Query gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 626
No_of_seqs 205 out of 2102
Neff 6.3
Searched_HMMs 39220
Date Tue May 31 15:31:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780808.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05192 tRNA uridine 5-carbox 100.0 0 0 1832.4 46.2 616 1-619 2-620 (621)
2 COG0445 GidA Flavin-dependent 100.0 0 0 1769.3 36.3 617 2-619 1-620 (621)
3 KOG2311 consensus 100.0 0 0 1531.4 30.9 616 4-623 27-658 (679)
4 TIGR00136 gidA glucose-inhibit 100.0 0 0 1125.9 32.6 611 6-616 1-629 (630)
5 pfam01134 GIDA Glucose inhibit 100.0 0 0 1106.2 24.5 391 7-397 1-391 (391)
6 PRK05335 tRNA (uracil-5-)-meth 100.0 0 0 878.9 22.4 364 1-417 1-388 (434)
7 TIGR00137 gid gid protein; Int 100.0 0 0 833.3 13.8 395 7-475 2-430 (444)
8 COG1206 Gid NAD(FAD)-utilizing 100.0 0 0 771.4 16.3 365 1-418 1-391 (439)
9 PRK09078 sdhA succinate dehydr 99.4 6.8E-12 1.7E-16 104.0 12.5 37 1-37 8-44 (598)
10 PRK07803 sdhA succinate dehydr 99.3 7.7E-12 2E-16 103.6 9.2 155 3-159 6-214 (631)
11 PRK08626 fumarate reductase fl 99.3 4E-11 1E-15 98.5 12.4 61 335-398 364-434 (657)
12 PRK06452 sdhA succinate dehydr 99.3 7.7E-12 2E-16 103.6 8.4 153 3-158 3-198 (566)
13 COG1053 SdhA Succinate dehydro 99.3 1.1E-10 2.7E-15 95.5 13.1 157 1-158 2-202 (562)
14 PRK08205 sdhA succinate dehydr 99.3 2.3E-10 5.8E-15 93.2 14.7 36 1-37 1-36 (583)
15 PRK08958 sdhA succinate dehydr 99.3 6.9E-11 1.8E-15 96.9 11.6 35 3-37 5-39 (588)
16 PRK09231 fumarate reductase fl 99.3 1.1E-10 2.9E-15 95.3 12.8 150 5-159 4-197 (582)
17 PRK07057 sdhA succinate dehydr 99.3 6.1E-12 1.6E-16 104.3 6.2 37 1-37 8-44 (591)
18 PRK09077 L-aspartate oxidase; 99.3 4.3E-10 1.1E-14 91.2 15.4 150 3-158 6-207 (535)
19 COG2081 Predicted flavoprotein 99.3 2.6E-11 6.7E-16 99.9 9.0 339 4-393 2-407 (408)
20 PRK06854 adenylylsulfate reduc 99.3 3.3E-09 8.5E-14 84.9 19.8 155 1-157 2-197 (610)
21 PRK08641 sdhA succinate dehydr 99.3 2.4E-10 6.1E-15 93.0 13.6 35 4-38 2-36 (589)
22 PTZ00139 succinate dehydrogena 99.3 1.6E-10 4.2E-15 94.2 12.3 153 2-159 31-235 (622)
23 PRK08275 putative oxidoreducta 99.2 1E-10 2.6E-15 95.6 10.1 150 5-157 9-199 (554)
24 pfam03486 HI0933_like HI0933-l 99.2 2.7E-10 6.8E-15 92.7 10.9 142 6-157 1-163 (405)
25 PRK06069 sdhA succinate dehydr 99.2 4.7E-10 1.2E-14 90.9 12.0 156 2-158 2-201 (582)
26 PRK05945 sdhA succinate dehydr 99.2 2.2E-10 5.6E-15 93.3 8.8 154 5-159 3-198 (575)
27 PRK06263 sdhA succinate dehydr 99.1 3.8E-10 9.7E-15 91.6 8.6 150 5-158 7-197 (539)
28 PRK10157 putative oxidoreducta 99.1 2.6E-11 6.5E-16 99.9 2.0 141 1-156 1-162 (428)
29 PRK05976 dihydrolipoamide dehy 99.1 3.1E-10 8E-15 92.2 7.5 136 2-157 1-149 (464)
30 PRK06481 fumarate reductase fl 99.1 2.8E-09 7.2E-14 85.4 11.3 159 3-162 58-254 (506)
31 PRK07573 sdhA succinate dehydr 99.1 6.4E-09 1.6E-13 82.9 12.8 149 4-158 32-230 (638)
32 PRK07395 L-aspartate oxidase; 99.1 3.3E-09 8.5E-14 84.9 11.1 148 2-158 7-198 (556)
33 PRK06292 dihydrolipoamide dehy 99.0 4.8E-09 1.2E-13 83.8 10.4 138 3-156 1-140 (460)
34 PTZ00052 thioredoxin reductase 99.0 6.9E-09 1.8E-13 82.6 11.0 140 2-157 38-195 (541)
35 PRK06370 mercuric reductase; V 99.0 6.8E-10 1.7E-14 89.8 5.8 136 3-157 2-143 (459)
36 PRK06116 glutathione reductase 99.0 1.9E-09 4.8E-14 86.7 8.1 136 2-157 1-142 (450)
37 PRK10015 hypothetical protein; 99.0 9.8E-11 2.5E-15 95.8 1.4 145 1-156 1-162 (429)
38 PRK06327 dihydrolipoamide dehy 99.0 2E-09 5.1E-14 86.5 8.1 140 2-157 1-156 (475)
39 PRK07818 dihydrolipoamide dehy 99.0 3E-09 7.8E-14 85.2 8.8 137 2-157 1-146 (467)
40 PRK06175 L-aspartate oxidase; 99.0 5.6E-09 1.4E-13 83.3 9.7 151 2-159 1-190 (433)
41 PRK10262 thioredoxin reductase 99.0 3.6E-10 9.2E-15 91.8 3.3 112 3-156 4-115 (321)
42 TIGR03143 AhpF_homolog putativ 98.9 2.8E-09 7.2E-14 85.4 7.2 115 2-159 1-115 (555)
43 PRK05249 soluble pyridine nucl 98.9 7.1E-09 1.8E-13 82.6 9.0 142 1-156 1-148 (465)
44 PRK08010 pyridine nucleotide-d 98.9 1.2E-08 3E-13 81.1 10.1 124 3-156 1-129 (441)
45 PRK08020 ubiF 2-octaprenyl-3-m 98.9 1.7E-08 4.3E-13 79.9 10.7 152 1-157 1-168 (391)
46 PRK07843 3-ketosteroid-delta-1 98.9 3.2E-08 8.3E-13 77.9 11.8 39 1-39 1-39 (560)
47 COG0492 TrxB Thioredoxin reduc 98.9 3.1E-09 7.9E-14 85.1 6.5 113 3-158 1-115 (305)
48 PRK06416 dihydrolipoamide dehy 98.9 1.1E-08 2.9E-13 81.2 9.0 140 4-156 3-144 (462)
49 TIGR03140 AhpF alkyl hydropero 98.9 7.2E-09 1.8E-13 82.6 7.7 113 4-159 211-324 (515)
50 PRK06115 dihydrolipoamide dehy 98.9 5.7E-09 1.4E-13 83.3 7.2 138 3-157 1-147 (466)
51 PRK06467 dihydrolipoamide dehy 98.9 9.5E-09 2.4E-13 81.7 8.2 137 2-156 1-146 (472)
52 PRK07494 2-octaprenyl-6-methox 98.9 1.2E-08 3E-13 81.1 8.5 147 1-156 1-163 (386)
53 PRK13748 putative mercuric red 98.8 1.4E-08 3.6E-13 80.4 7.9 136 3-157 96-243 (561)
54 TIGR01812 sdhA_frdA_Gneg succi 98.8 3.5E-09 9E-14 84.7 4.7 389 7-485 1-537 (636)
55 PRK08274 tricarballylate dehyd 98.8 5.3E-08 1.3E-12 76.4 10.4 155 3-161 2-190 (456)
56 PRK12842 putative succinate de 98.8 9.4E-08 2.4E-12 74.6 11.3 38 1-38 1-38 (567)
57 PRK08849 2-octaprenyl-3-methyl 98.8 9.4E-08 2.4E-12 74.6 11.0 151 4-157 2-166 (384)
58 PRK07251 pyridine nucleotide-d 98.8 7.2E-08 1.8E-12 75.4 10.2 123 4-157 2-129 (438)
59 PRK07512 L-aspartate oxidase; 98.8 9.3E-08 2.4E-12 74.6 10.6 150 4-158 8-197 (507)
60 PRK12844 3-ketosteroid-delta-1 98.8 1.4E-07 3.5E-12 73.5 11.5 37 3-39 4-40 (552)
61 PRK11259 solA N-methyltryptoph 98.8 2.9E-08 7.5E-13 78.2 8.1 155 4-161 2-207 (377)
62 PRK12839 hypothetical protein; 98.8 1.1E-07 2.8E-12 74.1 10.9 37 2-38 6-42 (574)
63 pfam01266 DAO FAD dependent ox 98.8 2.7E-08 6.8E-13 78.5 7.1 149 7-162 1-206 (309)
64 COG0644 FixC Dehydrogenases (f 98.8 3E-08 7.6E-13 78.1 7.2 144 4-157 2-151 (396)
65 PRK07121 hypothetical protein; 98.8 3E-07 7.6E-12 71.0 12.3 159 3-162 18-243 (491)
66 COG0654 UbiH 2-polyprenyl-6-me 98.7 1.3E-07 3.4E-12 73.5 10.2 145 4-157 1-161 (387)
67 PRK07845 flavoprotein disulfid 98.7 5.7E-08 1.4E-12 76.2 8.2 137 6-156 2-150 (467)
68 PRK08401 L-aspartate oxidase; 98.7 1E-08 2.6E-13 81.4 4.4 144 6-159 2-176 (464)
69 PRK12843 putative FAD-binding 98.7 2.2E-07 5.6E-12 72.0 11.0 35 4-38 13-47 (576)
70 KOG1298 consensus 98.7 9.6E-09 2.5E-13 81.6 3.9 150 3-159 43-209 (509)
71 COG0029 NadB Aspartate oxidase 98.7 1.9E-07 4.9E-12 72.4 10.3 169 2-212 1-216 (518)
72 PRK06134 putative FAD-binding 98.7 2.2E-07 5.6E-12 72.0 10.6 37 3-39 8-44 (579)
73 pfam00890 FAD_binding_2 FAD bi 98.7 2.2E-07 5.6E-12 72.0 10.6 154 7-161 1-206 (401)
74 TIGR02032 GG-red-SF geranylger 98.7 4E-08 1E-12 77.3 6.6 146 6-158 1-172 (343)
75 TIGR01816 sdhA_forward succina 98.7 3.7E-08 9.5E-13 77.5 6.2 397 4-494 1-512 (615)
76 PRK07608 hypothetical protein; 98.7 2E-07 5.2E-12 72.2 9.9 151 2-156 2-166 (389)
77 PRK12834 putative FAD-binding 98.7 4.9E-07 1.3E-11 69.5 11.7 156 5-163 2-230 (549)
78 PRK07045 putative monooxygenas 98.7 1.8E-08 4.5E-13 79.8 4.2 155 1-158 1-165 (388)
79 PRK09126 hypothetical protein; 98.7 1.4E-07 3.5E-12 73.4 8.8 150 1-157 1-166 (392)
80 PRK06185 hypothetical protein; 98.7 1.6E-08 4.1E-13 80.0 3.6 146 1-156 2-167 (409)
81 PRK12837 3-ketosteroid-delta-1 98.7 5.3E-07 1.4E-11 69.3 11.2 157 3-162 7-241 (515)
82 pfam07992 Pyr_redox_2 Pyridine 98.7 1.8E-07 4.7E-12 72.5 8.7 104 7-156 1-105 (277)
83 PRK08071 L-aspartate oxidase; 98.7 2.1E-07 5.4E-12 72.1 8.9 148 4-159 2-191 (510)
84 KOG2820 consensus 98.6 7E-08 1.8E-12 75.5 6.4 154 2-163 4-217 (399)
85 PRK11101 glpA sn-glycerol-3-ph 98.6 1.5E-07 3.8E-12 73.2 8.1 159 1-161 1-213 (545)
86 PRK08850 2-octaprenyl-6-methox 98.6 3.7E-07 9.3E-12 70.4 9.9 149 2-157 1-167 (405)
87 COG1148 HdrA Heterodisulfide r 98.6 4.1E-08 1.1E-12 77.1 4.9 110 270-394 428-545 (622)
88 PRK12835 3-ketosteroid-delta-1 98.6 6.6E-07 1.7E-11 68.6 11.0 37 3-39 9-45 (584)
89 PRK01747 mnmC 5-methylaminomet 98.6 3.2E-07 8.2E-12 70.8 9.2 148 6-158 257-458 (660)
90 TIGR01790 carotene-cycl lycope 98.6 1.2E-07 3.1E-12 73.8 7.0 169 7-193 1-180 (419)
91 PRK05732 2-octaprenyl-6-methox 98.6 5.5E-07 1.4E-11 69.1 9.5 148 3-156 1-167 (395)
92 COG1249 Lpd Pyruvate/2-oxoglut 98.6 2.1E-07 5.5E-12 72.1 7.4 143 2-157 1-146 (454)
93 PRK08013 hypothetical protein; 98.6 9.7E-07 2.5E-11 67.4 10.7 153 4-157 2-167 (400)
94 PRK07364 2-octaprenyl-6-methox 98.6 3.7E-07 9.5E-12 70.4 8.3 151 1-156 13-178 (413)
95 PRK08774 consensus 98.6 3.4E-07 8.6E-12 70.6 7.8 147 2-156 1-168 (402)
96 PRK07804 L-aspartate oxidase; 98.5 9.3E-08 2.4E-12 74.6 4.7 150 4-157 14-201 (533)
97 PRK11445 putative oxidoreducta 98.5 5.3E-07 1.4E-11 69.3 8.5 144 5-157 1-156 (348)
98 PRK07846 mycothione/glutathion 98.5 7.2E-07 1.8E-11 68.3 8.6 129 5-157 1-141 (453)
99 TIGR03452 mycothione_red mycot 98.5 3.4E-07 8.7E-12 70.6 6.2 129 4-156 1-141 (452)
100 PRK12845 3-ketosteroid-delta-1 98.5 2.2E-06 5.7E-11 64.8 10.3 35 3-38 14-48 (566)
101 PRK11749 putative oxidoreducta 98.5 3.1E-06 8E-11 63.8 10.9 45 352-397 413-458 (460)
102 PTZ00306 NADH-dependent fumara 98.5 6.1E-06 1.6E-10 61.7 11.9 58 340-397 828-906 (1167)
103 PRK08163 salicylate hydroxylas 98.4 4E-06 1E-10 63.1 9.9 148 2-157 1-165 (396)
104 TIGR00551 nadB L-aspartate oxi 98.4 6.9E-06 1.8E-10 61.3 10.5 362 5-449 2-466 (546)
105 PRK08773 2-octaprenyl-3-methyl 98.4 8.7E-06 2.2E-10 60.6 10.9 150 1-157 1-168 (392)
106 COG0665 DadA Glycine/D-amino a 98.4 3.1E-06 8E-11 63.8 8.5 157 2-162 1-216 (387)
107 PRK11728 hypothetical protein; 98.4 4.9E-06 1.2E-10 62.4 9.4 152 5-158 2-205 (400)
108 PRK12771 putative glutamate sy 98.3 5.5E-06 1.4E-10 62.1 9.5 43 358-400 403-446 (560)
109 PRK13800 putative oxidoreducta 98.3 8.2E-07 2.1E-11 67.9 5.3 146 4-157 12-204 (894)
110 TIGR01377 soxA_mon sarcosine o 98.3 5.1E-07 1.3E-11 69.4 4.1 146 6-163 1-213 (401)
111 pfam01946 Thi4 Thi4 family. Th 98.3 1.9E-06 4.9E-11 65.3 6.7 132 5-156 17-162 (229)
112 PRK00711 D-amino acid dehydrog 98.3 1E-06 2.5E-11 67.3 5.2 63 98-162 198-261 (416)
113 COG0578 GlpA Glycerol-3-phosph 98.3 3.9E-06 1E-10 63.1 8.2 155 1-163 8-230 (532)
114 TIGR01350 lipoamide_DH dihydro 98.3 9.5E-07 2.4E-11 67.5 4.9 130 5-157 1-146 (481)
115 PRK04176 ribulose-1,5-biphosph 98.3 6.5E-06 1.6E-10 61.6 9.1 132 5-156 25-171 (257)
116 PRK12409 D-amino acid dehydrog 98.3 5.9E-06 1.5E-10 61.8 8.8 32 7-38 3-34 (410)
117 PRK06617 2-octaprenyl-6-methox 98.3 5.7E-06 1.5E-10 61.9 8.6 146 6-156 2-158 (374)
118 TIGR03169 Nterm_to_SelD pyridi 98.3 4.8E-07 1.2E-11 69.6 3.0 104 7-158 1-107 (364)
119 TIGR01292 TRX_reduct thioredox 98.3 4.3E-06 1.1E-10 62.8 7.3 300 6-393 1-321 (321)
120 PRK06912 acoL dihydrolipoamide 98.3 5E-06 1.3E-10 62.3 7.7 135 7-157 2-143 (458)
121 COG2509 Uncharacterized FAD-de 98.2 1.6E-05 4E-10 58.8 9.8 350 1-393 14-483 (486)
122 PRK05714 2-octaprenyl-3-methyl 98.2 6.5E-06 1.7E-10 61.5 7.7 147 5-156 2-166 (405)
123 PRK06834 hypothetical protein; 98.2 3.7E-06 9.4E-11 63.3 6.5 139 4-156 2-154 (488)
124 TIGR03329 Phn_aa_oxid putative 98.2 2.1E-05 5.2E-10 58.0 9.6 112 318-445 323-437 (460)
125 PRK06183 mhpA 3-(3-hydroxyphen 98.2 7E-06 1.8E-10 61.3 7.1 147 3-156 10-174 (554)
126 PRK04965 nitric oxide reductas 98.2 8.8E-06 2.2E-10 60.6 7.5 105 2-156 1-109 (378)
127 COG1635 THI4 Ribulose 1,5-bisp 98.2 6.6E-06 1.7E-10 61.5 6.9 133 5-156 30-176 (262)
128 PRK07236 hypothetical protein; 98.2 8.5E-06 2.2E-10 60.7 7.3 144 1-157 4-153 (386)
129 PRK08948 consensus 98.2 3.7E-05 9.5E-10 56.1 10.5 145 6-156 1-164 (392)
130 PRK06126 hypothetical protein; 98.2 2.4E-05 6.2E-10 57.5 9.4 149 1-156 2-186 (545)
131 COG2072 TrkA Predicted flavopr 98.1 1.1E-05 2.7E-10 60.0 7.2 346 1-379 4-396 (443)
132 COG0579 Predicted dehydrogenas 98.1 1.5E-05 3.9E-10 58.9 8.0 159 3-161 1-214 (429)
133 PTZ00153 lipoamide dehydrogena 98.1 1.2E-05 3.2E-10 59.6 7.2 142 4-156 122-292 (673)
134 PRK02106 choline dehydrogenase 98.1 4.3E-06 1.1E-10 62.8 4.5 37 1-37 1-38 (555)
135 PRK05329 anaerobic glycerol-3- 98.1 4.5E-06 1.1E-10 62.7 4.5 35 5-39 2-36 (425)
136 COG1233 Phytoene dehydrogenase 98.1 4.8E-06 1.2E-10 62.4 4.5 35 4-38 2-36 (487)
137 TIGR03378 glycerol3P_GlpB glyc 98.1 5.1E-06 1.3E-10 62.3 4.4 33 6-38 1-33 (419)
138 PRK09754 phenylpropionate diox 98.0 3.7E-05 9.4E-10 56.2 8.0 107 1-157 1-111 (400)
139 PRK06475 salicylate hydroxylas 98.0 1.2E-05 2.9E-10 59.8 5.4 142 5-156 2-165 (400)
