HHsearch alignment for GI: 254780808 and conserved domain: TIGR02374

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.04  E-value=0.0034  Score=42.19  Aligned_cols=104  Identities=22%  Similarity=0.382  Sum_probs=66.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK   87 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk   87 (626)
T Consensus       150 GaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L-----------------M~~QLD~~aG~lL~----------------  196 (813)
T TIGR02374       150 GAVIGGGLLGLEAARALKNLGMDVSVIELAPFL-----------------MAKQLDQTAGRLLQ----------------  196 (813)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH-----------------HHHHHHHHHHHHHH----------------
T ss_conf             558867415889999998779706446764898-----------------99999999999999----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             855534678784999999999999-708996898001011202588113222035863344543334664310134
Q gi|254780808|r   88 GPAVRGPRTQADRELYRLAMQREI-LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI  162 (626)
Q Consensus        88 GpAv~alraqvDR~~fs~~vt~~l-~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~  162 (626)
T Consensus       197 ------------~~le~~G~~~l~Gt~k~t~eiv~~~------d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~~L  254 (813)
T TIGR02374       197 ------------RELEKKGLTVLLGTEKDTVEIVGED------DVEKVERLRFKDGSSLEADLVVFAAGIRPRDEL  254 (813)
T ss_pred             ------------HHHHHCCCEEEECCCCCEEEEEECC------CHHHHCEEECCCCCEEEECEEEEECCCCCCHHH
T ss_conf             ------------9998579579861761105764156------401231224238978870379995156663689