-value=1.6e-05 Score=51.50 Aligned_cols=95 Identities=12% Similarity=0.210 Sum_probs=77.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC---CEEEECHHHH-HHHC-CCCCCE Q ss_conf 2344311111467733565652275546634787500003899999999973898---0998042665-3312-479869 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR---GKVFACRIQE-APQM-ITTCDV 144 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~---~~vi~~r~e~-~~~~-~~~~d~ 144 (168) ..+.+++++|||+|.=++-+|-..|. .++++-||.....+...++..++.|+. ++++.+++.+ ++.. .++||+ T Consensus 55 ~~~~~vlEiGt~~G~stl~la~al~~--~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~L~~l~~~~fDl 132 (221) T 3dr5_A 55 NGSTGAIAITPAAGLVGLYILNGLAD--NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQL 132 (221) T ss_dssp TTCCEEEEESTTHHHHHHHHHHHSCT--TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCE T ss_conf 38998999728057999999984799--9789999899999999999999668876246773277899878743478777 Q ss_pred EEECCC-CCHHHHHHHHHHHHCC Q ss_conf 999147-9989999984885206 Q gi|254780807|r 145 ISARAL-ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~-a~l~~ll~~~~pllk~ 166 (168) |+.-|- ......++.+.++|++ T Consensus 133 VfiD~~k~~y~~~~~~~~~lLkp 155 (221) T 3dr5_A 133 VFGQVSPMDLKALVDAAWPLLRR 155 (221) T ss_dssp EEECCCTTTHHHHHHHHHHHEEE T ss_pred EEECCCHHHHHHHHHHHHHHCCC T ss_conf 99758867718999998632558 No 45 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Probab=98.15 E-value=9.9e-06 Score=52.68 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=58.4 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) .++.|+|||+|.|+-++-.|-+- ..+|+.+|.+. -+...++.++..++. ++++++++|++. ..+++|+|+|- T Consensus 158 ~~kvVLDvGcGtGiLs~~AA~aG----A~kV~avE~S~-~a~~A~~~v~~Ngl~d~I~vi~g~~e~l~-lpe~vDvIVSE 231 (480) T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAG----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISE 231 (480) T ss_dssp TTCEEEEESCSTTHHHHHHHHTT----CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEECC T ss_pred CCCEEEEECCCCCHHHHHHHHCC----CCEEEEECCHH-HHHHHHHHHHHCCCCCCEEEEECCHHHCC-CCCCCCEEEEE T ss_conf 98989996888369999999859----98899990959-99999999997499861689975276567-67666789998 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) -+. T Consensus 232 ~mg 234 (480) T 3b3j_A 232 PMG 234 (480) T ss_dssp CCH T ss_pred CCC T ss_conf 322 No 46 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Probab=98.11 E-value=6.4e-06 Score=53.76 Aligned_cols=93 Identities=13% Similarity=0.001 Sum_probs=65.9 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEECHHHHHHHCCCCCCE Q ss_conf 100123443111114677335656522755466347875000038999999999738-9809980426653312479869 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA-ARGKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-L~~~vi~~r~e~~~~~~~~~d~ 144 (168) ..+++++.+|+|+|+|.|.-...||=. +..|+.+|.+..-+...+ ++.. .+.+.+++.+++++-..++||+ T Consensus 48 ~~~l~~~~~VLDiGcG~G~~~~~l~~~-----~~~v~giD~s~~~l~~a~---~~~~~~~~~~~~~~~~~l~~~~~~fD~ 119 (242) T 3l8d_A 48 EQYVKKEAEVLDVGCGDGYGTYKLSRT-----GYKAVGVDISEVMIQKGK---ERGEGPDLSFIKGDLSSLPFENEQFEA 119 (242) T ss_dssp HHHSCTTCEEEEETCTTSHHHHHHHHT-----TCEEEEEESCHHHHHHHH---TTTCBTTEEEEECBTTBCSSCTTCEEE T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 985899697999658885999999964-----998999979746679987---503444222223443567888785689 Q ss_pred EEECCC----CCHHHHHHHHHHHHCC Q ss_conf 999147----9989999984885206 Q gi|254780807|r 145 ISARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~----a~l~~ll~~~~pllk~ 166 (168) |+|+.+ .++..+++-....||+ T Consensus 120 i~~~~~l~hi~d~~~~l~~~~r~Lkp 145 (242) T 3l8d_A 120 IMAINSLEWTEEPLRALNEIKRVLKS 145 (242) T ss_dssp EEEESCTTSSSCHHHHHHHHHHHEEE T ss_pred EEEECHHHHCCCHHHHHHHHHHHCCC T ss_conf 85500288447999999999998584 No 47 >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Probab=98.10 E-value=1.1e-05 Score=52.46 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=61.1 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 01234431111146773356565227554663478750000389999999997389809980426653312479869999 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) +...+.+++|+|+|.|.-++.++-. +.+|+.+|-.+.-+...++-++..++++.++.+..++... .++||+|+| T Consensus 117 ~~~~g~~VLDvGcGsGiLsi~aak~-----G~~V~aiDid~~av~~a~~N~~~N~v~~~~~~~~~~~~~~-~~~fDlIva 190 (254) T 2nxc_A 117 HLRPGDKVLDLGTGSGVLAIAAEKL-----GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP-FGPFDLLVA 190 (254) T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHT-----TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG-GCCEEEEEE T ss_pred HCCCCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCCC-CCCCCEEEE T ss_conf 1799798999717778889999845-----9989999887278899999899709944999874345164-578668999 Q ss_pred CCCC Q ss_conf 1479 Q gi|254780807|r 148 RALA 151 (168) Q Consensus 148 RA~a 151 (168) -.++ T Consensus 191 Ni~~ 194 (254) T 2nxc_A 191 NLYA 194 (254) T ss_dssp ECCH T ss_pred EEEH T ss_conf 8100 No 48 >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp} Probab=98.10 E-value=4.9e-06 Score=54.45 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=56.9 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEE Q ss_conf 0123443111114677335656522755466347875000038999999999738980-998042665331247986999 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~ 146 (168) ....+.+|+|+|+|.|.-++-+|-..+ ..|+.+|-+..-+...++-++..++.+ ......... ...++||+|+ T Consensus 57 ~~~~~~~VLDlGcGsG~~~~~~ak~g~----~~V~~iDis~~al~~A~~N~~~n~~~~~~~~~~~~~~--~~~~~fD~Iv 130 (205) T 3grz_A 57 AMVKPLTVADVGTGSGILAIAAHKLGA----KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIV 130 (205) T ss_dssp HCSSCCEEEEETCTTSHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEE T ss_pred CCCCCCEEEEEECCHHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHH--CCCCCCCEEE T ss_conf 479959999995262299999987599----6899998989999999999997376676887343444--0455568999 Q ss_pred ECCC Q ss_conf 9147 Q gi|254780807|r 147 ARAL 150 (168) Q Consensus 147 sRA~ 150 (168) |--+ T Consensus 131 ani~ 134 (205) T 3grz_A 131 ANIL 134 (205) T ss_dssp EESC T ss_pred ECCC T ss_conf 8587 No 49 >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Probab=98.07 E-value=3.5e-05 Score=49.51 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=79.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHH-HH------CCC Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653-31------247 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEA-PQ------MIT 140 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~-~~------~~~ 140 (168) .++++++.|||+.|+=++-+|...|+ .+.++.+|.....+.+-+...++.++. ++++.+++.+. ++ ... T Consensus 78 ~~ak~iLEIGT~~GySal~~a~al~~--~g~l~tie~~~~~~~~Ar~~~~~ag~~~kI~~~~g~A~e~L~~l~~~~~~~~ 155 (247) T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPE--DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247) T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCT--TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCC--CCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCC T ss_conf 49977999632158999999985854--6369998517787899999998620145058994428999999985313477 Q ss_pred CCCEEEECC-CCCHHHHHHHHHHHHCCC Q ss_conf 986999914-799899999848852067 Q gi|254780807|r 141 TCDVISARA-LADLDTLLEYSFPWLYQK 167 (168) Q Consensus 141 ~~d~v~sRA-~a~l~~ll~~~~pllk~k 167 (168) .||+|..-| -......++.+.++|++. T Consensus 156 ~fDfIFIDadK~~Y~~y~e~~~~LLr~G 183 (247) T 1sui_A 156 SYDFIFVDADKDNYLNYHKRLIDLVKVG 183 (247) T ss_dssp CBSEEEECSCSTTHHHHHHHHHHHBCTT T ss_pred CCCEEEECCCHHHHHHHHHHHHHHCCCC T ss_conf 6447996388888899999997344798 No 50 >2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44 Probab=98.07 E-value=2.6e-05 Score=50.28 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=73.6 Q ss_pred HHHHHHHHHHH------HHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC Q ss_conf 99998986463------564310012344311111467733565652275546634787500003899999999973898 Q gi|254780807|r 51 VEDFWIRHVED------SLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR 124 (168) Q Consensus 51 ~~~~~~rHi~D------Sl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~ 124 (168) .++.|.+|..- .+.....+. +++++|||+|.|.=.+.+|=. +..|+.+|.+..-+...+....+.+++ T Consensus 6 ~~~~~~~~y~~~~~~~~~~~~~~~l~-pgrVLDiGcG~G~~~~~la~~-----g~~v~gvD~s~~~l~~a~~~~~~~~~~ 79 (199) T 2i6g_A 6 DENYFTEXYGLTRTHSDVLAAAXVVA-PGRTLDLGCGNGRNSLYLAAN-----GYDVTAWDXNPASMANLERIXAAEGLD 79 (199) T ss_dssp SHHHHHHHHCBCCCCHHHHHHHTTSC-SCEEEEETCTTSHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHHHTTCT T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCC-CCCEEEECCCCCHHHHHHHHC-----CCEEEEEECCCHHHHHHHHHHHHCCCC T ss_conf 77876652377853899999843789-896899858897899999854-----998999958718999999864213764 Q ss_pred C-EEEECHHHHHHHCCCCCCEEEECCCCC------HHHHHHHHHHHHCC Q ss_conf 0-998042665331247986999914799------89999984885206 Q gi|254780807|r 125 G-KVFACRIQEAPQMITTCDVISARALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 125 ~-~vi~~r~e~~~~~~~~~d~v~sRA~a~------l~~ll~~~~pllk~ 166 (168) + +......+..+. ..+||+|++..+-. ...++.-....|++ T Consensus 80 ~~~~~~~d~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L~p 127 (199) T 2i6g_A 80 NLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTXP 127 (199) T ss_dssp TEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEE T ss_pred CHHHHHEECCCCCC-CCCEEEEEECCCHHCCCHHHHHHHHHHHHHHCCC T ss_conf 10010000002466-8753199981214509988999999999998387 No 51 >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Probab=98.06 E-value=1.1e-05 Score=52.46 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=61.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC Q ss_conf 23443111114677335656522755466347875000038999999999738980-99804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ..+.+++|||||.|+-..++|-+. +..|+.+|..+.-+.+.++..+++++.| +++++.+.+......+||.|.+- T Consensus 90 ~~g~~VLeIGsGtGy~ta~la~l~----g~~V~~IE~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~~fD~I~v~ 165 (235) T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIV----KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVT 165 (235) T ss_dssp CTTCCEEEECCTTSHHHHHHHHHH----CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC T ss_pred CCCCEEEEECCCCCHHHHHHHHHC----CCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEE T ss_conf 999879994788767899999864----9739999628899999999999809971699988700166655763436761 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) |-. T Consensus 166 ~a~ 168 (235) T 1jg1_A 166 AGA 168 (235) T ss_dssp SBB T ss_pred CCH T ss_conf 465 No 52 >2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46 Probab=98.06 E-value=1.1e-05 Score=52.34 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=60.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHH-HHCCCCCCEEEE Q ss_conf 3443111114677335656522755466347875000038999999999738980--9980426653-312479869999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEA-PQMITTCDVISA 147 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~-~~~~~~~d~v~s 147 (168) ++++|+|+|+|.|.-|+..+-- ...+|+.+|.+..-+..+++.+..+++++ +++++.+.++ .....+||+|++ T Consensus 31 ~g~~vLDl~~GsG~~~iea~~r----~a~~v~~ve~~~~a~~~~~~n~~~~~~~~~v~ii~~D~~~~l~~~~~~fDiI~~ 106 (177) T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR----GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL 106 (177) T ss_dssp CSCEEEEETCTTCHHHHHHHHT----TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE T ss_pred CCCEEEECCEEHHHHHHHHHHC----CCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEE T ss_conf 9897999950379999999973----862016783428899988875765135551024531155554313467886887 Q ss_pred C Q ss_conf 1 Q gi|254780807|r 148 R 148 (168) Q Consensus 148 R 148 (168) = T Consensus 107 D 107 (177) T 2esr_A 107 D 107 (177) T ss_dssp C T ss_pred C T ss_conf 9 No 53 >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Probab=98.05 E-value=8.4e-06 Score=53.10 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=64.1 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECH-HHHHHHCCCCCC Q ss_conf 3100123443111114677335656522755466347875000038999999999738980998042-665331247986 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACR-IQEAPQMITTCD 143 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r-~e~~~~~~~~~d 143 (168) ++..++.+.+|+|+|+|.|.-.+.++=..|+.+ |+.+|-++.-+.+.++-....++.+.+.... ....+ ..+|| T Consensus 43 i~~~~~~~~~VLDiGCG~G~~~~~la~~~p~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~fD 117 (200) T 3fzg_A 43 VFGNIKHVSSILDFGCGFNPLALYQWNENEKII---YHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVY--KGTYD 117 (200) T ss_dssp HHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCE---EEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHT--TSEEE T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHCC--CCCCC T ss_conf 995289998799958867877999998789978---9998599999999985102328851566510133344--78969 Q ss_pred EEEECCC Q ss_conf 9999147 Q gi|254780807|r 144 VISARAL 150 (168) Q Consensus 144 ~v~sRA~ 150 (168) +|++..+ T Consensus 118 ~i~~~~~ 124 (200) T 3fzg_A 118 VVFLLKM 124 (200) T ss_dssp EEEEETC T ss_pred EEEECCC T ss_conf 8987383 No 54 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Probab=97.99 E-value=3.2e-05 Score=49.75 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=66.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) .+.+|+|+|+|.|.-...++ .+ +..|+.+|.+..-+...++-...++.+++++.+.+|+++-..+.||.|+|..+ T Consensus 39 ~~~~vLDiGcG~G~~t~~la--~~---~~~V~gvD~S~~~l~~a~~r~~~~~~~v~~~~~da~~l~~~~~sfD~V~~~~~ 113 (263) T 2yqz_A 39 EEPVFLELGVGTGRIALPLI--AR---GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL 113 (263) T ss_dssp SCCEEEEETCTTSTTHHHHH--TT---TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC T ss_pred CCCEEEEECCCCCHHHHHHH--HC---CCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCH T ss_conf 99989995178869999999--66---99899998989999998740210114410222012223466761047875122 Q ss_pred ----CCHHHHHHHHHHHHCC Q ss_conf ----9989999984885206 Q gi|254780807|r 151 ----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 151 ----a~l~~ll~~~~pllk~ 166 (168) ......++-....||+ T Consensus 114 l~~~~d~~~~l~e~~r~LkP 133 (263) T 2yqz_A 114 WHLVPDWPKVLAEAIRVLKP 133 (263) T ss_dssp GGGCTTHHHHHHHHHHHEEE T ss_pred HHHCCCHHHHHHHHHHHCCC T ss_conf 77558999999999998580 No 55 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Probab=97.99 E-value=2.6e-05 Score=50.23 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=64.7 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 34431111146773356565227554663478750000389999999997389-80998042665331247986999914 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ++.+|+|||+|.|..+..++=..+ ..|+.+|-++.-+...+ ++..- +...++..+++++-..+.||+|+|.. T Consensus 44 ~g~~VLDiGcG~G~~~~~l~~~g~----~~v~giD~S~~~i~~a~---~~~~~~~~~~~~~d~~~l~~~~~~fD~V~~~~ 116 (253) T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGA----KKVLGIDLSERMLTEAK---RKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL 116 (253) T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC----SEEEEEESCHHHHHHHH---HHCCCTTEEEEECCGGGCCCCTTCEEEEEEES T ss_pred CCCEEEEECCCCCHHHHHHHHCCC----CEEEEEECCCHHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 969899983778499999996499----98999948506568998---74034443222222245665675555342111 Q ss_pred C----CCHHHHHHHHHHHHCC Q ss_conf 7----9989999984885206 Q gi|254780807|r 150 L----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 150 ~----a~l~~ll~~~~pllk~ 166 (168) + ..+..+++-....||+ T Consensus 117 ~l~~~~d~~~~l~~i~r~Lkp 137 (253) T 3g5l_A 117 ALHYIASFDDICKKVYINLKS 137 (253) T ss_dssp CGGGCSCHHHHHHHHHHHEEE T ss_pred EEEECCCHHHHHHHHHHHCCC T ss_conf 133148999999999997488 No 56 >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32 Probab=97.98 E-value=3e-05 Score=49.86 Aligned_cols=102 Identities=16% Similarity=0.048 Sum_probs=70.4 Q ss_pred HCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH Q ss_conf 46321304308999998986463564310012344311111467733565652275546634787500003899999999 Q gi|254780807|r 39 WSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVV 118 (168) Q Consensus 39 ~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~ 118 (168) ++.+..|=-..|..++..+ ++--.....-+ .+.+++|+|+|.|.-|+-++-. ....|+.+|-..+.+.++++-. T Consensus 19 ~~p~~~l~q~~Tp~~ia~~-~~~~a~~~~dl-~g~~vlDlg~G~G~l~i~a~~~----g~~~v~~vDid~~~~~~a~~N~ 92 (207) T 1wy7_A 19 KNPKVWLEQYRTPGNAASE-LLWLAYSLGDI-EGKVVADLGAGTGVLSYGALLL----GAKEVICVEVDKEAVDVLIENL 92 (207) T ss_dssp SSCCGGGTCCCCCHHHHHH-HHHHHHHTTSS-TTCEEEEETCTTCHHHHHHHHT----TCSEEEEEESCHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCHHHHHH-HHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHH T ss_conf 9997351137999999999-99999864987-9898999134256999999974----9986999879899999999999 Q ss_pred HHHCCCCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 9738980998042665331247986999914 Q gi|254780807|r 119 QKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 119 ~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ..+++++.++.+.++++ ..+||+|++-. T Consensus 93 ~~~~~~~~~~~~d~~~~---~~~~D~ii~np 120 (207) T 1wy7_A 93 GEFKGKFKVFIGDVSEF---NSRVDIVIMNP 120 (207) T ss_dssp GGGTTSEEEEESCGGGC---CCCCSEEEECC T ss_pred HHCCCCCEEEECCHHHH---HCCCCEEECCC T ss_conf 98399827997667886---14654644488 No 57 >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Probab=97.98 E-value=1.6e-05 Score=51.53 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=63.7 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEE Q ss_conf 00123443111114677335656522755466347875000038999999999738980998042665331247986999 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168) ..++.+.+|+|+|+|.|.-.++++-..|+. .|+.+|-+..-+.+.++-...++.++......+.... ...+||+|+ T Consensus 128 ~~~~~~~~vlD~GcG~G~~~~~l~~~~~~~---~v~g~D~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 203 (281) T 3lcv_B 128 RHLPRPNTLRDLACGLNPLAAPWMGLPAET---VYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTL 203 (281) T ss_dssp GGSCCCSEEEETTCTTGGGCCTTTTCCTTC---EEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEE T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHC-CCCCCCEEE T ss_conf 648999869983898888999999749977---4999659999999999999866887389981354407-655656776 Q ss_pred ECCC Q ss_conf 9147 Q gi|254780807|r 147 ARAL 150 (168) Q Consensus 147 sRA~ 150 (168) +-.+ T Consensus 204 ~~~v 207 (281) T 3lcv_B 204 LLKT 207 (281) T ss_dssp ETTC T ss_pred EHHH T ss_conf 5344 No 58 >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Probab=97.97 E-value=2.3e-05 Score=50.51 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=67.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 2344311111467733565652275546634787500003899999999973898-099804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +...+++|+|+|.|-....++--. ...|+.+|.++.-+...++-....+.. ++++++.+++++....+||+|++. T Consensus 78 ~~~~~vLDiGcG~G~~~~~ll~~~----~~~v~~vD~s~~~l~~ar~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~I~~~ 153 (241) T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL----FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ 153 (241) T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT----CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCEEEEC T ss_conf 788769990157078699999705----9989999999999999998776504663489957888715775783189964 Q ss_pred CCCC------HHHHHHHHHHHHCC Q ss_conf 4799------89999984885206 Q gi|254780807|r 149 ALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~------l~~ll~~~~pllk~ 166 (168) .+-. +..+++-+...||+ T Consensus 154 ~vl~hl~d~~~~~~l~~~~~~Lkp 177 (241) T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRP 177 (241) T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEE T ss_pred CCHHCCCCHHHHHHHHHHHHHCCC T ss_conf 651047567889999999983199 No 59 >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42 Probab=97.96 E-value=1.7e-05 Score=51.33 Aligned_cols=89 Identities=18% Similarity=0.056 Sum_probs=60.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389-80-99804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|+|+|.|.....++.-.. ..|++||.+..-+.. +.+.+.- .+ ..++..++++.....+||+|++. T Consensus 93 ~~~~vLDiGcG~G~~t~~ll~~~~----~~V~~vD~s~~~l~~---a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~ 165 (254) T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY----ATTDLLEPVKHMLEE---AKRELAGMPVGKFILASMETATLPPNTYDLIVIQ 165 (254) T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC----SEEEEEESCHHHHHH---HHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCC----CEEEEEECCHHHHHH---HHHCCCCCCEEEEEECCHHHCCCCCCCCCEEEEE T ss_conf 897389966788599999998639----858999198899999---8640157742799977875688877763467642 Q ss_pred CCCC------HHHHHHHHHHHHCC Q ss_conf 4799------89999984885206 Q gi|254780807|r 149 ALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~------l~~ll~~~~pllk~ 166 (168) .+.. +..+++-+...|++ T Consensus 166 ~~l~hl~d~~~~~~l~~~~~~Lkp 189 (254) T 1xtp_A 166 WTAIYLTDADFVKFFKHCQQALTP 189 (254) T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEE T ss_pred EEHHCCCHHHHHHHHHHHHHHCCC T ss_conf 110047614578999999998189 No 60 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Probab=97.96 E-value=3e-05 Score=49.91 Aligned_cols=74 Identities=15% Similarity=0.026 Sum_probs=61.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEE Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~s 147 (168) ..+.+++|+|+|.|--++.+|-. +..|+.||.+...+...++-++..++. ++++++.+.++.. ..+||+|++ T Consensus 77 ~~~~~vlD~gcG~G~~~~~la~~-----~~~v~~iD~s~~~i~~a~~n~~~~~~~~~i~~~~~D~~~~~~-~~~~D~i~~ 150 (241) T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT-----GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-FLKADVVFL 150 (241) T ss_dssp SCCSEEEETTCTTSHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-GCCCSEEEE T ss_pred CCCCEEEECCCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH-CCCCEEEEE T ss_conf 89998999378736889999967-----998999989778889999999984998743999764866414-378449998 Q ss_pred CC Q ss_conf 14 Q gi|254780807|r 148 RA 149 (168) Q Consensus 148 RA 149 (168) -. T Consensus 151 ~p 152 (241) T 3gdh_A 151 SP 152 (241) T ss_dssp CC T ss_pred CC T ss_conf 37 No 61 >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} Probab=97.96 E-value=2.5e-05 Score=50.40 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=63.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC Q ss_conf 23443111114677335656522755466347875000038999999999738980-99804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ..+.+++|||||.|+-.-++|-+-.+ ...|+.+|..+.-+.+.++...+++.+| .++++...+......+||.|..- T Consensus 76 ~~g~~VLeIGtGsGY~ta~la~l~g~--~g~V~~iE~~~~l~~~a~~~l~~~~~~nv~~~~gd~~~g~~~~~~fD~I~v~ 153 (215) T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGE--DGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215) T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEE T ss_conf 99988998278841999999998488--8718999528899999999998615664499988865575346886489994 Q ss_pred CCCC Q ss_conf 4799 Q gi|254780807|r 149 ALAD 152 (168) Q Consensus 149 A~a~ 152 (168) |-.+ T Consensus 154 ~~~~ 157 (215) T 2yxe_A 154 AAGP 157 (215) T ss_dssp SBBS T ss_pred CCCH T ss_conf 5610 No 62 >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Probab=97.94 E-value=8.3e-05 Score=47.33 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=76.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHH-HHH-----CCCC Q ss_conf 2344311111467733565652275546634787500003899999999973898--0998042665-331-----2479 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQE-APQ-----MITT 141 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~-~~~-----~~~~ 141 (168) -+.++++.||||.|+=++-+|-..|+ .++++.+|...+.+.+-+...++.++. ++++.+.+.+ +++ ...+ T Consensus 68 ~~~k~vLEiGt~~GySal~lA~al~~--~g~v~tie~~~~~~~~Ar~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~ 145 (229) T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPA--DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229) T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCT--TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC T ss_pred HCCCEEEEEECCCCHHHHHHHHCCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCC T ss_conf 49978999844468999999943799--9789999574659999999999769988569999500456777764135777 Q ss_pred CCEEEECCC-CCHHHHHHHHHHHHCC Q ss_conf 869999147-9989999984885206 Q gi|254780807|r 142 CDVISARAL-ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 142 ~d~v~sRA~-a~l~~ll~~~~pllk~ 166 (168) ||+|..-|- ......++++.++|++ T Consensus 146 fD~iFiDa~k~~y~~~~~~~~~lL~~ 171 (229) T 2avd_A 146 FDVAVVDADKENCSAYYERCLQLLRP 171 (229) T ss_dssp EEEEEECSCSTTHHHHHHHHHHHEEE T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 21899438877779999999965589 No 63 >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Probab=97.93 E-value=1.7e-05 Score=51.27 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=64.4 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEE Q ss_conf 00123443111114677335656522755466347875000038999999999738980998042665331247986999 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168) ....++.+|+|||+|.|.-...++=.+|.. .++.+|.++.-+...++-.. -+.++.++++.+++.+ ..++||+|+ T Consensus 40 ~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~---~v~giD~s~~~l~~A~~~~~-~~~~v~~~~~D~~~~~-~~~~fD~I~ 114 (234) T 3dtn_A 40 SVDTENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFR-GNLKVKYIEADYSKYD-FEEKYDMVV 114 (234) T ss_dssp CCSCSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTC-SCTTEEEEESCTTTCC-CCSCEEEEE T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHH-CCCCEEEEEEECCCCC-CCCCHHHHH T ss_conf 356999959998176859999999988996---89999585045789998630-2776247742001345-445513455 Q ss_pred ECCC----CCH--HHHHHHHHHHHCC Q ss_conf 9147----998--9999984885206 Q gi|254780807|r 147 ARAL----ADL--DTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~----a~l--~~ll~~~~pllk~ 166 (168) ++.+ .+. ..++.-+..+|++ T Consensus 115 ~~~~l~~l~~~~~~~~l~~~~~~Lkp 140 (234) T 3dtn_A 115 SALSIHHLEDEDKKELYKRSYSILKE 140 (234) T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 57778708938899879999976589 No 64 >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Probab=97.92 E-value=5e-05 Score=48.58 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=77.6 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHH-HH------CCC Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653-31------247 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEA-PQ------MIT 140 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~-~~------~~~ 140 (168) .++++++.||||.|+=++-+|-..|+ ++.++-+|.......+-++..++.|+. +.++.+.+.+. +. ... T Consensus 69 ~~~k~vLEiGT~~GyStl~la~al~~--~g~v~tie~~~~~~~~A~~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~ 146 (237) T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPD--DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237) T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCC--CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCC T ss_conf 39988999705257899999974899--8489999602676899999999849981389996220000178887403577 Q ss_pred CCCEEEECC-CCCHHHHHHHHHHHHCC Q ss_conf 986999914-79989999984885206 Q gi|254780807|r 141 TCDVISARA-LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 141 ~~d~v~sRA-~a~l~~ll~~~~pllk~ 166 (168) +||+|..-| -......++++.|+|++ T Consensus 147 ~fD~IFiDadk~~y~~y~e~~~~lL~~ 173 (237) T 3c3y_A 147 SYDFGFVDADKPNYIKYHERLMKLVKV 173 (237) T ss_dssp CEEEEEECSCGGGHHHHHHHHHHHEEE T ss_pred CCCEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 765899728888899999999865489 No 65 >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Probab=97.91 E-value=3.5e-05 Score=49.48 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=72.4 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCC Q ss_conf 10012344311111467733565652275546634787500003899999999973898--0998042665331247986 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCD 143 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d 143 (168) ...+..+.+++|+|+|.|.=++++|-. + ...|+.+|.++.-+.++++-++..++. ++++++.+.++.. ...|| T Consensus 120 ~~~~~~g~~VlDl~aG~G~~~l~~a~~-~---~~~V~avD~n~~a~~~~~~N~~~n~~~~~v~~~~~D~~~~~~-~~~~D 194 (278) T 2frn_A 120 AKVAKPDELVVDMFAGIGHLSLPIAVY-G---KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIAD 194 (278) T ss_dssp HHHCCTTCEEEETTCTTTTTHHHHHHH-T---CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEE T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHH-C---CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCC-CCCCC T ss_conf 965369988999177051999999997-4---986999979999999999999980999848999681999446-66886 Q ss_pred EEEECCCCCHHHHHHHHHHHHCC Q ss_conf 99991479989999984885206 Q gi|254780807|r 144 VISARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 144 ~v~sRA~a~l~~ll~~~~pllk~ 166 (168) .|+.=-......+++-+.++|++ T Consensus 195 ~Vim~~p~~~~~~l~~a~~~lk~ 217 (278) T 2frn_A 195 RILMGYVVRTHEFIPKALSIAKD 217 (278) T ss_dssp EEEECCCSSGGGGHHHHHHHEEE T ss_pred EEEECCCCCHHHHHHHHHHHCCC T ss_conf 99989985269999999996689 No 66 >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Probab=97.91 E-value=7e-05 Score=47.75 Aligned_cols=99 Identities=14% Similarity=-0.021 Sum_probs=65.7 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCC Q ss_conf 310012344311111467733565652275546634787500003899999999973898--099804266533124798 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTC 142 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~ 142 (168) ++.+++.+.+++|||||.|+=++-++-..+.. +|+.+|-++.-+...++-+++.++. ++++.+..-+.......+ T Consensus 15 ia~~v~~g~~vlDIG~g~G~l~i~l~~~~~~~---~viavDi~~~~l~~A~~n~~~~gl~~~I~~~~~Dgl~~~~~~e~~ 91 (230) T 3lec_A 15 VANYVPKGARLLDVGSDHAYLPIFLLQMGYCD---FAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI 91 (230) T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTCEE---EEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC T ss_conf 99658998999995286499999999839998---799930999999999999998399875799988754100455541 Q ss_pred C-EEEECCCCC-HHHHHHHHHHHHCC Q ss_conf 6-999914799-89999984885206 Q gi|254780807|r 143 D-VISARALAD-LDTLLEYSFPWLYQ 166 (168) Q Consensus 143 d-~v~sRA~a~-l~~ll~~~~pllk~ 166 (168) | +++|---+. +..+++-....++. T Consensus 92 d~iiiag~g~~~i~~Il~~~~~~l~~ 117 (230) T 3lec_A 92 DTITICGMGGRLIADILNNDIDKLQH 117 (230) T ss_dssp CEEEEEEECHHHHHHHHHHTGGGGTT T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCC T ss_conf 27864287588999999999986488 No 67 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Probab=97.90 E-value=4.3e-05 Score=49.00 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=66.8 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC---CCEEEECHHHHHHH------C Q ss_conf 123443111114677335656522-7554663478750000389999999997389---80998042665331------2 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAA---RGKVFACRIQEAPQ------M 138 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L---~~~vi~~r~e~~~~------~ 138 (168) ..++.+|+|||+|.|...+.||=. .|. .+|+.+|.++.-+...++...+.+. +++...+++|+... . T Consensus 34 ~~~~~~VLDiGCGtG~~t~~la~~~~~~---~~V~gvD~S~~mi~~a~~~~~~~~~~~~~v~~~~~dae~~~~~~~~~~~ 110 (299) T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299) T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCCCCCC T ss_conf 7899969998260889999999964999---8799985988999999999986366753246898337765442123466 Q ss_pred CCCCCEEEECCCCC---HHHHHHHHHHHHCC Q ss_conf 47986999914799---89999984885206 Q gi|254780807|r 139 ITTCDVISARALAD---LDTLLEYSFPWLYQ 166 (168) Q Consensus 139 ~~~~d~v~sRA~a~---l~~ll~~~~pllk~ 166 (168) .+.||+|+|..+-. .+..++-..+.||+ T Consensus 111 ~~~fD~V~~~~~~h~~d~~~~l~e~~r~Lkp 141 (299) T 3g5t_A 111 KQKIDMITAVECAHWFDFEKFQRSAYANLRK 141 (299) T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHEEE T ss_pred CCCCCEEEEECCEECCCHHHHHHHHHHHHHC T ss_conf 5565478870036315617899999999523 No 68 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Probab=97.89 E-value=8.3e-05 Score=47.34 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=66.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC-C Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533124798699991-4 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR-A 149 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR-A 149 (168) +..+|+|+|+|.|.-.+.++=. +..++.+|.+++-+...++-..+.+++.+++++.+++++. ..+||.|++- + T Consensus 41 ~~~~ILDiGcGtG~~~~~l~~~-----g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~d~~~l~~-~~~fD~V~~~~~ 114 (252) T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER-----GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFDAVTMFFS 114 (252) T ss_dssp CCCEEEEETCTTCHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC-CSCEEEEEECSS T ss_pred CCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCCC-CCCCCEEEEECC T ss_conf 9898999547586999999976-----9989999746889999999776428752368655420566-777548999615 Q ss_pred C---CC---HHHHHHHHHHHHCC Q ss_conf 7---99---89999984885206 Q gi|254780807|r 150 L---AD---LDTLLEYSFPWLYQ 166 (168) Q Consensus 150 ~---a~---l~~ll~~~~pllk~ 166 (168) + .+ +...+.-....|++ T Consensus 115 ~~~~~~~~~~~~~l~~~~~~Lkp 137 (252) T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALKP 137 (252) T ss_dssp GGGGSCHHHHHHHHHHHHHHEEE T ss_pred CHHCCCHHHHHHHHHHHHHHCCC T ss_conf 11128878999999999997697 No 69 >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=97.89 E-value=3.1e-05 Score=49.82 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=63.1 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEE Q ss_conf 10012344311111467733565652275546634787500003899999999973898099804266533124798699 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVI 145 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v 145 (168) -++.+.+.+|+|+|+|.|.-...+|=. +..|+.+|.++.-+...+ + -+.. .++++++++++-..++||+| T Consensus 49 ~~~~~~~~~VLDiGCGtG~~~~~la~~-----g~~v~giD~S~~ml~~Ak---~-~~~~-~~~~~~~~~l~~~~~~fD~I 118 (260) T 2avn_A 49 EEYLKNPCRVLDLGGGTGKWSLFLQER-----GFEVVLVDPSKEMLEVAR---E-KGVK-NVVEAKAEDLPFPSGAFEAV 118 (260) T ss_dssp HHHCCSCCEEEEETCTTCHHHHHHHTT-----TCEEEEEESCHHHHHHHH---H-HTCS-CEEECCTTSCCSCTTCEEEE T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECHHHHHHHHH---H-HCCC-CCCCCHHHHCCCCCCCCCHH T ss_conf 985799698999899998889999861-----998999935237889998---8-3632-20001575088864673565 Q ss_pred EEC--C---CCCHHHHHHHHHHHHCC Q ss_conf 991--4---79989999984885206 Q gi|254780807|r 146 SAR--A---LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sR--A---~a~l~~ll~~~~pllk~ 166 (168) +|- + +.++..++.-....||+ T Consensus 119 is~~~vl~hi~d~~~~l~~i~r~Lk~ 144 (260) T 2avn_A 119 LALGDVLSYVENKDKAFSEIRRVLVP 144 (260) T ss_dssp EECSSHHHHCSCHHHHHHHHHHHEEE T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCC T ss_conf 50577741677899999999997398 No 70 >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Probab=97.86 E-value=0.00012 Score=46.37 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=72.2 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH--CCCCCCEEEEC Q ss_conf 443111114677335656522755466347875000038999999999738980-998042665331--24798699991 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ--MITTCDVISAR 148 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~--~~~~~d~v~sR 148 (168) ...++|||+|.|---+-+|-.+|+.. ++.+|.+.+.+.....-+.+.+++| .++++.++++.+ ....+|.|..= T Consensus 39 ~p~vLEIGcG~G~~~~~lA~~~p~~~---~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~da~~l~~~~~~~~~d~v~i~ 115 (213) T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDIN---YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213) T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCC---EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCEEEEEEE T ss_conf 95299980358899999998689982---899983599999999999983885446784365887751377643588871 Q ss_pred CCCCH------------HHHHHHHHHHHCC Q ss_conf 47998------------9999984885206 Q gi|254780807|r 149 ALADL------------DTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~l------------~~ll~~~~pllk~ 166 (168) -.-|+ +.+++.....||+ T Consensus 116 fpdPw~k~~h~krRl~~~~~l~~i~r~Lkp 145 (213) T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGK 145 (213) T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTT T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 356553100003654218999999983799 No 71 >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Probab=97.83 E-value=9.6e-05 Score=46.96 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=77.