HHsearch alignment for GI: 254780808 and conserved domain: COG1635
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism].
Probab=98.17 E-value=6.6e-06 Score=61.50 Aligned_cols=133 Identities=26% Similarity=0.344 Sum_probs=79.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 357889889426899999998589989999807626012466700221-1-22489999986303999999886314887
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-L-GKGHLVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg-~-akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~----------ls~GGG~w~GGmlf~~iVv-~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK----------LSFGGGIWGGGMLFNKIVV-REEADEILDEFGIRYEE 98 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEE----------CCCCCCCCCCCCCCCCEEE-CCHHHHHHHHHCCCCEE
T ss_conf 326799876850578999998679649999730----------1468763344333560444-25389999981985244
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC-CEEEEEECCCCC-----------CCCCCC
Q ss_conf 30787855534678784999999999999708996898001011202588-113222035863-----------344543
Q gi|254780808|r 83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSM-----------IRCSTV 150 (626)
Q Consensus 83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~-~~~~v~~~~g~~-----------~~~~~v 150 (626)
T Consensus 99 -------~e~g~~v-~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~V 170 (262)
T COG1635 99 -------EEDGYYV-ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAV 170 (262)
T ss_pred -------CCCCEEE-ECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCHHHHCCCCCCCCEEEEEEE
T ss_conf -------5796698-32799999999998730810242324778998169946899982512220565427511247899
Q ss_pred CCCCCC
Q ss_conf 334664
Q gi|254780808|r 151 VLTTGT 156 (626)
Q Consensus 151 iiatGt 156 (626)
T Consensus 171 vDaTGH 176 (262)
T COG1635 171 VDATGH 176 (262)
T ss_pred EECCCC
T ss_conf 967888