140 PRK12266 glpD glycerol-3-phosp 98.0 9.8E-06 2.5E-10 60.3 4.9 37 2-38 3-39 (503)
141 pfam05834 Lycopene_cycl Lycope 98.0 5.9E-06 1.5E-10 61.8 3.7 136 7-157 1-141 (374)
142 PRK13369 glycerol-3-phosphate 98.0 1.1E-05 2.9E-10 59.8 4.8 36 3-38 4-39 (503)
143 TIGR03364 HpnW_proposed FAD de 98.0 9.2E-06 2.3E-10 60.5 4.2 33 6-38 1-33 (365)
144 PRK07333 2-octaprenyl-6-methox 97.9 9E-05 2.3E-09 53.4 8.9 145 6-157 2-166 (403)
145 PRK05675 sdhA succinate dehydr 97.9 0.00033 8.4E-09 49.4 10.8 41 358-398 360-410 (570)
146 PRK12770 putative glutamate sy 97.9 3.7E-05 9.5E-10 56.1 6.0 73 302-396 275-350 (350)
147 TIGR03385 CoA_CoA_reduc CoA-di 97.9 0.00013 3.2E-09 52.4 8.7 95 7-159 139-234 (427)
148 COG3075 GlpB Anaerobic glycero 97.9 2.6E-05 6.6E-10 57.3 5.1 58 5-67 2-69 (421)
149 pfam01494 FAD_binding_3 FAD bi 97.9 1.4E-05 3.6E-10 59.1 3.7 146 5-157 1-161 (349)
150 KOG1335 consensus 97.9 6.9E-05 1.8E-09 54.3 7.2 133 4-156 38-183 (506)
151 PRK07208 hypothetical protein; 97.8 2.5E-05 6.4E-10 57.3 4.8 49 1-52 1-49 (474)
152 TIGR01988 Ubi-OHases Ubiquinon 97.8 9.5E-05 2.4E-09 53.3 7.1 151 7-159 1-191 (445)
153 PRK06847 hypothetical protein; 97.8 5.6E-05 1.4E-09 54.9 5.7 139 8-158 7-163 (375)
154 PRK09564 coenzyme A disulfide 97.8 0.00023 5.8E-09 50.6 8.7 105 8-156 3-113 (443)
155 TIGR02352 thiamin_ThiO glycine 97.8 0.00026 6.6E-09 50.2 8.9 150 8-159 1-209 (357)
156 TIGR02053 MerA mercuric reduct 97.8 0.00034 8.7E-09 49.3 9.4 135 6-156 1-147 (494)
157 COG1252 Ndh NADH dehydrogenase 97.8 0.0001 2.6E-09 53.0 6.8 305 1-397 1-335 (405)
158 pfam04820 Trp_halogenase Trypt 97.7 0.00012 3E-09 52.6 7.0 58 97-155 153-211 (457)
159 PRK06996 hypothetical protein; 97.7 8.9E-05 2.3E-09 53.4 6.2 146 1-156 7-172 (397)
160 TIGR03467 HpnE squalene-associ 97.7 4.5E-05 1.1E-09 55.6 4.4 31 8-38 1-31 (430)
161 TIGR03219 salicylate_mono sali 97.7 0.00028 7.1E-09 50.0 8.3 137 7-158 2-159 (414)
162 PRK07538 hypothetical protein; 97.7 0.00031 7.8E-09 49.6 8.4 140 7-156 2-163 (413)
163 TIGR01813 flavo_cyto_c flavocy 97.7 0.00016 4.1E-09 51.6 6.9 152 7-163 1-214 (487)
164 PRK05868 hypothetical protein; 97.7 0.00011 2.8E-09 52.8 6.0 137 8-156 4-158 (372)
165 PRK08132 hypothetical protein; 97.7 0.0004 1E-08 48.8 8.8 142 4-156 22-183 (549)
166 KOG0029 consensus 97.7 7.6E-05 1.9E-09 54.0 4.9 35 4-38 14-48 (501)
167 PRK06184 hypothetical protein; 97.7 8.7E-05 2.2E-09 53.5 5.1 40 1-40 1-41 (503)
168 TIGR02023 BchP-ChlP geranylger 97.6 5.5E-05 1.4E-09 55.0 3.8 115 6-132 1-126 (408)
169 KOG2614 consensus 97.6 0.00072 1.8E-08 47.0 9.4 141 7-157 4-162 (420)
170 PRK13512 coenzyme A disulfide 97.6 0.00038 9.7E-09 49.0 7.6 107 8-156 4-115 (438)
171 COG3634 AhpF Alkyl hydroperoxi 97.6 0.0001 2.6E-09 53.0 4.7 109 4-159 210-326 (520)
172 PRK11883 protoporphyrinogen ox 97.6 0.00011 2.9E-09 52.7 4.7 31 8-38 3-35 (452)
173 TIGR01984 UbiH 2-polyprenyl-6- 97.6 0.00027 6.9E-09 50.0 6.5 146 7-156 1-192 (425)
174 PRK07233 hypothetical protein; 97.5 0.00011 2.9E-09 52.7 4.5 31 8-38 2-32 (430)
175 PRK07588 hypothetical protein; 97.5 0.00017 4.3E-09 51.5 5.3 136 8-157 3-157 (391)
176 COG2303 BetA Choline dehydroge 97.5 0.00014 3.5E-09 52.1 4.6 57 109-165 210-273 (542)
177 PRK12810 gltD glutamate syntha 97.5 0.00026 6.6E-09 50.1 6.0 45 354-399 427-472 (472)
178 PRK06116 glutathione reductase 97.5 0.00072 1.8E-08 47.0 8.1 75 351-426 287-370 (450)
179 PRK05976 dihydrolipoamide dehy 97.5 0.00072 1.8E-08 47.0 8.1 88 328-426 280-374 (464)
180 PRK12831 putative oxidoreducta 97.5 0.00027 6.8E-09 50.1 5.8 75 304-396 388-463 (464)
181 PRK06753 hypothetical protein; 97.5 3.3E-05 8.3E-10 56.6 1.2 139 8-157 3-151 (373)
182 PRK09564 coenzyme A disulfide 97.5 0.0007 1.8E-08 47.1 8.0 96 7-159 151-247 (443)
183 PRK08244 hypothetical protein; 97.5 0.00018 4.7E-09 51.2 4.7 36 5-40 2-37 (494)
184 COG0446 HcaD Uncharacterized N 97.5 0.00089 2.3E-08 46.3 8.1 95 7-156 138-235 (415)
185 PRK07845 flavoprotein disulfid 97.4 0.00099 2.5E-08 46.0 8.2 39 352-391 298-337 (467)
186 KOG2404 consensus 97.4 0.00076 1.9E-08 46.9 7.6 141 7-159 11-207 (477)
187 PRK05249 soluble pyridine nucl 97.4 0.00087 2.2E-08 46.4 7.9 39 351-390 295-334 (465)
188 PRK08294 phenol 2-monooxygenas 97.4 0.00018 4.7E-09 51.2 4.3 38 4-41 31-69 (634)
189 PRK13984 putative oxidoreducta 97.4 0.00047 1.2E-08 48.3 5.8 56 8-64 286-342 (604)
190 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00025 6.3E-09 50.3 4.3 34 5-38 1-35 (390)
191 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00025 6.3E-09 50.3 4.2 32 7-38 3-34 (499)
192 PRK12814 putative NADPH-depend 97.3 0.00068 1.7E-08 47.2 6.1 120 303-448 428-549 (652)
193 PRK09754 phenylpropionate diox 97.3 0.001 2.6E-08 45.9 6.9 101 7-163 146-246 (400)
194 PRK07846 mycothione/glutathion 97.3 0.0018 4.7E-08 44.1 8.1 69 352-421 287-364 (453)
195 TIGR01316 gltA glutamate synth 97.3 0.0007 1.8E-08 47.1 5.7 58 6-66 143-203 (462)
196 PRK06912 acoL dihydrolipoamide 97.3 0.0021 5.5E-08 43.7 8.1 69 351-420 289-364 (458)
197 PRK07190 hypothetical protein; 97.3 0.00055 1.4E-08 47.8 5.1 41 1-41 1-41 (480)
198 TIGR02730 carot_isom carotene 97.3 0.00031 7.9E-09 49.6 3.8 33 6-38 1-33 (506)
199 TIGR03315 Se_ygfK putative sel 97.2 0.0011 2.8E-08 45.7 6.2 56 8-64 540-596 (1012)
200 TIGR03452 mycothione_red mycot 97.2 0.0022 5.6E-08 43.5 7.8 70 351-421 287-365 (452)
201 PRK09853 putative selenate red 97.2 0.0012 3.1E-08 45.4 6.2 56 8-64 553-609 (1032)
202 PRK12809 putative oxidoreducta 97.2 0.0013 3.3E-08 45.2 6.1 57 7-64 312-369 (639)
203 PRK12778 putative bifunctional 97.1 0.0013 3.4E-08 45.1 5.9 74 304-396 686-760 (760)
204 PRK12769 putative oxidoreducta 97.1 0.0013 3.3E-08 45.2 5.8 57 8-65 330-387 (654)
205 PRK06292 dihydrolipoamide dehy 97.1 0.0033 8.5E-08 42.3 7.6 70 351-421 290-367 (460)
206 TIGR01811 sdhA_Bsu succinate d 97.1 0.00057 1.4E-08 47.8 3.5 139 8-158 1-199 (620)
207 TIGR02374 nitri_red_nirB nitri 97.0 0.0034 8.7E-08 42.2 7.3 104 8-162 150-254 (813)
208 COG3573 Predicted oxidoreducta 97.0 0.0009 2.3E-08 46.3 4.3 187 3-214 3-268 (552)
209 COG4529 Uncharacterized protei 97.0 0.0053 1.4E-07 40.8 8.2 135 6-156 2-162 (474)
210 pfam00070 Pyr_redox Pyridine n 97.0 0.00097 2.5E-08 46.1 4.0 32 8-39 2-33 (82)
211 TIGR00292 TIGR00292 thiazole b 96.9 0.00095 2.4E-08 46.2 3.8 112 5-143 21-151 (283)
212 KOG0042 consensus 96.9 0.00037 9.3E-09 49.1 1.4 35 3-37 65-99 (680)
213 TIGR01372 soxA sarcosine oxida 96.9 0.0013 3.4E-08 45.1 4.0 152 2-195 173-332 (1026)
214 TIGR02734 crtI_fam phytoene de 96.9 0.0012 3.2E-08 45.3 3.8 53 104-156 230-291 (526)
215 PRK08243 4-hydroxybenzoate 3-m 96.8 0.0021 5.3E-08 43.7 4.8 33 6-38 3-35 (392)
216 TIGR02485 CobZ_N-term precorri 96.8 0.0013 3.2E-08 45.3 3.6 369 6-395 2-467 (467)
217 COG1232 HemY Protoporphyrinoge 96.8 0.0031 7.8E-08 42.5 5.5 44 8-52 3-48 (444)
218 COG1231 Monoamine oxidase [Ami 96.8 0.0019 4.8E-08 44.0 4.4 35 4-38 6-40 (450)
219 COG1249 Lpd Pyruvate/2-oxoglut 96.8 0.015 3.8E-07 37.6 8.9 30 8-37 176-205 (454)
220 KOG4716 consensus 96.8 0.023 5.8E-07 36.4 9.6 326 3-402 17-371 (503)
221 COG3349 Uncharacterized conser 96.7 0.0021 5.2E-08 43.8 4.2 31 8-38 3-33 (485)
222 TIGR02028 ChlP geranylgeranyl 96.7 0.0014 3.4E-08 45.1 3.3 34 8-41 3-36 (401)
223 KOG1399 consensus 96.6 0.0097 2.5E-07 39.0 7.1 137 1-158 4-153 (448)
224 COG0562 Glf UDP-galactopyranos 96.6 0.003 7.6E-08 42.6 4.4 34 5-38 1-34 (374)
225 COG1251 NirB NAD(P)H-nitrite r 96.6 0.0088 2.2E-07 39.3 6.7 31 8-38 148-178 (793)
226 PTZ00318 NADH dehydrogenase; P 96.5 0.0087 2.2E-07 39.3 6.3 115 1-159 8-132 (514)
227 TIGR01421 gluta_reduc_1 glutat 96.5 0.0032 8.1E-08 42.4 4.0 135 4-157 1-153 (475)
228 KOG2852 consensus 96.5 0.0059 1.5E-07 40.5 5.0 157 6-163 11-213 (380)
229 PRK12779 putative bifunctional 96.4 0.0093 2.4E-07 39.1 5.8 58 7-65 308-366 (944)
230 TIGR03140 AhpF alkyl hydropero 96.4 0.022 5.5E-07 36.5 7.6 38 358-395 475-514 (515)
231 PRK12416 protoporphyrinogen ox 96.4 0.0059 1.5E-07 40.5 4.6 30 8-37 4-39 (466)
232 PRK12775 putative trifunctiona 96.4 0.011 2.8E-07 38.7 5.9 307 7-401 434-761 (993)
233 PRK07530 3-hydroxybutyryl-CoA 96.3 0.01 2.5E-07 38.9 5.3 39 1-41 1-40 (292)
234 PRK09260 3-hydroxybutyryl-CoA 96.2 0.01 2.6E-07 38.9 5.1 39 1-42 1-39 (289)
235 PRK07251 pyridine nucleotide-d 96.2 0.0074 1.9E-07 39.8 4.2 39 351-390 275-314 (438)
236 KOG4254 consensus 96.1 0.007 1.8E-07 40.0 3.8 56 104-159 267-322 (561)
237 PRK06370 mercuric reductase; V 96.1 0.008 2E-07 39.6 4.1 69 351-420 292-368 (459)
238 TIGR02061 aprA adenylylsulfate 96.1 0.0051 1.3E-07 41.0 2.9 366 7-402 1-488 (651)
239 PTZ00052 thioredoxin reductase 96.0 0.053 1.4E-06 33.7 8.0 38 353-390 342-381 (541)
240 KOG2844 consensus 96.0 0.008 2E-07 39.6 3.8 165 5-171 39-256 (856)
241 PRK08293 3-hydroxybutyryl-CoA 96.0 0.016 4.1E-07 37.4 5.2 39 1-41 1-39 (288)
242 TIGR03143 AhpF_homolog putativ 96.0 0.011 2.7E-07 38.7 4.2 42 353-395 267-310 (555)
243 KOG0405 consensus 96.0 0.035 9E-07 35.0 6.9 138 3-156 18-163 (478)
244 PRK07660 consensus 95.9 0.017 4.3E-07 37.3 5.2 40 1-42 1-40 (283)
245 PRK06416 dihydrolipoamide dehy 95.9 0.013 3.2E-07 38.2 4.4 39 351-390 293-332 (462)
246 PRK08010 pyridine nucleotide-d 95.9 0.011 2.9E-07 38.5 4.2 38 352-390 277-315 (441)
247 PRK05808 3-hydroxybutyryl-CoA 95.9 0.019 4.9E-07 36.9 5.2 39 1-41 1-39 (282)
248 pfam01262 AlaDh_PNT_C Alanine 95.9 0.012 3.1E-07 38.3 4.1 39 6-44 21-59 (150)
249 COG0492 TrxB Thioredoxin reduc 95.9 0.039 1E-06 34.7 6.7 42 356-397 261-304 (305)
250 PRK06467 dihydrolipoamide dehy 95.8 0.012 3.1E-07 38.3 4.1 69 351-420 296-371 (472)
251 TIGR01317 GOGAT_sm_gam glutama 95.8 0.027 6.8E-07 35.9 5.8 59 7-67 153-214 (517)
252 TIGR01350 lipoamide_DH dihydro 95.8 0.079 2E-06 32.5 8.2 96 8-158 181-283 (481)
253 COG0686 Ald Alanine dehydrogen 95.8 0.01 2.6E-07 38.8 3.5 40 6-45 169-208 (371)
254 PRK07818 dihydrolipoamide dehy 95.8 0.015 3.8E-07 37.7 4.3 69 351-420 296-373 (467)
255 pfam00996 GDI GDP dissociation 95.7 0.016 4E-07 37.5 4.3 37 2-38 1-37 (439)
256 KOG1238 consensus 95.7 0.014 3.5E-07 37.9 3.9 33 3-35 55-88 (623)
257 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.026 6.5E-07 36.0 5.3 40 1-42 1-40 (291)
258 PRK06115 dihydrolipoamide dehy 95.7 0.016 4.2E-07 37.4 4.2 36 352-388 298-334 (466)
259 TIGR01789 lycopene_cycl lycope 95.6 0.012 3E-07 38.4 3.4 147 7-182 1-169 (392)
260 PRK05294 carB carbamoyl phosph 95.6 0.04 1E-06 34.6 6.0 102 8-120 10-149 (1063)
261 TIGR01438 TGR thioredoxin and 95.6 0.016 4E-07 37.5 3.9 333 4-401 1-364 (513)
262 PRK06327 dihydrolipoamide dehy 95.5 0.022 5.7E-07 36.4 4.3 72 351-426 306-385 (475)
263 COG3380 Predicted NAD/FAD-depe 95.3 0.025 6.3E-07 36.1 4.2 33 7-39 3-35 (331)
264 PRK13512 coenzyme A disulfide 95.3 0.029 7.3E-07 35.6 4.5 92 7-159 150-242 (438)
265 KOG0404 consensus 95.3 0.049 1.3E-06 34.0 5.6 115 5-159 8-125 (322)
266 TIGR01292 TRX_reduct thioredox 95.2 0.11 2.7E-06 31.6 7.1 88 7-155 153-249 (321)
267 TIGR01989 COQ6 Ubiquinone bios 95.2 0.03 7.7E-07 35.5 4.3 35 6-40 1-41 (481)
268 pfam07992 Pyr_redox_2 Pyridine 95.1 0.037 9.4E-07 34.9 4.4 19 352-371 256-274 (277)
269 PTZ00318 NADH dehydrogenase; P 95.1 0.064 1.6E-06 33.2 5.6 51 104-160 236-286 (514)
270 COG3486 IucD Lysine/ornithine 95.0 0.17 4.5E-06 30.1 7.6 132 1-156 1-155 (436)
271 TIGR03169 Nterm_to_SelD pyridi 94.9 0.22 5.7E-06 29.3 8.0 49 351-400 262-317 (364)
272 PRK09117 consensus 94.9 0.05 1.3E-06 33.9 4.7 35 8-42 5-39 (282)
273 pfam00743 FMO-like Flavin-bind 94.8 0.051 1.3E-06 33.9 4.5 135 4-163 2-155 (532)
274 PRK06130 3-hydroxybutyryl-CoA 94.8 0.076 1.9E-06 32.6 5.3 41 1-41 1-41 (310)
275 PRK12815 carB carbamoyl phosph 94.7 0.16 4E-06 30.4 6.9 104 8-122 10-151 (1068)
276 COG0493 GltD NADPH-dependent g 94.7 0.024 6.2E-07 36.2 2.7 38 6-43 124-161 (457)
277 COG1252 Ndh NADH dehydrogenase 94.6 0.13 3.2E-06 31.1 6.1 108 6-174 156-280 (405)
278 PRK13748 putative mercuric red 94.5 0.062 1.6E-06 33.2 4.4 41 350-391 386-427 (561)
279 COG3634 AhpF Alkyl hydroperoxi 94.5 0.033 8.5E-07 35.2 3.0 10 360-369 479-488 (520)
280 pfam02737 3HCDH_N 3-hydroxyacy 94.4 0.077 2E-06 32.6 4.7 35 8-42 2-36 (180)
281 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.4 0.046 1.2E-06 34.2 3.6 43 1-43 1-43 (508)
282 TIGR02732 zeta_caro_desat caro 94.4 0.054 1.4E-06 33.7 3.9 31 8-38 2-32 (474)