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHH-HHHC-------- Q ss_conf 2344311111467733565652275546634787500003899999999973898--0998042665-3312-------- Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQE-APQM-------- 138 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~-~~~~-------- 138 (168) .+.++++.|||+.|+-++-+|-..|+ ++.++-+|...+++..-++..++.|+. ++++.+++-+ ++.. T Consensus 59 ~~ak~iLEiGT~~GySal~lA~al~~--~g~v~tie~~~~~~~~A~~~~~~ag~~~~I~~~~g~A~e~L~~L~~~~~~~~ 136 (239) T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPE--DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239) T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCC--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCCCCC T ss_conf 29977999725458899999971787--8868999453888999999999879962599996168999999884523332 Q ss_pred --------CCCCCEEEECCCCC-HHHHHHHHHHHHCC Q ss_conf --------47986999914799-89999984885206 Q gi|254780807|r 139 --------ITTCDVISARALAD-LDTLLEYSFPWLYQ 166 (168) Q Consensus 139 --------~~~~d~v~sRA~a~-l~~ll~~~~pllk~ 166 (168) .++||+|+--|-.+ ....++++.++|++ T Consensus 137 ~~~~~~~~~~~fD~IFiDa~K~~Y~~y~~~~~~lL~~ 173 (239) T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKP 173 (239) T ss_dssp GGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEE T ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC T ss_conf 1100124677756899937877759999999997279 No 72 >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334} Probab=97.82 E-value=0.00014 Score=46.10 Aligned_cols=95 Identities=15% Similarity=0.003 Sum_probs=67.6 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCC-CCCCCCEEEEEHHHHH------HHHHHHHHHHHHCC-CC-EEEECHHHH---HH Q ss_conf 1234431111146773356565227-5546634787500003------89999999997389-80-998042665---33 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQL-SSIEGGLVNLIESKNK------KASFLRYVVQKTAA-RG-KVFACRIQE---AP 136 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~-p~~~~~~v~Lves~~K------K~~FL~~~~~~L~L-~~-~vi~~r~e~---~~ 136 (168) ++.+.+|+|+|+|.|.....+|=.. |+ .+|+.||.+.- -+...+.-..+.++ ++ ++..+.+++ .+ T Consensus 41 i~pG~rVLDiGCG~G~~t~~la~~~g~~---~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~i~~~~~d~~~~~~lp 117 (275) T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSS---GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP 117 (275) T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTT---CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCC T ss_conf 7986989996653885789999983877---7523476777776666899999999885577774010200154402476 Q ss_pred HCCCCCCEEEECCC----CCHHHHHHHHHHHHCC Q ss_conf 12479869999147----9989999984885206 Q gi|254780807|r 137 QMITTCDVISARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 137 ~~~~~~d~v~sRA~----a~l~~ll~~~~pllk~ 166 (168) -..++||.|+|+.+ .+....++....+||+ T Consensus 118 ~~~~sFD~V~~~~~l~~~~d~~~~l~~~~rvLkp 151 (275) T 3bkx_A 118 IADQHFDRVVLAHSLWYFASANALALLFKNMAAV 151 (275) T ss_dssp GTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTT T ss_pred CCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCC T ss_conf 4457626897801633289999999999997687 No 73 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Probab=97.81 E-value=4.7e-05 Score=48.77 Aligned_cols=92 Identities=14% Similarity=0.007 Sum_probs=68.5 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEE Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~s 147 (168) +.+.+|+|||+|.|-..+.++-. + +..++.||.+..-+...+..+.+.|+. ++++.+.+++.. ....||.|++ T Consensus 35 ~pg~rVLDiGcG~G~~~~~la~~-~---~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~~-~~~~fD~v~~ 109 (256) T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARD-H---GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAAC 109 (256) T ss_dssp CTTCEEEEETCTTCHHHHHHHHH-T---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSCEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHH-C---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC-CCCCEEEEEE T ss_conf 99999999858888899999986-4---99899998983677899886776065544441136364505-6784469999 Q ss_pred CCC----CCHHHHHHHHHHHHCC Q ss_conf 147----9989999984885206 Q gi|254780807|r 148 RAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~----a~l~~ll~~~~pllk~ 166 (168) ..+ .+...+++-....||+ T Consensus 110 ~~~~~~~~~~~~~l~~~~r~Lkp 132 (256) T 1nkv_A 110 VGATWIAGGFAGAEELLAQSLKP 132 (256) T ss_dssp ESCGGGTSSSHHHHHHHTTSEEE T ss_pred ECCEECCCCHHHHHHHHHHHCCC T ss_conf 74410268999999999997393 No 74 >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46 Probab=97.80 E-value=7.3e-05 Score=47.67 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=58.9 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH----HHCCCCCC Q ss_conf 01234431111146773356565227554663478750000389999999997389809980426653----31247986 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA----PQMITTCD 143 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~----~~~~~~~d 143 (168) ...++++|+|+|+|.|--|+..+- .+.+++.+|.+...+..+++-++.+++++.++...+... .....+|| T Consensus 38 ~~~~~~~vLDl~~G~G~~~i~a~~-----~ga~vv~vD~~~~ai~~~~~N~~~~g~~~~v~~~~~d~~~~~~~~~~~~fD 112 (171) T 1ws6_A 38 RYPRRGRFLDPFAGSGAVGLEAAS-----EGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFT 112 (171) T ss_dssp HCTTCCEEEEETCSSCHHHHHHHH-----TTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEE T ss_pred CCCCCCEEEECCCCHHHHHHHHHH-----CCCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCEE T ss_conf 457979899962067899999998-----089530060687899999987886066555999778987555553388557 Q ss_pred EEEEC Q ss_conf 99991 Q gi|254780807|r 144 VISAR 148 (168) Q Consensus 144 ~v~sR 148 (168) +|++= T Consensus 113 lI~~D 117 (171) T 1ws6_A 113 VAFMA 117 (171) T ss_dssp EEEEC T ss_pred EEEEC T ss_conf 99987 No 75 >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Probab=97.79 E-value=7.5e-05 Score=47.59 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=65.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC------CEEEECHHHHHHHCCCCCCE Q ss_conf 344311111467733565652275546634787500003899999999973898------09980426653312479869 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR------GKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~------~~vi~~r~e~~~~~~~~~d~ 144 (168) .+++|+|+|+|.|.....|+-..+.. .|+.+|.+..-+...++.....++. ........++.+....+||+ T Consensus 29 ~~~rVLDvGCG~G~~~~~La~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 105 (219) T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFE---QITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDA 105 (219) T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCC---EEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSE T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCC---EEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHCCHHCCCCCE T ss_conf 84989998187899999999838974---563225999999999998655044123200100011453325000365545 Q ss_pred EEECCCCC------HHHHHHHHHHHHCC Q ss_conf 99914799------89999984885206 Q gi|254780807|r 145 ISARALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~a~------l~~ll~~~~pllk~ 166 (168) |++..+-. +..+++....++++ T Consensus 106 i~~~~vl~hl~~~~~~~~l~~~~~ll~p 133 (219) T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRP 133 (219) T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCC T ss_pred EHHHHHHHHCCHHHHHHHHHHHHHHCCC T ss_conf 6275569718958999999999973789 No 76 >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} Probab=97.78 E-value=7.4e-05 Score=47.61 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=68.4 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHHHHHCCCCCCEE Q ss_conf 123443111114677335656522-7554663478750000389999999997389-80-99804266533124798699 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQEAPQMITTCDVI 145 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v 145 (168) +..+.+++|+|||.|.-.+.+|-. .|+ ..|+.+|.++..+...++-++..++ ++ .++...+++.......||.| T Consensus 94 i~pG~~VLEiG~GsG~lt~~lA~~v~~~---g~V~~~d~~~~~~~~A~~n~~~~~~~~~v~~~~~d~~~~~~~~~~~d~v 170 (258) T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEK---GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGV 170 (258) T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEE T ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCEE T ss_conf 8999999987770679999999972887---3899984899999999999998089985568836578855556432389 Q ss_pred EECCCCCHHHHHHHHHHHHCC Q ss_conf 991479989999984885206 Q gi|254780807|r 146 SARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~l~~ll~~~~pllk~ 166 (168) +.-.-.|+. .++-+.+.||+ T Consensus 171 ~ld~p~p~~-~l~~~~~~LKp 190 (258) T 2pwy_A 171 ALDLMEPWK-VLEKAALALKP 190 (258) T ss_dssp EEESSCGGG-GHHHHHHHEEE T ss_pred EECCCCHHH-HHHHHHHHCCC T ss_conf 964889999-99999986678 No 77 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Probab=97.77 E-value=8.1e-05 Score=47.41 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=63.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 23443111114677335656522755466347875000038999999999738980998042665331247986999914 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ..+.+|+|||+|.|--...|+=-+|. ..|+.+|.+..-+ +.+.+. .-+..+....+++++. .++||.|+|++ T Consensus 32 ~~~~rVLDiGCGtG~~t~~la~~~~~---~~v~gvD~S~~ml---~~A~~~-~~~v~~~~~d~~~~~~-~~~fD~V~s~~ 103 (259) T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGV---NVITGIDSDDDML---EKAADR-LPNTNFGKADLATWKP-AQKADLLYANA 103 (259) T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCT---TSEEEEESCHHHH---HHHHHH-STTSEEEECCTTTCCC-SSCEEEEEEES T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC---CEEEEEECCHHHH---HHHHHH-CCCCCCEEEEHHHCCC-CCCCCEECCCC T ss_conf 89898999816286999999987899---8799998987999---999972-5663120142421243-54555641201 Q ss_pred C----CCHHHHHHHHHHHHCC Q ss_conf 7----9989999984885206 Q gi|254780807|r 150 L----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 150 ~----a~l~~ll~~~~pllk~ 166 (168) + ..+..++.-....||+ T Consensus 104 ~l~~~~d~~~~l~~~~~~Lkp 124 (259) T 2p35_A 104 VFQWVPDHLAVLSQLMDQLES 124 (259) T ss_dssp CGGGSTTHHHHHHHHGGGEEE T ss_pred EEEECCCHHHHHHHHHHHCCC T ss_conf 577468889999999985399 No 78 >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Probab=97.77 E-value=0.00012 Score=46.33 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=64.7 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC------CCEEEECHHHHHHHCCCCCCE Q ss_conf 34431111146773356565227554663478750000389999999997389------809980426653312479869 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA------RGKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L------~~~vi~~r~e~~~~~~~~~d~ 144 (168) ...+|+|+|+|.|..+..|+=..|.. .|+.+|.+..-+..-++-....++ +........++.+....+||+ T Consensus 29 ~~~rVLDvGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 105 (217) T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFE---QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDA 105 (217) T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCS---EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSE T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCC---EEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCHHCCCCCCE T ss_conf 83989998188879999999847652---252103899999999998876245311222210012664344000476565 Q ss_pred EEECCCC---C---HHHHHHHHHHHHCC Q ss_conf 9991479---9---89999984885206 Q gi|254780807|r 145 ISARALA---D---LDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~a---~---l~~ll~~~~pllk~ 166 (168) |++.-+- + ...+++....+|+. T Consensus 106 I~~~~vl~hl~~~~~~~~l~~~~~~Lkp 133 (217) T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQP 133 (217) T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCC T ss_pred EEEEHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 5010338718978999999999986589 No 79 >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} Probab=97.76 E-value=5e-05 Score=48.62 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=63.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 34431111146773356565227554663478750000389999999997389-80998042665331247986999914 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ++.+|+|||+|.|.....++-. +. ..|+.+|.++. ++.++.+...- .+..+++.+++.+-..+.||+|++.. T Consensus 43 ~g~rVLDiGCG~G~~~~~l~~~-~~---~~V~gvD~S~~---~l~~a~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 115 (243) T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH-GA---SYVLGLDLSEK---MLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL 115 (243) T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TC---SEEEEEESCHH---HHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES T ss_pred CCCEEEEECCCCCHHHHHHHHC-CC---CEEEEECCHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 8899999788898999999975-98---78999875798---99999861344433310023344665543454565513 Q ss_pred C----CCHHHHHHHHHHHHCC Q ss_conf 7----9989999984885206 Q gi|254780807|r 150 L----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 150 ~----a~l~~ll~~~~pllk~ 166 (168) + ..+...++-....||+ T Consensus 116 ~l~~~~d~~~~l~ei~r~Lkp 136 (243) T 3bkw_A 116 ALHYVEDVARLFRTVHQALSP 136 (243) T ss_dssp CGGGCSCHHHHHHHHHHHEEE T ss_pred EEEECCCHHHHHHHHHHHCCC T ss_conf 676168999999999998385 No 80 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Probab=97.76 E-value=0.00012 Score=46.51 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=65.9 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 01234431111146773356565227554663478750000389999999997389809980426653312479869999 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) .++++.+|+|+|+|.|-....+| + +..|+.+|.++.-+...++-..+.+.+++++++.+++++. ..+||.+++ T Consensus 30 ~~~~~~~VLD~GCG~G~~~~~la---~---~~~v~giD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~~-~~~~d~v~~ 102 (243) T 3d2l_A 30 QVEPGKRIADIGCGTGTATLLLA---D---HYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL-PEPVDAITI 102 (243) T ss_dssp HSCTTCEEEEESCTTCHHHHHHT---T---TSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC-SSCEEEEEE T ss_pred HCCCCCEEEEECCCCCHHHHHHH---H---CCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHCCCC-CCCCCCHHH T ss_conf 68999999996887879999986---1---8579999885188999887653012023310120000112-434343134 Q ss_pred C-----CCCC---HHHHHHHHHHHHCC Q ss_conf 1-----4799---89999984885206 Q gi|254780807|r 148 R-----ALAD---LDTLLEYSFPWLYQ 166 (168) Q Consensus 148 R-----A~a~---l~~ll~~~~pllk~ 166 (168) - .+.+ +..+++-....||+ T Consensus 103 ~~~s~~~l~~~~~~~~~l~~i~~~Lkp 129 (243) T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTD 129 (243) T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEE T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCC T ss_conf 332211156715778999999976488 No 81 >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5} Probab=97.75 E-value=0.00012 Score=46.39 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=77.8 Q ss_pred ECCHHHHHHHHHH---------HHHHHHHC--CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHH Q ss_conf 0899999898646---------35643100--123443111114677335656522755466347875000038999999 Q gi|254780807|r 48 SSTVEDFWIRHVE---------DSLRVFQL--HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRY 116 (168) Q Consensus 48 ~~~~~~~~~rHi~---------DSl~~~~~--~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~ 116 (168) +-+..++|.+.+- |+.++... +..+.+++|+|||.|.-.+.||=. ...|+-+|.++..+...++ T Consensus 57 ~p~~~d~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiGtGsG~lt~~La~~-----~g~v~t~e~~e~~~~~A~~ 131 (248) T 2yvl_A 57 RPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-----AGEVWTFEAVEEFYKTAQK 131 (248) T ss_dssp CCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-----SSEEEEECSCHHHHHHHHH T ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC-----CCEEEEECCCHHHHHHHHH T ss_conf 79808998454888874067899999999828999997997374311999999860-----7879998288999999999 Q ss_pred HHHHHCC-CC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 9997389-80-99804266533124798699991479989999984885206 Q gi|254780807|r 117 VVQKTAA-RG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 117 ~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168) -.++.++ ++ ++++..+.+..-....||.|+.-.-.|+.. ++-+.+.||+ T Consensus 132 n~~~~g~~~nv~~~~~D~~~~~~~~~~fD~V~ld~p~p~~~-l~~~~~~LKp 182 (248) T 2yvl_A 132 NLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHY-LEKVHKSLME 182 (248) T ss_dssp HHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSSCGGGG-HHHHHHHBCT T ss_pred HHHHHCCCCCEEEEECCHHHCCCCCCCCCEEEEECCCHHHH-HHHHHHHCCC T ss_conf 89970057705999912221432458789999917876888-9999984288 No 82 >2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7} Probab=97.74 E-value=0.00011 Score=46.69 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=59.3 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCC--CCCEEEEEHHHHHHHHHHHHHHHH-----HCCCC-EEEECHHHHH---- Q ss_conf 01234431111146773356565227554--663478750000389999999997-----38980-9980426653---- Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSI--EGGLVNLIESKNKKASFLRYVVQK-----TAARG-KVFACRIQEA---- 135 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~--~~~~v~Lves~~KK~~FL~~~~~~-----L~L~~-~vi~~r~e~~---- 135 (168) .++.+.+++|||||.|+-...+|-+-..+ ...+|+.+|..+.-+.+-++..++ ++++| +++++.+.+. T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~~~~~l~~~~g~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~gd~~~~~~~g 156 (227) T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227) T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCC T ss_conf 47998869983799739999999997652245653899970599999999999851044415575899977732012557 Q ss_pred HHCCCCCCEEEECCCCC Q ss_conf 31247986999914799 Q gi|254780807|r 136 PQMITTCDVISARALAD 152 (168) Q Consensus 136 ~~~~~~~d~v~sRA~a~ 152 (168) .....+||.|..-|-.+ T Consensus 157 ~~~~~pfD~I~v~~a~~ 173 (227) T 2pbf_A 157 KKELGLFDAIHVGASAS 173 (227) T ss_dssp HHHHCCEEEEEECSBBS T ss_pred CCCCCCCCEEEEEECHH T ss_conf 87678824799940435 No 83 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Probab=97.73 E-value=0.00017 Score=45.57 Aligned_cols=91 Identities=10% Similarity=0.029 Sum_probs=66.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) .+++++|+|+|.|--.+.||= .+..|+.+|.+..-+...++...+.++++.++...+++.+.....||.+++--. T Consensus 29 ~~~~vLDlGcG~G~~~~~la~-----~G~~V~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~d~~~~~~~ 103 (202) T 2kw5_A 29 PQGKILCLAEGEGRNACFLAS-----LGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC 103 (202) T ss_dssp CSSEEEECCCSCTHHHHHHHT-----TTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC T ss_pred CCCCEEEECCCCCHHHHHHHH-----CCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCEEEEEEEEE T ss_conf 989399983778999999998-----699146777789999999998887199558998226338998895999851578 Q ss_pred -CCHH---HHHHHHHHHHCC Q ss_conf -9989---999984885206 Q gi|254780807|r 151 -ADLD---TLLEYSFPWLYQ 166 (168) Q Consensus 151 -a~l~---~ll~~~~pllk~ 166 (168) .+.+ .++.-....||+ T Consensus 104 ~~~~~~~~~~l~~~~~~Lkp 123 (202) T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKP 123 (202) T ss_dssp CCCHHHHHHHHHHHHTTCCS T ss_pred ECCHHHHHHHHHHHHHHCCC T ss_conf 53788999999999998197 No 84 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Probab=97.72 E-value=4.7e-05 Score=48.74 Aligned_cols=80 Identities=8% Similarity=-0.062 Sum_probs=54.6 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHHCCCCCCE Q ss_conf 1001234431111146773356565227554663478750000389999999997389-809980426653312479869 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~~~~~~d~ 144 (168) ..+++.+.+|+|||+|.|.-+..|+-. ....|+.||-++.-+...+... -+. +...+...+++++-....||+ T Consensus 37 ~~~l~~~~~iLDiGCG~G~~~~~L~~~----g~~~v~giD~s~~~i~~~~~~~--~~~~~~~~~~~D~~~l~~~~~sFD~ 110 (215) T 2pxx_A 37 EPELRPEDRILVLGCGNSALSYELFLG----GFPNVTSVDYSSVVVAAMQACY--AHVPQLRWETMDVRKLDFPSASFDV 110 (215) T ss_dssp GGGCCTTCCEEEETCTTCSHHHHHHHT----TCCCEEEEESCHHHHHHHHHHT--TTCTTCEEEECCTTSCCSCSSCEEE T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCEEE T ss_conf 963899998999637777999999984----8983999827625667999983--4786354321454457789997789 Q ss_pred EEECCCC Q ss_conf 9991479 Q gi|254780807|r 145 ISARALA 151 (168) Q Consensus 145 v~sRA~a 151 (168) |+++++- T Consensus 111 Vi~~~~l 117 (215) T 2pxx_A 111 VLEKGTL 117 (215) T ss_dssp EEEESHH T ss_pred EEECCCH T ss_conf 9999745 No 85 >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Probab=97.71 E-value=7e-05 Score=47.76 Aligned_cols=91 Identities=9% Similarity=-0.042 Sum_probs=68.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH----HHCCCCCCEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-9980426653----3124798699 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA----PQMITTCDVI 145 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~----~~~~~~~d~v 145 (168) .+.+|+|+|+|.|.-++.+|-. +..|+.+|.+++.+...++-.+..++++ +++++.+.+. .....+||+| T Consensus 209 ~g~~VLDl~~g~G~~s~~~a~~-----~~~V~~vD~s~~al~~a~~n~~~ng~~~~~~~~~D~~~~l~~~~~~~~~fD~V 283 (382) T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV 283 (382) T ss_dssp CEEEEEEETCTTTHHHHHHHHH-----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEE T ss_conf 6980410467787799999846-----77267204639999999999997286886678601777777778626799869 Q ss_pred EECC-------------CCCHHHHHHHHHHHHCC Q ss_conf 9914-------------79989999984885206 Q gi|254780807|r 146 SARA-------------LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA-------------~a~l~~ll~~~~pllk~ 166 (168) +.-+ ......++..+.++|++ T Consensus 284 ilDpP~~~~~~~~~~~~~~~y~~l~~~a~~lL~p 317 (382) T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE 317 (382) T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9827211589889999999999999999986798 No 86 >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8} Probab=97.69 E-value=0.00013 Score=46.15 Aligned_cols=101 Identities=18% Similarity=0.109 Sum_probs=65.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHH Q ss_conf 99898646356431001234431111146773356565227554663478750000389999999997389809980426 Q gi|254780807|r 53 DFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRI 132 (168) Q Consensus 53 ~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~ 132 (168) ..+.++..+.+ -.+++.+.+++|||+|.|.. +..+|.. .|+.+|.+..- ++.+.+ ..-+...++..+ T Consensus 20 ~~~~~~~~~~~--~~~l~~g~~iLDiGCG~G~~----~~~l~~~---~v~g~D~s~~~---l~~A~~-~~~~~~~~~~~~ 86 (211) T 2gs9_A 20 AYVIAEEERAL--KGLLPPGESLLEVGAGTGYW----LRRLPYP---QKVGVEPSEAM---LAVGRR-RAPEATWVRAWG 86 (211) T ss_dssp HHHHHHHHHHH--HTTCCCCSEEEEETCTTCHH----HHHCCCS---EEEEECCCHHH---HHHHHH-HCTTSEEECCCT T ss_pred HHHHHHHHHHH--HHHCCCCCEEEEECCCCHHH----HHHCCCC---CEEEEECCHHH---HHHHHH-CCCCCEEEECCH T ss_conf 78999999999--98579999899989986099----9973768---68998389999---998763-366520343423 Q ss_pred HHHHHCCCCCCEEEECCCC----CHHHHHHHHHHHHCC Q ss_conf 6533124798699991479----989999984885206 Q gi|254780807|r 133 QEAPQMITTCDVISARALA----DLDTLLEYSFPWLYQ 166 (168) Q Consensus 133 e~~~~~~~~~d~v~sRA~a----~l~~ll~~~~pllk~ 166 (168) ++++-..+.||+|++..+- .+...+.-....||+ T Consensus 87 ~~l~~~~~~fD~V~~~~~l~h~~d~~~~l~~i~r~LkP 124 (211) T 2gs9_A 87 EALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRP 124 (211) T ss_dssp TSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEE T ss_pred HCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC T ss_conf 11788756422798754787248999999999998388 No 87 >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Probab=97.69 E-value=0.0005 Score=42.83 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=67.3 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEE Q ss_conf 123443111114677335656522755466347875000038999999999738980--998042665331247986999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~ 146 (168) ++.+.+|+|||+|-|-+.+-+|-..+ ..|+.++-+..-+...++.+.+.++++ .+.....++ ...+||.|+ T Consensus 88 l~~g~rVLDIGCG~G~~a~~~a~~~g----~~v~gi~is~~q~~~a~~~~~~~gl~~~~~~~~~d~~~---~~~~fD~i~ 160 (318) T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFD----VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---FAEPVDRIV 160 (318) T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC----CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---CCCCCSEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCHHH---HCCCCCEEE T ss_conf 99999898978873699999998369----63899989999999999998763874100165410655---037876352 Q ss_pred ECCCC------CHHHHHHHHHHHHCCC Q ss_conf 91479------9899999848852067 Q gi|254780807|r 147 ARALA------DLDTLLEYSFPWLYQK 167 (168) Q Consensus 147 sRA~a------~l~~ll~~~~pllk~k 167 (168) |-.+- .++.+++-+..+||+- T Consensus 161 si~~~eh~~~~~~~~~f~~~~r~LkpG 187 (318) T 2fk8_A 161 SIEAFEHFGHENYDDFFKRCFNIMPAD 187 (318) T ss_dssp EESCGGGTCGGGHHHHHHHHHHHSCTT T ss_pred EHHHHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 046888605311899999999763868 No 88 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Probab=97.68 E-value=8.5e-05 Score=47.26 Aligned_cols=93 Identities=9% Similarity=-0.006 Sum_probs=66.5 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHHHHHCCCCCCEE Q ss_conf 123443111114677335656522-7554663478750000389999999997389-80-99804266533124798699 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQEAPQMITTCDVI 145 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v 145 (168) +..+.+|+|+|+|.|.-.+.+|=+ .|+ ..|+.+|.++..+...++-.++.+. ++ ++++..+.+... ...||.| T Consensus 108 i~PG~rVLEiG~GsG~lt~~LA~~v~~~---g~V~~vD~~e~~~~~A~~n~~~~~~~~nV~~~~~Di~e~~~-~~~fD~V 183 (275) T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGK---GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-DQMYDAV 183 (275) T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTS---SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC-SCCEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHHCCCCCCHHEEHHHHHCCC-CCCCCCE T ss_conf 9997989995771878999999860899---58999908899999999867763156752111011221024-4423305 Q ss_pred EECCCCCHHHHHHHHHHHHCC Q ss_conf 991479989999984885206 Q gi|254780807|r 146 SARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~l~~ll~~~~pllk~ 166 (168) +.-.-.|+ ..++.+...||+ T Consensus 184 ~ld~p~p~-~~l~~~~~~LKp 203 (275) T 1yb2_A 184 IADIPDPW-NHVQKIASMMKP 203 (275) T ss_dssp EECCSCGG-GSHHHHHHTEEE T ss_pred EEECCCHH-HHHHHHHHHCCC T ss_conf 87056899-999999975688 No 89 >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2} Probab=97.67 E-value=4.3e-05 Score=49.00 Aligned_cols=80 Identities=10% Similarity=0.021 Sum_probs=59.8 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEE Q ss_conf 00123443111114677335656522755466347875000038999999999738980998042665331247986999 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168) .-+..+.+|+|||+|.|.-...++- .+..|+.+|.+..-+...++-....+........++++.+.....||.|+ T Consensus 41 ~~~~pg~~vLdvGcG~G~~~~~l~~-----~g~~v~g~D~S~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vv 115 (261) T 3iv6_A 41 ENIVPGSTVAVIGASTRFLIEKALE-----RGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVL 115 (261) T ss_dssp TTCCTTCEEEEECTTCHHHHHHHHH-----TTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEE T ss_pred HCCCCCCEEEEECCCCCHHHHHHHH-----CCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCEEE T ss_conf 1799999799988978889999996-----79989997778999999999746405653302122532334578846899 Q ss_pred ECCCC Q ss_conf 91479 Q gi|254780807|r 147 ARALA 151 (168) Q Consensus 147 sRA~a 151 (168) |..+- T Consensus 116 ~~~~~ 120 (261) T 3iv6_A 116 NDRLI 120 (261) T ss_dssp EESCG T ss_pred ECCHH T ss_conf 81378 No 90 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Probab=97.66 E-value=0.00016 Score=45.67 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=78.0 Q ss_pred EEEECCHHHHHHHHHH---------HHHHHHHC--CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHH Q ss_conf 0430899999898646---------35643100--123443111114677335656522-75546634787500003899 Q gi|254780807|r 45 LVSSSTVEDFWIRHVE---------DSLRVFQL--HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKAS 112 (168) Q Consensus 45 Lts~~~~~~~~~rHi~---------DSl~~~~~--~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~ 112 (168) .+-+-+.+++. .++- |+..++.. +..+.+++|+|+|.|.-.+.+|=. .|+ +.|+.+|.++..+. T Consensus 76 ~v~~pt~~d~~-~~~~r~~qiiypkD~~~Ii~~ldi~pG~~VLDiG~GsG~lt~~lA~~v~~~---g~V~~~D~~~~~~~ 151 (277) T 1o54_A 76 YILIPSLIDEI-MNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSS---GKVFAYEKREEFAK 151 (277) T ss_dssp EEECCCHHHHH-HTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTT---CEEEEECCCHHHHH T ss_pred EEECCCHHHHH-HCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC---EEEEEEECCHHHHH T ss_conf 99679989999-518888622688999999998089999989976888279999999851898---09999968899999 Q ss_pred HHHHHHHHHCC-CC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 99999997389-80-99804266533124798699991479989999984885206 Q gi|254780807|r 113 FLRYVVQKTAA-RG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 113 FL~~~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168) ..++-.++.++ ++ ++.+..+.+... ...||.|+.-.-. +...++.+...||+ T Consensus 152 ~A~~n~~~~gl~~~v~~~~~D~~~~~~-~~~~D~V~ld~p~-p~~~l~~~~~~LKp 205 (277) T 1o54_A 152 LAESNLTKWGLIERVTIKVRDISEGFD-EKDVDALFLDVPD-PWNYIDKCWEALKG 205 (277) T ss_dssp HHHHHHHHTTCGGGEEEECCCGGGCCS-CCSEEEEEECCSC-GGGTHHHHHHHEEE T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEECCCCC-HHHHHHHHHHHCCC T ss_conf 999989974998767999686224444-4454102217899-89999999973589 No 91 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Probab=97.66 E-value=0.00014 Score=46.02 Aligned_cols=80 Identities=9% Similarity=-0.026 Sum_probs=59.3 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHHHHHHHC-CC Q ss_conf 3100123443111114677335656522-7554663478750000389999999997389-80-9980426653312-47 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRIQEAPQM-IT 140 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~e~~~~~-~~ 140 (168) +..+++++.+|+|+|+|.|--++.+|=. .|. .+|+.+|-+++.+.-.++-..+++. ++ +++++..++++.. .. T Consensus 16 l~~~ik~G~~VLDlGcG~G~~t~~la~~~~~~---~~V~giDis~~~l~~ar~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 92 (197) T 3eey_A 16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDC 92 (197) T ss_dssp HHHHCCTTCEEEESCCTTSHHHHHHHHHHCTT---CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCS T ss_pred HHHHCCCCCEEEEEEEECCHHHHHHHHHHCCC---EEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCC T ss_conf 99858999999999204889999999983898---199999738899899999999839987789998586760121577 Q ss_pred CCCEEEE Q ss_conf 9869999 Q gi|254780807|r 141 TCDVISA 147 (168) Q Consensus 141 ~~d~v~s 147 (168) .+|.++. T Consensus 93 ~~~~~~~ 99 (197) T 3eey_A 93 PVKAVMF 99 (197) T ss_dssp CEEEEEE T ss_pred CCCEEEE T ss_conf 6430465 No 92 >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Probab=97.60 E-value=0.00048 Score=42.91 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=73.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHH-HH----HCCCCC Q ss_conf 23443111114677335656522755466347875000038999999999738980--998042665-33----124798 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQE-AP----QMITTC 142 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~-~~----~~~~~~ 142 (168) .++++|++||||.|+=.+-+|-..|+- ++++.+|.....+...++...+.++.. ..+.+...+ ++ +...+| T Consensus 57 ~~pk~ILEiGt~~G~St~~la~al~~~--g~i~tie~~~~~~~~a~~~~~~~g~~~~i~~~~~~~~d~l~~L~~~~~~~f 134 (223) T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSG--GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223) T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSS--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCE T ss_conf 499889998344278999999748888--859999448888999999999849976466873452367777650578766 Q ss_pred CEEEECCC-CCHHHHHHHHHHHHCCC Q ss_conf 69999147-99899999848852067 Q gi|254780807|r 143 DVISARAL-ADLDTLLEYSFPWLYQK 167 (168) Q Consensus 143 d~v~sRA~-a~l~~ll~~~~pllk~k 167 (168) |+|..-|- ......++.+.++|++- T Consensus 135 D~ifiD~~~~~~~~~~~~~~~lLrpG 160 (223) T 3duw_A 135 DFIFIDADKQNNPAYFEWALKLSRPG 160 (223) T ss_dssp SEEEECSCGGGHHHHHHHHHHTCCTT T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCC T ss_conf 59999657466899999998225899 No 93 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Probab=97.60 E-value=0.00027 Score=44.40 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=65.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHH---CCCC-EEEECHHHHHHHCCCCCCE Q ss_conf 23443111114677335656522-75546634787500003899999999973---8980-9980426653312479869 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKT---AARG-KVFACRIQEAPQMITTCDV 144 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L---~L~~-~vi~~r~e~~~~~~~~~d~ 144 (168) ..+.+|+|+|||.|.-.+.||=+ .|+ ++|+.+|.+++.+...++-.+.. ..+| .++++.+.+..-....||. T Consensus 98 ~PG~~VLE~GtGsG~lT~~LAr~vgp~---G~V~t~D~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~ 174 (280) T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPA---GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDR 174 (280) T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEE T ss_pred CCCCEEEEEEECCHHHHHHHHHHHCCC---EEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCE T ss_conf 999989992276159999999974998---59999958999999999855543157886299995551225566788786 Q ss_pred EEECCCCCHHHHHHHHHHHHC Q ss_conf 999147998999998488520 Q gi|254780807|r 145 ISARALADLDTLLEYSFPWLY 165 (168) Q Consensus 145 v~sRA~a~l~~ll~~~~pllk 165 (168) |+.-.-.|+..+- -+.+.|| T Consensus 175 VflDlp~P~~~l~-~~~~~Lk 194 (280) T 1i9g_A 175 AVLDMLAPWEVLD-AVSRLLV 194 (280) T ss_dssp EEEESSCGGGGHH-HHHHHEE T ss_pred EEECCCCHHHHHH-HHHHHCC T ss_conf 8972788899999-9998447 No 94 >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Probab=97.59 E-value=0.00034 Score=43.80 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=76.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHH-HHHC-----CCC Q ss_conf 2344311111467733565652275546634787500003899999999973898--0998042665-3312-----479 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQE-APQM-----ITT 141 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~-~~~~-----~~~ 141 (168) .+.++++.|||+.|+-++-+|-..|. .+.++.+|...++...-+...++.|+. .+++.+.+-+ ++.. ..+ T Consensus 71 ~~ak~iLEiGT~~GyStl~lA~al~~--~g~v~tiE~~~~~~~~A~~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~ 148 (232) T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPP--DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232) T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCT--TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCC--CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCC T ss_conf 49978999843438999999985899--8589999767414899999999869986289996258999999973256776 Q ss_pred CCEEEECCCC-CHHHHHHHHHHHHCC Q ss_conf 8699991479-989999984885206 Q gi|254780807|r 142 CDVISARALA-DLDTLLEYSFPWLYQ 166 (168) Q Consensus 142 ~d~v~sRA~a-~l~~ll~~~~pllk~ 166 (168) ||+|..-|-. .....++++.|+|++ T Consensus 149 fD~iFiDadK~~y~~y~~~~~~lLr~ 174 (232) T 3cbg_A 149 FDLIFIDADKRNYPRYYEIGLNLLRR 174 (232) T ss_dssp EEEEEECSCGGGHHHHHHHHHHTEEE T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCC T ss_conf 01899608888899999999998367 No 95 >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Probab=97.55 E-value=0.00029 Score=44.21 Aligned_cols=81 Identities=17% Similarity=0.019 Sum_probs=58.9 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-----C-CEEEECHHHHHHHCCC Q ss_conf 0123443111114677335656522-7554663478750000389999999997389-----8-0998042665331247 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAA-----R-GKVFACRIQEAPQMIT 140 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-----~-~~vi~~r~e~~~~~~~ 140 (168) .++++.+|+|||||.|+-...+|-+ -|. ..|+.+|....-+.+.++..++.++ . ..++.+...+...... T Consensus 74 ~~~pg~~VLdiG~GsGy~ta~la~lvg~~---g~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 150 (226) T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGCT---GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA 150 (226) T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCC---CEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC T ss_conf 08999989997788899999999970888---649998688999999999986548643102346799656456665567 Q ss_pred CCCEEEECCCC Q ss_conf 98699991479 Q gi|254780807|r 141 TCDVISARALA 151 (168) Q Consensus 141 ~~d~v~sRA~a 151 (168) +||.|..