HHsearch alignment for GI: 254780808 and conserved domain: COG2072
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].
Probab=98.13 E-value=1.1e-05 Score=60.02 Aligned_cols=346 Identities=15% Similarity=0.136 Sum_probs=153.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHH-------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858998-999980762-------601246670022112248999998630399999
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTS-------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV 72 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~-------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~ 72 (626)
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p----~~~~-------------- 65 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSP----KWLL-------------- 65 (443)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC----CCCC--------------
T ss_conf 7667554899898788999999999759986799970576678655566871676797----4011--------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCC--C
Q ss_conf 98863148873078785553467878499999999999970---899689800101120258811322203586334--4
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS---QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR--C 147 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~---~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~--~ 147 (626)
T Consensus 66 -~~~~~p~~------~~~~~~~~~~-~~~----y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a 133 (443)
T COG2072 66 -GFPFLPFR------WDEAFAPFAE-IKD----YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTA 133 (443)
T ss_pred -CCCCCCCC------CCCCCCCCCC-HHH----HHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEEC
T ss_conf -58888877------6556777643-899----99999998356045021452568863058870699964887522512
Q ss_pred CCCCCCCCCCCHHHHHH--HHCC----------------CCCCCC---C-CCCCCCCCCHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 54333466431013444--3202----------------332224---7-511133100001011200544445441011
Q gi|254780808|r 148 STVVLTTGTFLRGVIHI--GKLK----------------IPAGRM---G-DSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205 (626)
Q Consensus 148 ~~viiatGtfl~g~~~~--g~~~----------------~~~gr~---~-~~~s~~ls~~l~~~~~~~~r~ktgtppri~ 205 (626)
T Consensus 134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~qRs~~~~~ 212 (443)
T COG2072 134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLSQRSPPHIL 212 (443)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCC-CEEEEEECCCCCCC
T ss_conf 67998305789897888788666686344410169613427887999898703999999997306-71789851797520
Q ss_pred HCHHHHHH-HHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00001344-32114787-6687774356578000000001232-----00147776402457541443235642225532
Q gi|254780808|r 206 GKTIIWDK-TEKQFADE-RLIPFSFMTDKITNRQIECGITRTN-----LETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278 (626)
Q Consensus 206 ~~sidf~~-~e~q~~d~-~~~~~s~~~~~~~~~q~~~~~~~t~-----~~~~~~~~~~~~~~~~~~g~~~~~gprycPsi 278 (626)
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 292 (443)
T COG2072 213 PKPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGD 292 (443)
T ss_pred CCHHCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECEEECCCCCCCHHHHHHHHCCCHHCCCCCCCCCHHCCCCCCCCCC
T ss_conf 33101565204333320266432122110121010103102567621456665113111003556550100576667665
Q ss_pred CCCC---CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCEEEECCHHHHCCCCHHHHHH
Q ss_conf 1233---5676433452013015787764543477666898899999987543400--1001100012110235456567
Q gi|254780808|r 279 EDKI---VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK--VNIIRPGYAIEYDYINPKELFP 353 (626)
Q Consensus 279 e~k~---~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEn--Aef~R~Gy~ieyd~~~P~~L~~ 353 (626)
T Consensus 293 ~r~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (443)
T COG2072 293 GRLVPDGDLFEAGASGDVEVVTEIIDRFT--EGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYK 370 (443)
T ss_pred CCEEECCCHHHHHCCCCCEEEECCCCCCC--CCCEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEC
T ss_conf 63300333223101477405663000466--7623058875000406871378741010012044154321346652211
Q ss_pred HHHHHCCCEEEEEEEEECCCHHHHHH
Q ss_conf 76540334156621330433466666
Q gi|254780808|r 354 TLETKKISGLFLAGQINGTTGYEEAA 379 (626)
Q Consensus 354 tLe~k~~~~LffAGQI~GteGYeEAA 379 (626)
T Consensus 371 g~~~~~~pn~~~~~~~~~~~~~~~~~ 396 (443)
T COG2072 371 GLALSGGPNLFLIGGPTKASGGLKAA 396 (443)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 52004787257744766751010167