HHsearch alignment for GI: 254780808 and conserved domain: COG4529
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=97.02 E-value=0.0053 Score=40.85 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=83.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 578898894268999999985899---8999980762601246670022112248999998630399999988631----
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGA---STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI---- 78 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~---~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i---- 78 (626)
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~----p~~---------~lNv~a~~mS~~~pD~ 68 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE----PEH---------LLNVPAARMSAFAPDI 68 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC----CHH---------HHCCCCCCCCCCCCCC
T ss_conf 518997886579999999984788777567853555457875578888----214---------4216202354458998
Q ss_pred ---HHHHHCCC----C-----CCCCCCHHHHHHHHHHHHHHHHHHHCC----C--CCEEEHHHHCCCCCC-CCCEEEEEE
Q ss_conf ---48873078----7-----855534678784999999999999708----9--968980010112025-881132220
Q gi|254780808|r 79 ---QFRVLNVK----K-----GPAVRGPRTQADRELYRLAMQREILSQ----E--NLDVIQGEVAGFNTE-KNIISSIVM 139 (626)
Q Consensus 79 ---~~r~ln~s----k-----GpAv~alraqvDR~~fs~~vt~~l~~~----p--ni~i~~~eV~~l~~~-~~~~~~v~~ 139 (626)
T Consensus 69 p~~F~~WL~~~~~~~~d~~~~~~d~~~y---~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~ 145 (474)
T COG4529 69 PQDFVRWLQKQLQRYRDPEDINHDGQAY---PPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTT 145 (474)
T ss_pred CHHHHHHHHHCCCCCCCHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEEC
T ss_conf 1689999974255657754437765346---6156999999999999997367640467764443010045773578965
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 35863344543334664
Q gi|254780808|r 140 QDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 140 ~~g~~~~~~~viiatGt 156 (626)
T Consensus 146 ~~g~~~~ad~~Vlatgh 162 (474)
T COG4529 146 ADGPSEIADIIVLATGH 162 (474)
T ss_pred CCCCEEEEEEEEEECCC
T ss_conf 88870450179994368