HHsearch alignment for GI: 254780808 and conserved domain: PRK12770
>PRK12770 putative glutamate synthase subunit beta; Provisional.
Probab=97.87 E-value=3.7e-05 Score=56.14 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=48.3
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECC-CHHHHH
Q ss_conf 764543477666898899999987543400--10011000121102354565677654033415662133043-346666
Q gi|254780808|r 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEK--VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYEEA 378 (626)
Q Consensus 302 ~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEn--Aef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gt-eGYeEA 378 (626)
T Consensus 275 D~vlvavG~~P~~~~------------~~~~gv~ld~~G~-I--------~vd~~~~T-svpgIyAaGDv~~g~~~a~~A 332 (350)
T PRK12770 275 DTVITAIGEIPTPPF------------KKELGIELNRDGE-I--------KVDEKHMT-SREGVFAAGDVVTGPSKIGKA 332 (350)
T ss_pred CEEEEEECCCCCCCH------------HHHCCEEECCCCE-E--------EECCCCEE-CCCCEEEEECCCCCHHHHHHH
T ss_conf 789999777788413------------5415912889981-9--------86989744-899999801687888899999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 667789999987420334
Q gi|254780808|r 379 AAQGLVAGINSARKSNKL 396 (626)
Q Consensus 379 AAqGl~AGiNa~~~~~~~ 396 (626)
T Consensus 333 ~~eG~~AA~~i~~yL~g~ 350 (350)
T PRK12770 333 LKSGLRAAQSIHEWLLGK 350 (350)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987769