HHsearch alignment for GI: 254780808 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=100.00 E-value=0 Score=1832.44 Aligned_cols=616 Identities=53% Similarity=0.853 Sum_probs=605.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
T Consensus 2 ~~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~ 81 (621)
T PRK05192 2 YYPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQF 81 (621)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98887988998975799999999996799679996581311586045203672165766687753689999998876168
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 87307878555346787849999999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
T Consensus 82 r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlttGTFL~G 161 (621)
T PRK05192 82 RMLNTSKGPAVRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLTTGTFLRG 161 (621)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCCC
T ss_conf 76158888300673988859999999999996499978998145799987999999996687099852699831564562
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240 (626)
Q Consensus 161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~ 240 (626)
T Consensus 162 ~ihiG~~~~~~GR~Ge~~s~~Ls~~l~~~gf~~gRlKTGTPpRl~~~SId~s~le~Q~gD~~p~pFSf~~~~~~~~q~~C 241 (621)
T PRK05192 162 KIHIGEKSYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGDEDPPPFSFMTAEIHPPQIPC 241 (621)
T ss_pred EEEECCEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68755501146677760345889999973997000147998510367668866731469999844524677778675632
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320 (626)
Q Consensus 241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~ 320 (626)
T Consensus 242 ~iT~Tn~~th~iI~~nl~~Spmy~G~I~g~GPRYCPSIEdKVvRF~dk~~HqiFLEPEGl~t~~iY~NG~STSLP~evQ~ 321 (621)
T PRK05192 242 YITYTNEKTHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGLDTNEVYPNGISTSLPEDVQL 321 (621)
T ss_pred CCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCHHHHH
T ss_conf 02264488999998156347512786612699999988998601325566323670156778757526755678989999
Q ss_pred HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400 (626)
Q Consensus 321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~ 400 (626)
T Consensus 322 ~~lrsIpGLE~a~i~rpGYAIEYDyvdP~qL~~tLEtK~i~gLf~AGQINGTTGYEEAAaQGliAGINAa~~~~~~~p~i 401 (621)
T PRK05192 322 EMLRSIPGLENAEILRPGYAIEYDYFDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI 401 (621)
T ss_pred HHHHCCCCCCEEEEEECCEEEEECEECHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 99852757551699751114664405723433353316559877777667750789988546798999999965999876
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480 (626)
Q Consensus 401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~ 480 (626)
T Consensus 402 l~R~eaYIGVlIDDLvtkGv~EPYRMFTSRAEyRL~LR~DNAD~RLt~~g~~~Glv~~~r~~~~~~k~~~~~~~~~~L~~ 481 (621)
T PRK05192 402 LKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKS 481 (621)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 46031124441566760799964103304777776513665888879999984998899999999999999999999962
Q ss_pred CCCCCHHHHHHHC---CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3688326766201---0125886647889854899998999862366113999999998898677779899999999998
Q gi|254780808|r 481 LVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557 (626)
Q Consensus 481 ~~~~p~~~~~~~~---~~~~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klk 557 (626)
T Consensus 482 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lL~rp~v~~~~l~~~~~~---~~~~v~~~veie~kY~gYi~Rq~~~i~~~~ 558 (621)
T PRK05192 482 TRVTPNEEAVNELLALGGAPLKRGVSLADLLRRPEITYEDLAELLPA---LDPEVAEQVEIEIKYEGYIERQQEEIEKLK 558 (621)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83380167776776447777788713999838999899999865657---999999999998402999999999999997
Q ss_pred HHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 51157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619 (626)
Q Consensus 558 k~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k 619 (626)
T Consensus 559 ~~e~~~IP~~~dY~~i~gLS~E~~eKL~~~rP~TlgqAsRI~GvtPa~i~~Ll~~lk~~~~~ 620 (621)
T PRK05192 559 RLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISGVTPADISILLVYLKKRGRK 620 (621)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 34689893997956785356999999974699998899668998999999999999986569