-|-. T Consensus 151 ~fD~I~~~~~~ 161 (226) T 1i1n_A 151 PYDAIHVGAAA 161 (226) T ss_dssp CEEEEEECSBB T ss_pred CEEEEEECCCH T ss_conf 60168752677 No 96 >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Probab=97.54 E-value=0.00057 Score=42.51 Aligned_cols=92 Identities=16% Similarity=0.050 Sum_probs=70.3 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHC--CCCCCEEEEC Q ss_conf 443111114677335656522755466347875000038999999999738980-9980426653312--4798699991 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQM--ITTCDVISAR 148 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~--~~~~d~v~sR 148 (168) ...++|||+|.|-=.+-+|-.+|+.. ++.+|.+.+.+.....-+.+.+++| .++++.++++.+. ...+|.|..- T Consensus 42 ~p~iLEIGcG~G~~~~~lA~~~P~~~---~igiD~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~l~~~~~~~~~d~v~~~ 118 (214) T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDIN---YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214) T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCC---EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEEECC T ss_conf 97189994108699999999789997---797407788899999999983998644552369887421257743111124 Q ss_pred CCCCH------------HHHHHHHHHHHCC Q ss_conf 47998------------9999984885206 Q gi|254780807|r 149 ALADL------------DTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~l------------~~ll~~~~pllk~ 166 (168) ---|+ +.+++.....||+ T Consensus 119 fPdPwpK~rh~krRli~~~fl~~~~r~Lkp 148 (214) T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPE 148 (214) T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCT T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHCCC T ss_conf 678662011131553107899999997488 No 97 >1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=97.54 E-value=0.0004 Score=43.37 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=55.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 23443111114677335656522755466347875000038999999999738980998042665331247986999914 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ..+++++|+|+|.|.-..+++ .++.+|.++.-+...++ + +...+++.+++++-..++||+|++.. T Consensus 46 ~~~~~vLDiGcGtG~~~~~l~---------~~~giD~s~~~i~~a~~---~---~i~~~~~d~~~l~~~~~sfD~V~~~~ 110 (219) T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLK---------IKIGVEPSERMAEIARK---R---GVFVLKGTAENLPLKDESFDFALMVT 110 (219) T ss_dssp CCSSCEEEETCTTSTTHHHHT---------CCEEEESCHHHHHHHHH---T---TCEEEECBTTBCCSCTTCEEEEEEES T ss_pred CCCCEEEEECCCCCHHHHHHH---------HEEEEECCHHHHHHHHH---C---CCEEEECCHHHCCCCCCCCCEECCCC T ss_conf 899909998586779999775---------86999499999999998---6---99899877787899878733203132 Q ss_pred CC----CHHHHHHHHHHHHCC Q ss_conf 79----989999984885206 Q gi|254780807|r 150 LA----DLDTLLEYSFPWLYQ 166 (168) Q Consensus 150 ~a----~l~~ll~~~~pllk~ 166 (168) +- .+..+++=....||+ T Consensus 111 vl~~~~d~~~~l~e~~r~Lkp 131 (219) T 1vlm_A 111 TICFVDDPERALKEAYRILKK 131 (219) T ss_dssp CGGGSSCHHHHHHHHHHHEEE T ss_pred CHHHHCCHHHHHHHHHHHCCC T ss_conf 015534899999999998586 No 98 >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Probab=97.54 E-value=0.00026 Score=44.49 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=62.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH--HHCCCCCCEEEE Q ss_conf 234431111146773356565227554663478750000389999999997389809980426653--312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA--PQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~--~~~~~~~d~v~s 147 (168) ..+.+|+|||+|.|.-..-++=..| ..++.||.++.-+...++-....+.++.++..++++. ......||.|.. T Consensus 59 ~~g~rVLeiG~G~G~~a~~la~~~~----~~vt~id~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~ 134 (236) T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI----DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236) T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE----EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCCCCCEEE T ss_conf 4898499988885099999997299----779998089899999999887558862023200887620122356674452 Q ss_pred CCCC---------CHHHHHHHHHHHHCC Q ss_conf 1479---------989999984885206 Q gi|254780807|r 148 RALA---------DLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~a---------~l~~ll~~~~pllk~ 166 (168) =++. ....+++-..++||+ T Consensus 135 D~~~~~~~~~~~~~~~~~~~~~~RvLkP 162 (236) T 1zx0_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236) T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEE T ss_pred CCEEECCCEECCCCHHHHHHHHHHEECC T ss_conf 1162012201023468888998620678 No 99 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Probab=97.54 E-value=0.00029 Score=44.22 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=65.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH Q ss_conf 89864635643100123443111114677335656522755466347875000038999999999738980998042665 Q gi|254780807|r 55 WIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE 134 (168) Q Consensus 55 ~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~ 134 (168) +.+.+++.+. .+.+.+|+|||+|.|.-...|+= .+..|+.+|.+..-+.. + +-.-+.+++.+.+++ T Consensus 22 ~~~~~~~~l~----l~~~~~vLDvGcG~G~~~~~l~~-----~~~~v~gvD~s~~~~~~---a--~~~~~~~~~~~d~~~ 87 (261) T 3ege_A 22 IVNAIINLLN----LPKGSVIADIGAGTGGYSVALAN-----QGLFVYAVEPSIVMRQQ---A--VVHPQVEWFTGYAEN 87 (261) T ss_dssp HHHHHHHHHC----CCTTCEEEEETCTTSHHHHHHHT-----TTCEEEEECSCHHHHHS---S--CCCTTEEEECCCTTS T ss_pred HHHHHHHHCC----CCCCCEEEEECCCCCHHHHHHHH-----CCCEEEEEECCCCCCCC---C--CCCCCHHHHHHHHHH T ss_conf 9999999659----99969999964888899999997-----69989999744531210---0--012210133344543 Q ss_pred HHHCCCCCCEEEECCC----CCHHHHHHHHHHHHCC Q ss_conf 3312479869999147----9989999984885206 Q gi|254780807|r 135 APQMITTCDVISARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 135 ~~~~~~~~d~v~sRA~----a~l~~ll~~~~pllk~ 166 (168) ++-....||+|++..+ ..+...+.-....||+ T Consensus 88 l~~~~~~fD~v~~~~~l~~~~d~~~~l~e~~r~Lkp 123 (261) T 3ege_A 88 LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRD 123 (261) T ss_dssp CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBCS T ss_pred CCCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHCCC T ss_conf 025676013775401277468999999999998281 No 100 >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Probab=97.54 E-value=0.00064 Score=42.22 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=68.0 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCEEE Q ss_conf 123443111114677335656522755466347875000038999999999738980--998042665331247986999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~v~ 146 (168) +..+.+|+|||+|=|=|.+=+|--++ ..|+.++.+..-+.+.++-+++.++.. .+..... ....++||.|+ T Consensus 70 l~~g~rVLDiGCGwG~~a~~~a~~~g----~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~d~---~~~~~~fD~iv 142 (302) T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD----VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRIV 142 (302) T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC----CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCC---CCCCCCCCEEE T ss_conf 99989898857885399999999869----838998377889999999998740021233444043---23478867553 Q ss_pred ECC----CCC---------HHHHHHHHHHHHCCC Q ss_conf 914----799---------899999848852067 Q gi|254780807|r 147 ARA----LAD---------LDTLLEYSFPWLYQK 167 (168) Q Consensus 147 sRA----~a~---------l~~ll~~~~pllk~k 167 (168) |-- |.+ +..+++-+..+||+. T Consensus 143 Sie~~EHv~~~~~~~~~~~~~~~f~~i~~~LkPg 176 (302) T 3hem_A 143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD 176 (302) T ss_dssp EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT T ss_pred EEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC T ss_conf 1156887312210126889999999999856998 No 101 >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Probab=97.54 E-value=9.1e-05 Score=47.10 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=65.2 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCE Q ss_conf 0123443111114677335656522-755466347875000038999999999738980--9980426653312479869 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDV 144 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~ 144 (168) .++.+.+|+|||+|.|-..+.|+-. .|+. +|+.+|.+..-+...+.-+...++.+ ..+++.+++++. ...||. T Consensus 115 ~l~~g~~vLDvGcG~G~~~~~l~~~~~p~~---~v~gvD~S~~~l~~A~~~~~~~~l~~~~~~~~~d~~~l~~-~~~~d~ 190 (305) T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGV---QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-REGYDL 190 (305) T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTC---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-CSCEEE T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC-CCCCCE T ss_conf 099959999944747699999999718995---8999979888999997530220123222332000887424-664017 Q ss_pred EEECCCC----CH---HHHHHHHHHHHCC Q ss_conf 9991479----98---9999984885206 Q gi|254780807|r 145 ISARALA----DL---DTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~a----~l---~~ll~~~~pllk~ 166 (168) |++-.+. +. ..++.-....||+ T Consensus 191 iv~~~~~~~~~~~~~~~~~l~~~~~~Lkp 219 (305) T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQALKP 219 (305) T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHHEEE T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 99813421378466667789999854488 No 102 >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Probab=97.51 E-value=0.00041 Score=43.34 Aligned_cols=93 Identities=13% Similarity=-0.002 Sum_probs=66.8 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-C-EEEECHHHHHHHCCCCCCEE Q ss_conf 123443111114677335656522-75546634787500003899999999973898-0-99804266533124798699 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-G-KVFACRIQEAPQMITTCDVI 145 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~-~vi~~r~e~~~~~~~~~d~v 145 (168) +..+.+++|+|+|.|.-.+.+|=. .|+ ++|+.+|.++..+...++-.+..++. + ++....+.+.. ....||.| T Consensus 91 i~pG~rVLd~G~GsG~lt~~lar~~~~~---G~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~~~~-~~~~~D~V 166 (255) T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPE---GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-EEENVDHV 166 (255) T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC-CCCSEEEE T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCC---CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHHCCC-CCCCCCEE T ss_conf 8989989988866279999999743889---7799834999999999999997199814999946110355-55656579 Q ss_pred EECCCCCHHHHHHHHHHHHCC Q ss_conf 991479989999984885206 Q gi|254780807|r 146 SARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~l~~ll~~~~pllk~ 166 (168) +.-.-.|+ ..++-+.+.||+ T Consensus 167 ~ld~p~p~-~~l~~~~~~Lkp 186 (255) T 3mb5_A 167 ILDLPQPE-RVVEHAAKALKP 186 (255) T ss_dssp EECSSCGG-GGHHHHHHHEEE T ss_pred EEECCCHH-HHHHHHHHHCCC T ss_conf 99668567-899999985689 No 103 >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Probab=97.51 E-value=0.00023 Score=44.80 Aligned_cols=76 Identities=11% Similarity=-0.029 Sum_probs=58.2 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 23443111114677335656522755466347875000038999999999738980998042665331247986999914 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ..+.+|+|+|+|.|.=.++++ | +..|+.+|-+..-+.+.+......++++......+.+.+. ..+||+|++-. T Consensus 104 ~~~~~VLDlGCG~G~l~~~~~---~---~~~v~gvD~s~~~l~~ar~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~ 176 (253) T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G---IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-AEAGDLALIFK 176 (253) T ss_dssp CCCSEEEEETCTTTHHHHHHT---T---CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-CCBCSEEEEES T ss_pred CCCCEEEEECCCCCHHHHHHC---C---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCCC-CCCCCHHHHHC T ss_conf 999859996788889999976---8---9838999797999999999999829970488556222457-76744105424 Q ss_pred CCC Q ss_conf 799 Q gi|254780807|r 150 LAD 152 (168) Q Consensus 150 ~a~ 152 (168) +-. T Consensus 177 vl~ 179 (253) T 3frh_A 177 LLP 179 (253) T ss_dssp CHH T ss_pred HHH T ss_conf 486 No 104 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Probab=97.45 E-value=0.00057 Score=42.50 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=61.1 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH---HHHCCCCCCEE Q ss_conf 123443111114677335656522755466347875000038999999999738980998042665---33124798699 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE---APQMITTCDVI 145 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~---~~~~~~~~d~v 145 (168) ++.+.+|+|+|+|.|.....+|=..++ +.|+.||.++..+..+++.+.+.+. ...+...+.. .+.....+|++ T Consensus 55 ikpg~~VLDlG~GtG~~~~~la~~~~~---g~V~avD~s~~~i~~a~~~a~~~~n-~~~i~~~~~~~~~~~~~~~~v~~i 130 (210) T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDE---GIIYAVEYSAKPFEKLLELVRERNN-IIPLLFDASKPWKYSGIVEKVDLI 130 (210) T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTT---SEEEEECCCHHHHHHHHHHHHHCSS-EEEECSCTTCGGGTTTTCCCEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCEEEEE T ss_conf 899899999568888889999974369---8599996999999999977864897-079994056741122433213588 Q ss_pred EECCCCC---HHHHHHHHHHHHCC Q ss_conf 9914799---89999984885206 Q gi|254780807|r 146 SARALAD---LDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~---l~~ll~~~~pllk~ 166 (168) .+ .++- ...++.-+.++||+ T Consensus 131 ~~-~~~~~~~~~~~l~~~~~~LKp 153 (210) T 1nt2_A 131 YQ-DIAQKNQIEILKANAEFFLKE 153 (210) T ss_dssp EE-CCCSTTHHHHHHHHHHHHEEE T ss_pred EE-ECCCHHHHHHHHHHHHHHHCC T ss_conf 72-023615689999999985158 No 105 >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Probab=97.45 E-value=0.00044 Score=43.16 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=58.4 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) .+++|+|||+|.|.-...++=.. ..++.+|.++.-+.+.+ ++++-+..++++.+++... .++||+|++..+ T Consensus 42 ~~~~VLDiGCG~G~~~~~l~~~~-----~~v~giD~s~~~l~~a~---~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~v 112 (250) T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHF-----NDITCVEASEEAISHAQ---GRLKDGITYIHSRFEDAQL-PRRYDNIVLTHV 112 (250) T ss_dssp CSSCEEEESCTTSHHHHHHTTTC-----SCEEEEESCHHHHHHHH---HHSCSCEEEEESCGGGCCC-SSCEEEEEEESC T ss_pred CCCCEEEEECCCCHHHHHHHHHC-----CEEEEEECCHHHHHHHH---HHHHCCCCEEECCHHHCCC-CCCCCHHHHHHH T ss_conf 99939999289879999999509-----97999967168888999---8630354202022221266-556657886424 Q ss_pred C----CHHHHHH-HHHHHHCC Q ss_conf 9----9899999-84885206 Q gi|254780807|r 151 A----DLDTLLE-YSFPWLYQ 166 (168) Q Consensus 151 a----~l~~ll~-~~~pllk~ 166 (168) - .+..+++ +...+|++ T Consensus 113 leh~~dp~~~L~~i~~~~Lk~ 133 (250) T 2p7i_A 113 LEHIDDPVALLKRINDDWLAE 133 (250) T ss_dssp GGGCSSHHHHHHHHHHTTEEE T ss_pred HHHCCCHHHHHHHHHHHHCCC T ss_conf 640689999999999960299 No 106 >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Probab=97.43 E-value=0.00034 Score=43.77 Aligned_cols=91 Identities=11% Similarity=-0.046 Sum_probs=58.1 Q ss_pred CEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC Q ss_conf 30430899999898646356431001234431111146773356565227554663478750000389999999997389 Q gi|254780807|r 44 NLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA 123 (168) Q Consensus 44 NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L 123 (168) .|=-..|+.++-.+ ++.-+....-+ .+++|+|+|+|.|.=|+.++..-+ .+|+.+|....-+.-.++ .-- T Consensus 26 ~leQY~t~~~iaa~-~~~~~~~~gd~-~Gk~VLDlGcGtG~l~i~a~~~ga----~~V~~vDid~~a~~~a~~----N~~ 95 (200) T 1ne2_A 26 YLEQYPTDASTAAY-FLIEIYNDGNI-GGRSVIDAGTGNGILACGSYLLGA----ESVTAFDIDPDAIETAKR----NCG 95 (200) T ss_dssp ----CCCCHHHHHH-HHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHHTTB----SEEEEEESCHHHHHHHHH----HCT T ss_pred CCCCCCCCHHHHHH-HHHHHHHCCCC-CCCEEEECCCCHHHHHHHHHHCCC----CEEEEEECCHHHHHHHHH----HHH T ss_conf 71007998899999-99999866998-939899875751099999996799----879675089999999999----898 Q ss_pred CCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 809980426653312479869999 Q gi|254780807|r 124 RGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 124 ~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) +++++++++++++ .+||+|++ T Consensus 96 ~~~~~~~d~~~~~---~~fD~Vi~ 116 (200) T 1ne2_A 96 GVNFMVADVSEIS---GKYDTWIM 116 (200) T ss_dssp TSEEEECCGGGCC---CCEEEEEE T ss_pred HCCCEEEEHHHCC---CCCCEEEE T ss_conf 5785376521057---75488987 No 107 >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Probab=97.43 E-value=0.00039 Score=43.48 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=58.1 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHC-CCCCCEEEE Q ss_conf 1234431111146773356565227554663478750000389999999997389809980426653312-479869999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQM-ITTCDVISA 147 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~-~~~~d~v~s 147 (168) ++.+.+|+|+|+|.|....-+|=..|+ +.|+.||.++.-+..+++.+++.+. ...+...+...... ...+++.++ T Consensus 72 ikpg~~VLDlGcGtG~~~~~la~~~~~---G~V~aVDiSp~mi~~a~~~a~~~~n-i~~i~~d~~~~~~~~~~~~~vd~i 147 (230) T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADK---GIVYAIEYAPRIMRELLDACAEREN-IIPILGDANKPQEYANIVEKVDVI 147 (230) T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTT---SEEEEEESCHHHHHHHHHHTTTCTT-EEEEECCTTCGGGGTTTSCCEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCEEEEE T ss_conf 799999999679779899999975899---6599997998999999987764487-317984135864235666359999 Q ss_pred CC-CC---CHHHHHHHHHHHHCC Q ss_conf 14-79---989999984885206 Q gi|254780807|r 148 RA-LA---DLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA-~a---~l~~ll~~~~pllk~ 166 (168) -+ +. ....++.-+..+||+ T Consensus 148 ~~~~~~~~~~~~~l~~~~~~LKp 170 (230) T 1fbn_A 148 YEDVAQPNQAEILIKNAKWFLKK 170 (230) T ss_dssp EECCCSTTHHHHHHHHHHHHEEE T ss_pred EEECCCHHHHHHHHHHHHHHCCC T ss_conf 71012427899999998864589 No 108 >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Probab=97.43 E-value=0.001 Score=41.08 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=62.4 Q ss_pred CCCCCEEECCCCCHHHHHHHHC----CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-CCC---EEEECHHHHH------H Q ss_conf 3443111114677335656522----755466347875000038999999999738-980---9980426653------3 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQ----LSSIEGGLVNLIESKNKKASFLRYVVQKTA-ARG---KVFACRIQEA------P 136 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~----~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-L~~---~vi~~r~e~~------~ 136 (168) .+.+|+|||+|.|.-..+++=. +|.. ...++.||.+..-+...++...... +++ ......+|+. + T Consensus 52 ~~~~VLdiGcG~G~~~~~il~~l~~~~~~~-~~~~~~vD~s~~~l~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (292) T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292) T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCC-CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCHHHCC T ss_conf 998699987979977899999888744787-7759999898899999999988741335530110235165404422155 Q ss_pred HCCCCCCEEEECCC----CCHHHHHHHHHHHHCC Q ss_conf 12479869999147----9989999984885206 Q gi|254780807|r 137 QMITTCDVISARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 137 ~~~~~~d~v~sRA~----a~l~~ll~~~~pllk~ 166 (168) ....+||+|+|..+ .++...+.-...+|++ T Consensus 131 ~~~~~fD~I~~~~~l~~~~d~~~~l~~~~~~Lkp 164 (292) T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGT 164 (292) T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEE T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCC T ss_conf 6789867999768044310399999999997087 No 109 >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Probab=97.42 E-value=0.00029 Score=44.22 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=53.8 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 12344311111467733565652275546634787500003899999999973898099804266533124798699991 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +..+.+++|||||.|+-...+|-+- .+|+.+|....-+.+.++..... -+++++++..........+||.|+.- T Consensus 68 l~~g~~VLeIG~GsGy~ta~La~l~-----~~V~~vE~~~~~~~~A~~~~~~~-~nv~~~~gDg~~g~~~~~pfD~Iiv~ 141 (231) T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV-----DKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTLGYEEEKPYDRVVVW 141 (231) T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-----SEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGGCCGGGCCEEEEEES T ss_pred CCCCCEEEEECCCCCHHHHHHHHHC-----CEEEEECCCHHHHHHHHHHHCCC-CEEEEEECCHHCCCCCCCCEEEEEEC T ss_conf 9997989997798778899999856-----78767628999999999874068-62689866320287346985799985 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) |.. T Consensus 142 ~~~ 144 (231) T 1vbf_A 142 ATA 144 (231) T ss_dssp SBB T ss_pred CCH T ss_conf 757 No 110 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Probab=97.42 E-value=0.00043 Score=43.18 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=66.9 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHH----HHCCC Q ss_conf 0012344311111467733565652275546634787500003899999999973898--09980426653----31247 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEA----PQMIT 140 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~----~~~~~ 140 (168) .++..+.+++|+|+|.|--++.+|-. ...+|+.+|.++..+...++-.+..+++ ..++.+.+.+. ..... T Consensus 213 ~~~~~g~~VLDl~~g~G~~si~aa~~----ga~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~~~D~~~~l~~~~~~~~ 288 (396) T 2as0_A 213 KWVQPGDRVLDVFTYTGGFAIHAAIA----GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGE 288 (396) T ss_dssp GGCCTTCEEEETTCTTTHHHHHHHHT----TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTC T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCC T ss_conf 75158976988178778889999977----99746887188889999999999839974556996629888788886078 Q ss_pred CCCEEEECC--CCC-----------HHHHHHHHHHHHCC Q ss_conf 986999914--799-----------89999984885206 Q gi|254780807|r 141 TCDVISARA--LAD-----------LDTLLEYSFPWLYQ 166 (168) Q Consensus 141 ~~d~v~sRA--~a~-----------l~~ll~~~~pllk~ 166 (168) +||+|++-. |++ ...++..+.++|++ T Consensus 289 ~FD~Ii~DpP~~~~~~~~~~~~~~~y~~l~~~a~~lLkp 327 (396) T 2as0_A 289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD 327 (396) T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE T ss_pred CCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 998799765121156556789999999999999955588 No 111 >3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* Probab=97.38 E-value=0.00069 Score=42.01 Aligned_cols=94 Identities=17% Similarity=0.031 Sum_probs=63.7 Q ss_pred CCCCCCCEEECCCCCHHHHHHHH-CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEE--ECHHHHHHHCCCCCCEE Q ss_conf 12344311111467733565652-2755466347875000038999999999738980998--04266533124798699 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSI-QLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVF--ACRIQEAPQMITTCDVI 145 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI-~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi--~~r~e~~~~~~~~~d~v 145 (168) ++++.+|+|+|+|.|.....+|= +-|+ +.|+.+|.++..+..+++..++.+....+. ....++.+.....+|+| T Consensus 74 lkpG~~VLdLG~G~G~~~~~la~~Vg~~---G~V~aVD~s~~~l~~a~~~a~~~~n~~~v~~d~~~~~~~~~~~~~vd~i 150 (232) T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELN---GKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVL 150 (232) T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTT---SEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCEEEEE T ss_conf 8999999996771889999999971568---7699997999999999976565467763010146754537777369999 Q ss_pred EECCCCCH---HHHHHHHHHHHCC Q ss_conf 99147998---9999984885206 Q gi|254780807|r 146 SARALADL---DTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~l---~~ll~~~~pllk~ 166 (168) .+ .++.. ..++.-+..+||+ T Consensus 151 ~~-~~~~~~~~~~~l~~~~~~LKp 173 (232) T 3id6_C 151 YV-DIAQPDQTDIAIYNAKFFLKV 173 (232) T ss_dssp EE-CCCCTTHHHHHHHHHHHHEEE T ss_pred EE-ECCCCCHHHHHHHHHHHHCCC T ss_conf 98-525732199999999851589 No 112 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Probab=97.38 E-value=0.00052 Score=42.75 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=60.2 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) .+++|+|+|+|.|.-...++ .+ +.+++.+|.++.-+++.+ ++++-+..++++.++..+. .++||+|+|.++ T Consensus 45 ~~~~vLDiGcG~G~~~~~l~--~~---~~~v~gvD~S~~mi~~a~---~k~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~ 115 (220) T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLL--LA---GRTVYGIEPSREMRMIAK---EKLPKEFSITEGDFLSFEV-PTSIDTIVSTYA 115 (220) T ss_dssp CCSEEEEECCTTSHHHHHHH--HT---TCEEEEECSCHHHHHHHH---HHSCTTCCEESCCSSSCCC-CSCCSEEEEESC T ss_pred CCCEEEEECCCCCHHHHHHH--HC---CCEEEEEECCHHHHHHHH---HCCCCCCHHHHHHHHHHCC-CCCCCEEEEHHH T ss_conf 97939997287859999999--77---998999958357789987---4256541033444544401-776488976344 Q ss_pred CCH------HHHHHHHHHHHCC Q ss_conf 998------9999984885206 Q gi|254780807|r 151 ADL------DTLLEYSFPWLYQ 166 (168) Q Consensus 151 a~l------~~ll~~~~pllk~ 166 (168) -.. ..++.-....||+ T Consensus 116 l~h~~~~~~~~~l~~i~~~Lk~ 137 (220) T 3hnr_A 116 FHHLTDDEKNVAIAKYSQLLNK 137 (220) T ss_dssp GGGSCHHHHHHHHHHHHHHSCT T ss_pred HHHCCCHHHHHHHHHHHHHCCC T ss_conf 8859937899999999998583 No 113 >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Probab=97.36 E-value=0.00068 Score=42.07 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=59.3 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC Q ss_conf 23443111114677335656522755466347875000038999999999738980-99804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ..+.++++||||.|+-.-++|-+- ..++.+|....-..+-+...+.++..| .++++...+-.....+||.|..= T Consensus 76 ~~g~~VLeIGsGtGY~tAlla~l~-----~~v~~ve~~~~~~~~a~~~~~~~~~~nv~~~~gdg~~g~~~~~pyD~Iiv~ 150 (210) T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV-----QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVT 150 (210) T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-----SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEES T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEE T ss_conf 899879996784069999999862-----832545422289999999988626667179985777677556980379996 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) |-. T Consensus 151 ~a~ 153 (210) T 3lbf_A 151 AAP 153 (210) T ss_dssp SBC T ss_pred ECC T ss_conf 412 No 114 >1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Probab=97.35 E-value=0.00034 Score=43.79 Aligned_cols=85 Identities=12% Similarity=0.016 Sum_probs=57.9 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCC---CCEEEEEHHHHHHHHHHHHHHHH-----HCCCC-EEEECHHHHHHHC Q ss_conf 012344311111467733565652275546---63478750000389999999997-----38980-9980426653312 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIE---GGLVNLIESKNKKASFLRYVVQK-----TAARG-KVFACRIQEAPQM 138 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~---~~~v~Lves~~KK~~FL~~~~~~-----L~L~~-~vi~~r~e~~~~~ 138 (168) .++.+.+++|||||.|+-.-.+|-+..... ..+|+.+|..+.-+.+.++..++ ++..| .++++...+.... T Consensus 81 ~l~pg~~VLeIG~GtGy~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~A~~~l~~~~~~~l~~~nv~~~~~D~~~g~~~ 160 (227) T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227) T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCCCCCCC T ss_conf 38999889995799779999999985331577766899994789999999999976051020566369997784557765 Q ss_pred CCCCCEEEECCCCC Q ss_conf 47986999914799 Q gi|254780807|r 139 ITTCDVISARALAD 152 (168) Q Consensus 139 ~~~~d~v~sRA~a~ 152 (168) ..+||.|.+.|-.+ T Consensus 161 ~~~fD~I~v~~a~~ 174 (227) T 1r18_A 161 NAPYNAIHVGAAAP 174 (227) T ss_dssp GCSEEEEEECSCBS T ss_pred CCCCCEEEEEECHH T ss_conf 56523688851155 No 115 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Probab=97.35 E-value=0.00023 Score=44.76 Aligned_cols=75 Identities=9% Similarity=-0.046 Sum_probs=54.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389--8099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ..++|+|+|+|.|.-.+.+|= .+..|+.+|-+..-+...++-....+. +++++++.+.+.. ....||+|+++ T Consensus 66 ~~~rVLdlGCG~G~~~~~la~-----~g~~V~giD~S~~ai~~a~~~~~~~~~~~~v~~~~~D~~~~~-~~~~fD~i~~~ 139 (235) T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS-----PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDY 139 (235) T ss_dssp CCEEEEEETCTTCHHHHHHCB-----TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEE T ss_pred CCCCEEEECCCCCHHHHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHC-CCCCCCEEEEE T ss_conf 999489943888789999986-----698799974669999999998764154421002325676717-55664579999 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) ++- T Consensus 140 ~~~ 142 (235) T 3lcc_A 140 VFF 142 (235) T ss_dssp SST T ss_pred EEE T ss_conf 871 No 116 >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46 Probab=97.35 E-value=0.00076 Score=41.78 Aligned_cols=86 Identities=17% Similarity=0.028 Sum_probs=61.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-C-EEEECHHHHH----HHCCCCCC Q ss_conf 2344311111467733565652275546634787500003899999999973898-0-9980426653----31247986 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-G-KVFACRIQEA----PQMITTCD 143 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~-~vi~~r~e~~----~~~~~~~d 143 (168) ..+.+|+|++||.|-=|+-.+- ....+|+.||.+.+-+..+++-++.++.. + +++++.+.+. .+...+|| T Consensus 43 ~~~~~vLDlf~GsG~~~~ea~s----rGa~~v~~Ve~~~~~~~~~~~N~~~~~~~~~~~i~~~d~~~~l~~~~~~~~~fD 118 (187) T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS----RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD 118 (187) T ss_dssp CSSCEEEETTCTTCHHHHHHHH----TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE T ss_pred CCCCEEEECCCCCCHHHHHHHH----CCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCC T ss_conf 5999899988873789999997----588835899942467767665554202456417886107888776430267653 Q ss_pred EEEEC---CCCCHHHHHHH Q ss_conf 99991---47998999998 Q gi|254780807|r 144 VISAR---ALADLDTLLEY 159 (168) Q Consensus 144 ~v~sR---A~a~l~~ll~~ 159 (168) +|..= +-.....+++. T Consensus 119 lIflDPPY~~~~~~~~l~~ 137 (187) T 2fhp_A 119 LVLLDPPYAKQEIVSQLEK 137 (187) T ss_dssp EEEECCCGGGCCHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 5997898753179999999 No 117 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Probab=97.34 E-value=0.0001 Score=46.79 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=43.7 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC Q ss_conf 123443111114677335656522755466347875000038999999999738980 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG 125 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~ 125 (168) ...+.+|+|||+|.|...+-+|-.+|+.+ |+.||-+..-+...+.-++...+++ T Consensus 44 ~~~~~~vLDiGCG~G~~~i~la~~~~~~~---v~GiDis~~~i~~A~~n~~~~~~~~ 97 (292) T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSR---MVGLDIDSRLIHSARQNIRHYLSEE 97 (292) T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSE---EEEEESCHHHHHHHHHTC------- T ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 16999599985797899999998789988---9997098899999999999830224 No 118 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Probab=97.33 E-value=0.00036 Score=43.64 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=59.4 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) .+.+|+|||+|.|.-...++= .+..|+.+|.+..-+...+ +.+ -+.....+.+++.+. ..+||+|+|..+ T Consensus 57 ~g~~VLDiGcG~G~~~~~la~-----~~~~v~giD~s~~ml~~a~---~~~-~~~~~~~~~~~~~~~-~~~fD~v~~~~~ 126 (279) T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ-----SGAEVLGTDNAATMIEKAR---QNY-PHLHFDVADARNFRV-DKPLDAVFSNAM 126 (279) T ss_dssp TTCEEEEETCTTSHHHHHHHH-----TTCEEEEEESCHHHHHHHH---HHC-TTSCEEECCTTTCCC-SSCEEEEEEESC T ss_pred CCCEEEEECCCCCHHHHHHHH-----CCCEEEEEECHHHHHHHHH---HHC-CCCCEEEHHHCCCCC-CCCCCEEEEEEC T ss_conf 969999935858599999996-----4998999916388999998---616-543111000001356-765538977520 Q ss_pred ----CCHHHHHHHHHHHHCC Q ss_conf ----9989999984885206 Q gi|254780807|r 151 ----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 151 ----a~l~~ll~~~~pllk~ 166 (168) ..+..++.-....|++ T Consensus 127 l~~~~d~~~~l~~~~~~lkp 146 (279) T 3ccf_A 127 LHWVKEPEAAIASIHQALKS 146 (279) T ss_dssp GGGCSCHHHHHHHHHHHEEE T ss_pred CCCCCCHHHHHHHHHHHCCC T ss_conf 14567889999999997189 No 119 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=97.32 E-value=0.0012 Score=40.57 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=58.7 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) .+++|+|+|+|.|.-...++= . +..|+.+|.++.-+...+ ++ .-+.++++..+++++.....||+|++..+ T Consensus 41 ~~grVLDiGcG~G~~~~~la~--~---g~~v~gvD~S~~~l~~ar---~~-~~~~~~~~~d~~~l~~~~~~fD~I~~~~v 111 (203) T 3h2b_A 41 VDGVILDVGSGTGRWTGHLAS--L---GHQIEGLEPATRLVELAR---QT-HPSVTFHHGTITDLSDSPKRWAGLLAWYS 111 (203) T ss_dssp CCSCEEEETCTTCHHHHHHHH--T---TCCEEEECCCHHHHHHHH---HH-CTTSEEECCCGGGGGGSCCCEEEEEEESS T ss_pred CCCCEEEECCCCCHHHHHHHH--C---CCEEEEEECCHHHHHHHH---HC-CCCCEEEECCCCCCCCCCCCCCEEEEECC T ss_conf 998499973788799999997--7---996999969788999997---44-88734998621012234566668999465 Q ss_pred C------CHHHHHHHHHHHHCC Q ss_conf 9------989999984885206 Q gi|254780807|r 151 A------DLDTLLEYSFPWLYQ 166 (168) Q Consensus 151 a------~l~~ll~~~~pllk~ 166 (168) - .+..+++-....||+ T Consensus 112 l~h~~~~d~~~~l~~~~~~Lkp 133 (203) T 3h2b_A 112 LIHMGPGELPDALVALRMAVED 133 (203) T ss_dssp STTCCTTTHHHHHHHHHHTEEE T ss_pred CCCCCHHHHHHHHHHHHHHCCC T ss_conf 1149979999999999987689 No 120 >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Probab=97.31 E-value=0.00021 Score=44.98 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=65.2 Q ss_pred CCCHHHHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCC Q ss_conf 99989999999999-99998463213043089999989864635643100123443111114677335656522755466 Q gi|254780807|r 20 NVSRETLEKLEYFY-FLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEG 98 (168) Q Consensus 20 ~ls~eq~~~l~~y~-~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~ 98 (168) +-|+|..+++..-+ ..-..|++. +++. +.+...+..+.+ .++.+.+|+|||+|.|.-.+.|+= .+ T Consensus 5 ~~~~~~~d~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~------~l~pg~rVLDvGCGtG~~a~~La~-----~g 70 (226) T 3m33_A 5 NHSRESYDRLARELGGYRHPWARV--LSGP-DPELTFDLWLSR------LLTPQTRVLEAGCGHGPDAARFGP-----QA 70 (226) T ss_dssp ---CHHHHHHHHHHTTTSCCSCCE--ESSS-CTTHHHHHHHHH------HCCTTCEEEEESCTTSHHHHHHGG-----GS T ss_pred HHHHHHHHHHHHHHCCCCCHHHHH--CCCC-CHHHHHHHHHHH------HCCCCCEEEEECCCCCHHHHHHHC-----CC T ss_conf 367899999998726653536675--0598-867999999995------189999799988465864577751-----68 Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH-HHH-CCCCCCEEEECCCCCHHHHHH Q ss_conf 347875000038999999999738980998042665-331-247986999914799899999 Q gi|254780807|r 99 GLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE-APQ-MITTCDVISARALADLDTLLE 158 (168) Q Consensus 99 ~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~-~~~-~~~~~d~v~sRA~a~l~~ll~ 158 (168) ..|+.+|.++.-+...++ .. -+..++...+.+ ++. ....||+|+|+ +.+...+.+ T Consensus 71 ~~V~giD~S~~mi~~Ar~---~~-~~~~~~~~~~~~~lp~~~~~~FD~V~s~-~~~~~~l~e 127 (226) T 3m33_A 71 ARWAAYDFSPELLKLARA---NA-PHADVYEWNGKGELPAGLGAPFGLIVSR-RGPTSVILR 127 (226) T ss_dssp SEEEEEESCHHHHHHHHH---HC-TTSEEEECCSCSSCCTTCCCCEEEEEEE-SCCSGGGGG T ss_pred CEEEECCCCHHHHHHHHH---HC-CCCCEEEEECCCCCCCCCCCCEEEEEEC-CCHHHHHHH T ss_conf 689965799999999998---58-9997899746667988789964699976-899999999 No 121 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=97.31 E-value=0.00057 Score=42.49 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=63.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH-HHHCCCCCCEEEEC Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665-33124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE-APQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~-~~~~~~~~d~v~sR 148 (168) .+.+++|+.+|.|-=||- |+-+. ..+|+.||.+.+-+..+++-+..++.++ ++++..+.+ +.....+||+|..= T Consensus 54 ~~~~vLDLfaGsG~lgiE-alsRG---a~~v~fVE~~~~a~~~l~~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIflD 129 (202) T 2fpo_A 54 VDAQCLDCFAGSGALGLE-ALSRY---AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD 129 (202) T ss_dssp TTCEEEETTCTTCHHHHH-HHHTT---CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC T ss_pred CCCEEEECCCCCCHHHHH-HHCCC---CCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCCEEEEC T ss_conf 898699888785588999-87079---98868999703335678878987463553599532456554127766689976 Q ss_pred C---CCCHHHHHHHH Q ss_conf 4---79989999984 Q gi|254780807|r 149 A---LADLDTLLEYS 160 (168) Q Consensus 149 A---~a~l~~ll~~~ 160 (168) - -.....+++.. T Consensus 130 PPY~~~~~~~~l~~l 144 (202) T 2fpo_A 130 PPFRRGLLEETINLL 144 (202) T ss_dssp CSSSTTTHHHHHHHH T ss_pred CCCCCCHHHHHHHHH T ss_conf 998754599999999 No 122 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Probab=97.29 E-value=0.0015 Score=40.07 Aligned_cols=90 Identities=14% Similarity=0.007 Sum_probs=56.0 Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH-H-HHCCCCC Q ss_conf 3100123443111114677335656522755466347875000038999999999738980998042665-3-3124798 Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE-A-PQMITTC 142 (168) Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~-~-~~~~~~~ 142 (168) +.