HHsearch alignment for GI: 254780808 and conserved domain: COG0445
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning].
Probab=100.00 E-value=0 Score=1769.31 Aligned_cols=617 Identities=54% Similarity=0.856 Sum_probs=600.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHCCCCHH
T ss_conf 99878569989984204777766436980799973777446503564457735532677524124557776665078653
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 730787855534678784999999999999708996898001011202588-1132220358633445433346643101
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~-~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
T Consensus 81 ~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G 160 (621)
T COG0445 81 MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRG 160 (621)
T ss_pred HCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCEEECCEEEEEECCCCCC
T ss_conf 33677762104506544289999999999854999552476667871337976899992787851068799963344362
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240 (626)
Q Consensus 161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~ 240 (626)
T Consensus 161 ~I~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs~le~q~gD~~~~~fs~~~-~~~~~Qi~C 239 (621)
T COG0445 161 KIHIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGDEPPPVFSFTT-EPHPPQIPC 239 (621)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCCCCCCE
T ss_conf 6886664566777787310577899996594774331689986589866746514376888987413577-777545512
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320 (626)
Q Consensus 241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~ 320 (626)
T Consensus 240 ~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~ 319 (621)
T COG0445 240 YITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQE 319 (621)
T ss_pred EEECCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHH
T ss_conf 45468747899999765427100350234488889977876414788765247866788887638647514669899999
Q ss_pred HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400 (626)
Q Consensus 321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~ 400 (626)
T Consensus 320 ~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGYEEAAaQGliAGiNAal~~~~~~p~i 399 (621)
T COG0445 320 QIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI 399 (621)
T ss_pred HHHHHCCCCCCCEEECCCEEEEECCCCHHHCCCCHHHCEECCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99871846123346213115663230745455413222644627755136873367787624888899999746899824
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480 (626)
Q Consensus 401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~ 480 (626)
T Consensus 400 l~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~ 479 (621)
T COG0445 400 LRRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKS 479 (621)
T ss_pred CCCCCCEEEEEEHHHHCCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36675114567401113799873431100888878761245666616778870788899999999999999999999873
Q ss_pred CCCCCHHHHHHHCC-CC-CCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 36883267662010-12-58866478898548999989998623661139999999988986777798999999999985
Q gi|254780808|r 481 LVLTSKNLSSTSIS-FK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKF 558 (626)
Q Consensus 481 ~~~~p~~~~~~~~~-~~-~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klkk 558 (626)
T Consensus 480 ~~v~p~~~~~~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~p~~~~~~~~v~eqveieiKY~gYI~rq~~~i~~~~~ 559 (621)
T COG0445 480 TWVTPSEVAKELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPADLDAEVLEQVEIEIKYEGYIKRQQEQIEKLKR 559 (621)
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHH
T ss_conf 02570788899998625776430029999638898899998747762336888986762000099999999999999977
Q ss_pred HCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619 (626)
Q Consensus 559 ~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k 619 (626)
T Consensus 560 ~e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsGitpadI~~Ll~~l~~~~~~ 620 (621)
T COG0445 560 LENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGVTPADISILLVYLKKGKNK 620 (621)
T ss_pred HHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 6445698766843246433999999851599847776405799999999999998530137