HHsearch alignment for GI: 254780808 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.83 E-value=0.027 Score=35.86 Aligned_cols=59 Identities=29% Similarity=0.481 Sum_probs=44.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC--CCCCCCCHH-HHHHHHHHHHH
Q ss_conf 78898894268999999985899899998076260124667--002211224-89999986303
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKG-HLVREIDALDG 67 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn--ps~gg~akg-~L~~Ei~aLgg 67 (626)
T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfE-R~DR~GGLL~YGIPnmK-LdK~e~v~RRi~~l~a 214 (517)
T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFE-REDRVGGLLRYGIPNMK-LDKEEIVDRRIDLLEA 214 (517)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 68997567579999999853588389974-36788863024888743-3738899999999874