HHsearch alignment for GI: 254780808 and conserved domain: PRK05192

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=100.00  E-value=0  Score=1832.44  Aligned_cols=616  Identities=53%  Similarity=0.853  Sum_probs=605.9

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
T Consensus         2 ~~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~   81 (621)
T PRK05192          2 YYPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQF   81 (621)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             98887988998975799999999996799679996581311586045203672165766687753689999998876168


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             87307878555346787849999999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g  160 (626)
T Consensus        82 r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlttGTFL~G  161 (621)
T PRK05192         82 RMLNTSKGPAVRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLTTGTFLRG  161 (621)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCCC
T ss_conf             76158888300673988859999999999996499978998145799987999999996687099852699831564562


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r  161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC  240 (626)
Q Consensus       161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~  240 (626)
T Consensus       162 ~ihiG~~~~~~GR~Ge~~s~~Ls~~l~~~gf~~gRlKTGTPpRl~~~SId~s~le~Q~gD~~p~pFSf~~~~~~~~q~~C  241 (621)
T PRK05192        162 KIHIGEKSYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGDEDPPPFSFMTAEIHPPQIPC  241 (621)
T ss_pred             EEEECCEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             68755501146677760345889999973997000147998510367668866731469999844524677778675632


Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf             00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r  241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH  320 (626)
Q Consensus       241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~  320 (626)
T Consensus       242 ~iT~Tn~~th~iI~~nl~~Spmy~G~I~g~GPRYCPSIEdKVvRF~dk~~HqiFLEPEGl~t~~iY~NG~STSLP~evQ~  321 (621)
T PRK05192        242 YITYTNEKTHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGLDTNEVYPNGISTSLPEDVQL  321 (621)
T ss_pred             CCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCHHHHH
T ss_conf             02264488999998156347512786612699999988998601325566323670156778757526755678989999


Q ss_pred             HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r  321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC  400 (626)
Q Consensus       321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~  400 (626)
T Consensus       322 ~~lrsIpGLE~a~i~rpGYAIEYDyvdP~qL~~tLEtK~i~gLf~AGQINGTTGYEEAAaQGliAGINAa~~~~~~~p~i  401 (621)
T PRK05192        322 EMLRSIPGLENAEILRPGYAIEYDYFDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI  401 (621)
T ss_pred             HHHHCCCCCCEEEEEECCEEEEECEECHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             99852757551699751114664405723433353316559877777667750789988546798999999965999876


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r  401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS  480 (626)
Q Consensus       401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~  480 (626)
T Consensus       402 l~R~eaYIGVlIDDLvtkGv~EPYRMFTSRAEyRL~LR~DNAD~RLt~~g~~~Glv~~~r~~~~~~k~~~~~~~~~~L~~  481 (621)
T PRK05192        402 LKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKS  481 (621)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             46031124441566760799964103304777776513665888879999984998899999999999999999999962


Q ss_pred             CCCCCHHHHHHHC---CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3688326766201---0125886647889854899998999862366113999999998898677779899999999998
Q gi|254780808|r  481 LVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK  557 (626)
Q Consensus       481 ~~~~p~~~~~~~~---~~~~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klk  557 (626)
T Consensus       482 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lL~rp~v~~~~l~~~~~~---~~~~v~~~veie~kY~gYi~Rq~~~i~~~~  558 (621)
T PRK05192        482 TRVTPNEEAVNELLALGGAPLKRGVSLADLLRRPEITYEDLAELLPA---LDPEVAEQVEIEIKYEGYIERQQEEIEKLK  558 (621)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             83380167776776447777788713999838999899999865657---999999999998402999999999999997


Q ss_pred             HHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             51157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r  558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK  619 (626)
Q Consensus       558 k~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k  619 (626)
T Consensus       559 ~~e~~~IP~~~dY~~i~gLS~E~~eKL~~~rP~TlgqAsRI~GvtPa~i~~Ll~~lk~~~~~  620 (621)
T PRK05192        559 RLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISGVTPADISILLVYLKKRGRK  620 (621)
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             34689893997956785356999999974699998899668998999999999999986569