283 PRK07819 3-hydroxybutyryl-CoA 94.4 0.081 2.1E-06 32.4 4.8 34 8-41 5-38 (284)
284 KOG1276 consensus 94.4 0.056 1.4E-06 33.6 3.9 35 6-40 12-48 (491)
285 PRK06129 3-hydroxyacyl-CoA deh 94.4 0.089 2.3E-06 32.2 5.0 35 8-42 5-39 (308)
286 TIGR01369 CPSaseII_lrg carbamo 94.3 0.11 2.8E-06 31.5 5.3 110 8-129 9-157 (1089)
287 PRK07531 bifunctional 3-hydrox 94.3 0.086 2.2E-06 32.3 4.7 37 1-40 1-37 (489)
288 PRK12770 putative glutamate sy 94.1 0.088 2.2E-06 32.2 4.4 35 6-40 18-52 (350)
289 PRK09424 pntA NAD(P) transhydr 93.8 0.096 2.4E-06 31.9 4.1 34 7-40 167-200 (510)
290 PRK12831 putative oxidoreducta 93.8 0.11 2.7E-06 31.6 4.3 38 4-43 141-178 (464)
291 PRK04965 nitric oxide reductas 93.8 0.12 3.1E-06 31.1 4.7 97 8-160 144-241 (378)
292 COG2907 Predicted NAD/FAD-bind 93.7 0.086 2.2E-06 32.3 3.7 31 6-37 9-39 (447)
293 PRK11064 wecC UDP-N-acetyl-D-m 93.4 0.17 4.3E-06 30.2 4.8 43 1-45 1-43 (415)
294 PRK08268 3-hydroxybutyryl-CoA 93.3 0.18 4.6E-06 30.0 4.8 35 8-42 6-40 (503)
295 TIGR01424 gluta_reduc_2 glutat 93.2 0.14 3.5E-06 30.8 4.1 34 5-38 2-35 (478)
296 TIGR01318 gltD_gamma_fam gluta 93.1 0.11 2.7E-06 31.6 3.5 33 7-39 145-177 (480)
297 KOG4405 consensus 92.9 0.11 2.8E-06 31.5 3.3 42 4-45 7-51 (547)
298 PRK07066 3-hydroxybutyryl-CoA 92.9 0.23 5.9E-06 29.2 4.9 33 8-40 10-42 (321)
299 TIGR01373 soxB sarcosine oxida 92.8 0.1 2.6E-06 31.7 3.0 88 316-414 313-407 (407)
300 pfam03721 UDPG_MGDP_dh_N UDP-g 92.7 0.19 4.8E-06 29.8 4.3 39 8-46 3-41 (185)
301 KOG2960 consensus 92.6 0.22 5.5E-06 29.4 4.5 118 5-143 76-205 (328)
302 PRK12814 putative NADPH-depend 92.4 0.2 5.1E-06 29.6 4.1 57 8-65 196-253 (652)
303 KOG1439 consensus 92.3 0.11 2.7E-06 31.6 2.6 37 2-38 1-37 (440)
304 PRK08229 2-dehydropantoate 2-r 92.3 0.28 7.1E-06 28.6 4.7 37 1-41 1-37 (341)
305 PRK11730 fadB multifunctional 92.3 0.25 6.4E-06 29.0 4.4 89 385-481 326-421 (715)
306 PRK12778 putative bifunctional 92.1 0.32 8.1E-06 28.2 4.9 28 7-35 100-131 (760)
307 KOG2853 consensus 92.0 0.18 4.5E-06 30.0 3.5 49 4-53 85-137 (509)
308 PRK10262 thioredoxin reductase 92.0 0.18 4.7E-06 29.9 3.5 50 347-397 267-318 (321)
309 KOG0685 consensus 91.9 0.3 7.8E-06 28.4 4.5 32 4-35 20-52 (498)
310 COG1748 LYS9 Saccharopine dehy 91.6 0.35 8.9E-06 27.9 4.6 40 1-44 1-41 (389)
311 PRK12771 putative glutamate sy 91.6 0.35 9E-06 27.9 4.6 55 8-63 140-195 (560)
312 pfam06039 Mqo Malate:quinone o 91.4 0.4 1E-05 27.5 4.7 47 2-49 1-52 (489)
313 TIGR03026 NDP-sugDHase nucleot 91.3 0.37 9.4E-06 27.8 4.4 40 8-47 3-42 (411)
314 KOG3855 consensus 91.2 0.17 4.3E-06 30.2 2.6 57 99-155 150-214 (481)
315 pfam01210 NAD_Gly3P_dh_N NAD-d 91.1 0.37 9.4E-06 27.8 4.3 37 8-44 3-39 (159)
316 COG0458 CarB Carbamoylphosphat 91.1 0.68 1.7E-05 25.9 5.6 31 11-41 12-42 (400)
317 PRK11749 putative oxidoreducta 91.0 0.36 9.3E-06 27.8 4.2 36 8-43 143-178 (460)
318 PRK00094 gpsA NAD(P)H-dependen 90.9 0.42 1.1E-05 27.4 4.4 45 1-49 1-48 (325)
319 PTZ00153 lipoamide dehydrogena 90.8 0.3 7.7E-06 28.4 3.6 39 352-390 457-501 (673)
320 PRK08277 D-mannonate oxidoredu 90.8 1.2 3E-05 24.2 6.6 85 1-120 1-91 (278)
321 PRK05335 tRNA (uracil-5-)-meth 90.5 0.13 3.4E-06 30.9 1.5 58 235-302 188-253 (434)
322 TIGR01176 fum_red_Fp fumarate 90.5 0.4 1E-05 27.5 4.0 421 5-486 3-498 (585)
323 TIGR00518 alaDH alanine dehydr 90.4 0.21 5.4E-06 29.5 2.6 44 4-47 167-213 (372)
324 PRK00141 murD UDP-N-acetylmura 90.2 0.45 1.2E-05 27.1 4.1 36 2-39 16-51 (476)
325 pfam00743 FMO-like Flavin-bind 90.2 0.31 8E-06 28.3 3.3 29 8-36 186-214 (532)
326 KOG1336 consensus 90.2 1.5 3.8E-05 23.4 8.0 30 7-36 76-105 (478)
327 KOG2415 consensus 90.0 0.38 9.7E-06 27.7 3.5 33 4-36 75-113 (621)
328 KOG0399 consensus 89.8 0.48 1.2E-05 26.9 3.9 37 241-277 542-578 (2142)
329 PRK11154 fadJ multifunctional 89.8 0.5 1.3E-05 26.9 4.0 79 394-480 339-417 (706)
330 PRK09496 trkA potassium transp 89.7 0.62 1.6E-05 26.2 4.4 38 8-45 3-40 (455)
331 PRK00066 ldh L-lactate dehydro 89.3 0.67 1.7E-05 25.9 4.4 38 1-38 1-41 (315)
332 PRK00683 murD UDP-N-acetylmura 89.2 0.66 1.7E-05 26.0 4.3 41 1-43 1-41 (418)
333 COG1250 FadB 3-hydroxyacyl-CoA 89.2 0.79 2E-05 25.4 4.7 39 1-41 1-39 (307)
334 cd01487 E1_ThiF_like E1_ThiF_l 89.1 0.63 1.6E-05 26.1 4.1 27 8-34 2-28 (174)
335 KOG2304 consensus 89.0 0.51 1.3E-05 26.8 3.6 41 3-43 9-49 (298)
336 TIGR02053 MerA mercuric reduct 89.0 0.37 9.5E-06 27.7 2.9 95 8-157 184-283 (494)
337 COG2072 TrkA Predicted flavopr 89.0 0.6 1.5E-05 26.3 3.9 33 8-40 178-210 (443)
338 PRK05708 2-dehydropantoate 2-r 88.8 0.83 2.1E-05 25.3 4.5 39 1-42 1-39 (305)
339 PRK12769 putative oxidoreducta 88.4 0.73 1.9E-05 25.7 4.0 38 355-393 613-651 (654)
340 pfam00899 ThiF ThiF family. Th 88.2 0.81 2.1E-05 25.3 4.2 29 8-36 4-33 (134)
341 KOG2665 consensus 87.7 0.55 1.4E-05 26.5 3.1 114 3-123 46-170 (453)
342 PRK13339 malate:quinone oxidor 87.6 1.2 3.1E-05 24.1 4.8 46 3-49 4-54 (497)
343 PRK05690 molybdopterin biosynt 87.5 0.98 2.5E-05 24.7 4.3 35 6-41 33-67 (245)
344 PRK12834 putative FAD-binding 87.5 0.51 1.3E-05 26.7 2.8 10 360-369 503-512 (549)
345 PRK08644 thiamine biosynthesis 87.4 0.99 2.5E-05 24.7 4.2 31 6-36 28-59 (209)
346 pfam07350 DUF1479 Protein of u 87.3 1.5 3.9E-05 23.4 5.2 55 102-163 90-145 (408)
347 pfam02254 TrkA_N TrkA-N domain 87.3 0.93 2.4E-05 24.9 4.0 37 8-45 1-37 (115)
348 PRK06718 precorrin-2 dehydroge 86.9 1.2 3E-05 24.2 4.4 34 3-38 10-43 (202)
349 PTZ00325 malate dehydrogenase; 86.9 1 2.5E-05 24.7 4.0 30 8-37 4-34 (313)
350 PTZ00188 adrenodoxin reductase 86.9 1.1 2.7E-05 24.5 4.1 35 4-38 38-73 (506)
351 PRK02006 murD UDP-N-acetylmura 86.8 1.1 2.9E-05 24.3 4.2 31 8-38 10-40 (501)
352 PRK01438 murD UDP-N-acetylmura 86.8 1 2.6E-05 24.6 4.0 35 3-39 14-48 (481)
353 KOG2755 consensus 86.7 0.64 1.6E-05 26.1 2.9 31 8-38 2-34 (334)
354 PRK06249 2-dehydropantoate 2-r 86.7 1.5 3.9E-05 23.4 4.9 36 1-36 1-36 (313)
355 PRK12475 thiamine/molybdopteri 86.5 1.2 3E-05 24.1 4.2 28 7-34 26-53 (337)
356 cd00757 ThiF_MoeB_HesA_family 86.4 1.3 3.3E-05 23.9 4.4 29 6-34 22-50 (228)
357 PRK01390 murD UDP-N-acetylmura 86.2 1.1 2.8E-05 24.4 3.9 38 4-43 10-47 (457)
358 PRK12748 3-ketoacyl-(acyl-carr 86.2 2.6 6.7E-05 21.7 7.5 94 1-120 3-99 (257)
359 COG0240 GpsA Glycerol-3-phosph 86.1 1.4 3.5E-05 23.7 4.3 45 8-52 4-52 (329)
360 PRK08328 hypothetical protein; 86.1 1.4 3.6E-05 23.6 4.4 30 6-35 28-58 (230)
361 PRK09434 aminoimidazole ribosi 85.8 1.7 4.4E-05 23.0 4.8 32 1-35 1-49 (304)
362 TIGR00137 gid gid protein; Int 85.7 0.5 1.3E-05 26.8 2.0 100 166-276 155-254 (444)
363 PRK07688 thiamine/molybdopteri 85.5 1.4 3.6E-05 23.7 4.2 27 7-33 26-52 (339)
364 PRK08306 dipicolinate synthase 85.4 1.6 4.1E-05 23.2 4.5 32 6-37 3-34 (296)
365 COG0569 TrkA K+ transport syst 85.4 1.6 4.1E-05 23.3 4.4 36 8-43 3-38 (225)
366 PRK05562 precorrin-2 dehydroge 85.1 1.5 3.9E-05 23.4 4.2 47 4-50 23-70 (222)
367 PTZ00117 malate dehydrogenase; 85.0 1.7 4.3E-05 23.1 4.4 32 2-37 1-32 (313)
368 PRK06522 2-dehydropantoate 2-r 85.0 2.1 5.3E-05 22.4 4.8 32 8-39 3-34 (307)
369 PRK10669 putative cation:proto 84.8 1.9 4.8E-05 22.7 4.6 25 17-41 53-81 (558)
370 TIGR00479 rumA 23S rRNA (uraci 84.5 0.77 2E-05 25.5 2.5 39 284-322 208-248 (434)
371 cd01483 E1_enzyme_family Super 84.1 1.6 4.1E-05 23.2 4.0 33 8-41 2-34 (143)
372 cd00755 YgdL_like Family of ac 84.0 1.9 4.9E-05 22.7 4.3 32 6-37 12-44 (231)
373 cd01484 E1-2_like Ubiquitin ac 83.7 2.1 5.4E-05 22.3 4.4 33 8-41 2-34 (234)
374 cd01485 E1-1_like Ubiquitin ac 83.5 2.1 5.3E-05 22.4 4.3 29 6-34 20-48 (198)
375 PRK08223 hypothetical protein; 83.5 2 5.2E-05 22.5 4.2 30 6-35 28-57 (287)
376 TIGR01423 trypano_reduc trypan 83.4 0.39 9.9E-06 27.6 0.6 34 4-37 2-36 (486)
377 cd05293 LDH_1 A subgroup of L- 83.4 1.7 4.4E-05 23.0 3.9 32 8-39 6-39 (312)
378 PRK03806 murD UDP-N-acetylmura 83.3 2 5E-05 22.6 4.1 34 3-38 6-39 (438)
379 PRK03369 murD UDP-N-acetylmura 83.3 1.6 4.2E-05 23.2 3.7 34 8-41 15-48 (487)
380 PRK07878 molybdopterin biosynt 83.2 2 5.2E-05 22.5 4.2 30 6-35 43-72 (392)
381 pfam01488 Shikimate_DH Shikima 83.1 2.7 6.8E-05 21.7 4.8 36 3-40 12-48 (134)
382 TIGR02731 phytoene_desat phyto 82.9 1.6 4.2E-05 23.2 3.6 37 8-45 2-38 (454)
383 TIGR01810 betA choline dehydro 82.8 0.76 1.9E-05 25.6 1.8 99 106-221 204-309 (540)
384 PRK08255 salicylyl-CoA 5-hydro 82.7 1.9 4.8E-05 22.7 3.9 39 8-46 3-45 (770)
385 PRK06719 precorrin-2 dehydroge 82.5 2.4 6.2E-05 22.0 4.3 31 8-38 16-46 (157)
386 PRK07832 short chain dehydroge 82.5 3.1 7.9E-05 21.2 4.9 79 8-120 3-82 (272)
387 cd00650 LDH_MDH_like NAD-depen 82.5 1.9 4.8E-05 22.7 3.8 33 8-40 1-38 (263)
388 PRK08762 molybdopterin biosynt 82.0 2.3 5.9E-05 22.1 4.1 29 6-34 139-167 (379)
389 TIGR02356 adenyl_thiF thiazole 81.8 1.9 4.8E-05 22.7 3.6 28 8-35 24-51 (210)
390 KOG3851 consensus 81.7 1 2.7E-05 24.5 2.2 289 4-399 38-366 (446)
391 PRK07411 hypothetical protein; 81.7 2.5 6.3E-05 21.9 4.1 29 6-34 39-67 (390)
392 PRK02472 murD UDP-N-acetylmura 81.6 2.3 5.8E-05 22.1 3.9 34 3-38 9-42 (450)
393 PRK09288 purT phosphoribosylgl 81.5 2.4 6E-05 22.0 4.0 43 8-50 15-57 (395)
394 PTZ00082 L-lactate dehydrogena 81.4 2.4 6.1E-05 22.0 4.0 37 1-38 4-41 (322)
395 PRK05600 thiamine biosynthesis 81.4 2.6 6.6E-05 21.7 4.2 28 6-33 42-69 (370)
396 PRK12921 2-dehydropantoate 2-r 81.1 2.3 5.9E-05 22.1 3.8 33 8-41 3-35 (306)
397 cd01492 Aos1_SUMO Ubiquitin ac 80.8 2.9 7.4E-05 21.4 4.3 33 5-37 21-54 (197)
398 cd05290 LDH_3 A subgroup of L- 80.7 2.4 6.2E-05 21.9 3.8 31 8-38 2-34 (307)
399 PRK09310 aroDE bifunctional 3- 80.7 2.6 6.7E-05 21.7 4.0 106 300-420 213-328 (477)
400 LOAD_Hrd consensus 80.7 2 5E-05 22.6 3.4 35 574-608 28-62 (77)
401 cd01489 Uba2_SUMO Ubiquitin ac 80.6 3.2 8.2E-05 21.1 4.4 26 8-33 2-27 (312)
402 KOG2403 consensus 80.6 1.9 4.8E-05 22.8 3.2 152 5-159 55-255 (642)
403 PRK06179 short chain dehydroge 80.0 4.1 0.0001 20.4 4.8 42 1-44 1-44 (270)
404 PRK08340 glucose-1-dehydrogena 79.6 2.1 5.3E-05 22.5 3.2 34 8-41 3-37 (259)
405 COG5044 MRS6 RAB proteins gera 79.6 3.4 8.7E-05 20.9 4.3 48 4-61 5-52 (434)
406 PRK06223 malate dehydrogenase; 79.4 2.9 7.4E-05 21.4 3.9 31 8-38 3-35 (312)
407 cd01065 NAD_bind_Shikimate_DH 79.4 4 0.0001 20.4 4.6 37 5-41 19-56 (155)
408 COG0476 ThiF Dinucleotide-util 79.4 2.3 5.9E-05 22.1 3.4 27 7-33 32-58 (254)
409 pfam02558 ApbA Ketopantoate re 79.2 3.1 7.8E-05 21.2 3.9 31 8-38 1-31 (150)
410 PRK05855 short chain dehydroge 79.1 4.8 0.00012 19.8 5.7 56 362-421 310-365 (582)
411 PRK03562 glutathione-regulated 79.0 3.4 8.7E-05 20.9 4.1 25 17-41 51-79 (615)
412 cd05292 LDH_2 A subgroup of L- 78.8 3.1 7.9E-05 21.2 3.8 31 8-38 3-35 (308)
413 PRK05597 molybdopterin biosynt 78.5 3.7 9.4E-05 20.6 4.2 29 7-35 30-58 (355)
414 pfam00056 Ldh_1_N lactate/mala 78.4 3.2 8.1E-05 21.1 3.8 31 8-38 3-36 (142)
415 COG0026 PurK Phosphoribosylami 78.3 3.4 8.8E-05 20.9 4.0 110 8-122 4-122 (375)
416 PRK05472 redox-sensing transcr 77.7 3.7 9.3E-05 20.7 4.0 86 2-114 81-169 (211)
417 pfam00570 HRDC HRDC domain. Th 77.7 2.8 7.2E-05 21.5 3.4 33 575-607 26-58 (68)
418 PRK04308 murD UDP-N-acetylmura 77.3 3.8 9.7E-05 20.6 4.0 34 3-38 5-38 (445)
419 PRK01710 murD UDP-N-acetylmura 77.0 3.9 1E-04 20.5 4.0 34 3-38 14-47 (458)
420 cd01337 MDH_glyoxysomal_mitoch 76.4 4 0.0001 20.4 3.9 30 8-37 3-35 (310)
421 KOG2018 consensus 76.2 3.8 9.8E-05 20.5 3.7 33 8-41 77-109 (430)
422 KOG3923 consensus 76.2 4 0.0001 20.4 3.8 43 6-48 4-50 (342)
423 PRK08017 short chain dehydroge 76.0 5.1 0.00013 19.7 4.3 41 2-44 1-42 (256)
424 PRK08263 short chain dehydroge 75.6 5.3 0.00014 19.5 4.3 79 1-120 1-81 (275)
425 cd00300 LDH_like L-lactate deh 75.6 3.5 8.9E-05 20.8 3.4 31 8-38 1-33 (300)
426 PRK07024 short chain dehydroge 75.4 5 0.00013 19.7 4.2 42 2-45 1-43 (256)
427 PRK03659 glutathione-regulated 75.4 5.9 0.00015 19.2 4.5 24 18-41 53-80 (602)
428 PRK06949 short chain dehydroge 75.0 6.2 0.00016 19.1 6.6 78 8-120 12-90 (258)
429 cd01075 NAD_bind_Leu_Phe_Val_D 74.5 6.3 0.00016 19.0 4.6 34 7-40 30-63 (200)
430 COG0169 AroE Shikimate 5-dehyd 74.5 5.5 0.00014 19.4 4.2 23 8-30 129-151 (283)
431 KOG2764 consensus 74.5 2 5.2E-05 22.5 2.0 19 3-21 65-83 (247)
432 PRK12384 sorbitol-6-phosphate 74.3 6.2 0.00016 19.1 4.4 38 2-41 1-39 (259)
433 TIGR00562 proto_IX_ox protopor 73.9 4.7 0.00012 19.9 3.7 43 6-48 3-52 (556)
434 pfam01593 Amino_oxidase Flavin 73.6 3.5 8.8E-05 20.9 3.0 54 104-158 207-260 (444)
