HHsearch alignment for GI: 254780808 and conserved domain: PRK05335

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed.
Probab=100.00  E-value=0  Score=878.87  Aligned_cols=364  Identities=26%  Similarity=0.311  Sum_probs=317.2

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---------HHHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf             9876357889889426899999998589989999807---------6260124667002211----22489999986303
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---------TSTIGSMSCNPAIGGL----GKGHLVREIDALDG   67 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~---------~~~~ael~Cnps~gg~----akg~L~~Ei~aLgg   67 (626)
T Consensus         1 ~m~~~--ViVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgg   78 (434)
T PRK05335          1 MMMKP--VNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS   78 (434)
T ss_pred             CCCCC--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             99885--6998986899999999996899679999335667776246663687356456888644420589999998469


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r   68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC  147 (626)
Q Consensus        68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~  147 (626)
T Consensus        79 lm~~~aD~~~v----------PAg~al-a-VDR~~y~~~m~~~l~~~pni~i~~~eV~~i~~~~----------------  130 (434)
T PRK05335         79 LIIEAADAHRV----------PAGGAL-A-VDREGFSAYVTEALKNHPLITVIREEVTEIPEDG----------------  130 (434)
T ss_pred             HHHHHHHHHCC----------CCCCHH-H-HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----------------
T ss_conf             89999898667----------872178-9-9899999999999974999499984402557889----------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf             543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r  148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF  226 (626)
Q Consensus       148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~  226 (626)
T Consensus       131 -~vIiaTGplts~--------------------~L~~~l~~~~G~~~l~f~da~~P~v~~~SID~~~~~~~sr~~kg~~-  188 (434)
T PRK05335        131 -ITIIATGPLTSD--------------------ALAEAIKALTGEDYLYFFDAAAPIVEKDSIDMDKAYLASRYDKGEA-  188 (434)
T ss_pred             -CEEEECCCCCHH--------------------HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCC-
T ss_conf             -889961756769--------------------9999999861964211246778532346546023100356688975-


Q ss_pred             CCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEE
Q ss_conf             7435657800000000123-------20014777640245754144323564222553212335--67643345201301
Q gi|254780808|r  227 SFMTDKITNRQIECGITRT-------NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--RFGERNGHQIFLEP  297 (626)
Q Consensus       227 s~~~~~~~~~q~~~~~~~t-------~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~~~~~p~h~VqLrp  297 (626)
T Consensus       189 dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feGC~pIE~~a~rg~~~lrfgp~kPvGL~dp~~~~~p~avVqLr~  268 (434)
T PRK05335        189 DYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEGCLPIEVMAERGRETLRFGPMKPVGLEDPRTGKRPYAVVQLRQ  268 (434)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             52238998799889998752002035665445766578877887741476532026765667778998986644898256


Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCHHH
Q ss_conf             57877645434776668988999999875434001001100012110235-45656776540334156621330433466
Q gi|254780808|r  298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYE  376 (626)
Q Consensus       298 E~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteGYe  376 (626)
T Consensus       269 En~~~~~ynlvGfsTsLp~~~Q~~i~r~IPGLEnaei~RyG~~~~ndyi~sP~~L~~tLe~K~~~~Lf~AGQInGt~GYe  348 (434)
T PRK05335        269 DNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKSRPNLFFAGQITGVEGYV  348 (434)
T ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCCCCHHHCCCCEEECCCCCCEECCCCCCCHHHH
T ss_conf             67666645402443579859999998718673423354322333011047865548441634879827711336741889


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             66667789999987420334565465321079999998860
Q gi|254780808|r  377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS  417 (626)
Q Consensus       377 EAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLit  417 (626)
T Consensus       349 EAAAqGliAGiNAa~~~~Gk~p~~~p~~t~-~GaL~~~i~~  388 (434)
T PRK05335        349 ESAASGLLAGINAARLALGKEPVVPPPTTA-LGALLNYITG  388 (434)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHCC
T ss_conf             999988999999999966999989880318-9999998448