HHsearch alignment for GI: 254780808 and conserved domain: PRK05335
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed.
Probab=100.00 E-value=0 Score=878.87 Aligned_cols=364 Identities=26% Similarity=0.311 Sum_probs=317.2
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---------HHHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf 9876357889889426899999998589989999807---------6260124667002211----22489999986303
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---------TSTIGSMSCNPAIGGL----GKGHLVREIDALDG 67 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~---------~~~~ael~Cnps~gg~----akg~L~~Ei~aLgg 67 (626)
T Consensus 1 ~m~~~--ViVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgg 78 (434)
T PRK05335 1 MMMKP--VNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS 78 (434)
T ss_pred CCCCC--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99885--6998986899999999996899679999335667776246663687356456888644420589999998469
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r 68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147 (626)
Q Consensus 68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~ 147 (626)
T Consensus 79 lm~~~aD~~~v----------PAg~al-a-VDR~~y~~~m~~~l~~~pni~i~~~eV~~i~~~~---------------- 130 (434)
T PRK05335 79 LIIEAADAHRV----------PAGGAL-A-VDREGFSAYVTEALKNHPLITVIREEVTEIPEDG---------------- 130 (434)
T ss_pred HHHHHHHHHCC----------CCCCHH-H-HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----------------
T ss_conf 89999898667----------872178-9-9899999999999974999499984402557889----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf 543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226 (626)
Q Consensus 148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~ 226 (626)
T Consensus 131 -~vIiaTGplts~--------------------~L~~~l~~~~G~~~l~f~da~~P~v~~~SID~~~~~~~sr~~kg~~- 188 (434)
T PRK05335 131 -ITIIATGPLTSD--------------------ALAEAIKALTGEDYLYFFDAAAPIVEKDSIDMDKAYLASRYDKGEA- 188 (434)
T ss_pred -CEEEECCCCCHH--------------------HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCC-
T ss_conf -889961756769--------------------9999999861964211246778532346546023100356688975-
Q ss_pred CCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEE
Q ss_conf 7435657800000000123-------20014777640245754144323564222553212335--67643345201301
Q gi|254780808|r 227 SFMTDKITNRQIECGITRT-------NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--RFGERNGHQIFLEP 297 (626)
Q Consensus 227 s~~~~~~~~~q~~~~~~~t-------~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~~~~~p~h~VqLrp 297 (626)
T Consensus 189 dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feGC~pIE~~a~rg~~~lrfgp~kPvGL~dp~~~~~p~avVqLr~ 268 (434)
T PRK05335 189 DYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEGCLPIEVMAERGRETLRFGPMKPVGLEDPRTGKRPYAVVQLRQ 268 (434)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 52238998799889998752002035665445766578877887741476532026765667778998986644898256
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCHHH
Q ss_conf 57877645434776668988999999875434001001100012110235-45656776540334156621330433466
Q gi|254780808|r 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYE 376 (626)
Q Consensus 298 E~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteGYe 376 (626)
T Consensus 269 En~~~~~ynlvGfsTsLp~~~Q~~i~r~IPGLEnaei~RyG~~~~ndyi~sP~~L~~tLe~K~~~~Lf~AGQInGt~GYe 348 (434)
T PRK05335 269 DNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKSRPNLFFAGQITGVEGYV 348 (434)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCCCCHHHCCCCEEECCCCCCEECCCCCCCHHHH
T ss_conf 67666645402443579859999998718673423354322333011047865548441634879827711336741889
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 66667789999987420334565465321079999998860
Q gi|254780808|r 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417 (626)
Q Consensus 377 EAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLit 417 (626)
T Consensus 349 EAAAqGliAGiNAa~~~~Gk~p~~~p~~t~-~GaL~~~i~~ 388 (434)
T PRK05335 349 ESAASGLLAGINAARLALGKEPVVPPPTTA-LGALLNYITG 388 (434)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHCC
T ss_conf 999988999999999966999989880318-9999998448