435 COG1648 CysG Siroheme synthase 73.1 6.8 0.00017 18.8 4.4 39 8-46 15-54 (210)
436 TIGR01763 MalateDH_bact malate 73.1 2.9 7.3E-05 21.4 2.4 29 8-36 4-34 (308)
437 COG0771 MurD UDP-N-acetylmuram 72.8 5.2 0.00013 19.6 3.7 70 325-394 271-343 (448)
438 PRK07201 short chain dehydroge 72.2 7.1 0.00018 18.6 6.0 234 180-420 166-425 (663)
439 smart00341 HRDC Helicase and R 71.9 4.7 0.00012 19.9 3.3 34 575-608 29-62 (81)
440 cd05294 LDH-like_MDH_nadp A la 71.7 6.2 0.00016 19.1 3.9 28 8-35 3-31 (309)
441 KOG1800 consensus 71.6 6.5 0.00017 18.9 4.0 32 7-38 22-55 (468)
442 PRK01368 murD UDP-N-acetylmura 71.5 5.3 0.00013 19.6 3.5 69 326-394 271-342 (450)
443 pfam03446 NAD_binding_2 NAD bi 71.5 5.5 0.00014 19.4 3.6 38 1-42 1-38 (163)
444 PRK00258 aroE shikimate 5-dehy 71.4 7.5 0.00019 18.5 4.7 23 20-42 26-48 (275)
445 cd01339 LDH-like_MDH L-lactate 71.1 5.7 0.00014 19.3 3.6 27 8-35 1-27 (300)
446 PRK07109 short chain dehydroge 71.1 7.6 0.00019 18.4 6.2 36 8-43 10-47 (338)
447 PRK13394 3-hydroxybutyrate deh 70.9 7.4 0.00019 18.5 4.1 34 8-41 10-44 (262)
448 cd05291 HicDH_like L-2-hydroxy 70.7 7.1 0.00018 18.7 4.0 32 8-39 3-36 (306)
449 PRK03803 murD UDP-N-acetylmura 70.6 6 0.00015 19.1 3.6 32 7-38 9-40 (448)
450 PRK12823 benD 1,6-dihydroxycyc 70.6 7.7 0.0002 18.4 4.7 37 1-37 1-41 (260)
451 PRK06720 hypothetical protein; 70.5 7.8 0.0002 18.4 6.5 78 8-120 18-97 (169)
452 PRK07502 cyclohexadienyl dehyd 70.5 7.5 0.00019 18.5 4.1 40 1-43 5-46 (307)
453 PTZ00142 6-phosphogluconate de 70.3 6.2 0.00016 19.1 3.6 45 1-45 1-45 (474)
454 pfam03435 Saccharop_dh Sacchar 70.1 6.7 0.00017 18.8 3.8 38 8-45 1-40 (384)
455 PRK07776 consensus 70.0 7.9 0.0002 18.3 6.6 42 1-42 1-46 (252)
456 PRK07831 short chain dehydroge 69.9 8 0.0002 18.3 4.2 38 8-45 19-58 (261)
457 PRK06019 phosphoribosylaminoim 69.7 7.4 0.00019 18.5 3.9 45 8-52 10-54 (377)
458 KOG2017 consensus 69.6 4 0.0001 20.4 2.5 30 4-33 65-94 (427)
459 KOG1201 consensus 69.5 5.8 0.00015 19.3 3.3 34 8-41 41-75 (300)
460 PRK12550 shikimate 5-dehydroge 69.5 8.2 0.00021 18.2 4.6 21 310-330 220-240 (272)
461 PRK07417 arogenate dehydrogena 69.4 8.2 0.00021 18.2 4.4 35 8-42 4-38 (280)
462 cd01491 Ube1_repeat1 Ubiquitin 68.6 7.4 0.00019 18.5 3.8 42 6-47 20-62 (286)
463 TIGR03197 MnmC_Cterm tRNA U-34 67.9 8.7 0.00022 18.0 4.0 60 97-159 131-191 (381)
464 PRK12743 acetoin dehydrogenase 67.8 6.5 0.00017 18.9 3.3 37 2-40 1-38 (253)
465 PRK06139 short chain dehydroge 67.7 8.3 0.00021 18.2 3.8 77 8-120 8-87 (324)
466 TIGR03573 WbuX N-acetyl sugar 67.4 8.9 0.00023 17.9 4.3 35 4-38 58-94 (343)
467 COG2910 Putative NADH-flavin r 67.1 9.1 0.00023 17.9 4.6 37 8-44 3-40 (211)
468 cd01488 Uba3_RUB Ubiquitin act 66.9 9.1 0.00023 17.9 4.4 33 8-41 2-34 (291)
469 PRK05867 short chain dehydroge 66.7 9.1 0.00023 17.9 3.9 34 8-41 12-46 (253)
470 pfam00670 AdoHcyase_NAD S-aden 66.7 7.2 0.00018 18.6 3.4 31 8-38 26-56 (162)
471 PRK02705 murD UDP-N-acetylmura 66.5 8.9 0.00023 17.9 3.8 31 8-38 3-33 (459)
472 PRK07102 short chain dehydroge 66.1 9.5 0.00024 17.8 4.0 37 8-44 4-41 (243)
473 PRK06123 short chain dehydroge 65.9 9.5 0.00024 17.7 4.4 34 1-37 1-36 (249)
474 PRK06180 short chain dehydroge 65.6 9.6 0.00025 17.7 4.4 42 1-44 1-44 (277)
475 PRK07097 gluconate 5-dehydroge 65.6 9.6 0.00025 17.7 4.7 41 1-41 1-47 (265)
476 PRK10637 cysG siroheme synthas 65.6 9.6 0.00025 17.7 3.8 45 3-49 12-57 (457)
477 cd01490 Ube1_repeat2 Ubiquitin 65.3 8.4 0.00021 18.1 3.5 34 8-41 2-39 (435)
478 TIGR02964 xanthine_xdhC xanthi 64.9 10 0.00025 17.6 4.0 49 6-54 116-166 (270)
479 PRK07062 short chain dehydroge 64.4 10 0.00026 17.5 4.4 41 1-41 1-45 (265)
480 TIGR02354 thiF_fam2 thiamine b 63.9 7.6 0.00019 18.4 3.1 29 6-34 22-50 (200)
481 PRK12548 shikimate 5-dehydroge 63.9 10 0.00026 17.5 4.2 25 20-44 30-54 (289)
482 PRK09897 hypothetical protein; 63.5 11 0.00027 17.4 7.8 137 8-157 4-165 (535)
483 PRK05993 short chain dehydroge 63.5 11 0.00027 17.4 4.3 41 2-44 3-44 (277)
484 PRK05650 short chain dehydroge 63.4 11 0.00027 17.4 6.2 36 8-43 3-39 (270)
485 TIGR02360 pbenz_hydroxyl 4-hyd 63.2 11 0.00027 17.4 4.5 31 8-38 5-35 (393)
486 PRK08643 acetoin reductase; Va 63.1 11 0.00027 17.4 3.7 37 2-41 1-39 (256)
487 cd07659 BAR_PICK1 The Bin/Amph 62.8 7 0.00018 18.7 2.7 15 604-618 168-182 (215)
488 PRK06914 short chain dehydroge 62.4 11 0.00028 17.3 4.1 38 2-41 1-40 (280)
489 COG1179 Dinucleotide-utilizing 62.3 8.1 0.00021 18.2 2.9 36 6-43 31-67 (263)
490 KOG1346 consensus 61.8 6.6 0.00017 18.9 2.4 66 355-420 472-554 (659)
491 pfam00289 CPSase_L_chain Carba 61.5 11 0.00029 17.2 4.7 35 8-42 4-38 (109)
492 PRK06124 gluconate 5-dehydroge 60.6 12 0.0003 17.1 6.6 35 8-42 17-52 (259)
493 PRK02201 putative inner membra 60.6 9.9 0.00025 17.6 3.1 11 267-277 66-76 (392)
494 PRK04690 murD UDP-N-acetylmura 60.5 12 0.0003 17.1 4.2 32 3-36 8-39 (468)
495 PRK07478 short chain dehydroge 60.5 12 0.0003 17.1 5.5 41 1-41 1-43 (254)
496 cd05213 NAD_bind_Glutamyl_tRNA 60.2 12 0.0003 17.0 4.6 36 1-38 176-211 (311)
497 PRK13479 2-aminoethylphosphona 59.5 12 0.00031 16.9 5.9 81 3-120 53-135 (368)
498 COG1004 Ugd Predicted UDP-gluc 59.3 12 0.00032 16.9 4.4 44 2-49 1-44 (414)
499 PRK00045 hemA glutamyl-tRNA re 58.8 13 0.00032 16.9 4.7 35 1-37 180-214 (429)
500 TIGR02442 Cob-chelat-sub cobal 58.8 5.2 0.00013 19.6 1.5 35 31-65 4-48 (688)
No 1
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=100.00 E-value=0 Score=1832.44 Aligned_cols=616 Identities=53% Similarity=0.853 Sum_probs=605.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
++.++|||||||||||||||||++||+|++|+|+||++++||+|||||||||+||||||||||||||+|+++||+++|||
T Consensus 2 ~~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~ 81 (621)
T PRK05192 2 YYPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQF 81 (621)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98887988998975799999999996799679996581311586045203672165766687753689999998876168
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 87307878555346787849999999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
||||+||||||||||||+||.+|+++|++.|++||||+|+|+||++|+.+++.+.||.|.+|..+.|++||+||||||+|
T Consensus 82 r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlttGTFL~G 161 (621)
T PRK05192 82 RMLNTSKGPAVRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLTTGTFLRG 161 (621)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCCC
T ss_conf 76158888300673988859999999999996499978998145799987999999996687099852699831564562
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240 (626)
Q Consensus 161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~ 240 (626)
++|+|...+++||+|+.++.+||+++.++||+++|||||||||++++||||++++.|++|+.+.||||++.....+|++|
T Consensus 162 ~ihiG~~~~~~GR~Ge~~s~~Ls~~l~~~gf~~gRlKTGTPpRl~~~SId~s~le~Q~gD~~p~pFSf~~~~~~~~q~~C 241 (621)
T PRK05192 162 KIHIGEKSYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGDEDPPPFSFMTAEIHPPQIPC 241 (621)
T ss_pred EEEECCEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68755501146677760345889999973997000147998510367668866731469999844524677778675632
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320 (626)
Q Consensus 241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~ 320 (626)
|.|+||++||+++++|++.||||+|.+.++|||||||||||++||++|++|||||||||++++++|+||||||||+++|+
T Consensus 242 ~iT~Tn~~th~iI~~nl~~Spmy~G~I~g~GPRYCPSIEdKVvRF~dk~~HqiFLEPEGl~t~~iY~NG~STSLP~evQ~ 321 (621)
T PRK05192 242 YITYTNEKTHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGLDTNEVYPNGISTSLPEDVQL 321 (621)
T ss_pred CCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCHHHHH
T ss_conf 02264488999998156347512786612699999988998601325566323670156778757526755678989999
Q ss_pred HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400 (626)
Q Consensus 321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~ 400 (626)
+++|||||||||+|+||||||||||+||++|++|||+|+++|||||||||||||||||||||||||||||++++|++||+
T Consensus 322 ~~lrsIpGLE~a~i~rpGYAIEYDyvdP~qL~~tLEtK~i~gLf~AGQINGTTGYEEAAaQGliAGINAa~~~~~~~p~i 401 (621)
T PRK05192 322 EMLRSIPGLENAEILRPGYAIEYDYFDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI 401 (621)
T ss_pred HHHHCCCCCCEEEEEECCEEEEECEECHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 99852757551699751114664405723433353316559877777667750789988546798999999965999876
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480 (626)
Q Consensus 401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~ 480 (626)
|+|+||||||||||||||||+||||||||||||||+||+||||+|||++|+++|||+++||+.|++|++.++++.+.|++
T Consensus 402 l~R~eaYIGVlIDDLvtkGv~EPYRMFTSRAEyRL~LR~DNAD~RLt~~g~~~Glv~~~r~~~~~~k~~~~~~~~~~L~~ 481 (621)
T PRK05192 402 LKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKS 481 (621)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 46031124441566760799964103304777776513665888879999984998899999999999999999999962
Q ss_pred CCCCCHHHHHHHC---CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3688326766201---0125886647889854899998999862366113999999998898677779899999999998
Q gi|254780808|r 481 LVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK 557 (626)
Q Consensus 481 ~~~~p~~~~~~~~---~~~~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klk 557 (626)
++++|+.+....+ ...++++.++++++|+||++++++|.+++|+ +++.+.+|+++++||+|||+||+++|++++
T Consensus 482 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lL~rp~v~~~~l~~~~~~---~~~~v~~~veie~kY~gYi~Rq~~~i~~~~ 558 (621)
T PRK05192 482 TRVTPNEEAVNELLALGGAPLKRGVSLADLLRRPEITYEDLAELLPA---LDPEVAEQVEIEIKYEGYIERQQEEIEKLK 558 (621)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83380167776776447777788713999838999899999865657---999999999998402999999999999997
Q ss_pred HHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 51157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r 558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619 (626)
Q Consensus 558 k~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k 619 (626)
++|+++||+||||+.|+|||+|++|||+++||.||||||||||||||||++|++||||++++
T Consensus 559 ~~e~~~IP~~~dY~~i~gLS~E~~eKL~~~rP~TlgqAsRI~GvtPa~i~~Ll~~lk~~~~~ 620 (621)
T PRK05192 559 RLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISGVTPADISILLVYLKKRGRK 620 (621)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 34689893997956785356999999974699998899668998999999999999986569
No 2
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=0 Score=1769.31 Aligned_cols=617 Identities=54% Similarity=0.856 Sum_probs=600.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
|.+.||||||||||||||||+++||||++|+|+|+++|++|+|||||||||+||||||||||||||+|++++|+++||||
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHCCCCHH
T ss_conf 99878569989984204777766436980799973777446503564457735532677524124557776665078653
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 730787855534678784999999999999708996898001011202588-1132220358633445433346643101
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~-~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
|||+||||||||+|||+||.+|++.|++.|+++|||+|+|++|++|..+++ .+.||.|..|..+.|++||+||||||+|
T Consensus 81 ~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G 160 (621)
T COG0445 81 MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRG 160 (621)
T ss_pred HCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCEEECCEEEEEECCCCCC
T ss_conf 33677762104506544289999999999854999552476667871337976899992787851068799963344362
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240 (626)
Q Consensus 161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~ 240 (626)
++|+|...+++||.|+.+|..||..|.++||+++|||||||||++++||||++++.|++|+++..|||.. .....|++|
T Consensus 161 ~I~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs~le~q~gD~~~~~fs~~~-~~~~~Qi~C 239 (621)
T COG0445 161 KIHIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGDEPPPVFSFTT-EPHPPQIPC 239 (621)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCCCCCCE
T ss_conf 6886664566777787310577899996594774331689986589866746514376888987413577-777545512
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH 320 (626)
Q Consensus 241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~ 320 (626)
|+||||+.||++|++|+|.||||+|.+.|+|||||||||||++||+||++|||||||||++++++|+||||||||+++|.
