HHsearch alignment for GI: 254780808 and conserved domain: PRK12814
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=97.32 E-value=0.00068 Score=47.20 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=70.6
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE-EECCCHHHHHHHH
Q ss_conf 645434776668988999999875434001001100012110235456567765403341566213-3043346666667
Q gi|254780808|r 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ-INGTTGYEEAAAQ 381 (626)
Q Consensus 303 ~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ-I~GteGYeEAAAq 381 (626)
T Consensus 428 ~VI~AIGQ~~d~~~~~-------~~gl~---~~~~G~-i~v---d~----~t~~T-s~~gVFAgGD~v~Gp~tvV~AIa~ 488 (652)
T PRK12814 428 TVISAIGQQVDPPIAE-------AAGIG---TSRNGT-VKV---DP----ETLQT-SVAGVFAGGDCVTGADIAINAVEQ 488 (652)
T ss_pred EEEECCCCCCCCCHHH-------CCCCC---CCCCCC-EEE---CC----CCCCC-CCCCEEECCCCCCCCHHHHHHHHH
T ss_conf 8998458788833222-------45863---668998-885---88----88743-999999898887684499999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 7899999874203345654653-210799999988607877402442000122121157871366888
Q gi|254780808|r 382 GLVAGINSARKSNKLDCICFSR-TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448 (626)
Q Consensus 382 Gl~AGiNa~~~~~~~~p~~l~R-~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~ 448 (626)
T Consensus 489 Gr~AA~~Id~yL~G~~~~~~~~~~~~~~~~~--~~----~p~~~~~~~-~~~~R~~~p~l~~~~R~~~ 549 (652)
T PRK12814 489 GKRAAHAIDLFLNGKPVTAPVQPFNSSYGPR--DK----APEAFYDRA-QPAPRVALPELPLEERTGG 549 (652)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH--HC----CCHHHHCCC-CCCCCCCCCCCCHHHHHCC
T ss_conf 9999999999858999777876542221122--03----745553145-6565455776899997069