HHsearch alignment for GI: 254780808 and conserved domain: TIGR01984
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.55 E-value=0.00027 Score=50.01 Aligned_cols=146 Identities=15% Similarity=0.283 Sum_probs=96.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCHHHCCCCCCC--C------CCCC------CC--HHHHHHHHHHH
Q ss_conf 7889889426899999998589-----9899998076260124667--0------0221------12--24899999863
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG-----ASTALITHKTSTIGSMSCN--P------AIGG------LG--KGHLVREIDAL 65 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G-----~~v~L~~~~~~~~ael~Cn--p------s~gg------~a--kg~L~~Ei~aL 65 (626)
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~ 80 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPF 80 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 97888565899999999850677557615898656574424686423565046876899999985386331257886013
Q ss_pred -HHHHHHH--HHHHH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCC-----
Q ss_conf -0399999--98863---1488730787855534678784999999999999708996898-0010112025881-----
Q gi|254780808|r 66 -DGLMGRV--ADAAG---IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNI----- 133 (626)
Q Consensus 66 -gg~m~~~--aD~~~---i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~----- 133 (626)
T Consensus 81 ratpI~~IhVSD~g~fG~~~~---~~~-~~~~~aLGyVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveql 156 (425)
T TIGR01984 81 RATPIKDIHVSDQGHFGATEL---RAS-EFGLPALGYVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQL 156 (425)
T ss_pred CCCCCCEEEEEECCCEEEEEE---CHH-HCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECC
T ss_conf 678775168864583001341---253-6287645314217899999999986256651125753211210578630005
Q ss_pred --------EEEEEE-CCCC----CCCCCCCCCCCCC
Q ss_conf --------132220-3586----3344543334664
Q gi|254780808|r 134 --------ISSIVM-QDNS----MIRCSTVVLTTGT 156 (626)
Q Consensus 134 --------~~~v~~-~~g~----~~~~~~viiatGt 156 (626)
T Consensus 157 PradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGG 192 (425)
T TIGR01984 157 PRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGG 192 (425)
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCC
T ss_conf 666655103578883088756405553088985586