++++.+++|+|||+|.|.-.-. +.. .+..++.+|.+.+-+.+.+. + ...+...+++ . +-...+| T Consensus 35 ~i~~~~~~~~vLDiGCG~G~~~~~--l~~---~g~~v~GiD~s~~~i~~a~~-----~--~~~~~~~~~~~~~~~~~~~f 102 (240) T 3dli_A 35 YIPYFKGCRRVLDIGCGRGEFLEL--CKE---EGIESIGVDINEDMIKFCEG-----K--FNVVKSDAIEYLKSLPDKYL 102 (240) T ss_dssp GGGGTTTCSCEEEETCTTTHHHHH--HHH---HTCCEEEECSCHHHHHHHHT-----T--SEEECSCHHHHHHTSCTTCB T ss_pred HHHCCCCCCEEEEECCCCCHHHHH--HHH---CCCEEEEEECCHHHHHHHHH-----H--CCCCHHHHHHHHCCCCCCCC T ss_conf 752268999699973878599999--997---79959999677078788765-----1--11001006664023543476 Q ss_pred CEEEECCCC------CHHHHHHHHHHHHCC Q ss_conf 699991479------989999984885206 Q gi|254780807|r 143 DVISARALA------DLDTLLEYSFPWLYQ 166 (168) Q Consensus 143 d~v~sRA~a------~l~~ll~~~~pllk~ 166 (168) |+|++..+- .+..+++-....||+ T Consensus 103 D~V~~~~vleH~~~~~~~~~l~e~~r~Lkp 132 (240) T 3dli_A 103 DGVMISHFVEHLDPERLFELLSLCYSKMKY 132 (240) T ss_dssp SEEEEESCGGGSCGGGHHHHHHHHHHHBCT T ss_pred CEEEEECEEEECCHHHHHHHHHHHHHHCCC T ss_conf 588762101206827899999999986084 No 123 >3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A* Probab=97.27 E-value=0.0019 Score=39.43 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=70.6 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHH-HH-----CCCC Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653-31-----2479 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEA-PQ-----MITT 141 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~-~~-----~~~~ 141 (168) .++++++++|||.|.-.+-+|=+.|. .+.++.+|...+.....++.+++.++. ++++.+.+.+. ++ .... T Consensus 57 ~kpk~iLEiGt~~G~Stl~la~al~~--~g~v~~id~~~~~~~~ar~~~~~agl~~~I~l~~gd~~e~l~~l~~~~~~~~ 134 (221) T 3hvi_A 57 YSPSLVLELGAYCGYSAVRMARLLQP--GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221) T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCT--TCEEEEECCCHHHHHHHHHHHHHHTCTTTEEEECSCHHHHGGGHHHHHCCSC T ss_pred CCCCEEEEEECCCHHHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCC T ss_conf 19999999714742999999985799--9789999888412589999999759977415883779999998775347653 Q ss_pred CCEEEECCCCCHHH---HHHHHHHHHCC Q ss_conf 86999914799899---99984885206 Q gi|254780807|r 142 CDVISARALADLDT---LLEYSFPWLYQ 166 (168) Q Consensus 142 ~d~v~sRA~a~l~~---ll~~~~pllk~ 166 (168) ||+|..=+...... .+..+.++|++ T Consensus 135 fD~vfiD~~~~~~~~~~~~~~~~~lL~p 162 (221) T 3hvi_A 135 LDMVFLDHWKDRYLPDTLLLEKCGLLRK 162 (221) T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCCCT T ss_pred EEEEEECCCCHHCCCHHHHHHHHCCCCC T ss_conf 2589974670202469999998488188 No 124 >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Probab=97.25 E-value=0.00084 Score=41.54 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=57.6 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEE Q ss_conf 00123443111114677335656522755466347875000038999999999738980998042665331247986999 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168) ..++.+.+|+|||+|.|.....++=. +..|+.+|.+..-+ +.+.++.+.++.. ...++.. ...+||.|+ T Consensus 39 ~~l~~~~~VLDvGCG~G~~~~~l~~~-----g~~v~gvD~s~~~i---~~a~~~~~~~~~~--~~~~~~~-~~~~fD~I~ 107 (211) T 3e23_A 39 GELPAGAKILELGCGAGYQAEAMLAA-----GFDVDATDGSPELA---AEASRRLGRPVRT--MLFHQLD-AIDAYDAVW 107 (211) T ss_dssp TTSCTTCEEEESSCTTSHHHHHHHHT-----TCEEEEEESCHHHH---HHHHHHHTSCCEE--CCGGGCC-CCSCEEEEE T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEECCHHHH---HHHHHHCCCCCEE--EEEECCC-CCCCCCHHH T ss_conf 61899898999868886999999975-----99232341469999---9999860886201--1220255-322331365 Q ss_pred ECCCCC------HHHHHHHHHHHHCC Q ss_conf 914799------89999984885206 Q gi|254780807|r 147 ARALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~a~------l~~ll~~~~pllk~ 166 (168) +.++-. ...++.-...+|++ T Consensus 108 ~~~~l~~l~~~~~~~~~~~~~~~Lkp 133 (211) T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKP 133 (211) T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEE T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 44346518978999999999997396 No 125 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Probab=97.25 E-value=0.0012 Score=40.59 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=64.9 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHHHHCCCCCCE Q ss_conf 00123443111114677335656522755466347875000038999999999738980--9980426653312479869 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEAPQMITTCDV 144 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~~~~~~~~d~ 144 (168) .+.+.+.+++|+|+|.|--...++-..+. .+.+++.+|.++.-+...++-.+..+.+. ...+..+.+.+ ..++|+ T Consensus 54 ~~~~~~~~vLDlGcGtG~~~~~l~~~~~~-~~~~v~giD~S~~ml~~A~~k~~~~~~~~~~~~~~~d~~~~~--~~~~d~ 130 (244) T 1im8_A 54 RFVTADSNVYDLGCSRGAATLSARRNINQ-PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASM 130 (244) T ss_dssp HHCCTTCEEEEESCTTCHHHHHHHHTCCC-SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEE T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCE T ss_conf 86799798999200222889998863369-980899976978999999864431065432110123210001--243212 Q ss_pred EEECCC-C-----CHHHHHHHHHHHHCC Q ss_conf 999147-9-----989999984885206 Q gi|254780807|r 145 ISARAL-A-----DLDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~-a-----~l~~ll~~~~pllk~ 166 (168) +++=-+ . ....+++-....||+ T Consensus 131 i~~~~~l~~~~~~d~~~~l~~i~~~Lkp 158 (244) T 1im8_A 131 VILNFTLQFLPPEDRIALLTKIYEGLNP 158 (244) T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEE T ss_pred EEEEEEEEECCHHHHHHHHHHHHHHCCC T ss_conf 6886422305617889999999851789 No 126 >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Probab=97.24 E-value=0.0013 Score=40.41 Aligned_cols=110 Identities=13% Similarity=0.028 Sum_probs=72.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--E Q ss_conf 89999989864635643100123443111114677335656522755466347875000038999999999738980--9 Q gi|254780807|r 49 STVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--K 126 (168) Q Consensus 49 ~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~ 126 (168) .+.++. +.+-+|-+.-.--+..+.+|+|||+|-|=|.+-+|=.+ +..|+-+..+..-+.+.++-+.+.++.. . T Consensus 43 ~tL~eA-Q~~k~~~l~~~l~l~~G~~VLDiGCG~G~~a~~~A~~~----g~~v~git~s~~q~~~a~~~~~~~~~~~~~~ 117 (287) T 1kpg_A 43 MTLQEA-QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY----DVNVVGLTLSKNQANHVQQLVANSENLRSKR 117 (287) T ss_dssp CCHHHH-HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEE T ss_pred CCHHHH-HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHCCCCHHH T ss_conf 999999-99999999997199999989996885259999999967----9846999689999999999987614540157 Q ss_pred EEECHHHHHHHCCCCCCEEEECCC------CCHHHHHHHHHHHHCC Q ss_conf 980426653312479869999147------9989999984885206 Q gi|254780807|r 127 VFACRIQEAPQMITTCDVISARAL------ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 127 vi~~r~e~~~~~~~~~d~v~sRA~------a~l~~ll~~~~pllk~ 166 (168) +.....++. .++||.|+|=-. .....+++-+..+||+ T Consensus 118 ~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp 160 (287) T 1kpg_A 118 VLLAGWEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA 160 (287) T ss_dssp EEESCGGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT T ss_pred HHHHHHHHC---CCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCC T ss_conf 887436641---3776405553227750747799999999974699 No 127 >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A* Probab=97.24 E-value=0.0011 Score=40.95 Aligned_cols=89 Identities=8% Similarity=0.052 Sum_probs=65.5 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEE Q ss_conf 12344311111467733565652275546634787500003899999999973898--0998042665331247986999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~ 146 (168) ...+..++|+|+|-|-=+|+ +. +...|+.+|.++.-+..+++-++..++. .+++++.+.+. ..+||.|+ T Consensus 193 ~~~~~~vlD~f~g~G~~~i~--~~----~~~~v~a~d~n~~a~~~~~~N~~~N~~~~~v~~~~~D~~~~---~~~~D~Ii 263 (336) T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA--CK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV---DVKGNRVI 263 (336) T ss_dssp CCTTCEEEETTCTTSHHHHH--TT----TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC---CCCEEEEE T ss_pred CCCCCEEEEECCCCCHHHHH--CC----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC---CCCCCEEE T ss_conf 17898899965764676653--13----55169999799999999999999829987589995753454---56874999 Q ss_pred ECCCCCHHHHHHHHHHHHCC Q ss_conf 91479989999984885206 Q gi|254780807|r 147 ARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~a~l~~ll~~~~pllk~ 166 (168) +=--..-..+++-+.++|++ T Consensus 264 ~~~P~~~~~~l~~a~~~l~~ 283 (336) T 2yx1_A 264 MNLPKFAHKFIDKALDIVEE 283 (336) T ss_dssp ECCTTTGGGGHHHHHHHEEE T ss_pred ECCHHHHHHHHHHHHHHHCC T ss_conf 65804669999999998367 No 128 >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Probab=97.23 E-value=0.0017 Score=39.71 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=70.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC---CEEEECHHHHHH----HCCCCCC Q ss_conf 344311111467733565652275546634787500003899999999973898---099804266533----1247986 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR---GKVFACRIQEAP----QMITTCD 143 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~---~~vi~~r~e~~~----~~~~~~d 143 (168) .+.+++|++||.|--|+..|-. ...+|+.||.+..-+...++-.+..+++ .++++..+.+.. ....+|| T Consensus 220 ~g~rVLdlf~~tG~~si~Aa~~----GA~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~i~~d~~~~l~~~~~~~~~fD 295 (396) T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396) T ss_dssp TTCEEEEESCTTCSHHHHHHHT----TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEE T ss_pred CCCEEEECCCCCCHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCC T ss_conf 9986875388668899999977----997599998989999999999998299843457894229999999987535999 Q ss_pred EEEE-------------CCCCCHHHHHHHHHHHHCC Q ss_conf 9999-------------1479989999984885206 Q gi|254780807|r 144 VISA-------------RALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 144 ~v~s-------------RA~a~l~~ll~~~~pllk~ 166 (168) +|+. +|......++..+.++|++ T Consensus 296 ~IilDPP~f~~~~~~~~~a~~~y~~l~~~a~~lL~p 331 (396) T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE 331 (396) T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 899878322456166788999999999999987289 No 129 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Probab=97.22 E-value=0.0012 Score=40.59 Aligned_cols=101 Identities=16% Similarity=-0.030 Sum_probs=65.2 Q ss_pred HHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEECHHHHH-HHC Q ss_conf 5643100123443111114677335656522755466347875000038999999999738980--9980426653-312 Q gi|254780807|r 62 SLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFACRIQEA-PQM 138 (168) Q Consensus 62 Sl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~r~e~~-~~~ 138 (168) +..+-.+++++.+|+|+|+|.|-.-..++=. ....|+.+|.+..-+...++-....+.+. ..+.+.+... ... T Consensus 55 ~~Li~~~~~~~~~VLDlGCG~G~~~~~~~~~----~~~~v~GiD~S~~~l~~a~~r~~~~~~~~~~~f~~~d~~~~~~~~ 130 (298) T 1ri5_A 55 ACLIRLYTKRGDSVLDLGCGKGGDLLKYERA----GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL 130 (298) T ss_dssp HHHHHHHCCTTCEEEEETCTTTTTHHHHHHH----TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCC T ss_conf 9999984899598999637087899999966----998588758999999999999875288752377864565521013 Q ss_pred CCCCCEEEECCCCC--------HHHHHHHHHHHHCC Q ss_conf 47986999914799--------89999984885206 Q gi|254780807|r 139 ITTCDVISARALAD--------LDTLLEYSFPWLYQ 166 (168) Q Consensus 139 ~~~~d~v~sRA~a~--------l~~ll~~~~pllk~ 166 (168) ..+||+|++..+.. +..+++-....|++ T Consensus 131 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp 166 (298) T 1ri5_A 131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166 (298) T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE T ss_pred CCCCCEEEECCCEEECCCCHHHHHHHHHHHHHHCCC T ss_conf 777558997365444278788999999999986689 No 130 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Probab=97.18 E-value=0.00098 Score=41.14 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=60.9 Q ss_pred CCCCCCCEEECCCCCHHHHHHH-HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH---HHHHCCCCCCE Q ss_conf 1234431111146773356565-2275546634787500003899999999973898099804266---53312479869 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITS-IQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ---EAPQMITTCDV 144 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~la-I~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e---~~~~~~~~~d~ 144 (168) +.++.+|+|+|+|.|.....+| ++-|+ +.|+.+|.++....-+++.+++.+. ...+...+. ..+.....+|+ T Consensus 71 i~pG~~VLDlG~G~G~~~~~la~~vg~~---G~V~avD~s~~~l~~l~~~~~~~~n-i~~v~~da~~~~~~~~~~~~vd~ 146 (227) T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWE---GKIFGIEFSPRVLRELVPIVEERRN-IVPILGDATKPEEYRALVPKVDV 146 (227) T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHSSCTT-EEEEECCTTCGGGGTTTCCCEEE T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHHHCCCCCCEEEE T ss_conf 8999999997178788999999984899---6699998999999999987876698-34999876794465445671999 Q ss_pred EEECC--CCCHHHHHHHHHHHHCC Q ss_conf 99914--79989999984885206 Q gi|254780807|r 145 ISARA--LADLDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA--~a~l~~ll~~~~pllk~ 166 (168) +.+=- ......++.-+..+||+ T Consensus 147 v~~~~~~~~~~~~~l~~~~~~Lkp 170 (227) T 1g8a_A 147 IFEDVAQPTQAKILIDNAEVYLKR 170 (227) T ss_dssp EEECCCSTTHHHHHHHHHHHHEEE T ss_pred EEEEECCCCCHHHHHHHHHHHCCC T ss_conf 997600054068999999984599 No 131 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Probab=97.13 E-value=0.00092 Score=41.29 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=56.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECCC Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653312479869999147 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL 150 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA~ 150 (168) ++++|+|||+|.|.-...++=. ...|+.+|.+..-+...++ ++++........+++ ...||+|++..+ T Consensus 17 ~~~~VLDiGcG~G~~~~~l~~~-----~~~v~gvD~s~~~i~~a~~-----~~~~~~~~~~~~~l~--~~~fD~i~~~~~ 84 (170) T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEF-----ATKLYCIDINVIALKEVKE-----KFDSVITLSDPKEIP--DNSVDFILFANS 84 (170) T ss_dssp CCEEEEEETCTTCTTHHHHHTT-----EEEEEEECSCHHHHHHHHH-----HCTTSEEESSGGGSC--TTCEEEEEEESC T ss_pred CCCEEEEEECCCCHHHHHHHHC-----CCEEEEEECCCCCCCEECC-----CCEEEEEEECCCCCC--CCCEEEEEEEEE T ss_conf 9697999808997999999962-----9989999456420100012-----210355320012378--785789998503 Q ss_pred ----CCHHHHHHHHHHHHCC Q ss_conf ----9989999984885206 Q gi|254780807|r 151 ----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 151 ----a~l~~ll~~~~pllk~ 166 (168) .....+++-..+.||+ T Consensus 85 l~~~~~~~~~l~~i~r~Lkp 104 (170) T 3i9f_A 85 FHDMDDKQHVISEVKRILKD 104 (170) T ss_dssp STTCSCHHHHHHHHHHHEEE T ss_pred EECCCCHHHHHHHHHHHCCC T ss_conf 34177999999999997587 No 132 >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.79A {Cyanidioschyzon merolae strain 10D} Probab=97.12 E-value=0.0014 Score=40.16 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=62.8 Q ss_pred HHHHHHHHHHHH-HHHHCCC------CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHH-HHHHHHHHHHHHHCC Q ss_conf 999898646356-4310012------34431111146773356565227554663478750000-389999999997389 Q gi|254780807|r 52 EDFWIRHVEDSL-RVFQLHP------YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKN-KKASFLRYVVQKTAA 123 (168) Q Consensus 52 ~~~~~rHi~DSl-~~~~~~~------~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~-KK~~FL~~~~~~L~L 123 (168) .-.|-.++++|- .+..++. .+++|+|+|+|.|+|||.+|..-.. .|+..|-.. --...++.-++..+. T Consensus 53 ~~~~g~~lW~aa~~La~~L~~~~~~~~Gk~VLELGaGtGl~gl~aA~~ga~----~Vv~tD~~~~~~~~~l~~Nv~~N~~ 128 (281) T 3bzb_A 53 HPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGAD----QVVATDYPDPEILNSLESNIREHTA 128 (281) T ss_dssp ---------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCS----EEEEEECSCHHHHHHHHHHHHTTCC T ss_pred CCCCCEEEHHHHHHHHHHHHHCHHHCCCCEEEEECCHHHHHHHHHHHHCCC----EEEEEECCCHHHHHHHHHHHHHHCC T ss_conf 886564656799999999983923309982999785522999999985898----7999976967889999999998545 Q ss_pred CC-----------EEEECHHH----HH--HHCCCCCCEEEECCC----CCHHHHHHHHHHHHC Q ss_conf 80-----------99804266----53--312479869999147----998999998488520 Q gi|254780807|r 124 RG-----------KVFACRIQ----EA--PQMITTCDVISARAL----ADLDTLLEYSFPWLY 165 (168) Q Consensus 124 ~~-----------~vi~~r~e----~~--~~~~~~~d~v~sRA~----a~l~~ll~~~~pllk 165 (168) .+ .+...... .. .....+||+|++=-+ ...+.|+.-...+|+ T Consensus 129 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~fDvIi~aDvvY~~~~~~~L~~ti~~lL~ 191 (281) T 3bzb_A 129 NSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA 191 (281) T ss_dssp ----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC T ss_conf 565533346775179961356664100011236778768853001466679999999999963 No 133 >1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Probab=97.10 E-value=0.00054 Score=42.63 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=64.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-----EEEEC Q ss_conf 9864635643100123443111114677335656522755466347875000038999999999738980-----99804 Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-----KVFAC 130 (168) Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-----~vi~~ 130 (168) ..++.+.+.. ....+|+|+|+|.|...++||=. +..|+.+|.+..-+...++-....+... .+... T Consensus 45 ~~~~~~~l~~----~~~~~vLDiGcG~G~~~~~la~~-----g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~~ 115 (292) T 1xva_A 45 KAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEE-----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA 115 (292) T ss_dssp HHHHHHHHHH----TTCCEEEESSCTTSHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC T ss_pred HHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEC T ss_conf 9999996413----18499999047884999999977-----99699998999999999999986444656313566411 Q ss_pred HHHHH---HHCCCCCCEEEECC--C----------CCHHHHHHHHHHHHCC Q ss_conf 26653---31247986999914--7----------9989999984885206 Q gi|254780807|r 131 RIQEA---PQMITTCDVISARA--L----------ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 131 r~e~~---~~~~~~~d~v~sRA--~----------a~l~~ll~~~~pllk~ 166 (168) +.... .....+||.|++-. + ..+..+++-+...||+ T Consensus 116 ~~~~~~~~~~~~~~fD~v~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp 166 (292) T 1xva_A 116 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 166 (292) T ss_dssp CGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE T ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 101244345666761399990622644588443768999999999987882 No 134 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Probab=97.06 E-value=0.00087 Score=41.44 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=56.4 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC----CCEEEECHHHHHHHCCCCCCE Q ss_conf 1234431111146773356565227554663478750000389999999997389----809980426653312479869 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA----RGKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L----~~~vi~~r~e~~~~~~~~~d~ 144 (168) .+.+++|+|+|+|.|.-.++||= .+..|+.+|.+..-+...+.-..+.++ +.+++++.+++++. ..+||. T Consensus 80 ~p~~g~vLDlGcG~G~~~~~la~-----~g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~ 153 (299) T 3g2m_A 80 GPVSGPVLELAAGMGRLTFPFLD-----LGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGT 153 (299) T ss_dssp CCCCSCEEEETCTTTTTHHHHHT-----TTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEE T ss_pred CCCCCCEEEEECCCCHHHHHHHH-----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCC-CCCCCE T ss_conf 99999799991667789999997-----799799996999999999999986476632204478603210674-555312 Q ss_pred EEEC Q ss_conf 9991 Q gi|254780807|r 145 ISAR 148 (168) Q Consensus 145 v~sR 148 (168) |++- T Consensus 154 v~~~ 157 (299) T 3g2m_A 154 VVIS 157 (299) T ss_dssp EEEC T ss_pred EEEE T ss_conf 4897 No 135 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Probab=97.06 E-value=0.0014 Score=40.24 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=60.1 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEE Q ss_conf 123443111114677335656522755466347875000038999999999738980-9980426653312479869999 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~s 147 (168) .+.+++|+|+|+|.|.=...++-. +..|+.+|.+..-+... ++.++.+ +++...+++++. ..+||.|++ T Consensus 44 ~~~~~~vLDvGcG~G~~~~~la~~-----g~~v~gvD~S~~~l~~a----~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~ 113 (218) T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL-----ADRVTALDGSAEMIAEA----GRHGLDNVEFRQQDLFDWTP-DRQWDAVFF 113 (218) T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH-----SSEEEEEESCHHHHHHH----GGGCCTTEEEEECCTTSCCC-SSCEEEEEE T ss_pred CCCCCCEEEECCCCCHHHHHHHHC-----CCEEEEEECCCHHHHHH----HHHHCCCEEECCCHHHCCCC-CCCCEEEEE T ss_conf 688997999889887899999961-----99899997831789999----97305511100110101256-887328997 Q ss_pred CCCCC------HHHHHHHHHHHHCC Q ss_conf 14799------89999984885206 Q gi|254780807|r 148 RALAD------LDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~a~------l~~ll~~~~pllk~ 166 (168) ..+.. +..+++-....||+ T Consensus 114 ~~~l~h~~~~~~~~~~~~~~r~Lkp 138 (218) T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAP 138 (218) T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEE T ss_pred EEEHHHCCHHHHHHHHHHHHHHCCC T ss_conf 2126648906899999999987398 No 136 >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Probab=97.04 E-value=0.0033 Score=38.08 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=61.5 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH---HHHHCCCCCCE Q ss_conf 123443111114677335656522-75546634787500003899999999973898099804266---53312479869 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ---EAPQMITTCDV 144 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e---~~~~~~~~~d~ 144 (168) ++.+.+|+|+|+|.|.....+|=. -|+ +.|+.+|.+......+++...+.. |...+...+. ..+.....+|. T Consensus 75 lkpG~~VLDlG~G~G~~~~~la~~vg~~---G~V~aVD~s~~~l~~a~~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~ 150 (233) T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPD---GLVYAVEFSHRSGRDLINLAKKRT-NIIPVIEDARHPHKYRMLIAMVDV 150 (233) T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTT---CEEEEECCCHHHHHHHHHHHHHCT-TEEEECSCTTCGGGGGGGCCCEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHCCCCCCEEEE T ss_conf 9999999996576898999999985999---679999799999999999755146-664289753670111566526888 Q ss_pred EEECCCCC---HHHHHHHHHHHHCC Q ss_conf 99914799---89999984885206 Q gi|254780807|r 145 ISARALAD---LDTLLEYSFPWLYQ 166 (168) Q Consensus 145 v~sRA~a~---l~~ll~~~~pllk~ 166 (168) +.+ .+.. ...++.-+.++||+ T Consensus 151 i~~-~~~~~~~~~~~l~~~~r~LKp 174 (233) T 2ipx_A 151 IFA-DVAQPDQTRIVALNAHTFLRN 174 (233) T ss_dssp EEE-CCCCTTHHHHHHHHHHHHEEE T ss_pred EEC-CCCCCHHHHHHHHHHHHHCCC T ss_conf 531-422651599999999985689 No 137 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=97.02 E-value=0.0019 Score=39.48 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=53.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEECC Q ss_conf 23443111114677335656522755466347875000038999999999738980998042665331247986999914 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) ..+.+++|+|+|.|.-...++=.+|+.. ++.+|.+..-+... .++ .-+...+.+.+++++-..+.||+|++.. T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~~gvD~s~~~l~~a---~~~-~~~~~~~~~d~~~lp~~d~sfD~v~~~~ 156 (269) T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEIT---TFGLDVSKVAIKAA---AKR-YPQVTFCVASSHRLPFSDTSMDAIIRIY 156 (269) T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSE---EEEEESCHHHHHHH---HHH-CTTSEEEECCTTSCSBCTTCEEEEEEES T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHH---HHC-CCCCCCEECCHHHCCCCCCCEEEEECCC T ss_conf 8899699968989699999998689968---99997958899999---851-7754300023421678998577874206 No 138 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Probab=97.00 E-value=0.0003 Score=44.13 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=54.3 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CE-EEECHHHH-HHHCCCCCCEEE Q ss_conf 2344311111467733565652275546634787500003899999999973898-09-98042665-331247986999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GK-VFACRIQE-APQMITTCDVIS 146 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~-vi~~r~e~-~~~~~~~~d~v~ 146 (168) ..+.+|+|+|+|.|--...++= .+..|+.+|.++.-+...+ +.... .. +......+ .......||+|+ T Consensus 51 ~~~~~vLDiGcG~G~~~~~l~~-----~g~~v~gvD~S~~~i~~A~----~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~ 121 (227) T 3e8s_A 51 RQPERVLDLGCGEGWLLRALAD-----RGIEAVGVDGDRTLVDAAR----AAGAGEVHLASYAQLAEAKVPVGKDYDLIC 121 (227) T ss_dssp TCCSEEEEETCTTCHHHHHHHT-----TTCEEEEEESCHHHHHHHH----HTCSSCEEECCHHHHHTTCSCCCCCEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHH-----CCCEEEEECCCHHHHHHHH----HHCCCCCCEEEEEECCCCCCCCCCCCCEEE T ss_conf 8959899976898399999997-----6996999868178899999----860146512443301111224677714899 Q ss_pred ECCC---CCHHHHHHHHHHHHCC Q ss_conf 9147---9989999984885206 Q gi|254780807|r 147 ARAL---ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~---a~l~~ll~~~~pllk~ 166 (168) |..+ .++..++.-....||+ T Consensus 122 ~~~~l~~~d~~~~l~~~~r~Lkp 144 (227) T 3e8s_A 122 ANFALLHQDIIELLSAMRTLLVP 144 (227) T ss_dssp EESCCCSSCCHHHHHHHHHTEEE T ss_pred EEEEEEECCHHHHHHHHHHHCCC T ss_conf 96378608999999999998388 No 139 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Probab=96.99 E-value=0.0045 Score=37.31 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=55.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHH-HHHCCCCCCEEEE Q ss_conf 344311111467733565652275546634787500003899999999973898--0998042665-3312479869999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQE-APQMITTCDVISA 147 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~-~~~~~~~~d~v~s 147 (168) ...+++|||.|.|.-.+-++-.+|+++ ++.+|- +--+...++.+.+.++. ++++.+...+ .+.....||++++ T Consensus 179 ~~~~vlDvGgG~G~~~~~l~~~~p~~~---~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gd~~~~~~~~~~~~D~v~~ 254 (352) T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLRRHPQLT---GQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVML 254 (352) T ss_dssp TCCEEEEETCTTCHHHHHHHHHCTTCE---EEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCEEE---EEEEEC-HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEE T ss_conf 799899988988799999997598348---999601-9999999999986388655257754411134566777636875 Q ss_pred CCC Q ss_conf 147 Q gi|254780807|r 148 RAL 150 (168) Q Consensus 148 RA~ 150 (168) +.+ T Consensus 255 ~~v 257 (352) T 3mcz_A 255 NDC 257 (352) T ss_dssp ESC T ss_pred CCE T ss_conf 131 No 140 >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Probab=96.98 E-value=0.0015 Score=40.01 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=59.9 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEE Q ss_conf 00123443111114677335656522755466347875000038999999999738980998042665331247986999 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168) .+.+++.+|+|+|+|.|.-.+++|=. +..|+.+|.++.-+.. +.++ ..+..++++.+.+++. .++||.|+ T Consensus 36 ~~~~~~~~VLDiGcG~G~~~~~la~~-----g~~v~giD~S~~~l~~---a~~~-~~~~~~~~~d~~~~~~-~~~fD~v~ 105 (239) T 3bxo_A 36 SRTPEASSLLDVACGTGTHLEHFTKE-----FGDTAGLELSEDMLTH---ARKR-LPDATLHQGDMRDFRL-GRKFSAVV 105 (239) T ss_dssp HHCTTCCEEEEETCTTSHHHHHHHHH-----HSEEEEEESCHHHHHH---HHHH-CTTCEEEECCTTTCCC-SSCEEEEE T ss_pred HHCCCCCEEEEEECCCCHHHHHHHHC-----CCEEEEEECCHHHHHH---HHHC-CCCCCCCCCCCCCCCC-CCCCCHHE T ss_conf 74899498999817584999999973-----9969999696788788---8633-6544223221126773-31432100 Q ss_pred EC--C---CCCHH---HHHHHHHHHHCC Q ss_conf 91--4---79989---999984885206 Q gi|254780807|r 147 AR--A---LADLD---TLLEYSFPWLYQ 166 (168) Q Consensus 147 sR--A---~a~l~---~ll~~~~pllk~ 166 (168) +- + +...+ .++.-....||+ T Consensus 106 ~~~~s~~~l~~~~~~~~~l~~~~~~Lk~ 133 (239) T 3bxo_A 106 SMFSSVGYLKTTEELGAAVASFAEHLEP 133 (239) T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHHTEEE T ss_pred EEHHHHHCCCCHHHHHHHHHHHHHHCCC T ss_conf 1011012059988999999999986289 No 141 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Probab=96.97 E-value=0.0014 Score=40.23 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=56.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEEC Q ss_conf 23443111114677335656522755466347875000038999999999738980-99804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sR 148 (168) +++++|+|||+|.|-=...++ + .+..|+.+|.+.+-+...+ -.... .+.+..+.+.+...++||+|+|. T Consensus 31 ~~~~~ILDIGcG~G~~~~~l~----~-~~~~v~giD~s~~~i~~a~-----~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 100 (230) T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIK----E-NGTRVSGIEAFPEAAEQAK-----EKLDHVVLGDIETMDMPYEEEQFDCVIFG 100 (230) T ss_dssp TTCSEEEEETCTTSHHHHHHH----T-TTCEEEEEESSHHHHHHHH-----TTSSEEEESCTTTCCCCSCTTCEEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHH----H-CCCEEEEEECCHHHHHHHH-----HCCCEEEEEHHHHHCCCCCCCCEEEEEEE T ss_conf 579969995188869999999----7-5998999967256666654-----11312331010221388887863588740 Q ss_pred CC----CCHHHHHHHHHHHHCC Q ss_conf 47----9989999984885206 Q gi|254780807|r 149 AL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~----a~l~~ll~~~~pllk~ 166 (168) .+ .++..+++-....|++ T Consensus 101 ~vl~h~~d~~~~l~~i~~~Lkp 122 (230) T 3cc8_A 101 DVLEHLFDPWAVIEKVKPYIKQ 122 (230) T ss_dssp SCGGGSSCHHHHHHHTGGGEEE T ss_pred EEEEECCCHHHHHHHHHHHCCC T ss_conf 0555548868999999863386 No 142 >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=96.95 E-value=0.0018 Score=39.63 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=56.2 Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEE Q ss_conf 00123443111114677335656522755466347875000038999999999738980998042665331247986999 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVIS 146 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~ 146 (168) .+.+.+.+++|+|+|.|.-...++=. +..|+.+|.++.-+.-. .++. -+...+...++...-..+.||.|+ T Consensus 42 ~~~~~~~~vLDlGCG~G~~~~~l~~~-----~~~v~giD~s~~~i~~a---~~~~-~~~~~~~~~~~~~~~~~~~fD~v~ 112 (195) T 3cgg_A 42 AMAPRGAKILDAGCGQGRIGGYLSKQ-----GHDVLGTDLDPILIDYA---KQDF-PEARWVVGDLSVDQISETDFDLIV 112 (195) T ss_dssp HHSCTTCEEEEETCTTTHHHHHHHHT-----TCEEEEEESCHHHHHHH---HHHC-TTSEEEECCTTTSCCCCCCEEEEE T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHH---HHHC-CCCCEEECCCCCCCCCCCCCCEEE T ss_conf 65899998999768885999999976-----99899997972778999---9730-254311024335656665325899 Q ss_pred ECC-C---CC---HHHHHHHHHHHHCC Q ss_conf 914-7---99---89999984885206 Q gi|254780807|r 147 ARA-L---AD---LDTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA-~---a~---l~~ll~~~~pllk~ 166 (168) |.. + -+ ...+++-....||+ T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~r~Lkp 139 (195) T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGA 139 (195) T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEE T ss_pred ECCHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 823034448857899999999998786 No 143 >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 Probab=96.69 E-value=0.0064 Score=36.45 Aligned_cols=94 Identities=9% Similarity=0.022 Sum_probs=67.6 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC---CEEEECHHHHH----HHCCCC Q ss_conf 12344311111467733565652275546634787500003899999999973898---09980426653----312479 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR---GKVFACRIQEA----PQMITT 141 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~---~~vi~~r~e~~----~~~~~~ 141 (168) ...+.+++|+.||.|=-|+..|..- ..+|+.||.+...+...++-.+..+++ .+++.+.+.+. .....+ T Consensus 210 ~~~g~rVLDlfs~tGgfsl~aa~~g----A~~V~~vD~s~~a~~~a~~N~~~N~l~~~~~~~~~~D~~~~L~~~~~~~~~ 285 (385) T 2b78_A 210 SAAGKTVLNLFSYTAAFSVAAAMGG----AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 285 (385) T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT----BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC T ss_pred HCCCCCEEEECCCCCHHHHHHHHCC----CCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCC T ss_conf 5599916863676878999998779----958885267699999999989984899764477726699999999864898 Q ss_pred CCEEEE-------------CCCCCHHHHHHHHHHHHCC Q ss_conf 869999-------------1479989999984885206 Q gi|254780807|r 142 CDVISA-------------RALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 142 ~d~v~s-------------RA~a~l~~ll~~~~pllk~ 166 (168) ||+|+. +|......|+..+.++|++ T Consensus 286 fD~IilDPP~f~~~~~~~~~~~~~y~~L~~~a~~ll~~ 323 (385) T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE 323 (385) T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88899898633588788999999999999999996289 No 144 >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=96.66 E-value=0.0044 Score=37.34 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=55.7 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) .+.+++|||.|.|.-.+.++-.+|+++ ++.+|- ..-+...++.++..++. ++++.+...+.+ ....||+|+++ T Consensus 165 ~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~~d~~~~~-~~~~~D~v~~~ 239 (335) T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAE---IFGVDW-ASVLEVAKENARIQGVASRYHTIAGSAFEVD-YGNDYDLVLLP 239 (335) T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCE---EEEEEC-HHHHHHHHHHHHHHTCGGGEEEEESCTTTSC-CCSCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCC---EEEECC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHCC-CCCCHHHHHHH T ss_conf 898799979996299999998589877---377446-7888999987886087435653245332055-43313588863 Q ss_pred CC Q ss_conf 47 Q gi|254780807|r 149 AL 150 (168) Q Consensus 149 A~ 150 (168) -+ T Consensus 240 ~v 241 (335) T 2r3s_A 240 NF 241 (335) T ss_dssp SC T ss_pred HH T ss_conf 00 No 145 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Probab=96.65 E-value=0.011 Score=34.97 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=54.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389--8099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||.|.|.=.+-++=.+|+++ ++.+|. +.-+.-.++.+.+.++ +++++.+.+.+. ....+|+|+.+ T Consensus 190 ~~~~vlDiG~G~G~~~~~l~~~~p~~~---~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gD~~~~--~~p~~D~v~~~ 263 (359) T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELD---STILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPEADAVLFC 263 (359) T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCE---EEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCCCSEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCEE---EEEECC-HHHHHHHHHHHHHCCCCCCCEEEECCHHHC--CCCCCCEEEEE T ss_conf 787799767989799999998399228---998166-888999998667507763452783457763--57876504556 Q ss_pred CC Q ss_conf 47 Q gi|254780807|r 149 AL 150 (168) Q Consensus 149 A~ 150 (168) -+ T Consensus 264 ~v 265 (359) T 1x19_A 264 RI 265 (359) T ss_dssp SC T ss_pred EE T ss_conf 30 No 146 >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Probab=96.61 E-value=0.003 Score=38.29 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=53.9 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH--------HHHCCCC-EEEECHHHH-HHHC--C Q ss_conf 44311111467733565652275546634787500003899999999--------9738980-998042665-3312--4 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVV--------QKTAARG-KVFACRIQE-APQM--I 139 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~--------~~L~L~~-~vi~~r~e~-~~~~--~ 139 (168) .-.++|||+|.|-=-+-+|..+|+.. +..+|...+.+.....-+ .+.+++| .++++.+.+ +.+. . T Consensus 50 ~p~iLeIGcG~G~~l~~lA~~~p~~~---~iGiEi~~~~v~~~~~ri~~~~~~~a~~~~l~Ni~~~~~da~~~l~~~~~~ 126 (246) T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDL---ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246) T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSE---EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCC---EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCC T ss_conf 98799982689989999998689875---898850368999999999999874787749871999937348888875146 Q ss_pred CCCCEEEE Q ss_conf 79869999 Q gi|254780807|r 140 TTCDVISA 147 (168) Q Consensus 140 ~~~d~v~s 147 (168) ..+|.|.. T Consensus 127 ~s~d~v~i 134 (246) T 2vdv_E 127 GQLSKMFF 134 (246) T ss_dssp TCEEEEEE T ss_pred CCCCEEEE T ss_conf 77673489 No 147 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Probab=96.55 E-value=0.0025 Score=38.81 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=60.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389--8099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) .+.+++|||.|.|.-.+.++-.+|+++ ++.+|- +.-+...++-+...++ ++++..+...+ +....||+|+.