T Consensus 240 ~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~ 319 (621)
T COG0445 240 YITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQE 319 (621)
T ss_pred EEECCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHH
T ss_conf 45468747899999765427100350234488889977876414788765247866788887638647514669899999
Q ss_pred HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r 321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400 (626)
Q Consensus 321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~ 400 (626)
+++|||||||||+|+|||||||||||+|++|++|||+|+++||||||||||||||||||||||+||||||+++++++||+
T Consensus 320 ~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGYEEAAaQGliAGiNAal~~~~~~p~i 399 (621)
T COG0445 320 QIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI 399 (621)
T ss_pred HHHHHCCCCCCCEEECCCEEEEECCCCHHHCCCCHHHCEECCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99871846123346213115663230745455413222644627755136873367787624888899999746899824
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r 401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480 (626)
Q Consensus 401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~ 480 (626)
|+|+||||||||||||||||+||||||||||||||+||+||||+|||++|+++|||+++||+.|++|+++++.++++|++
T Consensus 400 l~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~ 479 (621)
T COG0445 400 LRRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKS 479 (621)
T ss_pred CCCCCCEEEEEEHHHHCCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36675114567401113799873431100888878761245666616778870788899999999999999999999873
Q ss_pred CCCCCHHHHHHHCC-CC-CCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 36883267662010-12-58866478898548999989998623661139999999988986777798999999999985
Q gi|254780808|r 481 LVLTSKNLSSTSIS-FK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKF 558 (626)
Q Consensus 481 ~~~~p~~~~~~~~~-~~-~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klkk 558 (626)
++++|+.+...... .. +.....+++++|+||++++++|.+++|....++..+.+|+||++||+|||+||+.+|++++|
T Consensus 480 ~~v~p~~~~~~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~p~~~~~~~~v~eqveieiKY~gYI~rq~~~i~~~~~ 559 (621)
T COG0445 480 TWVTPSEVAKELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPADLDAEVLEQVEIEIKYEGYIKRQQEQIEKLKR 559 (621)
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHH
T ss_conf 02570788899998625776430029999638898899998747762336888986762000099999999999999977
Q ss_pred HCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r 559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK 619 (626)
Q Consensus 559 ~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k 619 (626)
+|+++||.||||+.|+|||+|++|||+++||.||||||||||||||||++|++||+++..+
T Consensus 560 ~e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsGitpadI~~Ll~~l~~~~~~ 620 (621)
T COG0445 560 LENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGVTPADISILLVYLKKGKNK 620 (621)
T ss_pred HHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 6445698766843246433999999851599847776405799999999999998530137
No 3
>KOG2311 consensus
Probab=100.00 E-value=0 Score=1531.41 Aligned_cols=616 Identities=48% Similarity=0.822 Sum_probs=595.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998076260124667002211224899999863039999998863148873
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL 83 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l 83 (626)
-.||||||||||||||||.++||+|.+|+|+|++.|+||||||||||||+|||||+||+|||||+|++++|.++|||+||
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHH
T ss_conf 75557998787520488898874187347863255610134457655876653024431200256765411555568775
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCC-----EEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 07878555346787849999999999997089968980010112025881-----1322203586334454333466431
Q gi|254780808|r 84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~-----~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
|+|||||||+||||+||.+|+++|++.|.++|||+|.+++|++|+..++. +.||.+.+|+.+.+.+||+||||||
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL 186 (679)
T KOG2311 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL 186 (679)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEEEECCCEECCCEEEEEECCCE
T ss_conf 02579722370876519999999998752687600122001333631688873477789975572731434999613212
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCC---C
Q ss_conf 0134443202332224751113310000101120054444544101100001344321147876687774356578---0
Q gi|254780808|r 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N 235 (626)
Q Consensus 159 ~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~---~ 235 (626)
+|.+++|.+.+++||+||.++.+|++.+.++||++||+|||||||++++||||++++.|.+|+.+.||||.+...+ .
T Consensus 187 ~~~I~iGlk~~pAGRiGe~ps~~Lse~l~klGF~~gRLKTGTPpRlak~sInfS~le~q~gD~~p~pfSFln~~v~i~~e 266 (679)
T KOG2311 187 RGQINIGLKTHPAGRIGEQPSIGLSETLQKLGFELGRLKTGTPPRLAKESINFSKLERQIGDEPPIPFSFLNETVWIEPE 266 (679)
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCCCCCCHH
T ss_conf 23785043114474446774357889999727142442479984313345776876553389998740023774244721
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCC
Q ss_conf 00000001232001477764024575414432356422255321233567643345201301578776454347766689
Q gi|254780808|r 236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP 315 (626)
Q Consensus 236 ~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~ 315 (626)
.|++||.+||++.+|+++++|+|..+-+.+.+. |||||||||+|++|||+| .|+|||||||++.++||++|||++||
T Consensus 267 ~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~~--gPRYCPSiEsKilRFp~k-~HqiwLEpEGlDs~~iYpqG~S~tlp 343 (679)
T KOG2311 267 DQLPCYLTHTTPRVHEIVRKNLHENPHVKETTI--GPRYCPSIESKILRFPDK-SHQIWLEPEGLDSDLIYPQGLSNTLP 343 (679)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHCCCCC-CCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 047620024768899999744213752245545--886687478777227541-13265357678887451465556797
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88999999875434001001100012110235456567765403341566213304334666666778999998742033
Q gi|254780808|r 316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395 (626)
Q Consensus 316 ~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~ 395 (626)
.+.|..++|+|||||||+++||||+|+|||++|+||++|||+|+++|||||||||||||||||||||++|||||++...+
T Consensus 344 ee~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQlk~sLeTkkV~GLF~AGQINGTTGYEEAAAQGIiAGiNA~~~a~~ 423 (679)
T KOG2311 344 EELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLETKKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRASG 423 (679)
T ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCEECCCCHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78888999855573224351356531222458687360565400143477412358540577876516753005555137
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45654653210799999988607877402442000122121157871366888787-73788389999999999999999
Q gi|254780808|r 396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFL 474 (626)
Q Consensus 396 ~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~-~~GLv~~~r~~~~~~k~~~~~~~ 474 (626)
++|++++|+|+|||||||||||+||.||||||||||||||+||.||||.||||+|+ ..||+|+.||+.|++++..+++.
T Consensus 424 ~~~~~v~Rte~yIGvLIDDL~t~g~~EPYRMfTSRsEfRLslR~DNAD~RLT~lg~~~~~l~s~~rw~~fq~~k~~l~~~ 503 (679)
T KOG2311 424 KPPVVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRSEFRLSLRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSRLDEG 503 (679)
T ss_pred CCCEEEECCCCEEEEEEHHHHCCCCCCCHHHHCCHHHHEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99705642543367772233415876506653003341566247764421461005434864678999999889888889
Q ss_pred HHHHHHCCCCCHHHHHHHCCCCCCCCCCC----HHHHHCCCCCCHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99876336883267662010125886647----889854899998999862366---11399999999889867777989
Q gi|254780808|r 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRT----AYEFLSYPDFSIQNLFSICPD---ARKFSSLVIERLQIESSYAAYTG 547 (626)
Q Consensus 475 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~s----~~~lL~rp~v~~~~l~~~~~~---~~~~~~~~~eqieie~KY~gYI~ 547 (626)
++.+++.++++..|.+..- +...+..++ ++++|++.++++.+|.+..|+ ..+++..+.++++||.||++||.
T Consensus 504 ~~~lk~~k~s~~~w~~l~~-ia~~s~~~~k~~~a~d~l~~~~~d~~~L~~~~p~~~~~~~~~r~~~erl~Ie~kYe~~i~ 582 (679)
T KOG2311 504 IKRLKEFKLSSQKWKKLIP-IASISTSRSKPVRALDLLKFKDLDLDKLIECHPDPLKNLTIPRELAERLKIEGKYESFIV 582 (679)
T ss_pred HHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCHHHHHHHEEEEEEEHHHHH
T ss_conf 9998886211888876324-665344665415466510445466899998566432024212887766266312113899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998511578769998223546568999876232737888750288999899999999998504656433
Q gi|254780808|r 548 RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI 623 (626)
Q Consensus 548 RQ~~ei~klkk~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k~~~~ 623 (626)
||+++++.+.++|++.||.|+||..+++||.|++|||+++||+||||||||+|||||||..||+|+|++..+.+-+
T Consensus 583 rq~q~~q~~~~de~~~lP~D~Dy~tm~~lS~E~rekL~~vrP~TIg~asRI~GvtpaaI~~Llr~v~~~~~~~s~~ 658 (679)
T KOG2311 583 RQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRVRPQTIGAASRIQGVTPAAIIRLLRHVKTNQRRQSAM 658 (679)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9998998776776523885456101144479999886415821233455237988899999999860235556654
No 4
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=100.00 E-value=0 Score=1125.92 Aligned_cols=611 Identities=50% Similarity=0.814 Sum_probs=597.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57889889426899999998589989999807626012466700221122489999986303999999886314887307
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~ 85 (626)
|||+||||||||||||++++++|.+|.|++++++++|.++|||++||++||++++|+|+|||+|++++|.+++|||+||.
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~~~~~g~~~cnp~~gg~~~g~~~~e~d~lgg~~g~~~d~~~~~~~~ln~ 80 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLNLDTLGKCPCNPAIGGPGKGILVKEIDALGGLMGKAADKTGLQFRLLNS 80 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 90688617620035677765417513455404122202556644465323410002334201466655344444443204
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCEEEHHHHCCCCCC-----CCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 87855534678784999999999999708---9968980010112025-----881132220358633445433346643
Q gi|254780808|r 86 KKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGEVAGFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 86 skGpAv~alraqvDR~~fs~~vt~~l~~~---pni~i~~~eV~~l~~~-----~~~~~~v~~~~g~~~~~~~viiatGtf 157 (626)
+||||||++|||+|+..|...++..+++. ||+++.++++.++... ++.+.|+.+..|..+.+..+|++||||
T Consensus 81 ~~gp~~~~~~~~~d~~~y~~~~~~~~~~~~~~pn~~~~~~~~~~~~~~~~gcg~~~~~g~~~~~g~~~~~~~~~~~~g~~ 160 (630)
T TIGR00136 81 SKGPAVRALRAQIDKLLYRKWAKNTLENQKAHPNLSLLQGEVEDLLLEDPGCGNDEVKGVVTKDGAEFRAKAVVLTTGTF 160 (630)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 56641000245666899999999887531146533566767777764046888651246653046300023256740410
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 101344432023322247511133100001011200544445441011000013443211478766877743565780--
Q gi|254780808|r 158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-- 235 (626)
Q Consensus 158 l~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~-- 235 (626)
+.+.+|+|......|+.++.++..++..+..+||+.+|+|||||||++.+++||+.++.+.+|..+.+|||.+..+..
T Consensus 161 l~g~~~~g~~~~~~g~~~~~~~~~l~~~l~~~g~~~~~l~~g~p~~~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~~~~ 240 (630)
T TIGR00136 161 LRGKIHIGDLSYEGGRAGEKPSVGLSETLRELGFKLGRLKTGTPPRIDKRSIDFSKLEVQPGDEPPPPFSFLNKNFLPPL 240 (630)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHEECCCCCCCHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCC
T ss_conf 02223422321234544321101234557553630000026875101000033011201367654430000454234440
Q ss_pred -CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCC
Q ss_conf -0000000123200147776402457541443235642225532123356764334520130157877645434776668
Q gi|254780808|r 236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL 314 (626)
Q Consensus 236 -~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL 314 (626)
.|++||.++|++.+|+++..|+|.+|+|.|.+.+.||||||+++||+.+|.+++.|++|++||+.+.+.+|++||+|+|
T Consensus 241 ~~~~~c~~~~~~~~~h~~~~~n~~~~~~~~g~~~~~gp~ycp~~ed~~~~f~~~~~h~~~~ep~g~~~~~~y~~g~~~~~ 320 (630)
T TIGR00136 241 EKQLPCYLTHTNPKTHELIRDNLHRSPLYSGSIEGNGPRYCPSIEDKVVRFADKERHQIFLEPEGLNSDEVYLNGLSTSL 320 (630)
T ss_pred HHHCEEEEEECCHHHHHHHHHHHHHCHHCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCCCC
T ss_conf 01010235405446789987422100000450102576436422445431257655436754567653300103312237
Q ss_pred CHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98899999987543400100110001211023545656776540334156621330433466666677899999874203
Q gi|254780808|r 315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394 (626)
Q Consensus 315 ~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~ 394 (626)
|.++|.++++++||++||+++||||+++|||++|++|+++|++|.+.|||||||||||+||+|||+||++|||||++.++
T Consensus 321 p~~~~~~~~~~~~g~~~~~~~~~gy~~eyd~~~~~~l~p~l~~~~~~gl~~~g~~ng~~gyee~~~~g~~~g~n~~~~~~ 400 (630)
T TIGR00136 321 PEDVQLKLLRSLPGLENAEILRPGYAIEYDFFDPTQLKPTLETKLIKGLFLAGQINGTTGYEEAAAQGLLAGINAALKLQ 400 (630)
T ss_pred CHHHHHHHHHHCCCHHHEEEECCCCEEEECCCCCHHCCCHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 75789999974132010001113320110143510012003334320001211125765401343201355545777641
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 34565465321079999998860787740244200012212115787136688878773788389999999999999999
Q gi|254780808|r 395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL 474 (626)
Q Consensus 395 ~~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~ 474 (626)
+++++++.|+++|||||||||+|+|+.||||||||||||||.||+||+|.||+++|+++|++++++|..|.++...++..
T Consensus 401 ~~~~~~~~~~~~y~g~~~~dl~~~~~~~py~~~~~~~e~~l~l~~d~~~~~l~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 480 (630)
T TIGR00136 401 GKEPFILKRSEAYLGVLIDDLVTKGTKEPYRLFTSRAEYRLLLREDNADLRLTPIGRELGLIDDDRYARFLKKKANIEEE 480 (630)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 55432020354300223344441255521455430113311110253034554434341354568898876677888999
Q ss_pred HHHHHHCCCCCHHHHHHHC---CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCC--CC--HHHHHHHHHHHHHHHHHH
Q ss_conf 9987633688326766201---0125886647889854899998999862366113--99--999999889867777989
Q gi|254780808|r 475 RSLLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FS--SLVIERLQIESSYAAYTG 547 (626)
Q Consensus 475 ~~~l~~~~~~p~~~~~~~~---~~~~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~--~~--~~~~eqieie~KY~gYI~ 547 (626)
..+++++++++.......+ ...+.....+++++++||+++++++.++.|.... ++ ..+.+++++++||+|||+
T Consensus 481 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~y~gy~~ 560 (630)
T TIGR00136 481 KERLKSTRLGPSKEVLEELKKLLGSPLKDEVDGYDLLKRPEINLDKLTKLLPFLPPNLLDDPEEVLEQVEIEVKYEGYIE 560 (630)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHEEECHHHH
T ss_conf 98887530331577888887631001101101344330356655667554020000001311676654332000001344
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999851157876999822354656899987623273788875028899989999999999850
Q gi|254780808|r 548 RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN 616 (626)
Q Consensus 548 RQ~~ei~klkk~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~ 616 (626)
||+..++++.++++++||.+|||..++|||+|+++||++++|.+++||+||+||+|++|.+|+++++.+
T Consensus 561 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~e~~~~l~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 629 (630)
T TIGR00136 561 KQEEEIKKLDRLENVKLPAGFDYRKIPGLSTEAREKLSKFRPLSLGQASRISGINPADISALLVYLKNQ 629 (630)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 567888887655432167655411202224789998751363012223221577557889998876327
No 5
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=100.00 E-value=0 Score=1106.19 Aligned_cols=391 Identities=56% Similarity=0.923 Sum_probs=389.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
||||||||||||||||++||+|++|+|+|++.++||+|||||||||+||||||+|||||||+|+++||+++|||||||+|
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~LN~s 80 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRMLNTS 80 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 97999987899999999986899689997342431588656556875304399999872589999999975456530446
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 78555346787849999999999997089968980010112025881132220358633445433346643101344432
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK 166 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g~ 166 (626)
||||||||||||||++|+++|++.|++||||+|+|+||++|+.+++.+.||.+.+|..+.+++||+|||||++|.+|+|.
T Consensus 81 kGpAv~a~R~q~Dr~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g~~i~a~~vIltTGTFl~G~i~iG~ 160 (391)
T pfam01134 81 KGPAVRALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGTFLNGKIHIGL 160 (391)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCCCEEECCEEEEECCCCCCCCEEEEE
T ss_conf 78766685899879999999999997599939995464003026995999993799785144599931564454155344
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02332224751113310000101120054444544101100001344321147876687774356578000000001232
Q gi|254780808|r 167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246 (626)
Q Consensus 167 ~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~~~~~t~ 246 (626)
..+++||.++.++..|++++.++|++++|||||||||++++||||++++.|++|+.+.+|||++.+...+|++||.++|+
T Consensus 161 ~~~~~Gr~ge~~s~~Ls~~L~~lg~~~~rlktGTpPri~~~SId~~~l~~q~~d~~~~~fs~~~~~~~~~q~~c~~t~tn 240 (391)
T pfam01134 161 KCYPAGRLGELTSEGLSESLKELGFELGRFKTGTPPRIDKDSIDFSKLEEQPGDKPGPPFSYLNCPMNKEQYPCFLTYTN 240 (391)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 43235788866438999999982862103206878065359737200525338999999787899898203447998875
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 00147776402457541443235642225532123356764334520130157877645434776668988999999875
Q gi|254780808|r 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI 326 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~I 326 (626)
+.||.++++|++.+|||.|.+.+.|||||||||||++||++|++|||||||||+++++||||||||||||++|+++||||
T Consensus 241 ~~th~ii~~~~~~s~~~~G~I~~~gpRycpSiedKv~rf~dk~~h~IfLepEg~~~~~~y~nG~stslp~~~Q~~~~r~I 320 (391)
T pfam01134 241 EATHEIIRDNLHRSPMFEGCIEGIGPRYCPSIEDKPVRFADKPYHQVFLEPEGLDTDEYYLVGFSTSLPEDVQKRVLRTI 320 (391)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 88789887411330202565563379999987766635555666338973267768679850655479989999998638
Q ss_pred HHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43400100110001211023545656776540334156621330433466666677899999874203345
Q gi|254780808|r 327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 327 PGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~ 397 (626)
||||||+|+||||+|||||++|++|++|||+|.+||||||||||||||||||||||||||||||++++|++
T Consensus 321 pGLena~~~r~Gy~veyd~i~p~~l~~tLe~k~~~~Lf~AGQInGt~GYeEAaaqGliAGiNaa~~~~~~e 391 (391)
T pfam01134 321 PGLENAEIVRPGYAIEYDYIDPPQLLPTLETKKIPGLFFAGQINGTEGYEEAAAQGLLAGINAARKALGKE 391 (391)
T ss_pred CCCCCCEEEECCEEEEECCCCCHHCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 16014457633411554618802203035405469878766224770799999999999999999971999
No 6
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=100.00 E-value=0 Score=878.87 Aligned_cols=364 Identities=26% Similarity=0.311 Sum_probs=317.2
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---------HHHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf 9876357889889426899999998589989999807---------6260124667002211----22489999986303
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---------TSTIGSMSCNPAIGGL----GKGHLVREIDALDG 67 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~---------~~~~ael~Cnps~gg~----akg~L~~Ei~aLgg 67 (626)
||+++ ||||||||||||||||+||+|++|+|+||+ .|+||||||||||||+ ||||||+|||||||
T Consensus 1 ~m~~~--ViVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgg 78 (434)
T PRK05335 1 MMMKP--VNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS 78 (434)
T ss_pred CCCCC--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99885--6998986899999999996899679999335667776246663687356456888644420589999998469
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r 68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147 (626)
Q Consensus 68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~ 147 (626)
+|+++||+++| |||+|| | |||++|+++||+.|++||||+|+|+||++|+.++
T Consensus 79 lm~~~aD~~~v----------PAg~al-a-VDR~~y~~~m~~~l~~~pni~i~~~eV~~i~~~~---------------- 130 (434)
T PRK05335 79 LIIEAADAHRV----------PAGGAL-A-VDREGFSAYVTEALKNHPLITVIREEVTEIPEDG---------------- 130 (434)
T ss_pred HHHHHHHHHCC----------CCCCHH-H-HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----------------
T ss_conf 89999898667----------872178-9-9899999999999974999499984402557889----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf 543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226 (626)
Q Consensus 148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~ 226 (626)
.||+||||++++ .|++++.++ |.+..+|+|++|||++++||||++++.|...+....
