HHsearch alignment for GI: 254780808 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=96.87 E-value=0.0013 Score=45.11 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-C-CCCCC-CCHHH---HHHHHHHHHH--HHHHHH
Q ss_conf 876357889889426899999998589989999807626012466-7-00221-12248---9999986303--999999
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-N-PAIGG-LGKGH---LVREIDALDG--LMGRVA 73 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-n-ps~gg-~akg~---L~~Ei~aLgg--~m~~~a 73 (626)
T Consensus 173 ~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT 252 (1026)
T TIGR01372 173 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTT 252 (1026)
T ss_pred EEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 42320478878896799999999647988999706765777556778760178018999999999974189816743540
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 88631488730787855534678784999999999999708996898001011202588113222035863344543334
Q gi|254780808|r 74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153 (626)
Q Consensus 74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viia 153 (626)
T Consensus 253 -----------------~~G~-----------------YD~N~~g~~ER~~DHL~~P~~---g~~ReRlWrvRAkrvVLA 295 (1026)
T TIGR01372 253 -----------------AFGY-----------------YDHNTVGALERVTDHLDAPAK---GVPRERLWRVRAKRVVLA 295 (1026)
T ss_pred -----------------EEEE-----------------ECCCEEEEEEEHHCCCCCCCC---CCCCCEEEEECCCEEEEC
T ss_conf -----------------5545-----------------147747876201136677887---485330577725345660
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 664310134443202332224751113310000101120054
Q gi|254780808|r 154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR 195 (626)
Q Consensus 154 tGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r 195 (626)
T Consensus 296 ~GA~ERPlVF~nND-----~PGvMlA~A~~~YlnRygV~pG~ 332 (1026)
T TIGR01372 296 TGALERPLVFANND-----RPGVMLAGAARTYLNRYGVAPGK 332 (1026)
T ss_pred CCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57644778688319-----53233367999988875005487