+ T Consensus 167 ~~~~vlDvG~G~G~~~~~l~~~~P~l~---~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~gd~~~--~~p~~~D~v~~~ 240 (334) T 2ip2_A 167 RGRSFVDVGGGSGELTKAILQAEPSAR---GVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ--EVPSNGDIYLLS 240 (334) T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTCE---EEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT--CCCSSCSEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCEE---EEEECC-CCHHHHHHHHHHHCCCCCEEEEECCCHHH--CCCCCCCEEEEE T ss_conf 888673038987688888898699649---998228-51128998767650777706997177654--388757089996 Q ss_pred CCC---CHH---HHHHHHHHHHCC Q ss_conf 479---989---999984885206 Q gi|254780807|r 149 ALA---DLD---TLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a---~l~---~ll~~~~pllk~ 166 (168) .+- +-+ .++.-+..-|++ T Consensus 241 ~vlh~~~d~~~~~iL~~~~~aL~p 264 (334) T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAG 264 (334) T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCT T ss_pred EEECCCCHHHHHHHHHHHHHHHCC T ss_conf 211158978999999999986089 No 148 >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI- 2, protein structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Probab=96.51 E-value=0.014 Score=34.53 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=66.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC---CEEEECHHHHH-H---HCCCCC Q ss_conf 2344311111467733565652275546634787500003899999999973898---09980426653-3---124798 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR---GKVFACRIQEA-P---QMITTC 142 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~---~~vi~~r~e~~-~---~~~~~~ 142 (168) ..+.+|+|+.+|.|--|+..|-. +..|+.||.+++-+...++-.+..+++ .+.+++.+.+. . ....+| T Consensus 152 ~kg~rVLdlF~ytG~~sl~aa~~-----GA~V~~VD~s~~al~~a~~N~~lNg~~~~~~~~i~~Da~~~l~~~~~~g~~f 226 (332) T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA-----GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY 226 (332) T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-----TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB T ss_pred CCCCEEEECCCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCC T ss_conf 58975887267777789999978-----9849999387999999999999848988858999267999999999718997 Q ss_pred CEEEEC--CC------------CCHHHHHHHHHHHHCCC Q ss_conf 699991--47------------99899999848852067 Q gi|254780807|r 143 DVISAR--AL------------ADLDTLLEYSFPWLYQK 167 (168) Q Consensus 143 d~v~sR--A~------------a~l~~ll~~~~pllk~k 167 (168) |+|+.= +| ..++.++..+..++++. T Consensus 227 D~IilDPP~f~~~~k~~~~~~~~~~~~l~~~~~~Ll~pg 265 (332) T 2igt_A 227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK 265 (332) T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 689978964466742248899999999999999970699 No 149 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Probab=96.49 E-value=0.018 Score=33.88 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=60.3 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||.|.|.-.+-++=.+|+++ ++.+|. +.-+...+..+...++. +++......+ +....||+++.+ T Consensus 169 ~~~~vlDvGgG~G~~~~~l~~~~P~~~---~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~--~~p~~~D~~~~~ 242 (332) T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD--PLPAGAGGYVLS 242 (332) T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCCCSCSEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCE---EEEEEC-HHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCCEEEEE T ss_conf 674787528997699999999789986---999978-43899999875641678745773375123--589987389972 Q ss_pred CCCC----H--HHHHHHHHHHHCC Q ss_conf 4799----8--9999984885206 Q gi|254780807|r 149 ALAD----L--DTLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a~----l--~~ll~~~~pllk~ 166 (168) .+-. - ..++.-+..-|++ T Consensus 243 ~vlh~~~d~~~~~iL~~~~~~L~p 266 (332) T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGS 266 (332) T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 145678989999999999997599 No 150 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Probab=96.48 E-value=0.0038 Score=37.71 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=56.9 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-C-CEEEECHHHHH-HHCCCCCCEEE Q ss_conf 234431111146773356565227554663478750000389999999997389-8-09980426653-31247986999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-R-GKVFACRIQEA-PQMITTCDVIS 146 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~-~~vi~~r~e~~-~~~~~~~d~v~ 146 (168) ....+++|||.|.|.=.+-++=.+|+.+ ++.+|...- +...+.-+..-++ + ++.+.+.+.+. ......||+++ T Consensus 178 ~~~~~vLDiG~G~G~~~~~la~~~p~~~---~~~~d~~~~-~~~~~~~~~~~~~~~rv~~~~~d~~~~~~~~~~~~d~~~ 253 (363) T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVE---VTIVDLPQQ-LEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW 253 (363) T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCE---EEEEECHHH-HHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCEE---EEEECCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEE T ss_conf 5899899979995299999998689739---999757116-799998876527877269997333356678999844897 Q ss_pred ECCCC-CH-----HHHHHHHHHHHCC Q ss_conf 91479-98-----9999984885206 Q gi|254780807|r 147 ARALA-DL-----DTLLEYSFPWLYQ 166 (168) Q Consensus 147 sRA~a-~l-----~~ll~~~~pllk~ 166 (168) .+.+- .+ ..++.-...-|++ T Consensus 254 ~~~~l~~~~~~~~~~iL~~i~~~L~p 279 (363) T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGK 279 (363) T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCT T ss_pred EECHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 71012025614454579999966888 No 151 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Probab=96.48 E-value=0.013 Score=34.69 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=58.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-------CC---CCEEEECHHHHHH--H Q ss_conf 2344311111467733565652275546634787500003899999999973-------89---8099804266533--1 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT-------AA---RGKVFACRIQEAP--Q 137 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L-------~L---~~~vi~~r~e~~~--~ 137 (168) +.+..++|+|+|.|-..+.+|-.+|.. .++.||-+...+..-+...+++ ++ +++++++.+.+.+ + T Consensus 154 ~~~~~~~DiG~G~G~~~~~~a~~~~~~---~~~Giei~~~~~~~A~~~~~~~~~~~~~~g~~~~~v~~~~gD~~~~~~~~ 230 (416) T 1nw3_A 154 TDDDLFVDLGSGVGQVVLQVAAATNCK---HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 230 (416) T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCS---EEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHH T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC T ss_conf 999889966888888999999976998---89999799999999999999998877762677774599976656774100 Q ss_pred CCCCCCEEEECCCCCHHHHHH Q ss_conf 247986999914799899999 Q gi|254780807|r 138 MITTCDVISARALADLDTLLE 158 (168) Q Consensus 138 ~~~~~d~v~sRA~a~l~~ll~ 158 (168) ....+|+|.+-.+.-.+.+.. T Consensus 231 ~~~~adVv~~n~~~f~~~l~~ 251 (416) T 1nw3_A 231 RIANTSVIFVNNFAFGPEVDH 251 (416) T ss_dssp HHHHCSEEEECCTTTCHHHHH T ss_pred CCCCCEEEEECCCCCCHHHHH T ss_conf 267985999987127766999 No 152 >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Probab=96.42 E-value=0.0059 Score=36.62 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=54.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH------CCCC-EEEECHHHH-HHHC--CC Q ss_conf 344311111467733565652275546634787500003899999999973------8980-998042665-3312--47 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT------AARG-KVFACRIQE-APQM--IT 140 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L------~L~~-~vi~~r~e~-~~~~--~~ 140 (168) ....|+|||+|.|-=-+-+|..+|+.. +..+|-+.+.+.+....++.+ +++| .++++.+.+ +++. .. T Consensus 46 ~~~~iLeIGcG~G~~l~~lA~~~P~~~---~iGiei~~~~~~~~~~~~~~~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~ 122 (235) T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTL---ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235) T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSE---EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCC---EEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC T ss_conf 898799982268699999998686872---89886135899999989999999987088569998544487766651355 Q ss_pred CCCEEEEC Q ss_conf 98699991 Q gi|254780807|r 141 TCDVISAR 148 (168) Q Consensus 141 ~~d~v~sR 148 (168) .+|.|..- T Consensus 123 s~d~v~i~ 130 (235) T 3ckk_A 123 QLTKMFFL 130 (235) T ss_dssp CEEEEEEE T ss_pred CCHHCEEE T ss_conf 40010576 No 153 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Probab=96.41 E-value=0.005 Score=37.03 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=53.3 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+|+|||.|.|.=.+.++=.+|+++ ++.+|. ..-+...++.+.+.++. ..++.....+ .....||+|+++ T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~P~~~---~~~~D~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~p~~~D~v~~~ 255 (374) T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLR---GTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK--PLPVTADVVLLS 255 (374) T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCSCCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEE---EEEEEC-HHHHHHHHHHHHHCCCCCEEEEEECHHHH--CCCCCCCEEEEE T ss_conf 687899979988788999999789728---999607-88899999998855886227887041443--189877489984 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) -+- T Consensus 256 ~vl 258 (374) T 1qzz_A 256 FVL 258 (374) T ss_dssp SCG T ss_pred EEE T ss_conf 224 No 154 >2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Probab=96.36 E-value=0.052 Score=31.19 Aligned_cols=76 Identities=8% Similarity=0.015 Sum_probs=48.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCC----CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEE Q ss_conf 234431111146773356565227----5546634787500003899999999973898099804266533124798699 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQL----SSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVI 145 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~----p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v 145 (168) +++.+|+|.|+|.| ++.++++. .......++.+|....-+...+.-....+.+..++++..... ....+||+| T Consensus 129 ~~~~~vlDp~cGsG--~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~i 205 (344) T 2f8l_A 129 KKNVSILDPACGTA--NLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVV 205 (344) T ss_dssp CSEEEEEETTCTTS--HHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEE T ss_pred CCCCEEEECCCCCC--HHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHCCCCCCC-CCCCCCCCC T ss_conf 99988995489966--899999999875367761899998999999999964000222123310011001-346776721 Q ss_pred EEC Q ss_conf 991 Q gi|254780807|r 146 SAR 148 (168) Q Consensus 146 ~sR 148 (168) ++- T Consensus 206 v~N 208 (344) T 2f8l_A 206 ISD 208 (344) T ss_dssp EEE T ss_pred CCC T ss_conf 157 No 155 >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Probab=96.34 E-value=0.0053 Score=36.91 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=51.2 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 01234431111146773356565227554663478750000389999999997389809980426653312479869999 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) ..+.+..|+|+|+|.|. ++....+ .++.+|-.. .+..++.+.++.+|-..+.||+|++ T Consensus 64 ~~~~~~~IlDiGCG~G~----~~~~l~~----~v~~~D~~~--------------~~~~~~~~d~~~lp~~d~sfD~v~~ 121 (215) T 2zfu_A 64 QRPASLVVADFGCGDCR----LASSIRN----PVHCFDLAS--------------LDPRVTVCDMAQVPLEDESVDVAVF 121 (215) T ss_dssp TSCTTSCEEEETCTTCH----HHHHCCS----CEEEEESSC--------------SSTTEEESCTTSCSCCTTCEEEEEE T ss_pred HCCCCCEEEEECCCCCH----HHHHHCC----EEEEEECCC--------------CCCCEEECCCCCCCCCCCCCCEEEE T ss_conf 06688879983278339----9986302----267730236--------------8860577243248888996897999 Q ss_pred CCC---CCHHHHHHHHHHHHCC Q ss_conf 147---9989999984885206 Q gi|254780807|r 148 RAL---ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~---a~l~~ll~~~~pllk~ 166 (168) ..+ .+++..+.-+.+.||+ T Consensus 122 ~~~l~~~d~~~~l~E~~RvLkp 143 (215) T 2zfu_A 122 CLSLMGTNIRDFLEEANRVLKP 143 (215) T ss_dssp ESCCCSSCHHHHHHHHHHHEEE T ss_pred ECCEECCCHHHHHHHHHHHCCC T ss_conf 7310458989999999985389 No 156 >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A* Probab=96.32 E-value=0.0085 Score=35.72 Aligned_cols=81 Identities=9% Similarity=0.010 Sum_probs=61.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHH-HHH--CCCCCCEEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665-331--247986999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQE-APQ--MITTCDVIS 146 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~-~~~--~~~~~d~v~ 146 (168) ....++|||+|.|-=-+-+|..+|+.. +..+|.+.+.+.-...-+.+.+++| .++++.+.+ +.. ....+|.|. T Consensus 34 ~~pliLEIGcG~G~~l~~~A~~~P~~~---~iGiEi~~~~v~~a~~~~~~~~l~Ni~~~~~da~~~l~~~~~~~s~d~I~ 110 (218) T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQD---FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQ 110 (218) T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCC---EEEEEEECCCEEEEHHHCCHHHHCCCCEECCCHHHHHHHHCCCCCCCCCE T ss_conf 995399972688899999999689998---89999723505530321201210455056453899998752456454432 Q ss_pred ECCCCCHH Q ss_conf 91479989 Q gi|254780807|r 147 ARALADLD 154 (168) Q Consensus 147 sRA~a~l~ 154 (168) .=-=-|++ T Consensus 111 i~FPDPWp 118 (218) T 3dxy_A 111 LFFPDPWH 118 (218) T ss_dssp EESCCCCC T ss_pred ECCCCCCC T ss_conf 31688777 No 157 >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Probab=96.18 E-value=0.018 Score=33.87 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=58.4 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH------------ Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665331------------ Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ------------ 137 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~------------ 137 (168) .+..++|+-+|.|.=|++||=. ...|+.||.+.--+.-.++-++..+++| ..+++++|++.+ T Consensus 213 ~~~~vlDLycG~Gt~sl~La~~-----~~~V~gvE~~~~av~~A~~Na~~n~i~N~~f~~~~a~~~~~~~~~~~~~~~~~ 287 (369) T 3bt7_A 213 SKGDLLELYCGNGNFSLALARN-----FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 287 (369) T ss_dssp CCSEEEEESCTTSHHHHHHGGG-----SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGG T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 7764887378965889998730-----85788999702678999999997598871899725999998876314566530 Q ss_pred ----CCCCCCEEEE---CCCCC Q ss_conf ----2479869999---14799 Q gi|254780807|r 138 ----MITTCDVISA---RALAD 152 (168) Q Consensus 138 ----~~~~~d~v~s---RA~a~ 152 (168) ...++|+|+- |+=+. T Consensus 288 ~~~~~~~~~d~vilDPPR~Gl~ 309 (369) T 3bt7_A 288 GIDLKSYQCETIFVDPPRSGLD 309 (369) T ss_dssp GSCGGGCCEEEEEECCCTTCCC T ss_pred CCCHHCCCCCEEEECCCCCCCH T ss_conf 2310126587799897962518 No 158 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Probab=96.06 E-value=0.018 Score=33.85 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=62.1 Q ss_pred HHHHHHHC--CCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC----------C--CC Q ss_conf 35643100--123443111114677335656522-755466347875000038999999999738----------9--80 Q gi|254780807|r 61 DSLRVFQL--HPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTA----------A--RG 125 (168) Q Consensus 61 DSl~~~~~--~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~----------L--~~ 125 (168) |+.+++.. +..+.+|+|+|||.|.-.+.||=+ .|+ ++|+.+|.++..+...++-++..+ . ++ T Consensus 93 D~a~Il~~l~I~PG~rVLE~GtGsG~lt~~LAr~vgp~---G~V~~~D~~~~~~~~Ar~n~~~~~~~~~~~~~~~~~~~v 169 (336) T 2b25_A 93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQ---GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 169 (336) T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTT---CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCC---CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 89999998589999889983537779999999962898---489984399999999999999743200012211367707 Q ss_pred EEEECHHHHHHH--CCCCCCEEEECCCCCHHHHHHHHHHHHC Q ss_conf 998042665331--2479869999147998999998488520 Q gi|254780807|r 126 KVFACRIQEAPQ--MITTCDVISARALADLDTLLEYSFPWLY 165 (168) Q Consensus 126 ~vi~~r~e~~~~--~~~~~d~v~sRA~a~l~~ll~~~~pllk 165 (168) .+++..+.+... ....||.|+-=--.|+. .++-+.+.|| T Consensus 170 ~~~~~di~~~~~~~~~~~~D~VfLDlp~P~~-~l~~~~r~LK 210 (336) T 2b25_A 170 DFIHKDISGATEDIKSLTFDAVALDMLNPHV-TLPVFYPHLK 210 (336) T ss_dssp EEEESCTTCCC-------EEEEEECSSSTTT-THHHHGGGEE T ss_pred EEEECCHHHCCCCCCCCCCCEEECCCCCHHH-HHHHHHHHCC T ss_conf 9997766652355688753331046769899-9999998466 No 159 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Probab=96.02 E-value=0.021 Score=33.45 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=54.6 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC----------CC--EEEECHHHH--H Q ss_conf 234431111146773356565227554663478750000389999999997389----------80--998042665--3 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA----------RG--KVFACRIQE--A 135 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L----------~~--~vi~~r~e~--~ 135 (168) ..+..++|+|+|.|-.-+.+|-.++.. .++.||-+..-+.+-++..++.+. .. .+..+-+++ + T Consensus 241 kpgd~fLDLGCG~G~vvl~aA~~~g~~---~viGIDis~~~l~~A~~~~~e~~~~~~~~~~~~~~~~l~~~~~f~~~~~~ 317 (433) T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCA---LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV 317 (433) T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCS---EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCC T ss_conf 999989974899989999999975998---79999799999999999999988776663034777526898361423753 Q ss_pred HHCCCCCCEEEECCCCCHHHHH Q ss_conf 3124798699991479989999 Q gi|254780807|r 136 PQMITTCDVISARALADLDTLL 157 (168) Q Consensus 136 ~~~~~~~d~v~sRA~a~l~~ll 157 (168) ......+|+|++-.+.-.+.+. T Consensus 318 ~~~l~~adVV~inn~~f~~dl~ 339 (433) T 1u2z_A 318 AELIPQCDVILVNNFLFDEDLN 339 (433) T ss_dssp HHHGGGCSEEEECCTTCCHHHH T ss_pred CCCCCCCCEEEECCCCCCHHHH T ss_conf 1245676289982502766688 No 160 >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Probab=96.01 E-value=0.051 Score=31.22 Aligned_cols=72 Identities=14% Similarity=0.022 Sum_probs=56.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH----HHCCCCCCEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-9980426653----3124798699 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA----PQMITTCDVI 145 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~----~~~~~~~d~v 145 (168) .+..++|+-+|.|.=|++||=. ..+|+.||.+.--+...+.-++..+++| +.+++++++. +....++|+| T Consensus 286 ~~~~vlDLYcG~G~fsl~La~~-----~~~V~gvE~~~~Av~~A~~na~~n~~~n~~f~~~~~~~~~~~~~~~~~~~d~v 360 (433) T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQ-----AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 (433) T ss_dssp TTCEEEEESCTTTTTHHHHHTT-----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEE T ss_pred CCCEEEEECCCCCHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEE T ss_conf 8877999568851777876650-----56245663549999999999998499756999147566644306652799989 Q ss_pred EE Q ss_conf 99 Q gi|254780807|r 146 SA 147 (168) Q Consensus 146 ~s 147 (168) +- T Consensus 361 il 362 (433) T 1uwv_A 361 LL 362 (433) T ss_dssp EE T ss_pred EE T ss_conf 98 No 161 >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Probab=96.01 E-value=0.014 Score=34.50 Aligned_cols=91 Identities=14% Similarity=-0.077 Sum_probs=58.1 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHHH-----CCCC Q ss_conf 01234431111146773356565227554663478750000389999999997389-80998042665331-----2479 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAPQ-----MITT 141 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~~-----~~~~ 141 (168) +.+.+.+++|+|+|.|.-...+|=.. ..|+.+|.++.-+...+ ++..- +.+.....+++... .... T Consensus 53 ~~~~~~~vLDvGCG~G~~~~~la~~g-----~~v~gvD~s~~~i~~Ar---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 124 (245) T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF-----PRVIGLDVSKSALEIAA---KENTAANISYRLLDGLVPEQAAQIHSEIG 124 (245) T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS-----SCEEEEESCHHHHHHHH---HHSCCTTEEEEECCTTCHHHHHHHHHHHC T ss_pred HCCCCCEEEEECCCCCHHHHHHHCCC-----CEEEEEECCHHHHHHHH---HHCCCCCEEEEEEECCCCCCCCCCCCCCC T ss_conf 06999858997587978799976378-----45998509999999999---86746750699950136532222245667 Q ss_pred CCEEEECCCC------CHHHHHHHHHHHHCC Q ss_conf 8699991479------989999984885206 Q gi|254780807|r 142 CDVISARALA------DLDTLLEYSFPWLYQ 166 (168) Q Consensus 142 ~d~v~sRA~a------~l~~ll~~~~pllk~ 166 (168) +++|++.++- ....+++-...+||+ T Consensus 125 d~~V~~~~~l~~l~~~d~~~~l~~~~r~Lkp 155 (245) T 3ggd_A 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGK 155 (245) T ss_dssp SCEEEEESSSTTSCGGGHHHHHHHHHHHHTT T ss_pred CEEEEEEECHHCCCHHHHHHHHHHHHHHCCC T ss_conf 7799996222118817899999999988799 No 162 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Probab=95.95 E-value=0.0094 Score=35.48 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=53.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-CC-CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 3443111114677335656522755466347875000038999999999738-98-099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA-AR-GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-L~-~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||+|.|.-...|+= ...+|+.+|.+..-+...+ ++.. .. ....+..+.+... .++||+|++- T Consensus 51 ~~~~vLDvGcG~G~~~~~la~-----~~~~v~gvD~s~~~l~~a~---~~~~~~~~i~~~~~d~~~~~~-~~~fD~V~~~ 121 (216) T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAP-----HCKRLTVIDVMPRAIGRAC---QRTKRWSHISWAATDILQFST-AELFDLIVVA 121 (216) T ss_dssp SEEEEEEECCTTSHHHHHHGG-----GEEEEEEEESCHHHHHHHH---HHTTTCSSEEEEECCTTTCCC-SCCEEEEEEE T ss_pred CCCEEEEEECCCCHHHHHHHH-----HCCEEEEEECCHHHHHHHH---HHHCCCCEEECCCCCHHHHCC-CCCCCEEEEC T ss_conf 999099963889899999997-----0998999969989999999---861546223101020223235-7871489984 Q ss_pred CCC----CHH---HHHHHHHHHHCC Q ss_conf 479----989---999984885206 Q gi|254780807|r 149 ALA----DLD---TLLEYSFPWLYQ 166 (168) Q Consensus 149 A~a----~l~---~ll~~~~pllk~ 166 (168) .+- +.. .+++-....||+ T Consensus 122 ~vl~~~~~~~~~~~~l~~~~~~L~p 146 (216) T 3ofk_A 122 EVLYYLEDMTQMRTAIDNMVKMLAP 146 (216) T ss_dssp SCGGGSSSHHHHHHHHHHHHHTEEE T ss_pred CCHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 5577589989999999999987798 No 163 >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Probab=95.90 E-value=0.014 Score=34.55 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=35.5 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC Q ss_conf 2344311111467733565652275546634787500003899999999973898 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR 124 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~ 124 (168) .++.+++|+|+|.|.-.+.+|- .....|+.+|-++.-+...++-++.-+.. T Consensus 54 ~~g~~vLDlGCG~G~~~~~~a~----~~~~~V~giD~S~~~i~~a~~~~~~~~~~ 104 (263) T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAAC----DSFQDITLSDFTDRNREELEKWLKKEPGA 104 (263) T ss_dssp CCEEEEEESSCTTCCGGGTTGG----GTEEEEEEEESCHHHHHHHHHHHHTCTTC T ss_pred CCCCEEEEECCCCCHHHHHHHH----HCCCEEEEECCCHHHHHHHHHHHHHCCCC T ss_conf 8998899978886289999998----47976899518999999999999865765 No 164 >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* Probab=95.75 E-value=0.0098 Score=35.36 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=43.9 Q ss_pred HHHHHHHHHHHH-HHHC-CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC Q ss_conf 998986463564-3100-12344311111467733565652275546634787500003899999999973898 Q gi|254780807|r 53 DFWIRHVEDSLR-VFQL-HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR 124 (168) Q Consensus 53 ~~~~rHi~DSl~-~~~~-~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~ 124 (168) ..+.+++...+. ++.. ..++.+++|+|+|.|...+.++-- ....|+.+|-++.-+...++-++..++. T Consensus 36 ~~~~~~~~~~l~~~~~~~~~~g~~vLDlGCG~G~~~~~l~~~----~~~~V~giD~S~~~i~~a~~~~~~~~~~ 105 (265) T 2i62_A 36 NEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACE----SFTEIIVSDYTDQNLWELQKWLKKEPGA 105 (265) T ss_dssp HHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGG----TEEEEEEEESCHHHHHHHHHHHTTCTTC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH----CCCEEEEECCCHHHHHHHHHHHHHCCCC T ss_conf 788899999999972788888988999678776769999972----1998999569999999999998754776 No 165 >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Probab=95.71 E-value=0.032 Score=32.36 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=56.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH---HCCCCCCEEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533---1247986999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP---QMITTCDVIS 146 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~---~~~~~~d~v~ 146 (168) .+..|+|+.+|.|=-..-||-...+ ...++.+|.+.+|+.-+++..+++|+++ .+++....... ....+||.|. T Consensus 102 ~g~~VLD~CAapGgKt~~la~l~~~--~~~i~a~D~~~~Rl~~l~~~~~r~g~~~v~~~~~d~~~~~~~~~~~~~fd~Il 179 (309) T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKN--QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309) T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCCEEEEE T ss_conf 9994999678965799999987258--96699980878889999876775087349997042444443344455113999 Q ss_pred ECC Q ss_conf 914 Q gi|254780807|r 147 ARA 149 (168) Q Consensus 147 sRA 149 (168) .-| T Consensus 180 vDa 182 (309) T 2b9e_A 180 LDP 182 (309) T ss_dssp ECC T ss_pred ECC T ss_conf 328 No 166 >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Probab=95.67 E-value=0.083 Score=30.01 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=71.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC----------------EEEECHHHH Q ss_conf 3443111114677335656522755466347875000038999999999738980----------------998042665 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG----------------KVFACRIQE 134 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~----------------~vi~~r~e~ 134 (168) .+.+++|..||.|.=||-.|.-.+- .+|+++|.+..-+..++.-++..++.+ .+.+..+.. T Consensus 47 ~~~~iLD~~sasG~r~iRya~E~~~---~~V~~nDi~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~ 123 (378) T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA---EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR 123 (378) T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC---SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH T ss_pred CCCEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHH T ss_conf 9998999788722999999985899---8899996998999999999997086533433343322455436752112788 Q ss_pred H-HHCCCCCCEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 3-3124798699991479989999984885206 Q gi|254780807|r 135 A-PQMITTCDVISARALADLDTLLEYSFPWLYQ 166 (168) Q Consensus 135 ~-~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168) + .+....||+|--=.|++...+++-+..-++. T Consensus 124 ~~~~~~~~~DvIDiDPfGsp~pfldsA~~a~~~ 156 (378) T 2dul_A 124 LMAERHRYFHFIDLDPFGSPMEFLDTALRSAKR 156 (378) T ss_dssp HHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEE T ss_pred HHHHCCCCCCEECCCCCCCHHHHHHHHHHHHCC T ss_conf 987447877433138999818999999997055 No 167 >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Probab=95.65 E-value=0.036 Score=32.07 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=58.4 Q ss_pred HHHHHHHHHH---HHHCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC----CCE Q ss_conf 8986463564---3100123443111114677-3356565227554663478750000389999999997389----809 Q gi|254780807|r 55 WIRHVEDSLR---VFQLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA----RGK 126 (168) Q Consensus 55 ~~rHi~DSl~---~~~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L----~~~ 126 (168) |.|.+...+. .....+...+++++|.|+| +|.- ++-.+|.. .++.||-...-+...++ .+++ +.. T Consensus 70 Y~r~m~~~~~~~~~~~~~~~p~rvL~lG~G~g~l~r~-l~~~~P~~---~v~~VEidp~vi~~ar~---~f~~~~~~rv~ 142 (317) T 3gjy_A 70 YMRWIATGARAFIDAHQDASKLRITHLGGGACTMARY-FADVYPQS---RNTVVELDAELARLSRE---WFDIPRAPRVK 142 (317) T ss_dssp HHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHH-HHHHSTTC---EEEEEESCHHHHHHHHH---HSCCCCTTTEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHH-HHHHCCCC---EEEEEECCHHHHHHHHH---HCCCCCCCCEE T ss_conf 9999999887502124699887799989968999999-99978998---69999798899999998---67998899768 Q ss_pred EEECHHHHH-HH-CCCCCCEEEECCCCCH Q ss_conf 980426653-31-2479869999147998 Q gi|254780807|r 127 VFACRIQEA-PQ-MITTCDVISARALADL 153 (168) Q Consensus 127 vi~~r~e~~-~~-~~~~~d~v~sRA~a~l 153 (168) ++.+.+.+. .. ...+||+|+.=+|.+. T Consensus 143 v~~~Da~~~l~~~~~~~~D~Iv~D~f~~~ 171 (317) T 3gjy_A 143 IRVDDARMVAESFTPASRDVIIRDVFAGA 171 (317) T ss_dssp EEESCHHHHHHTCCTTCEEEEEECCSTTS T ss_pred EEECCHHHHHHHCCCCCCCEEEEECCCCC T ss_conf 99784999997505578877999578876 No 168 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Probab=95.65 E-value=0.045 Score=31.51 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=53.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||.|.|.=.+-++=.+|+++ ++++|- +.-+.-.++.+.+.++. +++......+ .....+|+++.+ T Consensus 202 ~~~~vlDvGgG~G~~~~~l~~~~P~l~---~~~~Dl-p~v~~~a~~~~~~~~~~~ri~~~~~d~f~--~~p~~~D~~~l~ 275 (369) T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE--TIPDGADVYLIK 275 (369) T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT--CCCSSCSEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEEC-HHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCEEEEEE T ss_conf 786798857888889999999789986---999989-68889999877751777523685263233--589886099980 Q ss_pred CC Q ss_conf 47 Q gi|254780807|r 149 AL 150 (168) Q Consensus 149 A~ 150 (168) -+ T Consensus 276 ~v 277 (369) T 3gwz_A 276 HV 277 (369) T ss_dssp SC T ss_pred CC T ss_conf 43 No 169 >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Probab=95.63 E-value=0.042 Score=31.70 Aligned_cols=75 Identities=17% Similarity=0.109 Sum_probs=56.1 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--CC-CEEEECHHHHH-HHC-CCCC Q ss_conf 0123443111114677335656522755466347875000038999999999738--98-09980426653-312-4798 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA--AR-GKVFACRIQEA-PQM-ITTC 142 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~--L~-~~vi~~r~e~~-~~~-~~~~ 142 (168) .+..+.+++|+|+|-|.=++.+|=. ...|+.||...-.+...++-...++ .. .+++++.+++. ... ...| T Consensus 90 ~~~~g~~v~Dl~cG~G~da~alA~~-----~~~V~~vE~d~~~~~~A~~N~~~~~~~~~~v~~~~~D~~~~l~~~~~~~~ 164 (410) T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSK-----ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHP 164 (410) T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCC T ss_pred HCCCCCEEEECCCCHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCC T ss_conf 4679998998788667999999963-----99899995899999999984898726788269996668888753467778 Q ss_pred CEEEE Q ss_conf 69999 Q gi|254780807|r 143 DVISA 147 (168) Q Consensus 143 d~v~s 147 (168) |+|.. T Consensus 165 d~v~~ 169 (410) T 3ll7_A 165 DYIYV 169 (410) T ss_dssp SEEEE T ss_pred CEEEE T ss_conf 88997 No 170 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=95.49 E-value=0.054 Score=31.07 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=57.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC---EEEECHH Q ss_conf 9864635643100123443111114677335656522755466347875000038999999999738980---9980426 Q gi|254780807|r 56 IRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG---KVFACRI 132 (168) Q Consensus 56 ~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~---~vi~~r~ 132 (168) ..-+.+.|... -.+..++|+.+|.|-=|+= |+- .....|++||.+.+-++.++.-+..+++.+ .+.+..+ T Consensus 41 realFn~l~~~---~~~~~~LDLFaGSG~lglE-AlS---RGA~~v~fVE~~~~a~~~l~~N~~~l~~~~~~~~~~~~d~ 113 (201) T 2ift_A 41 KETLFNWLMPY---IHQSECLDGFAGSGSLGFE-ALS---RQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS 113 (201) T ss_dssp HHHHHHHHHHH---HTTCEEEETTCTTCHHHHH-HHH---TTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH T ss_pred HHHHHHHHHHH---CCCCEEEECCCCCCHHHHH-HHH---CCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHEEEEHHH T ss_conf 99999987764---2998799878882898999-998---8993999997405577899999998386632002320345 Q ss_pred HHHH---HCCCCCCEEEE Q ss_conf 6533---12479869999 Q gi|254780807|r 133 QEAP---QMITTCDVISA 147 (168) Q Consensus 133 e~~~---~~~~~~d~v~s 147 (168) .... ....+||+|.+ T Consensus 114 ~~~l~~~~~~~~fDlIFl 131 (201) T 2ift_A 114 LDFLKQPQNQPHFDVVFL 131 (201) T ss_dssp HHHTTSCCSSCCEEEEEE T ss_pred HHHHHHCCCCCCCCEEEE T ss_conf 655430024676655885 No 171 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Probab=95.44 E-value=0.047 Score=31.44 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=47.8 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH----HCCC-CEEEECHHHHHHHCC Q ss_conf 4431111146773356565227554663478750000389999999997----3898-099804266533124 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK----TAAR-GKVFACRIQEAPQMI 139 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~----L~L~-~~vi~~r~e~~~~~~ 139 (168) +..++|||+|.|.-...+|-..|+.. |+.||.++....+.+.-..+ .+.. .....+.+++++... T Consensus 25 ~~~vLDvGcG~G~~~~~la~~~p~~~---vvGvD~s~~~l~~a~~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 94 (225) T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTF---YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL 94 (225) T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEE---EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG T ss_pred CCEEEEEEEECCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCC T ss_conf 99899922767399999998689978---99986788999999988887544037864333205174498430 No 172 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Probab=95.13 E-value=0.066 Score=30.58 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=53.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||.|.|.-.+-++=.+|+++ ++.+|- +.-+...+..+..-++. ++++.....+ .....||+++.+ T Consensus 183 ~~~~vlDvGgG~G~~~~~l~~~~p~~~---~~~~D~-p~~~~~a~~~~~~~~l~~ri~~~~~d~~~--~~p~~~D~v~~~ 256 (360) T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE--PLPRKADAIILS 256 (360) T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS--CCSSCEEEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCEE---EEEEEC-HHHHHHHHHHHHHCCCCCCCEEECCCHHH--CCCCCCCEEEEE T ss_conf 575798638998688999997589448---999888-41479999999862887434351376754--278767489873 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) .+- T Consensus 257 ~vl 259 (360) T 1tw3_A 257 FVL 259 (360) T ss_dssp SCG T ss_pred EEE T ss_conf 477 No 173 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Probab=94.99 E-value=0.12 Score=29.13 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=47.2 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 234431111146773356565227554663478750000389999999997389809980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) ..+..|++||.|-|. +-.+++. ....|++||...+=+.+|+..... .-+.+++++.+..+.......+.|++ T Consensus 49 ~~~d~VlEIGpG~G~--LT~~Ll~---~~~~v~aiEiD~~l~~~L~~~~~~-~~n~~ii~~D~l~~d~~~~~~~~vv~ 120 (295) T 3gru_A 49 TKDDVVLEIGLGKGI--LTEELAK---NAKKVYVIEIDKSLEPYANKLKEL-YNNIEIIWGDALKVDLNKLDFNKVVA 120 (295) T ss_dssp CTTCEEEEECCTTSH--HHHHHHH---HSSEEEEEESCGGGHHHHHHHHHH-CSSEEEEESCTTTSCGGGSCCSEEEE T ss_pred CCCCEEEEECCCHHH--HHHHHHH---CCCCEEEEEECHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHCCCCEEEE T ss_conf 999959997997469--9999981---689669999887999999976764-27736885121037713337553786 No 174 >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Probab=94.77 E-value=0.024 Score=33.12 Aligned_cols=91 Identities=10% Similarity=-0.116 Sum_probs=56.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-------------CEEEECHHHHHH Q ss_conf 2344311111467733565652275546634787500003899999999973898-------------099804266533 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-------------GKVFACRIQEAP 136 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-------------~~vi~~r~e~~~ 136 (168) ..+.+|+|+|+|.|--...||= ++..|+.+|.++.-+...++-....++. .+..+....++. T Consensus 21 ~~g~rVLD~GCG~G~~~~~La~-----~g~~v~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (203) T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSG-----QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203) T ss_dssp CTTCEEEETTTCCSHHHHHHHH-----HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST T ss_pred CCCCEEEEECCCCCHHHHHHHH-----CCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEEEEHHCCC T ss_conf 9999799973789888999996-----79877885265999999999723455320001111002323689983011166 Q ss_pred -HCCCCCCEEEECCCC------CHHHHHHHHHHHHC Q ss_conf -124798699991479------98999998488520 Q gi|254780807|r 137 -QMITTCDVISARALA------DLDTLLEYSFPWLY 165 (168) Q Consensus 137 -~~~~~~d~v~sRA~a------~l~~ll~~~~pllk 165 (168) .....||.+.++.+- .....++-....