HHsearch alignment for GI: 254780808 and conserved domain: COG1206
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=771.44 Aligned_cols=365 Identities=25% Similarity=0.308 Sum_probs=327.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076---------260124667002211----22489999986303
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----GKGHLVREIDALDG 67 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------~~~ael~Cnps~gg~----akg~L~~Ei~aLgg 67 (626)
T Consensus 1 ~~~~~--i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgS 78 (439)
T COG1206 1 MMQQP--INVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGS 78 (439)
T ss_pred CCCCC--EEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98772--5897565445199999987698379997045668975445652430212554640344445788999997211
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r 68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147 (626)
Q Consensus 68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~ 147 (626)
T Consensus 79 lii~~Ad~~~V----------PAGgAL-A-VDR~~Fs~~vT~~l~~hpli~vireEvt~iP~dg---------------- 130 (439)
T COG1206 79 LIIEAADKHRV----------PAGGAL-A-VDRDGFSQAVTEKLENHPLIEVIREEVTEIPPDG---------------- 130 (439)
T ss_pred HHHHHHHHCCC----------CCCCEE-E-ECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----------------
T ss_conf 78664154068----------887604-6-6176778999999853997798711014689988----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf 543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226 (626)
Q Consensus 148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~ 226 (626)
T Consensus 131 -~~vIATGPLTs~--------------------~La~~i~~ltG~d~l~FyDAaAPIi~~dSIdmd~~~~~sRYdKg~-a 188 (439)
T COG1206 131 -ITVIATGPLTSD--------------------ALAEKIKELTGEDYLYFYDAAAPIIEFDSIDMDKAYLKSRYDKGE-A 188 (439)
T ss_pred -CEEEECCCCCCH--------------------HHHHHHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHCCCCCC-C
T ss_conf -579960898978--------------------899999986087527762124743320554347777650035564-1
Q ss_pred CCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCCCCCEE
Q ss_conf 74356578000-------0000012320014777640245754144323564222553212335--6--76433452013
Q gi|254780808|r 227 SFMTDKITNRQ-------IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--R--FGERNGHQIFL 295 (626)
Q Consensus 227 s~~~~~~~~~q-------~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~--~~~~p~h~VqL 295 (626)
T Consensus 189 ~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~FegCmPIE~mA~rG~~Tl~~GPmKPvGL~~p~~~tgk~pYAVVQL 268 (439)
T COG1206 189 DYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEGCMPIEVMAERGRKTLRFGPMKPVGLEDPRDPTGKRPYAVVQL 268 (439)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 12069888999999999997434578344125612145676999986270001248888757778877778886179985
Q ss_pred EECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCH
Q ss_conf 0157877645434776668988999999875434001001100012110235-456567765403341566213304334
Q gi|254780808|r 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTG 374 (626)
Q Consensus 296 rpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteG 374 (626)
T Consensus 269 Rqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EG 348 (439)
T COG1206 269 RQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEG 348 (439)
T ss_pred ECCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHCCCEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHH
T ss_conf 20465664465430130352102554655367831114442033011353587666457750245888277325404215
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 66666677899999874203345654653210799999988607
Q gi|254780808|r 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418 (626)
Q Consensus 375 YeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitk 418 (626)
T Consensus 349 YveSaA~Gllag~naa~~~~g~~~~~~P-~tT~~Gal~~yIt~~ 391 (439)
T COG1206 349 YVESAASGLLAGINAARLALGEEPLIPP-PTTALGALVNYITGA 391 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCC
T ss_conf 4677653378766799986589877798-445788899997337