T Consensus 131 -~vIiaTGplts~--------------------~L~~~l~~~~G~~~l~f~da~~P~v~~~SID~~~~~~~sr~~kg~~- 188 (434)
T PRK05335 131 -ITIIATGPLTSD--------------------ALAEAIKALTGEDYLYFFDAAAPIVEKDSIDMDKAYLASRYDKGEA- 188 (434)
T ss_pred -CEEEECCCCCHH--------------------HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCC-
T ss_conf -889961756769--------------------9999999861964211246778532346546023100356688975-
Q ss_pred CCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEE
Q ss_conf 7435657800000000123-------20014777640245754144323564222553212335--67643345201301
Q gi|254780808|r 227 SFMTDKITNRQIECGITRT-------NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--RFGERNGHQIFLEP 297 (626)
Q Consensus 227 s~~~~~~~~~q~~~~~~~t-------~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~~~~~p~h~VqLrp 297 (626)
+|.+++...+++.+|.... ...++....++.|.|.+....+.....||||+.|.++. |++++|||||||||
T Consensus 189 dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feGC~pIE~~a~rg~~~lrfgp~kPvGL~dp~~~~~p~avVqLr~ 268 (434)
T PRK05335 189 DYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEGCLPIEVMAERGRETLRFGPMKPVGLEDPRTGKRPYAVVQLRQ 268 (434)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 52238998799889998752002035665445766578877887741476532026765667778998986644898256
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCHHH
Q ss_conf 57877645434776668988999999875434001001100012110235-45656776540334156621330433466
Q gi|254780808|r 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYE 376 (626)
Q Consensus 298 E~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteGYe 376 (626)
||+++++||+|||||||||++|++|||||||||||||+||||+|||||+| |++|++|||+|.++|||||||||||||||
T Consensus 269 En~~~~~ynlvGfsTsLp~~~Q~~i~r~IPGLEnaei~RyG~~~~ndyi~sP~~L~~tLe~K~~~~Lf~AGQInGt~GYe 348 (434)
T PRK05335 269 DNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKSRPNLFFAGQITGVEGYV 348 (434)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCCCCHHHCCCCEEECCCCCCEECCCCCCCHHHH
T ss_conf 67666645402443579859999998718673423354322333011047865548441634879827711336741889
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 66667789999987420334565465321079999998860
Q gi|254780808|r 377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417 (626)
Q Consensus 377 EAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLit 417 (626)
||||||||||||||++++|++|++|++..+ ||-|+.-+++
T Consensus 349 EAAAqGliAGiNAa~~~~Gk~p~~~p~~t~-~GaL~~~i~~ 388 (434)
T PRK05335 349 ESAASGLLAGINAARLALGKEPVVPPPTTA-LGALLNYITG 388 (434)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHCC
T ss_conf 999988999999999966999989880318-9999998448
No 7
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=100.00 E-value=0 Score=833.31 Aligned_cols=395 Identities=24% Similarity=0.315 Sum_probs=350.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH
Q ss_conf 78898894268999999985899899998076---------260124667002211----22489999986303999999
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----GKGHLVREIDALDGLMGRVA 73 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------~~~ael~Cnps~gg~----akg~L~~Ei~aLgg~m~~~a 73 (626)
.|+||||||||||||||+|+.|++|.|+|||| +++||||||||+||. |.|+|+.||++|+|++..+|
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~SliI~aA 81 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLIIEAA 81 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 36897188534689999984897279975387657787666660223202101101012012368999886307999876
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 88631488730787855534678784999999999999708996898001011202588113222035863344543334
Q gi|254780808|r 74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153 (626)
Q Consensus 74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viia 153 (626)
|.++| |||+|| | |||..||+++|+.+++||||+|+++||++||.+. .+|||
T Consensus 82 d~~~V----------PAGGAL-a-VDR~iFs~s~Te~v~sHPnv~lireEV~EIPe~~-----------------~tvia 132 (444)
T TIGR00137 82 DEAAV----------PAGGAL-A-VDRKIFSESVTEKVKSHPNVTLIREEVTEIPEEE-----------------VTVIA 132 (444)
T ss_pred HHCCC----------CCCCCC-H-HHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCC-----------------EEEEE
T ss_conf 53368----------988520-1-1278999988776412884588716400515997-----------------07986
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCC------CCCCCCC
Q ss_conf 664310134443202332224751113310000101-120054444544101100001344321147------8766877
Q gi|254780808|r 154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFA------DERLIPF 226 (626)
Q Consensus 154 tGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~------d~~~~~~ 226 (626)
|||++| .+||+.+.++ |.++..|+|+..|+|.+||||+++...... |+-+|+|
T Consensus 133 TGPLTS--------------------~aLse~lkeltG~dyLyFyDAaaPIVe~dS~d~~k~f~~SRYdKGeaaYlNCp~ 192 (444)
T TIGR00137 133 TGPLTS--------------------EALSEKLKELTGEDYLYFYDAAAPIVEKDSVDKEKAFLASRYDKGEAAYLNCPL 192 (444)
T ss_pred CCCCCC--------------------HHHHHHHHHHHCCHHHHHHHHCCCEEHHCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 388882--------------------788999987506302445530054000000452211010235776555326777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC---------CCCCCCC
Q ss_conf 74356578000000001232001--4777640245754144323564222553212335--676---------4334520
Q gi|254780808|r 227 SFMTDKITNRQIECGITRTNLET--HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--RFG---------ERNGHQI 293 (626)
Q Consensus 227 s~~~~~~~~~q~~~~~~~t~~~~--~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~~~---------~~p~h~V 293 (626)
.-..+..+++.+.-.+.-..+.+ +.-+.+++|++++..++++..+.+|+|++|.+++ |+| ++|||||
T Consensus 193 teEey~~F~eaL~~AE~vplKdFdrEka~fFEGClPIEemA~RG~kTmlfGPmKPVGL~dprtGdfrdPankeK~PyAVV 272 (444)
T TIGR00137 193 TEEEYKKFYEALLEAEKVPLKDFDREKAVFFEGCLPIEEMAKRGKKTMLFGPMKPVGLVDPRTGDFRDPANKEKKPYAVV 272 (444)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 74567789999987347889877442213322887789996243223025888864665675577777323478850687
Q ss_pred EEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf 130157877645434776668988999999875434001001100012110235-4565677654033415662133043
Q gi|254780808|r 294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGT 372 (626)
Q Consensus 294 qLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~Gt 372 (626)
|||+||++|++||||||||+|+|++|+||||.|||||||||||+|+||+|+|++ |.+|+++|++|+..+|||||||+||
T Consensus 273 QLRqedkaGtL~n~VGFQT~L~wgeQkrVfrLIPgLeNaefVR~GvMHRNTFInSp~lL~~~l~fk~r~~lFfAGQ~tGv 352 (444)
T TIGR00137 273 QLRQEDKAGTLYNLVGFQTKLKWGEQKRVFRLIPGLENAEFVRLGVMHRNTFINSPKLLTASLQFKDREDLFFAGQLTGV 352 (444)
T ss_pred EECCCCCCCCEEEEEEEEECCEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEECCC
T ss_conf 30221756762310022210101355514440578431478850743111112763565575304771331331400030
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 34666666778999998742033456546532107999999886078774024420001221211578713668887877
Q gi|254780808|r 373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK 452 (626)
Q Consensus 373 eGYeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~ 452 (626)
|||+||+|+||+|||||||.+.|++++++| .|--||-|+.=.+|+--.+ |=|.--.
T Consensus 353 EGYvas~A~G~lAGiNAarLalGe~ll~~P-~eTm~Gal~nyI~t~~~k~-----------------------fQPMnpn 408 (444)
T TIGR00137 353 EGYVASAASGLLAGINAARLALGEKLLKLP-AETMLGALVNYISTKSEKE-----------------------FQPMNPN 408 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHCCCCCC-----------------------CCCCCCC
T ss_conf 357766530147777788775066100154-1258887876520067887-----------------------6888866
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 37883899999999999999999
Q gi|254780808|r 453 LGCIGERRQKRFAKYIQEYNFLR 475 (626)
Q Consensus 453 ~GLv~~~r~~~~~~k~~~~~~~~ 475 (626)
.||+.+= -.++++|+++.+...
T Consensus 409 FGlLpeL-p~kirnKkeR~e~ya 430 (444)
T TIGR00137 409 FGLLPEL-PKKIRNKKERKEQYA 430 (444)
T ss_pred CCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 7888741-133200433667889
No 8
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=771.44 Aligned_cols=365 Identities=25% Similarity=0.308 Sum_probs=327.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076---------260124667002211----22489999986303
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----GKGHLVREIDALDG 67 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------~~~ael~Cnps~gg~----akg~L~~Ei~aLgg 67 (626)
||.+. |+||||||||||||||+|++|++|.|+|||| |+|||||||||+||. |.|+|+.|||.|||
T Consensus 1 ~~~~~--i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgS 78 (439)
T COG1206 1 MMQQP--INVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGS 78 (439)
T ss_pred CCCCC--EEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98772--5897565445199999987698379997045668975445652430212554640344445788999997211
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r 68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147 (626)
Q Consensus 68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~ 147 (626)
++..+||++.+ |||+|| | |||+.||++||+.|++||||+|+++||++||.++
T Consensus 79 lii~~Ad~~~V----------PAGgAL-A-VDR~~Fs~~vT~~l~~hpli~vireEvt~iP~dg---------------- 130 (439)
T COG1206 79 LIIEAADKHRV----------PAGGAL-A-VDRDGFSQAVTEKLENHPLIEVIREEVTEIPPDG---------------- 130 (439)
T ss_pred HHHHHHHHCCC----------CCCCEE-E-ECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----------------
T ss_conf 78664154068----------887604-6-6176778999999853997798711014689988----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf 543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r 148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF 226 (626)
Q Consensus 148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~ 226 (626)
.+||||||++++ .|++.+.++ |.+...|+|+.+|+|+.+|||+++++.+...+... -
T Consensus 131 -~~vIATGPLTs~--------------------~La~~i~~ltG~d~l~FyDAaAPIi~~dSIdmd~~~~~sRYdKg~-a 188 (439)
T COG1206 131 -ITVIATGPLTSD--------------------ALAEKIKELTGEDYLYFYDAAAPIIEFDSIDMDKAYLKSRYDKGE-A 188 (439)
T ss_pred -CEEEECCCCCCH--------------------HHHHHHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHCCCCCC-C
T ss_conf -579960898978--------------------899999986087527762124743320554347777650035564-1
Q ss_pred CCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCCCCCEE
Q ss_conf 74356578000-------0000012320014777640245754144323564222553212335--6--76433452013
Q gi|254780808|r 227 SFMTDKITNRQ-------IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--R--FGERNGHQIFL 295 (626)
Q Consensus 227 s~~~~~~~~~q-------~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~--~~~~p~h~VqL 295 (626)
.|.+++...+| +..........++....++.|++.+.+++++..++||+|+.|.++. + ++++|||||||
T Consensus 189 ~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~FegCmPIE~mA~rG~~Tl~~GPmKPvGL~~p~~~tgk~pYAVVQL 268 (439)
T COG1206 189 DYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEGCMPIEVMAERGRKTLRFGPMKPVGLEDPRDPTGKRPYAVVQL 268 (439)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 12069888999999999997434578344125612145676999986270001248888757778877778886179985
Q ss_pred EECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCH
Q ss_conf 0157877645434776668988999999875434001001100012110235-456567765403341566213304334
Q gi|254780808|r 296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTG 374 (626)
Q Consensus 296 rpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteG 374 (626)
||||+.|++||||||||+|||++|+||||||||||||||+|||+||+|+|+| |++|+++|++|+.|+||||||||||||
T Consensus 269 Rqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EG 348 (439)
T COG1206 269 RQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEG 348 (439)
T ss_pred ECCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHCCCEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHH
T ss_conf 20465664465430130352102554655367831114442033011353587666457750245888277325404215
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 66666677899999874203345654653210799999988607
Q gi|254780808|r 375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK 418 (626)
Q Consensus 375 YeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitk 418 (626)
|+||||+||+||+|||+..+|++|++++ .+.-||-|+.-+++.
T Consensus 349 YveSaA~Gllag~naa~~~~g~~~~~~P-~tT~~Gal~~yIt~~ 391 (439)
T COG1206 349 YVESAASGLLAGINAARLALGEEPLIPP-PTTALGALVNYITGA 391 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCC
T ss_conf 4677653378766799986589877798-445788899997337
No 9
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=6.8e-12 Score=104.03 Aligned_cols=37 Identities=43% Similarity=0.625 Sum_probs=34.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876357889889426899999998589989999807
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
||..+|||+|||+|.||+=||+.+++.|++|.|++..
T Consensus 8 ~~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~ 44 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKV 44 (598)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 5566379899995699999999998749907999788
No 10
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=7.7e-12 Score=103.64 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=79.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHH------------HHHHHHHHHHH---
Q ss_conf 763578898894268999999985899899998076260124667002211224------------89999986303---
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG------------HLVREIDALDG--- 67 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg------------~L~~Ei~aLgg--- 67 (626)
..+|||+|||+|.||.-||+++++.|++|.|++-.+ ++.=.++-|-||++.. |..-=|++=.+
T Consensus 6 ~~e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~--~~~~~s~~A~GGi~a~~~~~~~~Ds~e~h~~Dtl~~G~~l~d 83 (631)
T PRK07803 6 RHEYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCAAAMGNVNPKDNWQVHFGDTMRGGKFLNN 83 (631)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 310598999964999999999987699879997899--998653676576764406899998999999999986278888
Q ss_pred --HHHHHHHHHHHHHHHHCC-----CC---C-----C-CC-CCHHH-H-HHH-------HHHHHHH-------HHHHHCC
Q ss_conf --999999886314887307-----87---8-----5-55-34678-7-849-------9999999-------9999708
Q gi|254780808|r 68 --LMGRVADAAGIQFRVLNV-----KK---G-----P-AV-RGPRT-Q-ADR-------ELYRLAM-------QREILSQ 114 (626)
Q Consensus 68 --~m~~~aD~~~i~~r~ln~-----sk---G-----p-Av-~alra-q-vDR-------~~fs~~v-------t~~l~~~ 114 (626)
++-..++++.--.+.|.. .+ | + .+ .-+|. . .|+ .+..+.+ .+....+
T Consensus 84 ~~~v~~l~~~a~~~v~~Le~~Gv~f~r~~dG~~~~~~~GGhs~~R~~~~~d~tG~~i~~~L~~~~~~~~~~~~~~~~~~~ 163 (631)
T PRK07803 84 WRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDKAELGDYE 163 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999998599754489987721016886565001127875699999999999973013444432034
Q ss_pred CCCEEEH-HHHCCCCCCCCCEEEEEEC---CC--CCCCCCCCCCCCCCCCH
Q ss_conf 9968980-0101120258811322203---58--63344543334664310
Q gi|254780808|r 115 ENLDVIQ-GEVAGFNTEKNIISSIVMQ---DN--SMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 115 pni~i~~-~eV~~l~~~~~~~~~v~~~---~g--~~~~~~~viiatGtfl~ 159 (626)
.+|++.. -+|++|..+++.+.|+... .| ..+.|++||+|||-|-.
T Consensus 164 ~~i~v~~~~~v~~Ll~d~g~v~Ga~~~~~~~g~~~~~~AkaVVLATGG~g~ 214 (631)
T PRK07803 164 ARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (631)
T ss_pred CCEEEEECCEEEEEEEECCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
T ss_conf 673899332889999869999999999878982999962569986776763
No 11
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.33 E-value=4e-11 Score=98.54 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=42.9
Q ss_pred EEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEEC--CCHH--------HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1100012110235456567765403341566213304--3346--------66666778999998742033456
Q gi|254780808|r 335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING--TTGY--------EEAAAQGLVAGINSARKSNKLDC 398 (626)
Q Consensus 335 ~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~G--teGY--------eEAAAqGl~AGiNa~~~~~~~~p 398 (626)
++|+ .||. +---..+..-++..+||||.||-.+| +-|. .|+...|.+||-|||.++.+...