|| T Consensus 96 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~ 131 (203) T 1pjz_A 96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP 131 (203) T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC T ss_pred CCCCCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHCC T ss_conf 322456217999850432697888899999998578 No 175 >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Probab=94.66 E-value=0.14 Score=28.71 Aligned_cols=77 Identities=17% Similarity=0.028 Sum_probs=59.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH-HCCCCCCEEEECC Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533-1247986999914 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP-QMITTCDVISARA 149 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~-~~~~~~d~v~sRA 149 (168) .+.+|+|+.++.|-=..-||=...+ ...++..|.+.+|+.-|..-.++++.++.+.+.....+. .....||.|..-| T Consensus 101 ~g~~VLDlCAAPGGKt~~la~~l~~--~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~~~fD~ILvDa 178 (464) T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGG--KGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464) T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTT--CSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC--CCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCEEEECC T ss_conf 9997988365876559999988535--83576224317888889888886188616872322433204666443798448 No 176 >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Probab=94.61 E-value=0.18 Score=28.04 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=58.7 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHHCCCCCCEEEECC Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665331247986999914 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVISARA 149 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~~~~~~d~v~sRA 149 (168) .+..|+|+.+|.|==..-++=..++ .+.++..|.+.+|+.-|+...++++..+ .+.+......+.....||.|..-| T Consensus 118 ~g~~vLD~CAaPGgKt~~l~~~~~~--~g~i~a~d~~~~R~~~l~~~l~r~g~~~i~~~~~d~~~~~~~~~~fD~ILlDa 195 (315) T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRN--DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315) T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTT--CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC T ss_pred CCCEEEECCCCCHHHHHHHHHHCCC--CCEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCCCHHCCCCCCCCCEEEEEC T ss_conf 9992889577711446653331268--84478410788999999999987187652111243000012356543798617 No 177 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Probab=94.26 E-value=0.083 Score=29.99 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=53.1 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--------CCEEEECHHH------HH Q ss_conf 234431111146773356565227554663478750000389999999997389--------8099804266------53 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--------RGKVFACRIQ------EA 135 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--------~~~vi~~r~e------~~ 135 (168) +.+.+|+|+|+|.|---.-+ ... ....++.+|.+..-+.-.++-...++. +...+++.+. .+ T Consensus 33 ~~~~~VLDlGCG~G~dl~k~--~~~--~~~~v~GiDis~~~i~~A~~r~~~~~~~~~~~~~~~~~f~~~D~~~~~~~~~~ 108 (313) T 3bgv_A 33 KRDITVLDLGCGKGGDLLKW--KKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF 108 (313) T ss_dssp --CCEEEEETCTTTTTHHHH--HHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC T ss_pred CCCCEEEEEECCCCHHHHHH--HHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHCHHHHHC T ss_conf 89797999734776889999--965--99979999599999999999988543222223577638996563212013314 Q ss_pred HHCCCCCCEEEECCCC-----C---HHHHHHHHHHHHC Q ss_conf 3124798699991479-----9---8999998488520 Q gi|254780807|r 136 PQMITTCDVISARALA-----D---LDTLLEYSFPWLY 165 (168) Q Consensus 136 ~~~~~~~d~v~sRA~a-----~---l~~ll~~~~pllk 165 (168) +....+||+|++-... + +..++.-....|| T Consensus 109 ~~~~~~FD~I~~~f~lhy~~~~~~~~~~~l~ni~~~Lk 146 (313) T 3bgv_A 109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS 146 (313) T ss_dssp SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE T ss_pred CCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHHHHCC T ss_conf 67677610899656424212158799998999875307 No 178 >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Probab=94.17 E-value=0.14 Score=28.71 Aligned_cols=74 Identities=20% Similarity=0.133 Sum_probs=56.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCE-EEECHHHHHHHCCCCCCEEEE-- Q ss_conf 34431111146773356565227554663478750000389999999997389809-980426653312479869999-- Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGK-VFACRIQEAPQMITTCDVISA-- 147 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~-vi~~r~e~~~~~~~~~d~v~s-- 147 (168) .+.+++|+-+|.|.=++|||=. ...|+.+|++..-+...++-+...++++. ....+.+.. ...+|.|+- T Consensus 290 ~~~~vlDLycG~G~fsl~LA~~-----~~~V~gvE~~~~av~~A~~na~~n~~~~~~~~~~~~~~~---~~~~D~vvlDP 361 (425) T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR-----GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS---VKGFDTVIVDP 361 (425) T ss_dssp CSSEEEEETCTTTHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC---CTTCSEEEECC T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHHH---HCCCCEEEECC T ss_conf 8777876267866888998742-----855457504688899999989877970798640113443---06999999999 Q ss_pred -CCCCC Q ss_conf -14799 Q gi|254780807|r 148 -RALAD 152 (168) Q Consensus 148 -RA~a~ 152 (168) ||=+. T Consensus 362 PR~G~~ 367 (425) T 2jjq_A 362 PRAGLH 367 (425) T ss_dssp CTTCSC T ss_pred CCCCCC T ss_conf 873628 No 179 >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Probab=94.17 E-value=0.28 Score=26.93 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=60.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH--------H-- Q ss_conf 999898646356431001234431111146773356565227554663478750000389999999997--------3-- Q gi|254780807|r 52 EDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK--------T-- 121 (168) Q Consensus 52 ~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~--------L-- 121 (168) +..|.+-+.+... ...+++++++-+|.|+|.. +-.+..... .+++.||-.++-+...++.-.. . T Consensus 58 e~~Y~e~l~h~~l--~~~~~p~~VLiiG~G~G~~--~~~~l~~~~--~~v~~VEiD~~vi~~a~~~~~~~~~~~e~~~~~ 131 (281) T 1mjf_A 58 ERSYHEPLVHPAM--LAHPKPKRVLVIGGGDGGT--VREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNG 131 (281) T ss_dssp THHHHHHHHHHHH--HHSSCCCEEEEEECTTSHH--HHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTT T ss_pred HHHHHHHHHHHHH--HCCCCCCEEEEEECCCHHH--HHHHHHCCC--CEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCC T ss_conf 7777898886887--5099988799992894399--999984388--358997068899999998511142134453035 Q ss_pred C-CCCEEEECHHHHHHHCCCCCCEEEECCCCCHHH Q ss_conf 8-980998042665331247986999914799899 Q gi|254780807|r 122 A-ARGKVFACRIQEAPQMITTCDVISARALADLDT 155 (168) Q Consensus 122 ~-L~~~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ 155 (168) . -+.+++.+.+.+.-...++||+|+.=++.|... T Consensus 132 ~d~rv~v~~~Da~~~l~~~~~yDvIi~D~~~p~~~ 166 (281) T 1mjf_A 132 KHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGP 166 (281) T ss_dssp CCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-- T ss_pred CCCCEEEEECHHHHHHHCCCCCCEEEEECCCCCCC T ss_conf 79966999621899973078878899918998886 No 180 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Probab=93.87 E-value=0.19 Score=27.89 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=46.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCEEEE Q ss_conf 2344311111467733565652275546634787500003899999999973898-09980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~~~~~~~~~d~v~s 147 (168) ..+..|++||.|-|. +--+++.. +..|++||..++=+.+|++....-+.. ..++++.+-+.. ..++..|++ T Consensus 41 ~~~d~VLEIGPG~G~--LT~~Ll~~---~~~v~aiE~D~~l~~~L~e~~~~~~~~~~~~i~~D~~~~~--~~~~~~vVg 112 (299) T 2h1r_A 41 KSSDIVLEIGCGTGN--LTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV--FPKFDVCTA 112 (299) T ss_dssp CTTCEEEEECCTTST--THHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC--CCCCSEEEE T ss_pred CCCCEEEEECCCHHH--HHHHHHHC---CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--CCCCCEEEC T ss_conf 998989996897279--99999823---9907999777089999997543213333332034420000--245434614 No 181 >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Probab=93.83 E-value=0.15 Score=28.53 Aligned_cols=76 Identities=13% Similarity=-0.024 Sum_probs=54.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE--CHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389809980--4266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFA--CRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~--~r~e~~~~~~~~~d~v~sR 148 (168) .+.+|+|+.+|+|==..-||-...+ ..++.+|.+.+|..-+++...++++++.+.. .+........++||.|..= T Consensus 246 ~~~~VLD~CAaPGgKt~~la~~~~~---~~i~a~d~~~~r~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fD~VLlD 322 (429) T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE---AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 322 (429) T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT---CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE T ss_pred CCCEEEEECCCCHHHHHHHHHHCCC---CCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCEEEEE T ss_conf 1441456068804899999986222---4656223426778888777864164311102344331010354566459970 Q ss_pred C Q ss_conf 4 Q gi|254780807|r 149 A 149 (168) Q Consensus 149 A 149 (168) | T Consensus 323 a 323 (429) T 1sqg_A 323 A 323 (429) T ss_dssp C T ss_pred C T ss_conf 7 No 182 >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransferase domain; 2.90A {Escherichia coli} Probab=93.32 E-value=0.4 Score=26.08 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=56.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH-HCCCCCCEEEEC Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533-124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP-QMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~-~~~~~~d~v~sR 148 (168) .+..|+|+-+|.|==..-||=...+ .+.++..|.+.+|+.-|++-..++|+.+ .+.+.....+. .....||.|..= T Consensus 117 ~g~~VLDlCAAPGgKT~~la~~~~~--~g~lvAnD~~~~R~~~L~~nl~r~g~~nv~~~~~d~~~~~~~~~~~fD~ILvD 194 (479) T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNN--EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLD 194 (479) T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTT--CSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCCCCCCEEEEC T ss_conf 9986999478865899999986246--82599653657778899998986389718999354001140131016789965 Q ss_pred C Q ss_conf 4 Q gi|254780807|r 149 A 149 (168) Q Consensus 149 A 149 (168) | T Consensus 195 a 195 (479) T 2frx_A 195 A 195 (479) T ss_dssp C T ss_pred C T ss_conf 9 No 183 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=93.22 E-value=0.13 Score=28.83 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=57.5 Q ss_pred HHHHHHHHHHH-HHH--CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCE--EE Q ss_conf 98986463564-310--01234431111146773356565227554663478750000389999999997389809--98 Q gi|254780807|r 54 FWIRHVEDSLR-VFQ--LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGK--VF 128 (168) Q Consensus 54 ~~~rHi~DSl~-~~~--~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~--vi 128 (168) .|.+|+-+=.. +.. ....+..|+|||+|.|. -|..+.. . +..+.-+|+...-+.. ...-++... .. T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~ileIG~~dG~---lL~~~~~-~-~~~~~Gidps~~~~~~----~~~~~~~~~~~~~ 157 (416) T 3ndi_A 87 VMREHFAMLARDFLATELTGPDPFIVEIGCNDGI---MLRTIQE-A-GVRHLGFEPSSGVAAK----AREKGIRVRTDFF 157 (416) T ss_dssp HHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTT---THHHHHH-T-TCEEEEECSCHHHHHH----HHHTTCCEECSCC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH---HHHHHHH-C-CCCEEEECCCCCHHHH----HCCCCCCEEEECC T ss_conf 9999999999999987434778779983588870---5443342-0-3532442256203444----3035563684042 Q ss_pred E-CHHHHHHHCCCCCCEEEECCC----CCHHHHHHHHHHHHCC Q ss_conf 0-426653312479869999147----9989999984885206 Q gi|254780807|r 129 A-CRIQEAPQMITTCDVISARAL----ADLDTLLEYSFPWLYQ 166 (168) Q Consensus 129 ~-~r~e~~~~~~~~~d~v~sRA~----a~l~~ll~~~~pllk~ 166 (168) . ..+++......+||+|++|.| ..+..+++-...+|++ T Consensus 158 ~~~~~~~~~~~~~k~D~I~~~~vleHi~dp~~fl~~i~~~L~~ 200 (416) T 3ndi_A 158 EKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAP 200 (416) T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCSCHHHHHHHHHHHEEE T ss_pred HHHHHHHHHHCCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHCC T ss_conf 0566788885158751887750053150289999999987466 No 184 >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Probab=93.05 E-value=0.4 Score=26.03 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=56.4 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHH----HCCCCCCEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-99804266533----124798699 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAP----QMITTCDVI 145 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~----~~~~~~d~v 145 (168) .+..|+|..+|.|==.+-++-...+. ..++.+|.+.+|..-+++..+++|+.+ .+++..+.... .....||.| T Consensus 83 ~g~~vLD~CaapGgKt~~i~~~~~~~--~~i~a~d~~~~rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~~~fD~I 160 (274) T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274) T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCCCCCEE T ss_conf 99979990788868899999985386--8338732778899999887876511441002243767666531454457679 Q ss_pred EECC Q ss_conf 9914 Q gi|254780807|r 146 SARA 149 (168) Q Consensus 146 ~sRA 149 (168) ..=| T Consensus 161 LlDa 164 (274) T 3ajd_A 161 LLDA 164 (274) T ss_dssp EEEE T ss_pred EECC T ss_conf 9638 No 185 >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 Probab=93.04 E-value=0.29 Score=26.85 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=53.1 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHH-----CC-CCEEEECHHHH-HHHCC Q ss_conf 0123443111114677335656522-75546634787500003899999999973-----89-80998042665-33124 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKT-----AA-RGKVFACRIQE-APQMI 139 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L-----~L-~~~vi~~r~e~-~~~~~ 139 (168) ..+++++++.||.|+|. ++-.+. .+.. .++++||-.+.-+...+.--... += +.+++.+.+.+ +.+.. T Consensus 74 ~~~~pk~vLiiG~G~G~--~~~~ll~~~~~--~~i~~VEiDp~Vi~~a~~~f~~~~~~~~~dprv~v~~~Da~~~l~~~~ 149 (314) T 1uir_A 74 THPEPKRVLIVGGGEGA--TLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE 149 (314) T ss_dssp HSSCCCEEEEEECTTSH--HHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC T ss_pred HCCCCCEEEEECCCCHH--HHHHHHHCCCC--CEEEEECHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHCC T ss_conf 09997879998898379--99999865996--779874021899999875183013453568706999725999997487 Q ss_pred CCCCEEEECCCCC Q ss_conf 7986999914799 Q gi|254780807|r 140 TTCDVISARALAD 152 (168) Q Consensus 140 ~~~d~v~sRA~a~ 152 (168) .+||+|++=+.-| T Consensus 150 ~~yDvIi~D~~dp 162 (314) T 1uir_A 150 ERYDVVIIDLTDP 162 (314) T ss_dssp CCEEEEEEECCCC T ss_pred CCCCEEEECCCCC T ss_conf 7678899878875 No 186 >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Probab=92.68 E-value=0.42 Score=25.95 Aligned_cols=77 Identities=21% Similarity=0.129 Sum_probs=57.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCE-EEECHHHHH-HHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389809-980426653-3124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGK-VFACRIQEA-PQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~-vi~~r~e~~-~~~~~~~d~v~sR 148 (168) .+..|+|+-+|.|==..-||-...+. +.++..|.+.+|+.-|++-+++++..|. +.+....++ +.....||.|..- T Consensus 105 pg~~VLDlCAAPGgKt~~la~~l~~~--g~l~a~d~~~~R~~~l~~nl~r~g~~n~~v~~~d~~~~~~~~~~~fD~VLvD 182 (456) T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK--GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456) T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC--SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEC T ss_conf 99989881678647999999970089--7588630646777899876875278748999325443552124655579974 Q ss_pred C Q ss_conf 4 Q gi|254780807|r 149 A 149 (168) Q Consensus 149 A 149 (168) | T Consensus 183 a 183 (456) T 3m4x_A 183 A 183 (456) T ss_dssp C T ss_pred C T ss_conf 8 No 187 >2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=92.44 E-value=0.079 Score=30.14 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=47.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC--EEEEC-HHHHHHHCCCCCCEEEE Q ss_conf 3443111114677335656522755466347875000038999999999738980--99804-26653312479869999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG--KVFAC-RIQEAPQMITTCDVISA 147 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~--~vi~~-r~e~~~~~~~~~d~v~s 147 (168) .+.+++|+|.|.|-= ++.+. .. ..-+|....- ++.+..+.+-+. .+.+. +.+..+-....||+|+| T Consensus 4 ~~~~~~DlGcG~G~~--v~~l~-~~-----~~~vd~~~~~---v~~~~~~~~~~g~v~v~~~~~l~~~~~~~~sfD~v~s 72 (182) T 2yui_A 4 GSSGMADFGISAGQF--VAVVW-DK-----SSPVEALKGL---VDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILS 72 (182) T ss_dssp SCCCCSSCCCCTTSE--EEEEE-CT-----TSCSHHHHHH---HHHHHHHHTTTSEEEEEETTHHHHSCCCTTCBSEEEE T ss_pred CCCEEEEECCCCCHH--HHHHH-HC-----CCCCCHHHHH---HHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCCEEEE T ss_conf 887768966899887--89898-52-----8993158999---9999997456880799870000347875457638998 Q ss_pred CCCCC-----HHHHHHHHHHHHCC Q ss_conf 14799-----89999984885206 Q gi|254780807|r 148 RALAD-----LDTLLEYSFPWLYQ 166 (168) Q Consensus 148 RA~a~-----l~~ll~~~~pllk~ 166 (168) ..+-+ ...++.-..+.||+ T Consensus 73 ~~~~~~~~~~~~~~l~e~~rvLKP 96 (182) T 2yui_A 73 GLVPGSTTLHSAEILAEIARILRP 96 (182) T ss_dssp SCSSSCCCCCCHHHHHHHHHHBCT T ss_pred CCEECCCCCCHHHHHHHHHHHHCC T ss_conf 232336762289999999997068 No 188 >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} Probab=92.41 E-value=0.41 Score=26.01 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=56.1 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH--CCCCCCEEEE Q ss_conf 3443111114677335656522755466347875000038999999999738980-998042665331--2479869999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ--MITTCDVISA 147 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~--~~~~~d~v~s 147 (168) .+..|+|+.+|.|==..-|+-...+. ..++.+|.+.+|..-|++-..++|+++ .+........+. ...+||.|.. T Consensus 259 ~g~~VLD~CAaPGGKT~~la~~~~~~--~~i~a~d~~~~rl~~l~~~l~r~g~~~v~~~~~d~~~~~~~~~~~~fD~ILv 336 (450) T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNK--GKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450) T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHC--CCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCCCCEEEE T ss_conf 89858750688657999999986513--8503112548778778999997087631676133010643235565766985 Q ss_pred CC Q ss_conf 14 Q gi|254780807|r 148 RA 149 (168) Q Consensus 148 RA 149 (168) -| T Consensus 337 Da 338 (450) T 2yxl_A 337 DA 338 (450) T ss_dssp EC T ss_pred CC T ss_conf 18 No 189 >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Probab=92.33 E-value=0.41 Score=25.97 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=52.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC---------CCCEEEECHHHHH-H---H Q ss_conf 3443111114677335656522755466347875000038999999999738---------9809980426653-3---1 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA---------ARGKVFACRIQEA-P---Q 137 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~---------L~~~vi~~r~e~~-~---~ 137 (168) .+.+|+|..+|-|-=|+++|-. +..|+++|++.--...+++..+... -+.+++++.+.+. + + T Consensus 83 ~~~~VLD~taGlG~Da~~lA~~-----G~~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~~~~~ri~~~~gDa~~~l~~l~~ 157 (258) T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL-----GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258) T ss_dssp GCCCEEETTCTTCHHHHHHHHT-----TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 8981999078735999999976-----99899996888999999999999996968767887557100759999999996 Q ss_pred CCCCCCEEEECCC Q ss_conf 2479869999147 Q gi|254780807|r 138 MITTCDVISARAL 150 (168) Q Consensus 138 ~~~~~d~v~sRA~ 150 (168) ...+||+|..=-+ T Consensus 158 ~~~~~DvIylDPM 170 (258) T 2r6z_A 158 TQGKPDIVYLDPM 170 (258) T ss_dssp HHCCCSEEEECCC T ss_pred CCCCCCEEEECCC T ss_conf 3899888998899 No 190 >1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Probab=92.23 E-value=0.18 Score=28.05 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=47.2 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898--099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||.|.|.=++-++-.+|+++ +++.| +.+++...... ..++..+..+. ...+|++..| T Consensus 188 ~~~~vlDvGGG~G~~~~~l~~~~P~l~---~~v~D--------lp~v~~~~~~~~~~~~~~~~~~~~---~p~ad~~~l~ 253 (352) T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLK---CIVFD--------RPQVVENLSGSNNLTYVGGDMFTS---IPNADAVLLK 253 (352) T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEE--------CHHHHTTCCCBTTEEEEECCTTTC---CCCCSEEEEE T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCE---EEEEE--------CCHHHHHHCCCCCEEEECCCCCCC---CCCCCEEEEE T ss_conf 871898605886188999997589975---99941--------704414431467469853643357---9854178898 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) .+- T Consensus 254 ~vl 256 (352) T 1fp2_A 254 YIL 256 (352) T ss_dssp SCG T ss_pred EEE T ss_conf 520 No 191 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Probab=92.07 E-value=0.25 Score=27.27 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=35.5 Q ss_pred HHHHHHHHHHH-HHHC-CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHH Q ss_conf 98986463564-3100-123443111114677335656522755466347875000038999999 Q gi|254780807|r 54 FWIRHVEDSLR-VFQL-HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRY 116 (168) Q Consensus 54 ~~~rHi~DSl~-~~~~-~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~ 116 (168) -|.++.+.++. .+.- -..+.+++|||+|.|+-.+..| .+.- ..|+++|-++.-+..++. T Consensus 52 ~~~~~~l~~l~~~~~~g~~~G~~lLDvG~Gpgi~~~l~a--~~~~--~~I~~~D~s~~~~~~~~k 112 (289) T 2g72_A 52 GVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSA--CSHF--EDITMTDFLEVNRQELGR 112 (289) T ss_dssp SHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTG--GGGC--SEEEEECSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH--CCCC--CEEEEECCCHHHHHHHHH T ss_conf 257779999999857888789889995747136788875--6467--814885498999999998 No 192 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Probab=91.84 E-value=0.57 Score=25.15 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=41.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHHH Q ss_conf 234431111146773356565227554663478750000389999999997389-8099804266533 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEAP 136 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~~ 136 (168) ..+..+++||.|.|-=-..|+-. ...|++||..++-+..|++- ..+. +.+++++.+-++. T Consensus 29 ~~~d~VlEIGpG~G~LT~~L~~~-----~~~v~avEiD~~l~~~L~~~--~~~~~n~~ii~~D~l~~~ 89 (244) T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQR-----CNFVTAIEIDHKLCKTTENK--LVDHDNFQVLNKDILQFK 89 (244) T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-----SSEEEEECSCHHHHHHHHHH--TTTCCSEEEECCCGGGCC T ss_pred CCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEEECHHHHHHHHHH--HCCCCCEEEEECHHHCCC T ss_conf 99997999738871999999855-----58306998530177999974--144776577300122256 No 193 >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Probab=91.75 E-value=0.58 Score=25.13 Aligned_cols=75 Identities=16% Similarity=0.033 Sum_probs=50.7 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC---------------------CCEE Q ss_conf 1234431111146773356565227554663478750000389999999997389---------------------8099 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA---------------------RGKV 127 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L---------------------~~~v 127 (168) .+.+.+|+|+|.|.|.=.+-|| -++..|+.+|-+..-+ +.+.++.+. ++.+ T Consensus 66 ~~~~~rvL~pgCG~G~da~~LA-----~~G~~V~gvD~S~~Ai---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 137 (252) T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFA-----DRGHTVVGVEISEIGI---REFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISL 137 (252) T ss_dssp TCCSCEEEETTCTTCTHHHHHH-----HTTCEEEEECSCHHHH---HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE T ss_pred CCCCCEEEEECCCCHHHHHHHH-----HCCCEEEEECCCHHHH---HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCEEE T ss_conf 8999989998987808899998-----4898489981629999---9999875455431222100364202214773689 Q ss_pred EECHHHHHH-HCCCCCCEEEECCCC Q ss_conf 804266533-124798699991479 Q gi|254780807|r 128 FACRIQEAP-QMITTCDVISARALA 151 (168) Q Consensus 128 i~~r~e~~~-~~~~~~d~v~sRA~a 151 (168) +++.....+ .....||.|..|++. T Consensus 138 ~~~D~f~~~~~~~~~~d~i~d~~~~ 162 (252) T 2gb4_A 138 YCCSIFDLPRANIGKFDRIWDRGAL 162 (252) T ss_dssp EESCTTTGGGGCCCCEEEEEESSST T ss_pred EECCHHHCCCCCCCCCCCEEEEEEE T ss_conf 9854332021123564300356777 No 194 >3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A Probab=91.17 E-value=0.6 Score=25.05 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=54.4 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC---C---CCEEEECHHHH-HHHCC Q ss_conf 0123443111114677335656522-755466347875000038999999999738---9---80998042665-33124 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTA---A---RGKVFACRIQE-APQMI 139 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~---L---~~~vi~~r~e~-~~~~~ 139 (168) ..+++.+++-||.|+|- ++-.++ .|.. .++++||-.+.-+...+......+ + ++.++.+.+.+ +.+.. T Consensus 80 ~~~~p~~VLiiGgG~G~--~~~e~lk~~~v--~~v~~VEiD~~Vi~~a~~~~~~~~~~~~~dprv~i~~~Da~~~l~~~~ 155 (294) T 3adn_A 80 AHGHAKHVLIIGGGDGA--MLREVTRHKNV--ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTS 155 (294) T ss_dssp HSTTCCEEEEESCTTCH--HHHHHHTCTTC--CEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCC T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHHCCC--CEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHCC T ss_conf 09985669998898379--99999981996--638997178999999874484113554678857999516899985168 Q ss_pred CCCCEEEECCCCCH Q ss_conf 79869999147998 Q gi|254780807|r 140 TTCDVISARALADL 153 (168) Q Consensus 140 ~~~d~v~sRA~a~l 153 (168) ++||+|+.=++.|. T Consensus 156 ~~yDvIi~D~~dp~ 169 (294) T 3adn_A 156 QTFDVIISDCTDPI 169 (294) T ss_dssp CCEEEEEECC---- T ss_pred CCCCEEEEECCCCC T ss_conf 87778998088778 No 195 >2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A* Probab=90.83 E-value=0.68 Score=24.72 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=54.4 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCC-CCCCCCEEEEEHHHHHHHHHHHHHHHHHC-----CCCEEEECHHHH-HHHCCC Q ss_conf 01234431111146773356565227-55466347875000038999999999738-----980998042665-331247 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQL-SSIEGGLVNLIESKNKKASFLRYVVQKTA-----ARGKVFACRIQE-APQMIT 140 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~~~~v~Lves~~KK~~FL~~~~~~L~-----L~~~vi~~r~e~-~~~~~~ 140 (168) ..+++++++-+|.|+|- ++-.+.. +.. .++++||-.+.-+..-++.-...+ -+++++.+.+.+ +.+... T Consensus 113 ~~~~pk~VLIiGgGdG~--~~rellk~~~~--~~v~~VEID~~Vv~~ak~~f~~~~~~~~dprv~v~~~Da~~~l~~~~~ 188 (321) T 2pt6_A 113 VSKEPKNVLVVGGGDGG--IIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTN 188 (321) T ss_dssp HSSSCCEEEEEECTTCH--HHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCS T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHCCCC--CCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHCCC T ss_conf 19995769998489539--99999972996--414785257999999998626623443687626996169999873667 Q ss_pred CCCEEEECCCCCH Q ss_conf 9869999147998 Q gi|254780807|r 141 TCDVISARALADL 153 (168) Q Consensus 141 ~~d~v~sRA~a~l 153 (168) +||+|+.=++.|. T Consensus 189 ~yDvIi~D~~dp~ 201 (321) T 2pt6_A 189 TYDVIIVDSSDPI 201 (321) T ss_dssp CEEEEEEECCCSS T ss_pred CCCEEEEECCCCC T ss_conf 6677999379988 No 196 >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Probab=90.69 E-value=0.28 Score=26.92 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=45.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 234431111146773356565227554663478750000389999999997389--809980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) +...+++|+|.|.|.=.+-++-.+|+++ +++.| +-+++...+. +++.+.+...+. ....|+++. T Consensus 208 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~---~~~~D--------lp~vi~~~~~~~rv~~~~gD~~~~---~~~~d~~~l 273 (372) T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIK---GINFD--------LPQVIENAPPLSGIEHVGGDMFAS---VPQGDAMIL 273 (372) T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEE--------CHHHHTTCCCCTTEEEEECCTTTC---CCCEEEEEE T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCE---EEEEE--------CHHHHHHCCCCCCCEEECCCCCCC---CCCCCEEEE T ss_conf 4786799807984189999999789974---99971--------678776413567727966752136---776765999 Q ss_pred CCC Q ss_conf 147 Q gi|254780807|r 148 RAL 150 (168) Q Consensus 148 RA~ 150 (168) +.+ T Consensus 274 ~~i 276 (372) T 1fp1_D 274 KAV 276 (372) T ss_dssp ESS T ss_pred EEE T ss_conf 974 No 197 >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Probab=90.27 E-value=0.53 Score=25.36 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=53.3 Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC----------CCEEEECHHHH-HHHCCCC Q ss_conf 431111146773356565227554663478750000389999999997389----------80998042665-3312479 Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA----------RGKVFACRIQE-APQMITT 141 (168) Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L----------~~~vi~~r~e~-~~~~~~~ 141 (168) .+|+|.-.|-|-=++++|-. +..|+++|++.--+..|++..+.... +.+++++...+ +.+.... T Consensus 90 ~~VlDaTaGlG~Da~vlA~~-----G~~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~Ds~~~L~~~~~~ 164 (258) T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (258) T ss_dssp CCEEETTCTTCHHHHHHHHH-----TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSC T ss_pred CEEEECCCCCHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCHHHHHHHCCCC T ss_conf 84898787742999999977-----9968998479999999999999987273778998632378738799998626766 Q ss_pred CCEEEE Q ss_conf 869999 Q gi|254780807|r 142 CDVISA 147 (168) Q Consensus 142 ~d~v~s 147 (168) ||+|.- T Consensus 165 ~DvIYl 170 (258) T 2oyr_A 165 PQVVYL 170 (258) T ss_dssp CSEEEE T ss_pred CCEEEE T ss_conf 887998 No 198 >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Probab=90.21 E-value=0.79 Score=24.36 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=43.3 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHH Q ss_conf 234431111146773356565227554663478750000389999999997389--809980426653 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEA 135 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~ 135 (168) ..+..|+.||.|.|- +--+++. .+.+|++||...+-+..|++....... +.+++++.+-+. T Consensus 27 ~~~d~VlEIGPG~G~--LT~~Ll~---~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~ii~~D~l~~ 89 (285) T 1zq9_A 27 RPTDVVLEVGPGTGN--MTVKLLE---KAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285) T ss_dssp CTTCEEEEECCTTST--THHHHHH---HSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS T ss_pred CCCCEEEEECCCCHH--HHHHHHH---CCCCEEEEEECHHHHHHHHHHHHCCCCCCCEEEECHHHHHC T ss_conf 999979996897219--9999980---49966999987899999998762012100344540665411 No 199 >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Probab=89.92 E-value=0.73 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=34.0 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 44311111467733565652275546634787500003899999999973898099804 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFAC 130 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~ 130 (168) +..|++||.|-|. +--+++.. +..|++||...+-+..|++-.. +.++.+++. T Consensus 47 ~~~VlEIGpG~G~--LT~~L~~~---~~~v~avE~D~~l~~~L~~~~~--~~~~~~i~~ 98 (271) T 3fut_A 47 TGPVFEVGPGLGA--LTRALLEA---GAEVTAIEKDLRLRPVLEETLS--GLPVRLVFQ 98 (271) T ss_dssp CSCEEEECCTTSH--HHHHHHHT---TCCEEEEESCGGGHHHHHHHTT--TSSEEEEES T ss_pred CCCEEEECCCCCH--HHHHHHHC---CCCEEEEEECHHHHHHHHHHHH--HCCHHHHHH T ss_conf 9988996797719--99999960---8967999837067888875433--301033346 No 200 >2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A* Probab=89.71 E-value=1.1 Score=23.56 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=54.3 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-----CCCEEEECHHHH-HHHCCC Q ss_conf 0123443111114677335656522-755466347875000038999999999738-----980998042665-331247 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTA-----ARGKVFACRIQE-APQMIT 140 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-----L~~~vi~~r~e~-~~~~~~ 140 (168) ..+++++++=||-|+|- ++-.+. ++.. .++++||-.+.-+..-++--...+ -+.+++.+.+.+ +.+... T Consensus 75 ~~~~pk~vLiiGgG~G~--~~~ellk~~~~--~~i~~VEiD~~Vi~~a~~~f~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 150 (283) T 2i7c_A 75 VSKEPKNVLVVGGGDGG--IIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTN 150 (283) T ss_dssp TSSSCCEEEEEECTTSH--HHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCS T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHCCCC--CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHCCC T ss_conf 29982449998388349--99999974996--379997478999999998746502422487652896068999974688 Q ss_pred CCCEEEECCCCCH Q ss_conf 9869999147998 Q gi|254780807|r 141 TCDVISARALADL 153 (168) Q Consensus 141 ~~d~v~sRA~a~l 153 (168) +||+|+.=++.|. T Consensus 151 ~yDvIi~D~~dp~ 163 (283) T 2i7c_A 151 TYDVIIVDSSDPI 163 (283) T ss_dssp CEEEEEEECCCTT T ss_pred CCCEEEEECCCCC T ss_conf 7777999479988 No 201 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Probab=89.60 E-value=0.3 Score=26.78 Aligned_cols=75 Identities=8% Similarity=-0.006 Sum_probs=41.8 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE-----------EECHHH--HHHH Q ss_conf 344311111467733565652275546634787500003899999999973898099-----------804266--5331 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKV-----------FACRIQ--EAPQ 137 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~v-----------i~~r~e--~~~~ 137 (168) .+.+|+|+|.|-| |-...-.... ...|+.+|.+..-+.-.++-..++..+... +.+... .+.+ T Consensus 48 ~~~~VLDlgcG~G--gDl~K~~~~~--~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 123 (302) T 2vdw_A 48 NKRKVLAIDFGNG--ADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE 123 (302) T ss_dssp SCCEEEETTCTTT--TTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT T ss_pred CCCEEEEEEEEEC--HHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHHHHHHHH T ss_conf 8997999950004--5279999669--98899997989999999999997212433100013305999861132444553 Q ss_pred --CCCCCCEEEECC Q ss_conf --247986999914 Q gi|254780807|r 138 --MITTCDVISARA 149 (168) Q Consensus 138 --~~~~~d~v~sRA 149 (168) ...+||+|++.- T Consensus 124 ~~~~~~FDvVs~qf 137 (302) T 2vdw_A 124 VFYFGKFNIIDWQF 137 (302) T ss_dssp TCCSSCEEEEEEES T ss_pred HCCCCCEEEEEECC T ss_conf 04789756999814 No 202 >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Probab=89.14 E-value=1.2 Score=23.31 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=54.8 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--C---CCEEEECHHHH-HHHCCC Q ss_conf 0123443111114677335656522-755466347875000038999999999738--9---80998042665-331247 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKTA--A---RGKVFACRIQE-APQMIT 140 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L~--L---~~~vi~~r~e~-~~~~~~ 140 (168) ..+++++++=||.|+|. ++-.+. +|.. .++++||-.+.-+..-++...... + +++++.+.+-+ +.+... T Consensus 105 ~~~~pk~VLIiGgGdG~--~~rellk~~~v--~~v~~VEID~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~~~~ 180 (314) T 2b2c_A 105 AHPDPKRVLIIGGGDGG--ILREVLKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKN 180 (314) T ss_dssp HSSSCCEEEEESCTTSH--HHHHHTTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTT T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHCCCC--CEEEEEEECHHHHHHHHHHCHHHCCCCCCCCEEEEECHHHHHHHCCCC T ss_conf 39997879998898469--99999974995--458999608899999976363322545666527997108999741788 Q ss_pred CCCEEEECCCCCH Q ss_conf 9869999147998 Q gi|254780807|r 141 TCDVISARALADL 153 (168) Q Consensus 141 ~~d~v~sRA~a~l 153 (168) +||+|+.=++.|. T Consensus 181 ~yDvII~D~~dp~ 193 (314) T 2b2c_A 181 EFDVIITDSSDPV 193 (314) T ss_dssp CEEEEEECCC--- T ss_pred CCCEEEEECCCCC T ss_conf 8888999689987 No 203 >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Probab=88.09 E-value=1.4 Score=22.90 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=53.3 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHH--CC---CCEEEECHHHH-HHHCCC Q ss_conf 0123443111114677335656522-75546634787500003899999999973--89---80998042665-331247 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKT--AA---RGKVFACRIQE-APQMIT 140 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L--~L---~~~vi~~r~e~-~~~~~~ 140 (168) ..