HHsearch alignment for GI: 254780808 and conserved domain: PTZ00139
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional.
Probab=99.26 E-value=1.6e-10 Score=94.22 Aligned_cols=153 Identities=24% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCCH--H---------HHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076260124667002---21122--4---------89999986303
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLGK--G---------HLVREIDALDG 67 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~ak--g---------~L~~Ei~aLgg 67 (626)
T Consensus 31 ~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~-----~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlkaG~~ 105 (622)
T PTZ00139 31 IDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLF-----PTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW 105 (622)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-----CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 5776587999966999999999997699089997889-----99974899987787406789999989999999986268
Q ss_pred -----HHHHHHHHHHHHHHHHCC--------CC---------------CCCCCCHHH--HHHHHHH--HHHHHHHHHCCC
Q ss_conf -----999999886314887307--------87---------------855534678--7849999--999999997089
Q gi|254780808|r 68 -----LMGRVADAAGIQFRVLNV--------KK---------------GPAVRGPRT--QADRELY--RLAMQREILSQE 115 (626)
Q Consensus 68 -----~m~~~aD~~~i~~r~ln~--------sk---------------GpAv~alra--qvDR~~f--s~~vt~~l~~~p 115 (626)
T Consensus 106 l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~ 185 (622)
T PTZ00139 106 LGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQSLQYN 185 (622)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 77999999999989999999997799722579987812156772034667874157887578619999999999998659
Q ss_pred CCEEEHHHHCCCCC-CCCCEEEEEEC---CCC--CCCCCCCCCCCCCCCH
Q ss_conf 96898001011202-58811322203---586--3344543334664310
Q gi|254780808|r 116 NLDVIQGEVAGFNT-EKNIISSIVMQ---DNS--MIRCSTVVLTTGTFLR 159 (626)
Q Consensus 116 ni~i~~~eV~~l~~-~~~~~~~v~~~---~g~--~~~~~~viiatGtfl~ 159 (626)
T Consensus 186 i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~ 235 (622)
T PTZ00139 186 CNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGR 235 (622)
T ss_pred CEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCC
T ss_conf 97999889999997589959999999778990999971369987787543