T Consensus 364 V~P~--aHYt-MGGI~vd~~g~t~~I~GLyAaGE~a~~GvHGANRLGgNSLlE~vVfGr~AG~~aA~~~~~~~~ 434 (657)
T PRK08626 364 VRPT--QHYS-MGGIRTNPTGESPGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIIGKYVADFCEGNDL 434 (657)
T ss_pred EECC--CCEE-CCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4213--4722-668307888862673401240353425666544444304899999999999999999862666
No 12
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=7.7e-12 Score=103.63 Aligned_cols=153 Identities=24% Similarity=0.290 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCH----------H--HHHH-HHHHHHH--
Q ss_conf 76357889889426899999998589989999807626012466700221122----------4--8999-9986303--
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK----------G--HLVR-EIDALDG-- 67 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~ak----------g--~L~~-Ei~aLgg-- 67 (626)
.-+|||+|||+|.||+-||+++++.|++|+|++-..-. .=.++-+-||++. + .... -+.+=++
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~--~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~ 80 (566)
T PRK06452 3 KLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPT--RSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLV 80 (566)
T ss_pred EEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 68707899997499999999998779978999788999--9753686682068635799999899999999998546888
Q ss_pred ---HHHHHHHHHHHHHHHHCC-----CCCC----C-----CCC-HHH--HHHHHHH--HHHHHHHHHCCCCCEEEHH-HH
Q ss_conf ---999999886314887307-----8785----5-----534-678--7849999--9999999970899689800-10
Q gi|254780808|r 68 ---LMGRVADAAGIQFRVLNV-----KKGP----A-----VRG-PRT--QADRELY--RLAMQREILSQENLDVIQG-EV 124 (626)
Q Consensus 68 ---~m~~~aD~~~i~~r~ln~-----skGp----A-----v~a-lra--qvDR~~f--s~~vt~~l~~~pni~i~~~-eV 124 (626)
++-..++.+.--.+.|.. ++-| + +++ +|. ..|+... -..+.+.+. ..+|++... .|
T Consensus 81 d~~~v~~l~~~~~~~i~~L~~~Gv~f~r~~dG~~~~~~~gghs~~R~~~~~d~tG~~i~~~l~~~~~-~~~i~~~~~~~~ 159 (566)
T PRK06452 81 DQDAAELLSYKSGEIVELLERWGALFNRQPDGRVALRYFGGQTYPRTRFVGDKTGMALLHTLYERTS-GLNVDFYNEWFA 159 (566)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEEEE
T ss_conf 9999999999899999999983998652899988443347755133574288766899999999986-299789987899
Q ss_pred CCCCCCCCCEEEEEECC---CC--CCCCCCCCCCCCCCC
Q ss_conf 11202588113222035---86--334454333466431
Q gi|254780808|r 125 AGFNTEKNIISSIVMQD---NS--MIRCSTVVLTTGTFL 158 (626)
Q Consensus 125 ~~l~~~~~~~~~v~~~~---g~--~~~~~~viiatGtfl 158 (626)
++|+.+++.+.|+...+ +. .+.+++||+|||-+-
T Consensus 160 ~~Ll~~~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g 198 (566)
T PRK06452 160 WDLVRDEKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMG 198 (566)
T ss_pred EEEEECCCEEEEEEEEECCCCEEEEEECCEEEEECCCCC
T ss_conf 998853986889999976899599998188999178513
No 13
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.30 E-value=1.1e-10 Score=95.54 Aligned_cols=157 Identities=25% Similarity=0.306 Sum_probs=83.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-----CCCCCCCCH---H----HHHHHHHHHHH-
Q ss_conf 9876357889889426899999998589989999807626012466-----700221122---4----89999986303-
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGK---G----HLVREIDALDG- 67 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-----nps~gg~ak---g----~L~~Ei~aLgg- 67 (626)
|+..+|||+|||||.||+=||..+|..|.+|.|++--+-.-+--+| |.+++...+ + |..--+.-.++
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 53211698998784888999999996699579997236889853214565302146665456899899999998743676
Q ss_pred ----HHHHHHHHHHHHHHHHCC-----CCCCC---------C----CCHHHHHHHHHHH--HHHHHHHHCCCCCE-EEHH
Q ss_conf ----999999886314887307-----87855---------5----3467878499999--99999997089968-9800
Q gi|254780808|r 68 ----LMGRVADAAGIQFRVLNV-----KKGPA---------V----RGPRTQADRELYR--LAMQREILSQENLD-VIQG 122 (626)
Q Consensus 68 ----~m~~~aD~~~i~~r~ln~-----skGpA---------v----~alraqvDR~~fs--~~vt~~l~~~pni~-i~~~ 122 (626)
.+...+|.+.--...|++ ++-+. + +++.+ .|+..++ ...-+.+...++++ ..+-
T Consensus 82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~-~~~tG~~ll~~L~~~~~~~~~~~~~~~~ 160 (562)
T COG1053 82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFA-ADKTGHELLHTLYEQLLKFSGIEIFDEY 160 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 789999999986379999999808975447876600234688888763225-6667589999999998763131111002
Q ss_pred HHCCCCCCCCC-EEEEEE-----CCCCCCCCCCCCCCCCCCC
Q ss_conf 10112025881-132220-----3586334454333466431
Q gi|254780808|r 123 EVAGFNTEKNI-ISSIVM-----QDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 123 eV~~l~~~~~~-~~~v~~-----~~g~~~~~~~viiatGtfl 158 (626)
.+++|..+++. +.|+.- ..-..+.+++||+|||-+-
T Consensus 161 ~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 161 FVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred EEHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCE
T ss_conf 102122317985788999954788489981464899338744
No 14
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=2.3e-10 Score=93.21 Aligned_cols=36 Identities=42% Similarity=0.608 Sum_probs=31.5
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876357889889426899999998589989999807
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
|-..+|||+|||+|.||+=||+.+++ |.+|.+++-.
T Consensus 1 ~~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~ 36 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKL 36 (583)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 97431788999962999999997156-9977999788
No 15
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=6.9e-11 Score=96.89 Aligned_cols=35 Identities=40% Similarity=0.604 Sum_probs=32.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 76357889889426899999998589989999807
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
.++|||+|||+|.||+-||+++++.|.+|.|+|..
T Consensus 5 ~~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~ 39 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKV 39 (588)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 75679899995499999999998749938999788
No 16
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.29 E-value=1.1e-10 Score=95.32 Aligned_cols=150 Identities=23% Similarity=0.268 Sum_probs=82.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCCC---CCCC---------HHHHHHHHHHHHH---
Q ss_conf 35788988942689999999858--99899998076260124667002---2112---------2489999986303---
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAI---GGLG---------KGHLVREIDALDG--- 67 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~ael~Cnps~---gg~a---------kg~L~~Ei~aLgg--- 67 (626)
++||+|||+|.||+=||+++++. |++|.|++... ...|+|. ||.+ .-|..--+.+=++
T Consensus 4 ~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~-----~~~s~s~~a~GG~~a~~~~~Ds~e~~~~Dt~~~G~~l~d 78 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY-----PMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCE 78 (582)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 556899996699999999999868998599997899-----899861877612504479999999999999997067888
Q ss_pred --HHHHHHHHHHHHHHHHCC-----CC---C-CCC------CCHHHH--HHHHHHH--HHHHHHHHCCCCCEEEHH-HHC
Q ss_conf --999999886314887307-----87---8-555------346787--8499999--999999970899689800-101
Q gi|254780808|r 68 --LMGRVADAAGIQFRVLNV-----KK---G-PAV------RGPRTQ--ADRELYR--LAMQREILSQENLDVIQG-EVA 125 (626)
Q Consensus 68 --~m~~~aD~~~i~~r~ln~-----sk---G-pAv------~alraq--vDR~~fs--~~vt~~l~~~pni~i~~~-eV~ 125 (626)
++-..++.+.-..+.|.. ++ | .++ ...|+- .|+..+. ..+.+....+++|++... .++
T Consensus 79 ~~lv~~l~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~~~gGhs~~R~~~~~d~tG~~i~~~l~~~~~~~~~i~~~~~~~~~ 158 (582)
T PRK09231 79 QDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQYPQIQRFDEHFVL 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 99999999999999999998499821579987754304871046123358986699999999999856997899759998
Q ss_pred CCCCCCCCEEEEEECC-----CCCCCCCCCCCCCCCCCH
Q ss_conf 1202588113222035-----863344543334664310
Q gi|254780808|r 126 GFNTEKNIISSIVMQD-----NSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 126 ~l~~~~~~~~~v~~~~-----g~~~~~~~viiatGtfl~ 159 (626)
+|+.+++.+.|+...+ -..+.|++||+|||-+-.
T Consensus 159 ~Ll~~dg~v~Ga~~~d~~~G~~~~i~AkaVILATGG~g~ 197 (582)
T PRK09231 159 DILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred EEEECCCEEEEEEEEECCCCCEEEEEECEEEECCCCCCC
T ss_conf 889639808999999889996899973769986788765
No 17
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=6.1e-12 Score=104.34 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=33.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876357889889426899999998589989999807
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
|..++|||+|||+|.||+=||+++++.|++|.|++..
T Consensus 8 ~~~~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~ 44 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8744778899996699999999998769958999788
No 18
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.28 E-value=4.3e-10 Score=91.20 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=81.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCCCCH---------HHHHHHHHHHHH----
Q ss_conf 7635788988942689999999858998999980762601246670--0221122---------489999986303----
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGK---------GHLVREIDALDG---- 67 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg~ak---------g~L~~Ei~aLgg---- 67 (626)
+++|||+|||+|.||+=||+.++.. .+|+|++..+-. .+|- +-||++. -|..-=+.+=+|
T Consensus 6 ~~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~----~g~s~~a~gGi~a~~~~~Ds~e~h~~Dt~~~G~gl~d~ 80 (535)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLS----EGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDE 80 (535)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCC----CCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 7628989999539999999974038-988999788999----97278870853885299999999999999953898899
Q ss_pred -HHHHHHHHH----------HHHHHH-----------HCCCCCC-CCCCHHHHHHH--HHHHHHHHHHHHCCCCCEEEHH
Q ss_conf -999999886----------314887-----------3078785-55346787849--9999999999970899689800
Q gi|254780808|r 68 -LMGRVADAA----------GIQFRV-----------LNVKKGP-AVRGPRTQADR--ELYRLAMQREILSQENLDVIQG 122 (626)
Q Consensus 68 -~m~~~aD~~----------~i~~r~-----------ln~skGp-Av~alraqvDR--~~fs~~vt~~l~~~pni~i~~~ 122 (626)
++-..++.+ ++.|.- |.+.-|- .-+.+.+ .|. ......+.+.+.++|||++.+.
T Consensus 81 ~lv~~l~~~a~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~r~gGhs~~R~~~~-~d~tG~~i~~~L~~~~~~~~~i~~~~~ 159 (535)
T PRK09077 81 DAVRFIAENAREAVQWLIDQGVPFDTDEQPNGEEGYHLTREGGHSHRRILHA-ADATGKAVQTTLVERARNHPNITVLER 159 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999999999999998499565267765442210013578666755215-898689999999999970899789952
Q ss_pred -HHCCCCCCC------CCEEEEEECC---C--CCCCCCCCCCCCCCCC
Q ss_conf -101120258------8113222035---8--6334454333466431
Q gi|254780808|r 123 -EVAGFNTEK------NIISSIVMQD---N--SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 123 -eV~~l~~~~------~~~~~v~~~~---g--~~~~~~~viiatGtfl 158 (626)
.+++|+.++ +.+.|+...+ | ..+.|++||+|||-+-
T Consensus 160 ~~~~~Li~~~~~~~~~~~v~Ga~~~d~~~g~~~~i~AkaVILATGG~g 207 (535)
T PRK09077 160 HNAIDLITSDKLGLPGRRVVGAYVWNRNKERVETIRAKFVVLATGGAS 207 (535)
T ss_pred EEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECEEEEECCCCC
T ss_conf 078899984244566987998999977899389997076999469985
No 19
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=2.6e-11 Score=99.87 Aligned_cols=339 Identities=21% Similarity=0.284 Sum_probs=169.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HC---CCCCCC--CCCC-------CCCHHHHHH-HHHHHHH
Q ss_conf 635788988942689999999858998999980762---60---124667--0022-------112248999-9986303
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TI---GSMSCN--PAIG-------GLGKGHLVR-EIDALDG 67 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~---ael~Cn--ps~g-------g~akg~L~~-Ei~aLgg 67 (626)
+.|||||||||-||--||-++|++|.+|+|+++.+. +| |-==|| |+-- -++-|+-.+ =+++..-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCH
T ss_conf 74218998887889999998864698799980586422136853788743326505899997589820677889872798
Q ss_pred H-HHHHHHHHHHHHHHHCCCCC---CC-CCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECC
Q ss_conf 9-99999886314887307878---55-534678784999999999999708996898-001011202588113222035
Q gi|254780808|r 68 L-MGRVADAAGIQFRVLNVKKG---PA-VRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQD 141 (626)
Q Consensus 68 ~-m~~~aD~~~i~~r~ln~skG---pA-v~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~ 141 (626)
. .....+.-+|.+.+- +.| |- ..|-.. + ..+-..++.. +++|. +-+|.++..++ ....+.+.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~--~~Gr~Fp~sdkA~~I-v------~~ll~~~~~~-gV~i~~~~~v~~v~~~~-~~f~l~t~~ 150 (408)
T COG2081 82 EDFIDWVEGLGIALKEE--DLGRMFPDSDKASPI-V------DALLKELEAL-GVTIRTRSRVSSVEKDD-SGFRLDTSS 150 (408)
T ss_pred HHHHHHHHHCCCEEEEC--CCCEECCCCCCHHHH-H------HHHHHHHHHC-CCEEEECCEEEEEEECC-CEEEEECCC
T ss_conf 99999998659715774--685255786666899-9------9999999975-95898146477676338-558998599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCC
Q ss_conf 863344543334664310134443202332224751113310000-1011200544445441011000013443211478
Q gi|254780808|r 142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD 220 (626)
Q Consensus 142 g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l-~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d 220 (626)
|..+.|.++|+|||-..-. -..|.+....+ ...|.....+.-+.+|..-..+.. ..+......
T Consensus 151 g~~i~~d~lilAtGG~S~P---------------~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~-~~l~gls~~ 214 (408)
T COG2081 151 GETVKCDSLILATGGKSWP---------------KLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFL-ERLAGLSLK 214 (408)
T ss_pred CCEEECCEEEEECCCCCCC---------------CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCCC
T ss_conf 9889804899922886778---------------789984026899975984056866557724787899-874378656
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf 766877743565780000000012320014777640245754144323564222553212335676433-----------
Q gi|254780808|r 221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN----------- 289 (626)
Q Consensus 221 ~~~~~~s~~~~~~~~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p----------- 289 (626)
..+. +....+-...|.+.-.||---....+.+ .|.... . .-..|....-+.-+|+.+
T Consensus 215 ~v~~--~v~~~~g~~~~g~~LfTh~GiSGPavl~----~Ss~~~-----~-~~~~~~~~i~iDllP~~~~~~l~~~l~~~ 282 (408)
T COG2081 215 SVPL--SVTAGKGITFQGDLLFTHRGLSGPAVLQ----LSSYWR-----L-LEKKGGATLSIDLLPDVDAEELLRELRRA 282 (408)
T ss_pred CEEE--EEECCCCCEEECCEEEEECCCCHHHHHH----HHHHHH-----H-HCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5378--9844888133045679805776799999----999998-----7-41289826999648999999999999765
Q ss_pred -----------------CCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHH----------HHHCCEEEECCHHH
Q ss_conf -----------------452013015787764543477666898899999987543----------40010011000121
Q gi|254780808|r 290 -----------------GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG----------LEKVNIIRPGYAIE 342 (626)
Q Consensus 290 -----------------~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPG----------LEnAef~R~Gy~ie 342 (626)
..++.|++.+. +..-.-.|.+.++.++...|.. +++|+..-=| |.
T Consensus 283 ~~~kslkn~L~~~lp~rlv~~~l~~~~i------~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GG--V~ 354 (408)
T COG2081 283 NPKKSLKNALAKLLPKRLVEFLLERAGI------PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGG--VD 354 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCHHHCCHHHHHHHHHHHHCCEEECCCCCCCCEEEEECCC--EE
T ss_conf 8556899999877326799999985357------874256559888999999975474433687654415774483--31
Q ss_pred HCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHH------HHHHHHHHHHHHHHHHC
Q ss_conf 1023545656776540334156621330433466------66667789999987420
Q gi|254780808|r 343 YDYINPKELFPTLETKKISGLFLAGQINGTTGYE------EAAAQGLVAGINSARKS 393 (626)
Q Consensus 343 yd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYe------EAAAqGl~AGiNa~~~~ 393 (626)
-+-+||+ ||++|.+|||||||-+=-++||. -|=++|+.||-+++...
T Consensus 355 ~~eid~k----Tmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 355 TKEIDSK----TMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred HHHCCHH----HHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1114877----7776408983887788884057774799999999999998656630
No 20
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.28 E-value=3.3e-09 Score=84.92 Aligned_cols=155 Identities=23% Similarity=0.321 Sum_probs=84.4
Q ss_pred CCCC-----CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHH----HCCCC--CCCCCCCC-CC-HHHHHHHHHHH
Q ss_conf 9876-----3578898894268999999985--8998999980762----60124--66700221-12-24899999863
Q gi|254780808|r 1 MINR-----SYDVIVIGGGHAGCEAAAVAAK--LGASTALITHKTS----TIGSM--SCNPAIGG-LG-KGHLVREIDAL 65 (626)
Q Consensus 1 m~~~-----~~dViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~~----~~ael--~Cnps~gg-~a-kg~L~~Ei~aL 65 (626)
|||- ++||+|||+|.||+=||+.+++ .|++|+|++-.+- ..|+= -+|..++- .. .-|...-+.+.
T Consensus 2 ~~~~~~~~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~~Sg~~A~G~~~i~a~~~~~ds~e~~~~~~~~~~ 81 (610)
T PRK06854 2 MMNPEVVEVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANIDRSGAVAQGLSAINTYIGEENTPEDYVDYVRNDL 81 (610)
T ss_pred CCCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99984578876999999769999999999877899979999899999643899999999850789999999999999851
Q ss_pred HHH--------HHHH-------HHHHHHHHHHHCCCCCC-CCCCHHH-HHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCC
Q ss_conf 039--------9999-------98863148873078785-5534678-78499999999999970899689800-10112
Q gi|254780808|r 66 DGL--------MGRV-------ADAAGIQFRVLNVKKGP-AVRGPRT-QADRELYRLAMQREILSQENLDVIQG-EVAGF 127 (626)
Q Consensus 66 gg~--------m~~~-------aD~~~i~~r~ln~skGp-Av~alra-qvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l 127 (626)
.|+ |.+. -+.-+++|-- ...|. +-.+-|. -+.-..+...+.+.+...++|+|.+. .+++|
T Consensus 82 ~gl~d~~~v~~~~~~~~~~i~~L~~~Gv~f~r--~~~G~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~i~i~e~~~~~dL 159 (610)
T PRK06854 82 MGIVREDLVYDLARHVDSSVHLFEEWGLPIWK--DDEGKYVRRGKWQIMINGESYKPIVAEAAKKALADNIYNRVFIVDL 159 (610)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEEEECCCEECCCCHHHHHHHHHHHHCCCCCEEECCEEEEEE
T ss_conf 57845999999999889999999977998650--9999887334866632889999999999965799889851687888
Q ss_pred CCCCC---CEEEEEE---CCC--CCCCCCCCCCCCCCC
Q ss_conf 02588---1132220---358--633445433346643
Q gi|254780808|r 128 NTEKN---IISSIVM---QDN--SMIRCSTVVLTTGTF 157 (626)
Q Consensus 128 ~~~~~---~~~~v~~---~~g--~~~~~~~viiatGtf 157 (626)
+.+++ +++|+.. ..| ..+.|++||+|||-.