+.+++++=||-|+|... -.+. +|.. .++++||-.+.-+...++.-... .+ +++++...+-. +..... T Consensus 72 ~~~~pk~VLiiGgG~G~~~--~~~l~~~~~--~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~~~~ 147 (275) T 1iy9_A 72 THPNPEHVLVVGGGDGGVI--REILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSEN 147 (275) T ss_dssp HSSSCCEEEEESCTTCHHH--HHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCS T ss_pred CCCCCCEEEEEECCCHHHH--HHHHHCCCC--CEEEEEEECHHHHHHHHHHCHHHCCCCCCCCCEEEECHHHHHHHCCCC T ss_conf 0999675999907963999--999965996--469999708899999998572313532387743898858998750567 Q ss_pred CCCEEEECCCCCH Q ss_conf 9869999147998 Q gi|254780807|r 141 TCDVISARALADL 153 (168) Q Consensus 141 ~~d~v~sRA~a~l 153 (168) +||+|+.=++.|. T Consensus 148 ~yDvIi~D~~~p~ 160 (275) T 1iy9_A 148 QYDVIMVDSTEPV 160 (275) T ss_dssp CEEEEEESCSSCC T ss_pred CCCEEEEECCCCC T ss_conf 7678999389988 No 204 >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* Probab=88.07 E-value=1.3 Score=23.04 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=59.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHH----HC-CC Q ss_conf 999989864635643100123443111114677335656522-7554663478750000389999999997----38-98 Q gi|254780807|r 51 VEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQK----TA-AR 124 (168) Q Consensus 51 ~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~----L~-L~ 124 (168) .+.+|..-+.+-.. ...+.+++++=||.|+|. ++-.+. +|.. ..+++||-.+.-+..-++.-.. +. -+ T Consensus 77 de~~YhE~l~h~pl--~~~~~pk~VLIiGgG~G~--~~~ellk~~~~--~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dpR 150 (304) T 2o07_A 77 DEFSYQEMIANLPL--CSHPNPRKVLIIGGGDGG--VLREVVKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSK 150 (304) T ss_dssp THHHHHHHHHHHHH--TTSSSCCEEEEEECTTSH--HHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTT T ss_pred CHHHHHHHHHHHHH--HCCCCCCEEEEECCCCHH--HHHHHHHCCCC--CEEEEECCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 48888898887998--619997869998799459--99999865985--3268760469999999985555334435772 Q ss_pred CEEEECHHHH-HHHCCCCCCEEEECCCCCHH Q ss_conf 0998042665-33124798699991479989 Q gi|254780807|r 125 GKVFACRIQE-APQMITTCDVISARALADLD 154 (168) Q Consensus 125 ~~vi~~r~e~-~~~~~~~~d~v~sRA~a~l~ 154 (168) ++++.+.+-+ +.+...+||+|+.=++.|.. T Consensus 151 v~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~ 181 (304) T 2o07_A 151 LTLHVGDGFEFMKQNQDAFDVIITDSSDPMG 181 (304) T ss_dssp EEEEESCHHHHHHTCSSCEEEEEEECC---- T ss_pred EEEEEHHHHHHHHHCCCCCCEEEECCCCCCC T ss_conf 4899607999997477778889990899886 No 205 >1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A* Probab=86.98 E-value=0.38 Score=26.17 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=44.2 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 234431111146773356565227554663478750000389999999997389--809980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) ....+++|+|.|.|.=++-++-.+|+++ ++..|--. ++..... +...+..+..+ ....+|+++. T Consensus 199 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~---~~~~Dlp~--------v~~~~~~~~r~~~~~~d~~~---~~p~~D~~~~ 264 (365) T 1kyz_A 199 EGLKSLVDVGGGTGAVINTIVSKYPTIK---GINFDLPH--------VIEDAPSYPGVEHVGGDMFV---SIPKADAVFM 264 (365) T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSE---EEEEECTT--------TTTTCCCCTTEEEEECCTTT---CCCCCSCEEC T ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCE---EEECCCHH--------HHHHCCCCCCEEEECCCCCC---CCCCCCEEEE T ss_conf 4871799825897389888998799806---99744817--------65430347766896155456---7887645888 Q ss_pred CCCC Q ss_conf 1479 Q gi|254780807|r 148 RALA 151 (168) Q Consensus 148 RA~a 151 (168) +.+- T Consensus 265 ~~~l 268 (365) T 1kyz_A 265 KWIC 268 (365) T ss_dssp SSSS T ss_pred EEEE T ss_conf 8542 No 206 >2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A* Probab=85.63 E-value=1.9 Score=22.10 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=56.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH-----HC-CC-- Q ss_conf 99898646356431001234431111146773356565227554663478750000389999999997-----38-98-- Q gi|254780807|r 53 DFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK-----TA-AR-- 124 (168) Q Consensus 53 ~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~-----L~-L~-- 124 (168) .+|.+.+..... ....+++++=||-|+| |++-.++.... .++++||-.+.-+.+-++-... ++ .+ T Consensus 173 ~~Y~e~l~~~~l---~~~~pk~VLIIGGGdG--~~~revlk~~~--~~V~~VEID~~Vve~akk~~~~~~~~~~d~~r~~ 245 (364) T 2qfm_A 173 LAYTRAIMGSGK---EDYTGKDVLILGGGDG--GILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGD 245 (364) T ss_dssp HHHHHHHTTTTC---CCCTTCEEEEEECTTC--HHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEET T ss_pred HHHHHHHHHHHH---HCCCCCEEEEEECCCH--HHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 889999862575---4589885999969943--99999986178--4289971038999999986565400121084423 Q ss_pred -CEEEECHHHH-HH---HCCCCCCEEEECCCCC Q ss_conf -0998042665-33---1247986999914799 Q gi|254780807|r 125 -GKVFACRIQE-AP---QMITTCDVISARALAD 152 (168) Q Consensus 125 -~~vi~~r~e~-~~---~~~~~~d~v~sRA~a~ 152 (168) .+++...+-+ +. +...+||+|+.=++.+ T Consensus 246 rv~iii~Da~~~l~~~~~~~~~yDvIi~Dl~d~ 278 (364) T 2qfm_A 246 CYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 278 (364) T ss_dssp TEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS T ss_pred CCCEEHHHHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 443355779999997453247502999807887 No 207 >1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Probab=85.57 E-value=1.9 Score=22.08 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=44.5 Q ss_pred CCEEECCCC-CHHHHHHHHC--CCCCC--CCEEEEEHHHHHHHHH----HHHHHHHHCCCCEEE--ECHHHHHHHCCCCC Q ss_conf 311111467-7335656522--75546--6347875000038999----999999738980998--04266533124798 Q gi|254780807|r 74 IWIDLGSGG-GFPGIITSIQ--LSSIE--GGLVNLIESKNKKASF----LRYVVQKTAARGKVF--ACRIQEAPQMITTC 142 (168) Q Consensus 74 ~ilDiGSGa-GfPGi~laI~--~p~~~--~~~v~Lves~~KK~~F----L~~~~~~L~L~~~vi--~~r~e~~~~~~~~~ 142 (168) ++.=||.|+ +||+.....+ .+++. ...++|+|-...|... .+.++++.+.+.++. ..|.|-+. .. T Consensus 14 KI~iIGaGS~~~~~~l~~~i~~~~~L~~~~~~l~L~Did~~rL~~~~~l~~~~~~~~~~~~~v~~Ttdr~eAl~----gA 89 (483) T 1vjt_A 14 KISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNSPVKIVKTSSLDEAID----GA 89 (483) T ss_dssp EEEEETTTSHHHHHHHHHHHHHSTTTCSTTEEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHT----TC T ss_pred EEEEECCCHHHHHHHHHHHHHHCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC----CC T ss_conf 89999986576599999999727212888777999689989999999999999996198908999789999976----99 Q ss_pred CEEEEC Q ss_conf 699991 Q gi|254780807|r 143 DVISAR 148 (168) Q Consensus 143 d~v~sR 148 (168) |+|++- T Consensus 90 DfVi~~ 95 (483) T 1vjt_A 90 DFIINT 95 (483) T ss_dssp SEEEEC T ss_pred CEEEEE T ss_conf 999980 No 208 >1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 Probab=85.16 E-value=0.82 Score=24.25 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=41.7 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHH Q ss_conf 646356431001234431111146773356565227554663478750000389999999997389--80998042665 Q gi|254780807|r 58 HVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQE 134 (168) Q Consensus 58 Hi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~ 134 (168) .|++++. ...+..++.||.|-|- +--+++.. ...|++||...+-+..|+. +... +.+++++.+-+ T Consensus 12 ~iv~~~~----~~~~d~vlEIGpG~G~--LT~~Ll~~---~~~v~avE~D~~l~~~L~~---~~~~~~~~~ii~~D~l~ 78 (252) T 1qyr_A 12 SIVSAIN----PQKGQAMVEIGPGLAA--LTEPVGER---LDQLTVIELDRDLAARLQT---HPFLGPKLTIYQQDAMT 78 (252) T ss_dssp HHHHHHC----CCTTCCEEEECCTTTT--THHHHHTT---CSCEEEECCCHHHHHHHHT---CTTTGGGEEEECSCGGG T ss_pred HHHHHCC----CCCCCEEEEECCCCCH--HHHHHHHC---CCCEEEEEECCHHHHHHHH---HHHCCCCEEEEECHHHH T ss_conf 9998448----9997969998998729--99999816---8976999962128899998---76317762565011455 No 209 >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Probab=84.82 E-value=0.45 Score=25.73 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=48.8 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEE Q ss_conf 234431111146773356565227554663478750000389999999997389--809980426653312479869999 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISA 147 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~s 147 (168) +...+++|||.|.|.-.+.++=.+|+++ ++++|...- + .+.....-++ +..++.+...+ ....+|+++. T Consensus 183 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~---~~~~D~~~~-~--~~~~~~~~~~~~ri~~~~~d~~~---~~p~~D~v~~ 253 (348) T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQ---GVLLDRAEV-V--ARHRLDAPDVAGRWKVVEGDFLR---EVPHADVHVL 253 (348) T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEE---EEEEECHHH-H--TTCCCCCGGGTTSEEEEECCTTT---CCCCCSEEEE T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCEE---EEECCCHHH-H--HHHHHHCCCCCCCEEEECCCCCC---CCCCCEEEEE T ss_conf 8776699758998689999884389838---995361777-6--66665334678836884476323---6877509987 Q ss_pred CCCCC-H-----HHHHHHHHHHHC Q ss_conf 14799-8-----999998488520 Q gi|254780807|r 148 RALAD-L-----DTLLEYSFPWLY 165 (168) Q Consensus 148 RA~a~-l-----~~ll~~~~pllk 165 (168) +.+-. + ..++.-+..-|+ T Consensus 254 ~~vlh~~~d~~~~~iL~~~~~~L~ 277 (348) T 3lst_A 254 KRILHNWGDEDSVRILTNCRRVMP 277 (348) T ss_dssp ESCGGGSCHHHHHHHHHHHHHTCC T ss_pred ECCHHCCCHHHHHHHHHHHHHHCC T ss_conf 510213999999999999999669 No 210 >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Probab=84.77 E-value=1.3 Score=23.14 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=46.0 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 34431111146773356565227554663478750000389999999997389--8099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ...+++|||.|.|.=++-++=.+|+++ +++.| +.+++...+. +++++.+...+ + ...+|+++.| T Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~D--------lp~vi~~a~~~~ri~~~~gDff~--~-~p~~D~~~l~ 258 (358) T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLK---CTVFD--------QPQVVGNLTGNENLNFVGGDMFK--S-IPSADAVLLK 258 (358) T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSE---EEEEE--------CHHHHSSCCCCSSEEEEECCTTT--C-CCCCSEEEEE T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCC---EEEEC--------CHHHHHCCCCCCCEEEECCCCCC--C-CCCCCEEEEE T ss_conf 875699808985399999998689976---27841--------77887454767727997177667--7-8886779986 Q ss_pred CCC Q ss_conf 479 Q gi|254780807|r 149 ALA 151 (168) Q Consensus 149 A~a 151 (168) -+- T Consensus 259 ~vl 261 (358) T 1zg3_A 259 WVL 261 (358) T ss_dssp SCG T ss_pred ECC T ss_conf 123 No 211 >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Probab=83.49 E-value=2.4 Score=21.54 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=52.6 Q ss_pred CCCCEEECCCCC-HHHHHHHHC--CCCCCCCEEEEEHHHHHHH----HHHHHHHHHHCCCCEEE--ECHHHHHHHCCCCC Q ss_conf 443111114677-335656522--7554663478750000389----99999999738980998--04266533124798 Q gi|254780807|r 72 PSIWIDLGSGGG-FPGIITSIQ--LSSIEGGLVNLIESKNKKA----SFLRYVVQKTAARGKVF--ACRIQEAPQMITTC 142 (168) Q Consensus 72 ~~~ilDiGSGaG-fPGi~laI~--~p~~~~~~v~Lves~~KK~----~FL~~~~~~L~L~~~vi--~~r~e~~~~~~~~~ 142 (168) +-++.=||.|+- .|+++..++ .|+++...+.|+|-.+.|. .+.+.++++.+.+.++. ..|.|-+. .. T Consensus 28 ~~KI~iIGaGS~~t~~li~~~~~~~~~l~~~ei~L~DId~~rL~~~~~~~~~~~~~~~~~~~v~~ttD~~eAl~----gA 103 (472) T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----DV 103 (472) T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----SC T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHC----CC T ss_conf 62399989865656899999996053278888999828888999999999999996099807999589999857----99 Q ss_pred CEEEECC Q ss_conf 6999914 Q gi|254780807|r 143 DVISARA 149 (168) Q Consensus 143 d~v~sRA 149 (168) |+|+.-+ T Consensus 104 DfVi~t~ 110 (472) T 1u8x_X 104 DFVMAHI 110 (472) T ss_dssp SEEEECC T ss_pred CEEEEEE T ss_conf 9999841 No 212 >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Probab=83.11 E-value=2.5 Score=21.45 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=53.8 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHH----C-CCCEEEECHHHH-HHHCCC Q ss_conf 0123443111114677335656522-75546634787500003899999999973----8-980998042665-331247 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQKT----A-ARGKVFACRIQE-APQMIT 140 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~~L----~-L~~~vi~~r~e~-~~~~~~ 140 (168) ..+.+++++=||.|+|- ++-.+. +|.. .++++||-.+.-+...++--... . -+.+++.+.+.+ +.+... T Consensus 87 ~~~~pk~VLiiGgG~G~--~~~e~l~~~~~--~~v~~VEID~~Vi~~a~~~~~~~~~~~~d~rv~ii~~Da~~~l~~~~~ 162 (296) T 1inl_A 87 LHPNPKKVLIIGGGDGG--TLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKN 162 (296) T ss_dssp HSSSCCEEEEEECTTCH--HHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSS T ss_pred HCCCCCEEEEECCCCHH--HHHHHHHCCCC--CCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCC T ss_conf 19997879998798279--99999964997--717886357899999998767622433699608996148999974788 Q ss_pred CCCEEEECCCCCH Q ss_conf 9869999147998 Q gi|254780807|r 141 TCDVISARALADL 153 (168) Q Consensus 141 ~~d~v~sRA~a~l 153 (168) +||+|+.=++.|. T Consensus 163 ~yDvIi~D~~dp~ 175 (296) T 1inl_A 163 EFDVIIIDSTDPT 175 (296) T ss_dssp CEEEEEEEC---- T ss_pred CCCEEEEECCCCC T ss_conf 7768999089865 No 213 >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Probab=78.89 E-value=0.14 Score=28.72 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=38.6 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEECHHHHHH Q ss_conf 234431111146773356565227554663478750000389999999997389--8099804266533 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFACRIQEAP 136 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~~r~e~~~ 136 (168) ..+..|++||.|-|-=--. ++. ...+|++||...+-+..++ +++.. +.+++++.+.++. T Consensus 28 ~~~d~VlEIGpG~G~LT~~--L~~---~~~~v~aiE~D~~l~~~l~---~~~~~~~n~~ii~~D~l~~~ 88 (245) T 1yub_A 28 KETDTVYEIGTGKGHLTTK--LAK---ISKQVTSIELDSHLFNLSS---EKLKLNTRVTLIHQDILQFQ 88 (245) T ss_dssp CSSEEEEECSCCCSSCSHH--HHH---HSSEEEESSSSCSSSSSSS---CTTTTCSEEEECCSCCTTTT T ss_pred CCCCEEEEECCCHHHHHHH--HHH---CCCCCEEECCCHHHHHHHH---HHHHCCCCCHHHHCCHHCCC T ss_conf 9999689979973599999--996---1650040340446689887---55411340002201100014 No 214 >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Probab=76.43 E-value=4.2 Score=20.17 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=44.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC----------CCCEEEECHHHHHHHCCC Q ss_conf 3443111114677335656522755466347875000038999999999738----------980998042665331247 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTA----------ARGKVFACRIQEAPQMIT 140 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~----------L~~~vi~~r~e~~~~~~~ 140 (168) ...+++|+|.|-| .+.-.++.....-..+..+|-+.+-. +.+...|. +.++.+++.+.+.-.... T Consensus 721 ~akkVlDLGCGEG--kLL~~LL~~~~~iE~IvGVDIS~~~L---e~A~~rL~~dl~~~r~r~~~V~LyqGSIt~~D~RL~ 795 (950) T 3htx_A 721 SASTLVDFGCGSG--SLLDSLLDYPTSLQTIIGVDISPKGL---ARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLH 795 (950) T ss_dssp CCSEEEEETCSSS--HHHHHHTSSCCCCCEEEEEESCHHHH---HHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSC T ss_pred CCCEEEECCCCCC--HHHHHHHCCCCCEEEEEEEECCHHHH---HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCC T ss_conf 9988997388870--99999862876600799997799999---999874484113544576568999446555243104 Q ss_pred CCCEEEECCC Q ss_conf 9869999147 Q gi|254780807|r 141 TCDVISARAL 150 (168) Q Consensus 141 ~~d~v~sRA~ 150 (168) .||.+|+=-| T Consensus 796 GfDAvV~iEV 805 (950) T 3htx_A 796 DVDIGTCLEV 805 (950) T ss_dssp SCCEEEEESC T ss_pred CCCEEEEEEE T ss_conf 8876998987 No 215 >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, NAD dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Probab=76.22 E-value=4.2 Score=20.14 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=36.1 Q ss_pred CEEECCCC-CHHHHHHHHC--CCCCCCCEEEEEHHHHHHHHHHHHHHHHHC-CCCEE--EECHHHHHHHCCCCCCEEEEC Q ss_conf 11111467-7335656522--755466347875000038999999999738-98099--804266533124798699991 Q gi|254780807|r 75 WIDLGSGG-GFPGIITSIQ--LSSIEGGLVNLIESKNKKASFLRYVVQKTA-ARGKV--FACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 75 ilDiGSGa-GfPGi~laI~--~p~~~~~~v~Lves~~KK~~FL~~~~~~L~-L~~~v--i~~r~e~~~~~~~~~d~v~sR 148 (168) +.=||+|+ |||.+..+++ .+.+....+.|+|-+..|........+++- -+..+ ...+-|.+ ...|+|+.- T Consensus 5 I~iIGaGS~~~~~~~~~~~~~~~~l~~~ei~L~DId~~rl~~~~~l~~~~~~~~~~v~~t~d~~~al----~gAD~Vv~t 80 (417) T 1up7_A 5 IAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAV----VDAKYVIFQ 80 (417) T ss_dssp EEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHH----TTCSEEEEC T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH----CCCCEEEEE T ss_conf 9998978889999999998261006899899985998999999999986640697299977889984----799999994 Q ss_pred CC Q ss_conf 47 Q gi|254780807|r 149 AL 150 (168) Q Consensus 149 A~ 150 (168) |- T Consensus 81 ~~ 82 (417) T 1up7_A 81 FR 82 (417) T ss_dssp CC T ss_pred EC T ss_conf 23 No 216 >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Probab=75.44 E-value=4.4 Score=20.01 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=42.9 Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH Q ss_conf 0430899999898646356431001234431111146773356565227554663478750000389999999997 Q gi|254780807|r 45 LVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK 120 (168) Q Consensus 45 Lts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~ 120 (168) ++|.+|.-.- +..++.-.......++++=+|+||+--++..+...- ....++++.++..|..-+.+.... T Consensus 104 l~G~NTD~~G----f~~~l~~~~~~~~~~~vlilGaGGaarai~~al~~~--~~~~i~i~nR~~~~a~~l~~~~~~ 173 (283) T 3jyo_A 104 TTGHNTDVSG----FGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALADVINN 173 (283) T ss_dssp EEEECHHHHH----HHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSHHHHHHHHHHHHH T ss_pred EEEECCCCHH----HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH T ss_conf 7754577234----544000235456787579966661678899999974--986000013678999999999976 No 217 >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Probab=73.60 E-value=4.9 Score=19.74 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=42.6 Q ss_pred HHHHHHHHHHHHCCC--CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH Q ss_conf 986463564310012--344311111467733565652275546634787500003899999999973898099804266 Q gi|254780807|r 56 IRHVEDSLRVFQLHP--YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ 133 (168) Q Consensus 56 ~rHi~DSl~~~~~~~--~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e 133 (168) ..-|+|.+.+.+... .+..|+|||-|.|. +--++.. ..+..+++++|....=+.+|++... +-+..+++..+- T Consensus 41 ~~kIv~~l~l~~~~~~~~~~~IlEIgPG~G~--lT~~Ll~-~~~pk~~i~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l 115 (353) T 1i4w_A 41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGI--QSAIFYN-KYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPY 115 (353) T ss_dssp HHHHHHHHCGGGTCCCTTTCEEEEESCTTCH--HHHHHHH-HHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTT T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEECCCCCH--HHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHC--CCCCEEEECCHH T ss_conf 9999987367633357789969998999889--9999985-2588769999777889999998714--588479946456 No 218 >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Probab=72.69 E-value=0.41 Score=25.97 Aligned_cols=81 Identities=7% Similarity=-0.018 Sum_probs=46.5 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH---HHHCCCCEEEECHHHHHHHCCCCCCE Q ss_conf 012344311111467733565652275546634787500003899999999---97389809980426653312479869 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVV---QKTAARGKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~---~~L~L~~~vi~~r~e~~~~~~~~~d~ 144 (168) ..+++++++-||.|+| |.+-.++. . ..++++||-.++-+...++-- ..-..+..+-.+| +-+.....+||+ T Consensus 69 ~hp~pk~VLiIGgG~G--~~~re~lk-~--~~~v~~VEiD~~Vi~~a~~~fp~~~d~r~~~~~~D~~-~~l~~~~~~yDv 142 (262) T 2cmg_A 69 TKKELKEVLIVDGFDL--ELAHQLFK-Y--DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDL 142 (262) T ss_dssp TSSCCCEEEEESSCCH--HHHHHHTT-S--SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEES-SGGGSCCCCEEE T ss_pred CCCCCCEEEEECCCCH--HHHHHHHC-C--CCEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHHHCCCCCCE T ss_conf 3998677999459966--99999845-8--9747999838999999998684223543360155799-998615467788 Q ss_pred EEECCCCCHH Q ss_conf 9991479989 Q gi|254780807|r 145 ISARALADLD 154 (168) Q Consensus 145 v~sRA~a~l~ 154 (168) |+.=+..|.. T Consensus 143 Ii~D~~dp~~ 152 (262) T 2cmg_A 143 IFCLQEPDIH 152 (262) T ss_dssp EEESSCCCHH T ss_pred EEECCCCCCH T ss_conf 9988999731 No 219 >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca YX} Probab=72.07 E-value=2.5 Score=21.48 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=43.2 Q ss_pred CCCEEECCCCCHHHHHHHHC---CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHH------HHHCCCCCC Q ss_conf 43111114677335656522---755466347875000038999999999738980998042665------331247986 Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQ---LSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQE------APQMITTCD 143 (168) Q Consensus 73 ~~ilDiGSGaGfPGi~laI~---~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~------~~~~~~~~d 143 (168) ..++|+|||-|-.|-+..++ .|+- +|+.||...--+..-+......+ +..++...+.+ .+.....|| T Consensus 79 rqfLDlGcG~gt~~~~he~a~~~~P~a---rVv~vD~dp~~la~ara~l~~~~-~~~~v~aD~~~p~~il~~~~~~~~~D 154 (274) T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDP-NTAVFTADVRDPEYILNHPDVRRMID 154 (274) T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCT-TEEEEECCTTCHHHHHHSHHHHHHCC T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHCCHHHHCCCC T ss_conf 789994738898641999999878997---79999597889999876504799-76899743027343422524533478 Q ss_pred -----EEEECCC Q ss_conf -----9999147 Q gi|254780807|r 144 -----VISARAL 150 (168) Q Consensus 144 -----~v~sRA~ 150 (168) .|++-++ T Consensus 155 ~~~Pvav~~~~v 166 (274) T 2qe6_A 155 FSRPAAIMLVGM 166 (274) T ss_dssp TTSCCEEEETTT T ss_pred CCCCEEEEEEEE T ss_conf 667726866700 No 220 >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Probab=71.41 E-value=5.6 Score=19.44 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=30.7 Q ss_pred CCEEECCCC-CHHHHHHHH--CCCCCCCCEEEEEHHHHHHHHHH----HHHHHHHCCCCEEE Q ss_conf 311111467-733565652--27554663478750000389999----99999738980998 Q gi|254780807|r 74 IWIDLGSGG-GFPGIITSI--QLSSIEGGLVNLIESKNKKASFL----RYVVQKTAARGKVF 128 (168) Q Consensus 74 ~ilDiGSGa-GfPGi~laI--~~p~~~~~~v~Lves~~KK~~FL----~~~~~~L~L~~~vi 128 (168) ++.=||.|+ |||..+++. ..+.+....+.|+|-...|.... ++++++.+.+.++. T Consensus 5 KI~iIGaGs~~~~~~~~~~~~~~~~l~~~ei~L~Did~~rl~~~~~~~~~~~~~~~~~~~i~ 66 (480) T 1obb_A 5 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE 66 (480) T ss_dssp EEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 59999987333069999999847578999899986987799999999999998729982899 No 221 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Probab=70.74 E-value=1.9 Score=22.13 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=39.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 344311111467733565652275546634787500003899999999973898099804266533124798699991 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) .+.+|+|-++|.| ++..++..-......++.+|-...-+ ++--.+.++++..-... ...+||+|++- T Consensus 39 ~~~~IlDPacGsG--~FL~~~~~~~~~~~~i~G~did~~~~--------~la~~~~i~~~D~l~~~-~~~~fD~VigN 105 (421) T 2ih2_A 39 RGGRVLEPACAHG--PFLRAFREAHGTAYRFVGVEIDPKAL--------DLPPWAEGILADFLLWE-PGEAFDLILGN 105 (421) T ss_dssp TTCEEEEETCTTC--HHHHHHHHHHCSCSEEEEEESCTTTC--------CCCTTEEEEESCGGGCC-CSSCEEEEEEC T ss_pred CCCEEEECCCCHH--HHHHHHHHHCCCCCEEEEEECCHHHH--------HHHHHHHHHHCCCCCCC-CCCCCCEEEEC T ss_conf 9699996877646--99999998677678699997989999--------99997427737733368-54577778725 No 222 >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Probab=67.15 E-value=6.9 Score=18.91 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=53.2 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCC-CCCCCCEEEEEHHHHHHHHHHHHHHHHH--CC---CCEEEECHHH-HHHHCC- Q ss_conf 01234431111146773356565227-5546634787500003899999999973--89---8099804266-533124- Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQL-SSIEGGLVNLIESKNKKASFLRYVVQKT--AA---RGKVFACRIQ-EAPQMI- 139 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~~~~v~Lves~~KK~~FL~~~~~~L--~L---~~~vi~~r~e-~~~~~~- 139 (168) ..+++++++=||.|+| |++-.+.. +.. .++++||-.+.-+...++.-... .+ +++++.+.+- -+.+.. T Consensus 117 ~h~~PkrVLIIGgGdG--~~~revlk~~~v--~~v~~VEID~~Vi~~a~~~fp~~~~~~~dprv~iii~Dg~~~l~~~~~ 192 (334) T 1xj5_A 117 SIPNPKKVLVIGGGDG--GVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE 192 (334) T ss_dssp TSSCCCEEEEETCSSS--HHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHCCCC--CCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCC T ss_conf 1999886999889948--999999974996--533575058999999997534430235799879998627999751533 Q ss_pred CCCCEEEECCCCCH Q ss_conf 79869999147998 Q gi|254780807|r 140 TTCDVISARALADL 153 (168) Q Consensus 140 ~~~d~v~sRA~a~l 153 (168) .+||+|+.=++.|. T Consensus 193 ~~yDvIIvD~~dp~ 206 (334) T 1xj5_A 193 GSYDAVIVDSSDPI 206 (334) T ss_dssp TCEEEEEECCCCTT T ss_pred CCCCEEEEECCCCC T ss_conf 56677999789988 No 223 >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* Probab=63.93 E-value=8 Score=18.54 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=36.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHHHH Q ss_conf 234431111146773356565227554663478750000389999999997389-809980426653 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQEA 135 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e~~ 135 (168) ..+..|++||.|-|. +--+++... ...|+.+|...+=+.+|+ ...- +.+++++.+-.+ T Consensus 30 ~~~d~VlEIGpG~G~--LT~~Ll~~~--~~~v~aiE~D~~l~~~l~----~~~~~~~~ii~~D~l~~ 88 (249) T 3ftd_A 30 EEGNTVVEVGGGTGN--LTKVLLQHP--LKKLYVIELDREMVENLK----SIGDERLEVINEDASKF 88 (249) T ss_dssp CTTCEEEEEESCHHH--HHHHHTTSC--CSEEEEECCCHHHHHHHT----TSCCTTEEEECSCTTTC T ss_pred CCCCEEEEECCCCCH--HHHHHHHHC--CCEEEEEEECCCCHHHHH----HHCCCCEEEEECCHHHC T ss_conf 998949996998769--899999704--570789998662001322----22044328996340117 No 224 >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A Probab=59.54 E-value=4.3 Score=20.08 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=39.7 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-C-C-EE-EECHH-HHHHHCCCCCCEE Q ss_conf 34431111146773356565227554663478750000389999999997389-8-0-99-80426-6533124798699 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-R-G-KV-FACRI-QEAPQMITTCDVI 145 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~-~-~v-i~~r~-e~~~~~~~~~d~v 145 (168) +..+|+|+|||.-. =+|+.+=|+.. |+++|++. .++.++. + + +. +...- -..-..-..+|.+ T Consensus 827 ~~~~~lDlGTGPE~--RiLSLiP~d~p---vtm~D~RP--------~ae~~~~w~~~~T~f~~~Dyl~~~~~n~~~~D~v 893 (1299) T 3iyl_W 827 NLAHLLDLGTGPEC--RILSLIPPTLQ---VTMSDSRP--------CAELMASFDPALTAYVQGDYSTAAFWNGIRCDSA 893 (1299) T ss_dssp GGCSEEEETCCSSC--SGGGSSCTTSC---EEEEESSC--------CSSCGGGBCTTTEEEEESCSSSGGGGSSCCCSEE T ss_pred CHHEEEECCCCCCC--EEEEECCCCCC---EEEECCCC--------CHHHHCCCCCCCCEEEEECCCCCCEEECCCCCEE T ss_conf 60003661689751--25531599995---47860566--------4123214564334057713213305506787579 Q ss_pred EE Q ss_conf 99 Q gi|254780807|r 146 SA 147 (168) Q Consensus 146 ~s 147 (168) +| T Consensus 894 t~ 895 (1299) T 3iyl_W 894 TA 895 (1299) T ss_dssp EE T ss_pred EE T ss_conf 99 No 225 >3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Probab=57.40 E-value=10 Score=17.93 Aligned_cols=64 Identities=16% Similarity=0.299 Sum_probs=35.8 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-------CHHHHHHHHHHHHHHHHHCCCC---CCCCEEECCCCCHH Q ss_conf 6417999899999999999999846321304308-------9999989864635643100123---44311111467733 Q gi|254780807|r 16 LNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSS-------TVEDFWIRHVEDSLRVFQLHPY---PSIWIDLGSGGGFP 85 (168) Q Consensus 16 ~~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~-------~~~~~~~rHi~DSl~~~~~~~~---~~~ilDiGSGaGfP 85 (168) ...|+++.++...+. ++....| .+++|.- ...+.|.+.+..+..++..... .-.++||| |||| T Consensus 167 ~sKFGi~~~~~~~~~---~~~k~~~--l~l~Glh~H~GS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~idiG--GGf~ 239 (448) T 3btn_A 167 NMKFGTTLKNCRHLL---ECAKELD--VQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIG--GGFT 239 (448) T ss_dssp -CCCCBCHHHHHHHH---HHHHHHT--CEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECC--SCCC T ss_pred CCCCCCCHHHHHHHH---HHHHCCC--CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC--CCCC T ss_conf 666687778999887---7762288--17856455413654654879999999999999999829953676215--7666 Q ss_pred H Q ss_conf 5 Q gi|254780807|r 86 G 86 (168) Q Consensus 86 G 86 (168) + T Consensus 240 ~ 240 (448) T 3btn_A 240 G 240 (448) T ss_dssp S T ss_pred C T ss_conf 5 No 226 >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Probab=56.72 E-value=11 Score=17.80 Aligned_cols=52 Identities=15% Similarity=0.002 Sum_probs=36.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC Q ss_conf 34431111146773356565227554663478750000389999999997389 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA 123 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L 123 (168) ++..++|+|+--|.=...++-..+. ...+|+.+|++++=..-|++-++.... T Consensus 226 ~nevfIDVGAniG~~s~~f~~~~~~-~~~kV~AFEPnp~n~~~L~~Ni~~n~~ 277 (409) T 2py6_A 226 DSEKMVDCGASIGESLAGLIGVTKG-KFERVWMIEPDRINLQTLQNVLRRYTD 277 (409) T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTS-CCSEEEEECCCHHHHHHHHHHHHHTTT T ss_pred CCCEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 9988999885888889999996689-999899994878999999999986422 No 227 >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Probab=55.66 E-value=11 Score=17.69 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=44.8 Q ss_pred CCCEEECCCC-CHHHHHHHHC--CCCCCCCEEEEEHHHH--HHHHHH----HHHHHHHCCCCEEEE--CHHHHHHHCCCC Q ss_conf 4311111467-7335656522--7554663478750000--389999----999997389809980--426653312479 Q gi|254780807|r 73 SIWIDLGSGG-GFPGIITSIQ--LSSIEGGLVNLIESKN--KKASFL----RYVVQKTAARGKVFA--CRIQEAPQMITT 141 (168) Q Consensus 73 ~~ilDiGSGa-GfPGi~laI~--~p~~~~~~v~Lves~~--KK~~FL----~~~~~~L~L~~~vi~--~r~e~~~~~~~~ 141 (168) -+|.=||.|+ ++|++..+.+ .+.+....+.|+|-.+ .|...+ +++....+.+..+.. .|.|.+. . T Consensus 8 ~KI~iIGaGS~~~~~~~~~~~~~~~~l~~~ei~L~Di~~~~~rl~~~~~~~~~~~~~~~~~~~v~~~tD~~~Al~----~ 83 (450) T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALD----G 83 (450) T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT----T T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC----C T ss_conf 869999987567899999999733116899899986998888899999999999986199829999689899848----9 Q ss_pred CCEEEECCCC Q ss_conf 8699991479 Q gi|254780807|r 142 CDVISARALA 151 (168) Q Consensus 142 ~d~v~sRA~a 151 (168) .|+|+.-|-. T Consensus 84 ad~Vv~t~~v 93 (450) T 1s6y_A 84 ADFVTTQFRV 93 (450) T ss_dssp CSEEEECCCT T ss_pred CCEEEECCCC T ss_conf 9999989675 No 228 >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U Probab=54.02 E-value=7.6 Score=18.66 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=39.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-E-EEECHHH-HHHHCCCCCCEEE Q ss_conf 34431111146773356565227554663478750000389999999997389-80-9-9804266-5331247986999 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-K-VFACRIQ-EAPQMITTCDVIS 146 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~-vi~~r~e-~~~~~~~~~d~v~ 146 (168) ..+.|+|+|||.-. =+|+.+=|+.. |+++|++. .++.++. +. + .+...-- ..--.-..+|.++ T Consensus 821 ~~~~~lDlGTGPEa--RiLsLiP~~~p---vtm~D~RP--------~ae~~~~w~~~T~f~~~DyL~~~~~~~~~~D~vt 887 (1289) T 1ej6_A 821 DGDVVLDLGTGPEA--KILELIPATSP---VTCVDIRP--------TAQPSGCWNVRTTFLELDYLSDGWITGVRGDIVT 887 (1289) T ss_dssp TTCCEEEESCCSSC--GGGGTSCTTSC---EEEEESSC--------CCSCSTTBSSCEEEEESCTTSSSCGGGCCCSEEE T ss_pred CCCEEEEECCCCCC--EEEEECCCCCC---EEEEECCC--------CHHHHCCCCCCCEEEEECCCCCCEEECCCCCEEE T ss_conf 46679980689751--35642489995---47860566--------4112034465650578122133155057875799 Q ss_pred E Q ss_conf 9 Q gi|254780807|r 147 A 147 (168) Q Consensus 147 s 147 (168) | T Consensus 888 c 888 (1289) T 1ej6_A 888 C 888 (1289) T ss_dssp E T ss_pred E T ss_conf 8 No 229 >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Probab=50.29 E-value=4.5 Score=19.99 Aligned_cols=41 Identities=5% Similarity=0.096 Sum_probs=17.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC------EEEECCHHHHHHHHHHH Q ss_conf 998999999999999998463213------04308999998986463 Q gi|254780807|r 21 VSRETLEKLEYFYFLFLKWSKKIN------LVSSSTVEDFWIRHVED 61 (168) Q Consensus 21 ls~eq~~~l~~y~~ll~~~N~~~N------Lts~~~~~~~~~rHi~D 61 (168) .+......+..+...+.++..... -....+..++..++..+ T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 180 (433) T 1d5t_A 134 MGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLG 180 (433) T ss_dssp SCHHHHHHHHHHHHHHHHCCTTCGGGGTTCCTTTSBHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC T ss_conf 33345666778999999876520222222111336699999862146 No 230 >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Probab=49.47 E-value=4.8 Score=19.80 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=10.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCC Q ss_conf 998999999999999998463 Q gi|254780807|r 21 VSRETLEKLEYFYFLFLKWSK 41 (168) Q Consensus 21 ls~eq~~~l~~y~~ll~~~N~ 41 (168) ++......+..|......++. T Consensus 142 l~~~~k~~l~k~l~~~~~~~~ 162 (453) T 2bcg_G 142 MGIFEKRRMKKFLEWISSYKE 162 (453) T ss_dssp SCHHHHHHHHHHHHHHHHCBT T ss_pred CCHHHHHHHHHHHHHHHHHHH T ss_conf 235678889999877544201 No 231 >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* Probab=45.51 E-value=7.2 Score=18.79 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=18.1 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHC Q ss_conf 479869999147998999998488520 Q gi|254780807|r 139 ITTCDVISARALADLDTLLEYSFPWLY 165 (168) Q Consensus 139 ~~~~d~v~sRA~a~l~~ll~~~~pllk 165 (168) ...||.|++- +|++.+.+++.+-|. T Consensus 224 ~~~~d~vI~T--~pld~l~~~~~~~L~ 248 (384) T 2bi7_A 224 RTHYDHVFYS--GPLDAFYGYQYGRLG 248 (384) T ss_dssp GGGSSEEEEC--SCHHHHTTTTTCCCC T ss_pred HHCCCEEEEE--CCHHHHHHHHCCCCC T ss_conf 2036659993--583999975435676 No 232 >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Probab=43.57 E-value=18 Score=16.57 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=16.3 Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 7986999914799899999848852067 Q gi|254780807|r 140 TTCDVISARALADLDTLLEYSFPWLYQK 167 (168) Q Consensus 140 ~~~d~v~sRA~a~l~~ll~~~~pllk~k 167 (168) ..+|-+.++-| ..+.|.+.-..++..+ T Consensus 104 ~G~~~~l~KP~-~~~~L~~~l~~~l~~r 130 (136) T 1dcf_A 104 FGLDGVLLKPV-SLDNIRDVLSDLLEPR 130 (136) T ss_dssp TTCCEEEESSC-CHHHHHHHHHHHHSCC T ss_pred CCCCEEEECCC-CHHHHHHHHHHHHCCH T ss_conf 69998998989-9999999999996003 No 233 >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Probab=42.33 E-value=7.3 Score=18.77 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=38.9 Q ss_pred HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC-CEEEECHHHH---------H Q ss_conf 10012344311111467733565652275546634787500003899999999973898-0998042665---------3 Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR-GKVFACRIQE---------A 135 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~-~~vi~~r~e~---------~ 135 (168) +.+++++.+++|+|++.| |-.-.+... ...+..+|-..-. ..+ +..+.+.+-+ . T Consensus 20 f~l~k~~~~vlDLg~aPG--gw~q~~~~~---~~~v~~vd~~~~~-----------~~~~v~~~~gD~~~~~~~~~~~~~ 83 (191) T 3dou_A 20 YRVVRKGDAVIEIGSSPG--GWTQVLNSL---ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRA 83 (191) T ss_dssp HCCSCTTCEEEEESCTTC--HHHHHHTTT---CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHH T ss_pred HCCCCCCCEEEEEEECCC--CCEEEEEEC---CCCEEEEECCCCC-----------CCCCEEEECCCCCCHHHHHHHHHH T ss_conf 487679987998410298--064876612---6622655045565-----------667817852555425688988887 Q ss_pred --HHCCCCCCEEEECCCCCH Q ss_conf --312479869999147998 Q gi|254780807|r 136 --PQMITTCDVISARALADL 153 (168) Q Consensus 136 --~~~~~~~d~v~sRA~a~l 153 (168) .....++|+|+|=+-.+. T Consensus 84 ~~~~~~~~~DlVlSD~ap~~ 103 (191) T 3dou_A 84 LREEGIEKVDDVVSDAMAKV 103 (191) T ss_dssp HHHHTCSSEEEEEECCCCCC T ss_pred HHHCCCCCCCEEECCCCCCC T ss_conf 76504786688980464467 No 234 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=41.74 E-value=19 Score=16.40 Aligned_cols=134 Identities=7% Similarity=-0.026 Sum_probs=56.4 Q ss_pred CCCCHH-HHHHHHHHHHHHHHHCCCCCEEEE----------CCHHHHHH----HHHHHHHHHHH----CC--CCCCCCEE Q ss_conf 799989-999999999999984632130430----------89999989----86463564310----01--23443111 Q gi|254780807|r 19 YNVSRE-TLEKLEYFYFLFLKWSKKINLVSS----------STVEDFWI----RHVEDSLRVFQ----LH--PYPSIWID 77 (168) Q Consensus 19 ~~ls~e-q~~~l~~y~~ll~~~N~~~NLts~----------~~~~~~~~----rHi~DSl~~~~----~~--~~~~~ilD 77 (168) .+++++ +++. +.+.+.++.....|+.- ....+.|. -.+.-...+.+ .. ....+++- T Consensus 63 ~Dvs~~~~v~~---~~~~i~~~~~~d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~g~Ii~ 139 (252) T 3h7a_A 63 LDARNEDEVTA---FLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFF 139 (252) T ss_dssp CCTTCHHHHHH---HHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE T ss_pred CCCCCHHHHHH---HHHHHHHCCCEEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 77689999998---887776427501230143215777755599999999999875678899999999998769988999 Q ss_pred ECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC---CC-EEEE-CHHHH-----H-HHCCCCCCEEE Q ss_conf 1146773356565227554663478750000389999999997389---80-9980-42665-----3-31247986999 Q gi|254780807|r 78 LGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA---RG-KVFA-CRIQE-----A-PQMITTCDVIS 146 (168) Q Consensus 78 iGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L---~~-~vi~-~r~e~-----~-~~~~~~~d~v~ 146 (168) ++|.+|+-|.|-...| .=++.==..|.+....++.- .+ .++. +-+.. . .+......... T Consensus 140 isS~~~~~~~~~~~~Y----------~asKaal~~lt~~la~e~~~~gi~V~~~~~pg~v~t~~~~~~~~~~~~~~~~~~ 209 (252) T 3h7a_A 140 TGATASLRGGSGFAAF----------ASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALAN 209 (252) T ss_dssp EEEGGGTCCCTTCHHH----------HHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------- T ss_pred ECCHHHCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 7874425789995779----------999999999999999986065887999958987387555540466656641268 Q ss_pred ECCCCCHHHHHHHHHHHHC Q ss_conf 9147998999998488520 Q gi|254780807|r 147 ARALADLDTLLEYSFPWLY 165 (168) Q Consensus 147 sRA~a~l~~ll~~~~pllk 165 (168) ...+++++.+.+...-++. T Consensus 210 ~~~~~~PedIA~~v~fl~s 228 (252) T 3h7a_A 210 PDLLMPPAAVAGAYWQLYQ 228 (252) T ss_dssp ----CCHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHC T ss_conf 7778199999999999978 No 235 >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Probab=39.44 E-value=7.7 Score=18.62 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=12.0 Q ss_pred CCCCCCEEEECCCCCHHHHHHHH Q ss_conf 24798699991479989999984 Q gi|254780807|r 138 MITTCDVISARALADLDTLLEYS 160 (168) Q Consensus 138 ~~~~~d~v~sRA~a~l~~ll~~~ 160 (168) ....+|.+++= +|++.+.... T Consensus 234 ~~~~~d~ii~t--~p~~~~~~~~ 254 (399) T 1v0j_A 234 PGSPAAPVVYT--GPLDRYFDYA 254 (399) T ss_dssp TTSTTCCEEEC--SCHHHHTTTT T ss_pred CCCCCCEEECC--CCHHHHHHHH T ss_conf 55554138756--8718988631 No 236 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Probab=39.22 E-value=21 Score=16.17 Aligned_cols=76 Identities=11% Similarity=-0.011 Sum_probs=37.3 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCC--CCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CC-EEEECHHHH--H-HHCCCC Q ss_conf 234431111146773356565227--554663478750000389999999997389--80-998042665--3-312479 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQL--SSIEGGLVNLIESKNKKASFLRYVVQKTAA--RG-KVFACRIQE--A-PQMITT 141 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~--p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~-~vi~~r~e~--~-~~~~~~ 141 (168) +.+.+|+|--+|.| |+.++... .+.....++-.|.+..-...-+.-..-.+. .+ .+.++..-. . .....+ T Consensus 220 ~~~~~I~DPacGsG--gfL~~a~~~~~~~~~~~~~G~e~~~~~~~la~~nl~l~g~~~~~~~i~~~d~l~~~~~~~~~~~ 297 (542) T 3lkd_A 220 KQGFTLYDATMGSG--SLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTN 297 (542) T ss_dssp CTTCEEEETTCTTS--TTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCC T ss_pred CCCCEEECCCCCCC--HHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC T ss_conf 78986832778845--5889888877500555787442667999999998787246542220320565444443232320 Q ss_pred CCEEEE Q ss_conf 869999 Q gi|254780807|r 142 CDVISA 147 (168) Q Consensus 142 ~d~v~s 147 (168) ||+|++ T Consensus 298 fD~Il~ 303 (542) T 3lkd_A 298 FDGVLM 303 (542) T ss_dssp BSEEEE T ss_pred EEEEEE T ss_conf 003563 No 237 >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Probab=38.68 E-value=11 Score=17.76 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=31.7 Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHH--------HHHHHHHHHHHHCC Q ss_conf 44311111467733565652275546634787500003--------89999999997389 Q gi|254780807|r 72 PSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNK--------KASFLRYVVQKTAA 123 (168) Q Consensus 72 ~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~K--------K~~FL~~~~~~L~L 123 (168) +++++=| |||+-|+=+|.++..+. ..||++|+... -...+.+..++.+. T Consensus 180 pk~vvVv--GgG~ig~E~A~~l~~~G-~~Vtlie~~~~ll~~~d~e~~~~l~~~l~~~GV 236 (476) T 3lad_A 180 PGKLGVI--GAGVIGLELGSVWARLG-AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGL 236 (476) T ss_dssp CSEEEEE--CCSHHHHHHHHHHHHTT-CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTE T ss_pred CCCEEEE--CCCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 9814997--88799999999999659-979999868855776677889999998875394 No 238 >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* Probab=38.19 E-value=9 Score=18.25 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=21.9 Q ss_pred CCEE-EECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 8099-8042665331247986999914799899999848852 Q gi|254780807|r 124 RGKV-FACRIQEAPQMITTCDVISARALADLDTLLEYSFPWL 164 (168) Q Consensus 124 ~~~v-i~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pll 164 (168) ...| .+..+.+... ..++|.|++= +|++.+++++.+=| T Consensus 234 ~i~V~lNtd~~~i~~-~~~~d~vIsT--~Pld~l~~~~~~~L 272 (397) T 3hdq_A 234 NIKVMLNTDYREIAD-FIPFQHMIYT--GPVDAFFDFCYGKL 272 (397) T ss_dssp TEEEEESCCGGGTTT-TSCEEEEEEC--SCHHHHTTTTTCCC T ss_pred CCEEEECCEEHHHHH-HCCCCEEEEC--CCHHHHHHHHCCCC T ss_conf 823674220021110-0245604762--88899997524677 No 239 >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Probab=38.13 E-value=11 Score=17.65 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=13.6 Q ss_pred HHHCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 984632130430899999898646356 Q gi|254780807|r 37 LKWSKKINLVSSSTVEDFWIRHVEDSL 63 (168) Q Consensus 37 ~~~N~~~NLts~~~~~~~~~rHi~DSl 63 (168) ....+...-....+.++.+.+.+-+.+ T Consensus 117 ~~~~~~~~~~~~~~~~e~~~~~~G~~l 143 (367) T 1i8t_A 117 NAQKKKYGDKVPENLEEQAISLVGEDL 143 (367) T ss_dssp HHHTTTTCCCCCCSHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHCCCCHH T ss_conf 998765067786347777541036322 No 240 >3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A* Probab=36.37 E-value=23 Score=15.90 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=52.5 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHH----HHCC-CCEEEECHHHH-HHHC-C Q ss_conf 0123443111114677335656522-755466347875000038999999999----7389-80998042665-3312-4 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQ-LSSIEGGLVNLIESKNKKASFLRYVVQ----KTAA-RGKVFACRIQE-APQM-I 139 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~-~p~~~~~~v~Lves~~KK~~FL~~~~~----~L~L-~~~vi~~r~e~-~~~~-~ 139 (168) ..+++++++=||.|+|. ++-.+. +|.. .++++||-.+.-++..+.--. .+.= +++++.+.+-+ +.+. . T Consensus 92 ~h~~pk~VLIiGgGdG~--~~rellk~~~v--~~v~~VEID~~Vi~~~~~~~p~~~~~~~dprv~iii~D~~~~l~~~~~ 167 (304) T 3bwc_A 92 SHPKPERVLIIGGGDGG--VLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPD 167 (304) T ss_dssp TSSSCCEEEEEECTTSH--HHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCT T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHCCCC--CEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEECHHHHHHHHCCC T ss_conf 39997869998389379--99999965994--279998058899999998654430111498648998669999974634 Q ss_pred CCCCEEEECCCCCHH Q ss_conf 798699991479989 Q gi|254780807|r 140 TTCDVISARALADLD 154 (168) Q Consensus 140 ~~~d~v~sRA~a~l~ 154 (168) .+||+|+.=+..|.. T Consensus 168 ~~yDvIi~D~~dp~~ 182 (304) T 3bwc_A 168 NTYDVVIIDTTDPAG 182 (304) T ss_dssp TCEEEEEEECC---- T ss_pred CCCCEEEEECCCCCC T ss_conf 687689990899887 No 241 >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Probab=33.28 E-value=12 Score=17.44 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=40.2 Q ss_pred HHCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHH-------- Q ss_conf 100123443111114677-335656522755466347875000038999999999738980-9980426653-------- Q gi|254780807|r 66 FQLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEA-------- 135 (168) Q Consensus 66 ~~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~-------- 135 (168) +.+++.+.+++|+|++.| +-=.......+. ..+..+|-...+ .+++ ..+.+.+.+. T Consensus 17 ~~l~~~~~~vlDLg~aPGgw~q~~~~~~~~~---~~v~~vd~~~~~-----------~i~~~~~~~gd~~~~~~~~~~~~ 82 (180) T 1ej0_A 17 DKLFKPGMTVVDLGAAPGGWSQYVVTQIGGK---GRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLE 82 (180) T ss_dssp HCCCCTTCEEEEESCTTCHHHHHHHHHHCTT---CEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHH T ss_pred HCCCCCCCEEEEEECCCCCCEEEEEEECCCC---CEEEEEECCCCC-----------CCCCCEEECCCCHHHHHHHHHHH T ss_conf 4866789869997325896428988752898---408997456465-----------56896785155002345665543 Q ss_pred HHCCCCCCEEEECCCC Q ss_conf 3124798699991479 Q gi|254780807|r 136 PQMITTCDVISARALA 151 (168) Q Consensus 136 ~~~~~~~d~v~sRA~a 151 (168) .....++|+|+|=+-. T Consensus 83 ~~~~~~~DlVlSD~ap 98 (180) T 1ej0_A 83 RVGDSKVQVVMSDMAP 98 (180) T ss_dssp HHTTCCEEEEEECCCC T ss_pred HCCCCCCCEEECCCCC T ss_conf 2246542488523577 No 242 >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Probab=32.74 E-value=13 Score=17.31 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=13.2 Q ss_pred HCCCCCCCCEEECCCCC Q ss_conf 00123443111114677 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGG 83 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaG 83 (168) .+++.+.+++|+|++.| T Consensus 18 ~l~~~~~~vlDLg~aPG 34 (196) T 2nyu_A 18 QILRPGLRVLDCGAAPG 34 (196) T ss_dssp CCCCTTCEEEEETCCSC T ss_pred CCCCCCCEEEEECCCCC T ss_conf 86579987999657897 No 243 >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A* Probab=31.59 E-value=13 Score=17.32 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=39.8 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHH----HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCC Q ss_conf 012344311111467733565652275546634787500----0038999999999738980998042665331247986 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIES----KNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCD 143 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves----~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d 143 (168) +++...+++|+|+|.|==.-..| ..+.. ..|..++- ..+.. ....++-+.........-......++| T Consensus 79 ~ikp~g~VVDLGcAPGGWSQvaa-~~~~v--~~V~G~~iG~dl~e~P~-----~~~~~g~niv~~~~~~dv~~l~~~~~D 150 (305) T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCG-GLKNV--REVKGLTKGGPGHEEPI-----PMSTYGWNLVRLQSGVDVFFIPPERCD 150 (305) T ss_dssp SSCCCEEEEEETCTTSHHHHHHH-TSTTE--EEEEEECCCSTTSCCCC-----CCCSTTGGGEEEECSCCTTTSCCCCCS T ss_pred CCCCCCEEEECCCCCCCHHHHHH-HHCCC--CCEEEEEECCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHCCCCCCC T ss_conf 75769868873768983899998-62266--62168994465565873-----441036553013444467753788788 Q ss_pred EEEECCCC----------CHHHHHHHHHHHHCC Q ss_conf 99991479----------989999984885206 Q gi|254780807|r 144 VISARALA----------DLDTLLEYSFPWLYQ 166 (168) Q Consensus 144 ~v~sRA~a----------~l~~ll~~~~pllk~ 166 (168) +|+|-..- -.-.+++++.++|++ T Consensus 151 ~VlcDm~esS~~~~vd~~Rtl~VLelae~wL~p 183 (305) T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN 183 (305) T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 898448777899654543239999999998345 No 244 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Probab=31.25 E-value=20 Score=16.23 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=51.8 Q ss_pred HHHHCCCCCCCCEEECCCCC-HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC--CCEEEE-CHHHHH--HH Q ss_conf 43100123443111114677-3356565227554663478750000389999999997389--809980-426653--31 Q gi|254780807|r 64 RVFQLHPYPSIWIDLGSGGG-FPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA--RGKVFA-CRIQEA--PQ 137 (168) Q Consensus 64 ~~~~~~~~~~~ilDiGSGaG-fPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L--~~~vi~-~r~e~~--~~ 137 (168) .-+.+...+..++|+|+..| |--..|. ....+|+.||--..- | ..+|.- .+.+.. .++-++ .. T Consensus 30 ~~f~i~~~gk~~lDiGaStGGFTd~lLq-----~GA~~V~aVDVG~~q---L---~~~lr~d~rV~~~E~~n~R~~~~~~ 98 (232) T 3opn_A 30 KEFHLEINGKTCLDIGSSTGGFTDVMLQ-----NGAKLVYALDVGTNQ---L---AWKIRSDERVVVMEQFNFRNAVLAD 98 (232) T ss_dssp HHTTCCCTTCEEEEETCTTSHHHHHHHH-----TTCSEEEEECSSCCC---C---CHHHHTCTTEEEECSCCGGGCCGGG T ss_pred HHCCCCCCCCEEEECCCCCCHHHHHHHH-----CCCCEEEEEECCCHH---H---HHHHHCCCCCCCHHHHCCCCCCHHH T ss_conf 9779986899899858898589999998-----098789999437034---3---0777439870320210144553333 Q ss_pred C-CCCCCEEEE-CCCCCHHHHHHHHHHHHCCC Q ss_conf 2-479869999-14799899999848852067 Q gi|254780807|r 138 M-ITTCDVISA-RALADLDTLLEYSFPWLYQK 167 (168) Q Consensus 138 ~-~~~~d~v~s-RA~a~l~~ll~~~~pllk~k 167 (168) . .+++|++++ =.|-++..++.-..+++++. T Consensus 99 ~~~~~~Dlvv~DvSFISl~~vlp~~~~~l~~~ 130 (232) T 3opn_A 99 FEQGRPSFTSIDVSFISLDLILPPLYEILEKN 130 (232) T ss_dssp CCSCCCSEEEECCSSSCGGGTHHHHHHHSCTT T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 04688878997065176999999999982689 No 245 >2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Probab=29.79 E-value=30 Score=15.26 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=31.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-------CCHHHHHHHHHHHHHHHHHCCC---CCCCCEEECCCCCHHH Q ss_conf 41799989999999999999984632130430-------8999998986463564310012---3443111114677335 Q gi|254780807|r 17 NTYNVSRETLEKLEYFYFLFLKWSKKINLVSS-------STVEDFWIRHVEDSLRVFQLHP---YPSIWIDLGSGGGFPG 86 (168) Q Consensus 17 ~~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~-------~~~~~~~~rHi~DSl~~~~~~~---~~~~ilDiGSGaGfPG 86 (168) ..++.+.++...+... ... ..++++|. ....+.|.+.+-.+..++.... ..-.++|+| ||||+ T Consensus 178 ~kFG~~~~~~~~~~~~---~~~--~~l~~~GlH~HiGS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiG--GGf~~ 250 (471) T 2oo0_A 178 VKFGATLRTSRLLLER---AKE--LNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIG--GGFPG 250 (471) T ss_dssp TTSCBCHHHHHHHHHH---HHH--TTCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECC--CCCCS T ss_pred CCCCCCHHHHHHHHHH---HHH--CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCC T ss_conf 6766448999999998---875--5951899999758876772889999998778898887608653332247--77565 No 246 >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Probab=28.53 E-value=16 Score=16.85 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=38.8 Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCC-CCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHH-HCCCCCCEE Q ss_conf 012344311111467733565652275546-634787500003899999999973898099804266533-124798699 Q gi|254780807|r 68 LHPYPSIWIDLGSGGGFPGIITSIQLSSIE-GGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAP-QMITTCDVI 145 (168) Q Consensus 68 ~~~~~~~ilDiGSGaGfPGi~laI~~p~~~-~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~-~~~~~~d~v 145 (168) ++..+.+|+|+|+|.|==.-..+=..+-.. ...+..+|-...-.. ...++-+....... +++. -...++|+| T Consensus 71 ~lkp~~~VVDLGaAPGGWSQvaa~~~~v~~~~G~vigvDl~~~P~~-----~~t~~~di~~~~~~-~~v~~l~~~~~DlV 144 (277) T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-----VQSLGWNIITFKDK-TDIHRLEPVKCDTL 144 (277) T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-----CCBTTGGGEEEECS-CCTTTSCCCCCSEE T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCC-----CCEECCCCCCHHHH-HHHHHCCCCCCCEE T ss_conf 8577987999267886899999985554677139994128768877-----74525565766689-99986478766878 Q ss_pred EECCCCC-----------HHHHHHHHHHHHCC Q ss_conf 9914799-----------89999984885206 Q gi|254780807|r 146 SARALAD-----------LDTLLEYSFPWLYQ 166 (168) Q Consensus 146 ~sRA~a~-----------l~~ll~~~~pllk~ 166 (168) +|-. +. ....++++..+|++ T Consensus 145 lsDm-G~~~~d~~~~~~l~~~aL~la~~~L~~ 175 (277) T 3evf_A 145 LCDI-GESSSSSVTEGERTVRVLDTVEKWLAC 175 (277) T ss_dssp EECC-CCCCSCHHHHHHHHHHHHHHHHHHHTT T ss_pred ECCC-CCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 7268-653202467778999999999998476 No 247 >2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens} Probab=27.85 E-value=13 Score=17.36 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=8.6 Q ss_pred CEEECCCCCH Q ss_conf 1111146773 Q gi|254780807|r 75 WIDLGSGGGF 84 (168) Q Consensus 75 ilDiGSGaGf 84 (168) +.|+|||.|+ T Consensus 2 ~~d~gs~tgy 11 (38) T 2kyg_C 2 MADIGSASGY 11 (38) T ss_dssp CSCCSCCCSS T ss_pred CCCCCCCCCC T ss_conf 1102476777 No 248 >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 Probab=27.80 E-value=32 Score=15.05 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=36.9 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCC------------CCCEEEEEHHHHHHHHHHHHHHHHHCCC---CEEEECHHHHH Q ss_conf 34431111146773356565227554------------6634787500003899999999973898---09980426653 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSI------------EGGLVNLIESKNKKASFLRYVVQKTAAR---GKVFACRIQEA 135 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~------------~~~~v~Lves~~KK~~FL~~~~~~L~L~---~~vi~~r~e~~ 135 (168) .+.+|+|-.+|.| |+.++++.--. ....++.+|....-+..-+.-..-.+.. ..+.+...-+. T Consensus 171 ~~~~IlDPacGsG--~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~~~~~~~la~~nl~l~~~~~~~~~i~~~d~~~~ 248 (445) T 2okc_A 171 MGETVCDPACGTG--GFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445) T ss_dssp TTCCEEETTCTTC--HHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS T ss_pred CCCEEECCCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHCEECEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH T ss_conf 9997812788976--65999999998731227777553010142341209999999962310277643201221530320 Q ss_pred HHCCCCCCEEEE Q ss_conf 312479869999 Q gi|254780807|r 136 PQMITTCDVISA 147 (168) Q Consensus 136 ~~~~~~~d~v~s 147 (168) ....+||+|++ T Consensus 249 -~~~~~fD~Ii~ 259 (445) T 2okc_A 249 -EPSTLVDVILA 259 (445) T ss_dssp -CCSSCEEEEEE T ss_pred -CCCCCCCEEEC T ss_conf -24346872245 No 249 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=27.64 E-value=32 Score=15.04 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=39.8 Q ss_pred CCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE-CHHHHHHHCCCCCCEEEECC Q ss_conf 431111146773356565227554663478750000389999999997389809980-42665331247986999914 Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFA-CRIQEAPQMITTCDVISARA 149 (168) Q Consensus 73 ~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~-~r~e~~~~~~~~~d~v~sRA 149 (168) .+|+=+|+ |.=|=.++=..-......|+++|++..+...+. ..+......+ ...+.+.....++|+|++=. T Consensus 6 ~kI~ViGa--G~vG~~va~~L~~~~~~~v~~~dr~~~~~~~~~----~~~~~~~~~d~~d~~~l~~~l~~~DvVi~~~ 77 (118) T 3ic5_A 6 WNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118) T ss_dssp EEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TTTCEEEECCTTCHHHHHHHTTTCSEEEECS T ss_pred CCEEEECC--CHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCC----CCCCCCCCCCCCCHHHHHHHHCCCCEEEECC T ss_conf 78899867--999999999998789984786126566641000----1222211124489999999985998999837 No 250 >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Probab=27.57 E-value=32 Score=15.03 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=39.5 Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHH Q ss_conf 043089999989864635643100123443111114677335656522755466347875000038999999999 Q gi|254780807|r 45 LVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQ 119 (168) Q Consensus 45 Lts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~ 119 (168) +++.+|.-.- +..++.-......+.+++=+|+||.=-++..+... ...++++.+...|..-|..-.. T Consensus 105 ~~G~NTD~~G----~~~~l~~~~~~~~~~~vlilG~GGaa~a~~~al~~----~~~i~i~nR~~~ka~~l~~~~~ 171 (287) T 1nvt_A 105 AIGYNTDGIG----ARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAK----DNNIIIANRTVEKAEALAKEIA 171 (287) T ss_dssp EEEECCHHHH----HHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS----SSEEEEECSSHHHHHHHHHHHH T ss_pred EEEEECCCHH----HHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHH T ss_conf 8745410057----77777752256678759997624889999999960----8816998378999999999999 No 251 >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Probab=27.33 E-value=17 Score=16.65 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.9 Q ss_pred CCCCCEEECCCCC Q ss_conf 3443111114677 Q gi|254780807|r 71 YPSIWIDLGSGGG 83 (168) Q Consensus 71 ~~~~ilDiGSGaG 83 (168) ...+|+|+|+|.| T Consensus 81 p~g~VVDLG~aPG 93 (300) T 3eld_A 81 ITGRVLDLGCGRG 93 (300) T ss_dssp CCEEEEEETCTTC T ss_pred CCCEEEEECCCCC T ss_conf 5883898377896 No 252 >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis ma-4680} PDB: 3go4_A* Probab=26.92 E-value=18 Score=16.50 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=33.7 Q ss_pred CCCEEECCCCCHHHHHHHHC---CCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CCEEEECHHH Q ss_conf 43111114677335656522---7554663478750000389999999997389-8099804266 Q gi|254780807|r 73 SIWIDLGSGGGFPGIITSIQ---LSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RGKVFACRIQ 133 (168) Q Consensus 73 ~~ilDiGSGaGfPGi~laI~---~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~~vi~~r~e 133 (168) ..++|+|||-+-.|-+-.++ .|+. +|+.+|...--...-+.......- ..+++.+.+. T Consensus 80 rQfLDlGsGlPt~~n~heva~~~~P~a---rVvyvD~dp~vlaharalL~~~~~~~~~~v~aD~r 141 (277) T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML 141 (277) T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT T ss_pred CEEEEECCCCCCCCCHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCC T ss_conf 789994638898874999998748997---69999497889999999733798773899957666 No 253 >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Probab=26.17 E-value=34 Score=14.88 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=37.0 Q ss_pred CCCEEECCCC-CH-HHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH-CCCCEEE--ECHHHHHHHCCCCCCEEEE Q ss_conf 4311111467-73-3565652275546634787500003899999999973-8980998--0426653312479869999 Q gi|254780807|r 73 SIWIDLGSGG-GF-PGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKT-AARGKVF--ACRIQEAPQMITTCDVISA 147 (168) Q Consensus 73 ~~ilDiGSGa-Gf-PGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L-~L~~~vi--~~r~e~~~~~~~~~d~v~s 147 (168) -++.=||.|+ || |++.-.++..+.....+.|+|-...|..-......+. +....+. ..+-|.+. ..|+|+. T Consensus 6 mKI~iIGaGsvg~t~~l~~~l~~~~~~~~ei~L~Did~~~~~~~~~~~~~~~~~~~~i~~t~d~~eal~----~aD~Vv~ 81 (450) T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALS----AADIVII 81 (450) T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHT----TCSEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHC----CCCEEEE T ss_conf 779999978688899999999734466882999917776888899999861489961999778689848----9999998 Q ss_pred CC Q ss_conf 14 Q gi|254780807|r 148 RA 149 (168) Q Consensus 148 RA 149 (168) -| T Consensus 82 t~ 83 (450) T 3fef_A 82 SI 83 (450) T ss_dssp CC T ss_pred CE T ss_conf 74 No 254 >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Probab=24.99 E-value=20 Score=16.25 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=11.6 Q ss_pred CCCCCCCEEECCCCC Q ss_conf 123443111114677 Q gi|254780807|r 69 HPYPSIWIDLGSGGG 83 (168) Q Consensus 69 ~~~~~~ilDiGSGaG 83 (168) +.....|+|+|+|.| T Consensus 92 l~p~G~VVDLGcapG 106 (321) T 3lkz_A 92 LEPVGKVIDLGCGRG 106 (321) T ss_dssp CCCCEEEEEETCTTC T ss_pred CCCCCEEEECCCCCC T ss_conf 550886887476887 No 255 >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7} Probab=24.86 E-value=20 Score=16.23 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.2 Q ss_pred HCCCCCCCCEEECCCCC Q ss_conf 00123443111114677 Q gi|254780807|r 67 QLHPYPSIWIDLGSGGG 83 (168) Q Consensus 67 ~~~~~~~~ilDiGSGaG 83 (168) ++++.+..++|+|++.| T Consensus 18 ~l~~~~~~vvDLg~aPG 34 (201) T 2plw_A 18 LFLKKNKIILDIGCYPG 34 (201) T ss_dssp CCCCTTEEEEEESCTTC T ss_pred CCCCCCCEEEEECCCCC T ss_conf 82579987999478997 No 256 >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Probab=23.45 E-value=22 Score=15.98 Aligned_cols=92 Identities=14% Similarity=0.072 Sum_probs=42.7 Q ss_pred CCCCCCEEECCCCCHHHHHH-HHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC Q ss_conf 23443111114677335656-52275546634787500003899999999973898099804266533124798699991 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIIT-SIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR 148 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~l-aI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR 148 (168) ....+++|+|+|.| |--- +...+ ....|+.+|--.-.- .-........-+....+.+........++.|+|+|- T Consensus 81 ~~~g~VVDLGas~G--GwTqva~~~~--ga~~V~avDvG~~~~-~~p~~~~~~~~n~~~~~~~~dv~~~~~~~~D~vvcD 155 (276) T 2wa2_A 81 ELKGTVVDLGCGRG--SWSYYAASQP--NVREVKAYTLGTSGH-EKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCD 155 (276) T ss_dssp CCCEEEEEESCTTC--HHHHHHHTST--TEEEEEEECCCCTTS-CCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEEC T ss_pred CCCCEEEECCCCCC--CHHHHHHHHC--CCCEEEEEECCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 76884898077887--0999998764--885799998278765-575333200356121003332211289988889980 Q ss_pred C-CCCH---------HHHHHHHHHHHCC Q ss_conf 4-7998---------9999984885206 Q gi|254780807|r 149 A-LADL---------DTLLEYSFPWLYQ 166 (168) Q Consensus 149 A-~a~l---------~~ll~~~~pllk~ 166 (168) . +.+. -.+++++.|+++. T Consensus 156 is~~S~~~~v~~~r~l~Vl~l~~~~l~~ 183 (276) T 2wa2_A 156 IGESNPTAAVEASRTLTVLNVISRWLEY 183 (276) T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHCCCHHHHHHHHHHHHHH T ss_conf 5445786002003323299999999956 No 257 >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Probab=23.37 E-value=23 Score=15.84 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=7.8 Q ss_pred CCCEEEECCCCCHHHHHH Q ss_conf 986999914799899999 Q gi|254780807|r 141 TCDVISARALADLDTLLE 158 (168) Q Consensus 141 ~~d~v~sRA~a~l~~ll~ 158 (168) .+|.|++= .|+..+++ T Consensus 246 ~~d~vI~a--~p~~~~~~ 261 (424) T 2b9w_A 246 ESDVLVLT--VPLEKFLD 261 (424) T ss_dssp EESEEEEC--SCHHHHTT T ss_pred EECEEEEE--CCHHHHHH T ss_conf 92689990--78799975 No 258 >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Probab=23.09 E-value=23 Score=15.89 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=37.6 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHH----HHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCE Q ss_conf 123443111114677335656522755466347875000----0389999999997389809980426653312479869 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESK----NKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDV 144 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~----~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~ 144 (168) +....+++|+|+|.|==.-..+ ..+.. ..|..++-- .+-. .....+-+......+.+-..-...+.|+ T Consensus 72 ~~~~g~vvDlg~~~Ggws~~~~-~~~~v--~~V~G~tlG~dghe~P~-----~~~~~g~nii~~~~~~Dv~~~~~~~~Dt 143 (265) T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAA-SRPHV--MDVRAYTLGVGGHEVPR-----ITESYGWNIVKFKSRVDIHTLPVERTDV 143 (265) T ss_dssp CCCCEEEEEESCTTSHHHHHHH-TSTTE--EEEEEECCCCSSCCCCC-----CCCBTTGGGEEEECSCCTTTSCCCCCSE T ss_pred CCCCCEEEEECCCCCCHHHHHH-HHCCC--CEEEEEEECCCCCCCCC-----CCCCCCCCEEEEECCCCEEECCCCCCCE T ss_conf 6648828880678871899997-63376--54677894577666773-----2234786547444267327559986888 Q ss_pred EEECCCCC-----------HHHHHHHHHHHHC Q ss_conf 99914799-----------8999998488520 Q gi|254780807|r 145 ISARALAD-----------LDTLLEYSFPWLY 165 (168) Q Consensus 145 v~sRA~a~-----------l~~ll~~~~pllk 165 (168) |+|=. ++ .-.++++...++. T Consensus 144 vlcDi-gess~~~~ve~~Rtl~Vlel~~~wl~ 174 (265) T 2oxt_A 144 IMCDV-GESSPKWSVESERTIKILELLEKWKV 174 (265) T ss_dssp EEECC-CCCCSCHHHHHHHHHHHHHHHHHHHH T ss_pred EEECC-CCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99678-77899743221034799999999982 No 259 >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Probab=22.95 E-value=27 Score=15.45 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=16.5 Q ss_pred CEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHH Q ss_conf 1111146773356565227554663478750000 Q gi|254780807|r 75 WIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKN 108 (168) Q Consensus 75 ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~ 108 (168) ++=||+ |.=|+..|+..-...+.+|+++|++. T Consensus 42 VvVIGa--GpAGL~aA~~La~~aG~~V~VlE~~~ 73 (284) T 1rp0_A 42 VVVVGA--GSAGLSAAYEISKNPNVQVAIIEQSV 73 (284) T ss_dssp EEEECC--SHHHHHHHHHHHTSTTSCEEEEESSS T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 899897--78999999999874897599982578 No 260 >3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin monooxygenase, oxidoreductase; HET: FAD; 2.10A {Mesorhizobium loti} PDB: 3gmc_A* Probab=22.94 E-value=27 Score=15.51 Aligned_cols=35 Identities=31% Similarity=0.351 Sum_probs=25.3 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHH Q ss_conf 34431111146773356565227554663478750000 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKN 108 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~ 108 (168) .+.+|+=| |||.=|+.+|+..... +..|+++|+.. T Consensus 46 ~~~~V~IV--GaGpaGl~~A~~Lar~-G~~V~VlEr~~ 80 (415) T 3gmb_A 46 KTRRAEVA--GGGFAGLTAAIALKQN-GWDVRLHEKSS 80 (415) T ss_dssp -CCEEEEE--CCSHHHHHHHHHHHHT-TCEEEEECSSS T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHC-CCCEEEECCCC T ss_conf 98989998--9678999999999968-99999993799 No 261 >2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Probab=22.38 E-value=41 Score=14.45 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHH Q ss_conf 864635643100123443111114677335656522755466347875000 Q gi|254780807|r 57 RHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESK 107 (168) Q Consensus 57 rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~ 107 (168) +.++.|-.++.+...+++++-| |||+-|+-+|-++..+ +..||++++. T Consensus 189 ~~~~~s~~~~~l~~~p~~vvII--GgG~ig~E~A~~l~~l-G~~Vtii~r~ 236 (513) T 2zzc_A 189 EYCISSDDLFSLPYCPGKTLVV--GASYVALECAGFLAGI-GLDVTVMVRS 236 (513) T ss_dssp HHCBCHHHHTTCSSCCCSEEEE--CCSHHHHHHHHHHHHT-TCCEEEEESS T ss_pred CCCCCCHHHHCCCCCCCEEEEE--CCCHHHHHHHHHHHHH-CCEEEEEECC T ss_conf 6651585353713279879998--9889999999999972-9869999827 No 262 >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Probab=22.23 E-value=27 Score=15.44 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=8.3 Q ss_pred CCCEEEECCCCCHHHHHHH Q ss_conf 9869999147998999998 Q gi|254780807|r 141 TCDVISARALADLDTLLEY 159 (168) Q Consensus 141 ~~d~v~sRA~a~l~~ll~~ 159 (168) .+|.|++=+ ++..+.++ T Consensus 231 ~ad~VI~a~--~~~~~~~L 247 (421) T 3nrn_A 231 SFDVAISNV--GVRETVKL 247 (421) T ss_dssp ECSEEEECS--CHHHHHHH T ss_pred ECCEEEECC--CHHHHHHH T ss_conf 989999979--99999986 No 263 >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} Probab=22.01 E-value=25 Score=15.71 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=45.1 Q ss_pred CCCCCCCEEECCCCCHHHHHH-HHCCCCCCCCEEEEEHHHHH----HHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCC Q ss_conf 123443111114677335656-52275546634787500003----8999999999738980998042665331247986 Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIIT-SIQLSSIEGGLVNLIESKNK----KASFLRYVVQKTAARGKVFACRIQEAPQMITTCD 143 (168) Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~l-aI~~p~~~~~~v~Lves~~K----K~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d 143 (168) ++...+++|+|++.| |--- |...+ ....|..+|--.. ...+ ...+-+...+..+........+++| T Consensus 88 l~p~g~VVDLGaapG--GWSqva~~~~--g~~~V~gvDvG~~~~~~p~~~-----~~~~~n~v~~~~~~dv~~~~~~~~D 158 (282) T 3gcz_A 88 VKPTGIVVDLGCGRG--GWSYYAASLK--NVKKVMAFTLGVQGHEKPIMR-----TTLGWNLIRFKDKTDVFNMEVIPGD 158 (282) T ss_dssp CCCCEEEEEETCTTC--HHHHHHHTST--TEEEEEEECCCCTTSCCCCCC-----CBTTGGGEEEECSCCGGGSCCCCCS T ss_pred CCCCCEEEECCCCCC--CHHHHHHHHC--CCCEEEEEEECCCCCCCCCCC-----CCCCCCCEEEEECHHHHHCCCCCCC T ss_conf 575883887377898--4899998753--886799998178766776102-----1147761565420002323887689 Q ss_pred EEEECC-CCC---------HHHHHHHHHHHHCC Q ss_conf 999914-799---------89999984885206 Q gi|254780807|r 144 VISARA-LAD---------LDTLLEYSFPWLYQ 166 (168) Q Consensus 144 ~v~sRA-~a~---------l~~ll~~~~pllk~ 166 (168) +|+|-. +++ .-.+++++.++++. T Consensus 159 ~VlcDia~sS~~~~Vd~~Rtl~Vl~l~~~~L~~ 191 (282) T 3gcz_A 159 TLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE 191 (282) T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 899578777888541201278999999999846 No 264 >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Probab=21.40 E-value=43 Score=14.33 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=25.3 Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC Q ss_conf 234431111146773356565227554663478750000389999999997389 Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA 123 (168) Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L 123 (168) ++.++|+=++|-+|+-|.|-.-.| .=++.=-..|.+....++.- T Consensus 132 ~~~G~IInisS~~~~~~~~~~~~Y----------~asKaal~~lt~~la~El~~ 175 (247) T 2jah_A 132 RSKGTVVQMSSIAGRVNVRNAAVY----------QATKFGVNAFSETLRQEVTE 175 (247) T ss_dssp HHTCEEEEECCGGGTCCCTTCHHH----------HHHHHHHHHHHHHHHHHHGG T ss_pred HCCCEEEEECCHHHCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHCH T ss_conf 869879998225645789997689----------99999999999999998450 No 265 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=21.31 E-value=43 Score=14.32 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=22.5 Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC Q ss_conf 344311111467733565652275546634787500003899999999973898 Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR 124 (168) Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~ 124 (168) ..++|+=++|.+|.=|.|-...| .=++.==..|.+....++.-. T Consensus 151 ~~G~IInisS~~~~~~~~~~~~Y----------~asKaal~~ltk~lA~ela~~ 194 (266) T 3grp_A 151 RYGRIINITSIVGVVGNPGQTNY----------CAAKAGLIGFSKALAQEIASR 194 (266) T ss_dssp TCEEEEEECCC-------CHHHH----------HHHHHHHHHHHHHHHHHHGGG T ss_pred CCCEEEEECCHHHCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHCCC T ss_conf 99289998776654789997799----------999999999999999996624 No 266 >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3o8q_B* Probab=21.07 E-value=43 Score=14.29 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=45.8 Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHH Q ss_conf 0430899999898646356431001234431111146773356565227554663478750000389999999997 Q gi|254780807|r 45 LVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQK 120 (168) Q Consensus 45 Lts~~~~~~~~~rHi~DSl~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~ 120 (168) ++|.+|.-.- +.+++.-......+.+++=+|+||.--++..++..-. ...++++.++..|...+...... T Consensus 103 l~G~NTD~~G----~~~~l~~~~~~~~~~~vlilGaGGaa~ai~~al~~~g--~~~i~v~~r~~~ka~~l~~~~~~ 172 (281) T 3o8q_A 103 ILGDNTDGEG----LVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQ--PASITVTNRTFAKAEQLAELVAA 172 (281) T ss_dssp EEEECCHHHH----HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTC--CSEEEEEESSHHHHHHHHHHHGG T ss_pred EEEEECCHHH----HHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCC--CCEEECCCCCHHHHHHHHHHHHH T ss_conf 9999557166----5403000255766666999654365899999998648--86422116889999999999875 No 267 >2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=20.27 E-value=45 Score=14.19 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=25.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHH---HHHHHHHHHH Q ss_conf 17999899999999999999846321304308999---9989864635 Q gi|254780807|r 18 TYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVE---DFWIRHVEDS 62 (168) Q Consensus 18 ~~~ls~eq~~~l~~y~~ll~~~N~~~NLts~~~~~---~~~~rHi~DS 62 (168) .=+++.+|.+|+..|-+ |||+.+.+ ++..+|=+|- T Consensus 11 e~dl~~eqteKllqFQd----------iTGied~~~Cr~iL~~H~Wdl 48 (67) T 2dam_A 11 ERDLTQEQTEKLLQFQD----------LTGIESMDQCRHTLEQHNWNI 48 (67) T ss_dssp CCCCCHHHHHHHHHHHH----------HHCCSCHHHHHHHHHHHTSCH T ss_pred CCCCCHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHCCCCH T ss_conf 44224999999999987----------107675999999999918859 No 268 >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Probab=20.10 E-value=31 Score=15.11 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=6.4 Q ss_pred CCCCEEEECC Q ss_conf 7986999914 Q gi|254780807|r 140 TTCDVISARA 149 (168) Q Consensus 140 ~~~d~v~sRA 149 (168) ..+|.|++-+ T Consensus 239 ~~ad~VI~~~ 248 (425) T 3ka7_A 239 HDADLVISNL 248 (425) T ss_dssp EECSEEEECS T ss_pred EECCEEEECC T ss_conf 5589999896 Done!