T Consensus 160 l~~~~~~~r~~Ga~~~d~~~g~~~~~~AkaVILATGG~ 197 (610)
T PRK06854 160 LVDDNKPNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 197 (610)
T ss_pred EEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCC
T ss_conf 66089777599999996168918999702799804775
No 21
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=2.4e-10 Score=93.01 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=32.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 63578898894268999999985899899998076
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
.++||+|||+|.||+=||+++++.|.+|.|++..+
T Consensus 2 ~~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~ 36 (589)
T PRK08641 2 AKKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 86878998986999999999987599779997778
No 22
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.26 E-value=1.6e-10 Score=94.22 Aligned_cols=153 Identities=24% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCCH--H---------HHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076260124667002---21122--4---------89999986303
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLGK--G---------HLVREIDALDG 67 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~ak--g---------~L~~Ei~aLgg 67 (626)
...+|||+|||+|.||+=||+.+++.|.+|+|+|-.+ ...|||+ ||++. | |.--=|.+=++
T Consensus 31 ~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~-----~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlkaG~~ 105 (622)
T PTZ00139 31 IDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLF-----PTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW 105 (622)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-----CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 5776587999966999999999997699089997889-----99974899987787406789999989999999986268
Q ss_pred -----HHHHHHHHHHHHHHHHCC--------CC---------------CCCCCCHHH--HHHHHHH--HHHHHHHHHCCC
Q ss_conf -----999999886314887307--------87---------------855534678--7849999--999999997089
Q gi|254780808|r 68 -----LMGRVADAAGIQFRVLNV--------KK---------------GPAVRGPRT--QADRELY--RLAMQREILSQE 115 (626)
Q Consensus 68 -----~m~~~aD~~~i~~r~ln~--------sk---------------GpAv~alra--qvDR~~f--s~~vt~~l~~~p 115 (626)
++-..++.+.--.+.|.. .- +...++.|+ -.|+... -..+......+.
T Consensus 106 l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~ 185 (622)
T PTZ00139 106 LGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQSLQYN 185 (622)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 77999999999989999999997799722579987812156772034667874157887578619999999999998659
Q ss_pred CCEEEHHHHCCCCC-CCCCEEEEEEC---CCC--CCCCCCCCCCCCCCCH
Q ss_conf 96898001011202-58811322203---586--3344543334664310
Q gi|254780808|r 116 NLDVIQGEVAGFNT-EKNIISSIVMQ---DNS--MIRCSTVVLTTGTFLR 159 (626)
Q Consensus 116 ni~i~~~eV~~l~~-~~~~~~~v~~~---~g~--~~~~~~viiatGtfl~ 159 (626)
...+.+-.+++|+. +++.+.|+... .|. .+.|++||+|||-|-.
T Consensus 186 i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~ 235 (622)
T PTZ00139 186 CNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGR 235 (622)
T ss_pred CEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCC
T ss_conf 97999889999997589959999999778990999971369987787543
No 23
>PRK08275 putative oxidoreductase; Provisional
Probab=99.23 E-value=1e-10 Score=95.65 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHH-HCCCCCCCCCCCCCC----------HHHHHHHHHHHHHH---
Q ss_conf 35788988942689999999858--998999980762-601246670022112----------24899999863039---
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTS-TIGSMSCNPAIGGLG----------KGHLVREIDALDGL--- 68 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~-~~ael~Cnps~gg~a----------kg~L~~Ei~aLgg~--- 68 (626)
++||+|||+|.||+-||+.+++. |++|.|++-.+- .-+ ++..+.||++ ..|+.--+.+=+|+
T Consensus 9 ~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~sg--~~~~~~~g~~~~~~~~~~~~e~~~~dt~~ag~gl~d~ 86 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSG--AISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 72889999719999999999986898979999799989881--7999988888734689999999999999853898779
Q ss_pred --HHHHHHHHHHHHHHHCC-----CC---C-CCCCC----HH-H--HHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCC
Q ss_conf --99999886314887307-----87---8-55534----67-8--784999999999999708996898001-011202
Q gi|254780808|r 69 --MGRVADAAGIQFRVLNV-----KK---G-PAVRG----PR-T--QADRELYRLAMQREILSQENLDVIQGE-VAGFNT 129 (626)
Q Consensus 69 --m~~~aD~~~i~~r~ln~-----sk---G-pAv~a----lr-a--qvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~ 129 (626)
.-..++++.--.+.|.. ++ | .+++. .+ + ...-......+.+.+.++ +|.+.+.. +++|+.
T Consensus 87 ~~v~~lv~~a~~~i~~L~~~Gv~f~r~~~G~~~~~~~~~~~~~~~~~~~G~~i~~~l~~~~~~~-~i~i~~~~~~~~Ll~ 165 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRA-RVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEEEEEE
T ss_conf 9999999989999999997699877389998600110367764321698699999999999865-996998799999998
Q ss_pred C-CCCEEEEEEC---CC--CCCCCCCCCCCCCCC
Q ss_conf 5-8811322203---58--633445433346643
Q gi|254780808|r 130 E-KNIISSIVMQ---DN--SMIRCSTVVLTTGTF 157 (626)
Q Consensus 130 ~-~~~~~~v~~~---~g--~~~~~~~viiatGtf 157 (626)
+ ++++.|+... .| ..+.|++||+|||-+
T Consensus 166 d~dGrv~Ga~~~d~~~g~~~~~~AkaVVLATGG~ 199 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred CCCCEEEEEEEEECCCCEEEEEECCCEEEECCCC
T ss_conf 5899399999994479839999338279915764
No 24
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.20 E-value=2.7e-10 Score=92.70 Aligned_cols=142 Identities=25% Similarity=0.358 Sum_probs=79.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC------CCCCCC--CCCCC-------CCHHH-HHHHHHHHHHH-
Q ss_conf 578898894268999999985899899998076260------124667--00221-------12248-99999863039-
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI------GSMSCN--PAIGG-------LGKGH-LVREIDALDGL- 68 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~------ael~Cn--ps~gg-------~akg~-L~~Ei~aLgg~- 68 (626)
|||+|||||-||.-||..+|+.|.+|.|+|.++.-- |-==|| |+.-- ...+. |..=+..++-.
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d 80 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD 80 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH
T ss_conf 97999996699999999998689959999589987501588268961407899979998625775799999998489999
Q ss_pred HHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 99999886314887307878---5553467878499999999999970899689-8001011202588113222035863
Q gi|254780808|r 69 MGRVADAAGIQFRVLNVKKG---PAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSM 144 (626)
Q Consensus 69 m~~~aD~~~i~~r~ln~skG---pAv~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~~~~g~~ 144 (626)
+...-..-+|.+++- ..| |.-. +|+-=.+ .++..+.. .++++ .+.+|++|..+++....+.+ .+..
T Consensus 81 ~~~ff~~~Gl~~~~e--~~GrvfP~s~--~A~~Vl~----~L~~~l~~-~gV~i~~~~~V~~I~~~~~~~~~v~~-~~~~ 150 (405)
T pfam03486 81 FIAWFEELGVPLKEE--DHGRLFPVSD--KASDIVD----ALLNELKE-LGVKIRTRTRVLSVEKDDDGRFRVDT-GGEE 150 (405)
T ss_pred HHHHHHHCCCEEEEC--CCCEEECCCC--CHHHHHH----HHHHHHHH-CCCEEEECCEEEEEEECCCCEEEEEE-CCCE
T ss_conf 999999779905977--8997978989--8699999----99999997-79789958887899975994599994-8958
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3445433346643
Q gi|254780808|r 145 IRCSTVVLTTGTF 157 (626)
Q Consensus 145 ~~~~~viiatGtf 157 (626)
+.++.||+|||-.
T Consensus 151 ~~a~~vIlAtGG~ 163 (405)
T pfam03486 151 LEADSLVLATGGL 163 (405)
T ss_pred EEECEEEEECCCC
T ss_conf 9727899904886
No 25
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=4.7e-10 Score=90.92 Aligned_cols=156 Identities=20% Similarity=0.264 Sum_probs=82.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHH----HC-C--CC--CCCCCCCCCCH-HHHHHHHHHHHH-
Q ss_conf 87635788988942689999999858---998999980762----60-1--24--66700221122-489999986303-
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTS----TI-G--SM--SCNPAIGGLGK-GHLVREIDALDG- 67 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~---G~~v~L~~~~~~----~~-a--el--~Cnps~gg~ak-g~L~~Ei~aLgg- 67 (626)
-.-+|||+|||+|.||+=||+.+++. |++|+|++.-+- .+ | -+ +++|.--+.-. -|..-=+.+-++
T Consensus 2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~l 81 (582)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDFL 81 (582)
T ss_pred CEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 77870689999739999999999985389986999979899997089998779987178889999899999999853688
Q ss_pred ----HHHHHHHHHHHHHHHHCC-----CC---C-----C-CCC----CHHHHHHHHH--HHHHHHHHHHCCCCCEEEHH-
Q ss_conf ----999999886314887307-----87---8-----5-553----4678784999--99999999970899689800-
Q gi|254780808|r 68 ----LMGRVADAAGIQFRVLNV-----KK---G-----P-AVR----GPRTQADREL--YRLAMQREILSQENLDVIQG- 122 (626)
Q Consensus 68 ----~m~~~aD~~~i~~r~ln~-----sk---G-----p-Av~----alraqvDR~~--fs~~vt~~l~~~pni~i~~~- 122 (626)
++-..++.+.--.+.|-. .| | + .++ +.++ .|+.. ....+.+.+..+++|++...
T Consensus 82 ~d~~lv~~l~~~a~~~v~~le~~Gv~f~r~~~G~~~~~~~gGhs~~R~~~~-~d~tG~~i~~~l~~~~~~~~gv~~~~~~ 160 (582)
T PRK06069 82 ADQDAVEVLVREAPEEIRFLDHWGVPWSRDPDGRISQRPFGGMSFPRTTFA-ADKTGFYIMSTLYSRALRFDNIHFYHEH 160 (582)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCEEECC-CCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 889999999998999999999769971068999887521587034500036-7875399999999999846994899778
Q ss_pred HHCCCCCCCCCEEEEEECC---C--CCCCCCCCCCCCCCCC
Q ss_conf 1011202588113222035---8--6334454333466431
Q gi|254780808|r 123 EVAGFNTEKNIISSIVMQD---N--SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 123 eV~~l~~~~~~~~~v~~~~---g--~~~~~~~viiatGtfl 158 (626)
.+++|+.+++.+.|+...+ | ..+.|++||+|||-+-
T Consensus 161 ~vt~Ll~~~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g 201 (582)
T PRK06069 161 FVTSLIVENGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAG 201 (582)
T ss_pred EEEEEEECCCEEEEEEEEECCCCEEEEEEECEEEECCCCCC
T ss_conf 98888743998999999976898299998255998988675
No 26
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=2.2e-10 Score=93.31 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=77.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH-HH----C---CCCCCCCCCC-CCCHHHHHHHH-HHHHH-----
Q ss_conf 357889889426899999998589--9899998076-26----0---1246670022-11224899999-86303-----
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKT-ST----I---GSMSCNPAIG-GLGKGHLVREI-DALDG----- 67 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~-~~----~---ael~Cnps~g-g~akg~L~~Ei-~aLgg----- 67 (626)
++||+|||+|.|||=||+.+++.| ++|+|++... .. . |.-.|+..+. +.-.-....++ .+-++
T Consensus 3 e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 08989999659999999999987899829999788999972688878899884379999899999999998646888899
Q ss_pred HHHHHHHHHHHHHHHHCC-----CCCC---------CCCC-HHH--HHHHHH--HHHHHHHHHHCCCCCEEEH-HHHCCC
Q ss_conf 999999886314887307-----8785---------5534-678--784999--9999999997089968980-010112
Q gi|254780808|r 68 LMGRVADAAGIQFRVLNV-----KKGP---------AVRG-PRT--QADREL--YRLAMQREILSQENLDVIQ-GEVAGF 127 (626)
Q Consensus 68 ~m~~~aD~~~i~~r~ln~-----skGp---------Av~a-lra--qvDR~~--fs~~vt~~l~~~pni~i~~-~eV~~l 127 (626)
++-..++.+.--.+.|.. +|-+ .+++ +|+ -.|+.. .-..+.+.+..+ +|++.. -.|++|
T Consensus 83 lv~~l~~~~~~~v~~Le~~Gv~f~r~~dG~~~~~~~gGhs~~R~~~~~~~tG~~i~~~L~~~~~~~-gv~i~~~~~v~~L 161 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRY-GVTIYDEWYVMRL 161 (575)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEEEE
T ss_conf 999999999999999998699776088988801103671025554568883999999999998546-9789941788889
Q ss_pred CCCCCCEEEEEE---CCC--CCCCCCCCCCCCCCCCH
Q ss_conf 025881132220---358--63344543334664310
Q gi|254780808|r 128 NTEKNIISSIVM---QDN--SMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 128 ~~~~~~~~~v~~---~~g--~~~~~~~viiatGtfl~ 159 (626)
+.+++.+.|+.. ..| ..+.|++||+|||-|-.
T Consensus 162 l~~dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 162 ILEENEAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCCC
T ss_conf 8709978999999716883899989989989999877
No 27
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=3.8e-10 Score=91.61 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=77.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC-CCCCC------CH---HHHHHHHHHHHH-----HH
Q ss_conf 35788988942689999999858998999980762601246670-02211------22---489999986303-----99
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP-AIGGL------GK---GHLVREIDALDG-----LM 69 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp-s~gg~------ak---g~L~~Ei~aLgg-----~m 69 (626)
++||+|||+|.|||=||+.+++.| +|.|++-..-.- =.|+. +-||+ .- -|+.-=+.+-++ ++
T Consensus 7 ~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~--sG~s~~a~gg~~a~~~~~Ds~e~~~~Dt~~~g~~l~d~~lv 83 (539)
T PRK06263 7 ITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGK--SGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (539)
T ss_pred ECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCC--CCCHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 649899995399999999998259-979997789899--98478886677150899999999999999852688889999
Q ss_pred HHHHHHHHHHHHHHCC--------CCC-----CC-CCC-HHH--HHHHH--HHHHHHHHHHHCCCCCEEEH-HHHCCCCC
Q ss_conf 9999886314887307--------878-----55-534-678--78499--99999999997089968980-01011202
Q gi|254780808|r 70 GRVADAAGIQFRVLNV--------KKG-----PA-VRG-PRT--QADRE--LYRLAMQREILSQENLDVIQ-GEVAGFNT 129 (626)
Q Consensus 70 ~~~aD~~~i~~r~ln~--------skG-----pA-v~a-lra--qvDR~--~fs~~vt~~l~~~pni~i~~-~eV~~l~~ 129 (626)
-..++.+.--.+.|-. ..| |. +++ +|. ..|+. .+...+.+.+... +|++.. -.+++|+.
T Consensus 84 ~~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s~~R~~~~~~~tG~~i~~~L~~~~~~~-gv~i~~~~~~~~Ll~ 162 (539)
T PRK06263 84 EILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKE-RIKILEEVMAIKLLV 162 (539)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEEEEEEE
T ss_conf 9999999999999998399851279986731004785444322357766199999999998616-977995159999998
Q ss_pred C-CCCEEEEEEC---CC--CCCCCCCCCCCCCCCC
Q ss_conf 5-8811322203---58--6334454333466431
Q gi|254780808|r 130 E-KNIISSIVMQ---DN--SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 130 ~-~~~~~~v~~~---~g--~~~~~~~viiatGtfl 158 (626)
+ ++.+.|+... .| ..+.|++||+|||-+-
T Consensus 163 ~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 197 (539)
T PRK06263 163 DELGKVFGAVFLDLRNGDIVPIYAKSTILATGGAG 197 (539)
T ss_pred CCCCEEEEEEEEECCCCEEEEEEECEEEECCCCCC
T ss_conf 17996999999977898299996056998989876
No 28
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.10 E-value=2.6e-11 Score=99.93 Aligned_cols=141 Identities=22% Similarity=0.319 Sum_probs=85.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9876357889889426899999998589989999807626012466700221122489999986303999999886----
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA---- 76 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~---- 76 (626)
|...+|||||||||.||+=||+.+||.|.+|+|+|-. +-.+.=.|+- |.--.+-+.|+ +.-..+.+
T Consensus 1 m~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg-~~pG~k~~sG---~~l~~~~l~~l------iP~~~~~aP~er 70 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERG-NSAGAKNVTG---GRLYAHSLEHI------IPGFADSAPVER 70 (428)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCC---CEECCCHHHHH------CCCCHHCCCCCE
T ss_conf 9887577899996889999999998789909999678-8899876117---54052068886------878410298624
Q ss_pred --------------H--HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEE
Q ss_conf --------------3--148873078785553467878499999999999970899689800-10112025881132220
Q gi|254780808|r 77 --------------G--IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVM 139 (626)
Q Consensus 77 --------------~--i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~ 139 (626)
. +.|+-.+..+.+-. .-+|.|..|-+.+-+.-++. ..+|+.+ .|+++..++++++||.+
T Consensus 71 ~V~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~y~V~R~~FD~wLa~~Ae~a-GA~i~~g~~V~~li~~~GrVvGV~~ 146 (428)
T PRK10157 71 LITHEKLAFMTEKSAMTMDYCNGDETSPSQR---SYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVEA 146 (428)
T ss_pred EEEEEEEEEECCCCCEECCCCCCCCCCCCCC---CEEEEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEECCEEEEEEC
T ss_conf 7898689998689845567778775668876---18989999999999999980-9889868581001434897999975
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 35863344543334664
Q gi|254780808|r 140 QDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 140 ~~g~~~~~~~viiatGt 156 (626)
+|..+.|+.||.|.|-
T Consensus 147 -~G~~i~A~vVI~AdGv 162 (428)
T PRK10157 147 -DGDVIEAKTVILADGV 162 (428)
T ss_pred -CCCEEEEEEEEEECCC
T ss_conf -8958987179994472
No 29
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.10 E-value=3.1e-10 Score=92.20 Aligned_cols=136 Identities=27% Similarity=0.404 Sum_probs=77.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHH-----HHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076--260124667002211224899-----999863039999998
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV-----REIDALDGLMGRVAD 74 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~-----~Ei~aLgg~m~~~aD 74 (626)
|.++|||+|||||-||..||+.+|++|.+|+|+|-.. -++-.--|=|| |.++. +.++.+.+ .+
T Consensus 1 M~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~GGtC~n~GCiPs-----K~l~~~a~~~~~~~~~~~-----~~ 70 (464)
T PRK05976 1 MAKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPS-----KALIHSAEVFHTAKKFAG-----AS 70 (464)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCH-----HHHHHHHHHHHHHHHHCC-----CC
T ss_conf 99718899999788999999999978992999978997971363683147-----999999999999865211-----10
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHH----HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC--CCCCCCCC
Q ss_conf 86314887307878555346787849----9999999999970899689800101120258811322203--58633445
Q gi|254780808|r 75 AAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIRCS 148 (626)
Q Consensus 75 ~~~i~~r~ln~skGpAv~alraqvDR----~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~--~g~~~~~~ 148 (626)
..++. ..+++..-.+++.-+ +.++..+.+.++. .+|++++++..=+ ... .+.|.+. .+..+.++
T Consensus 71 ~~gi~------~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~-~~v~~i~G~a~f~-~~~--~v~V~~~~g~~~~i~a~ 140 (464)
T PRK05976 71 PLGIS------VQAPALDFAKVQAWKDGIVDRLTKGVAALLKK-GKVDVFHGIGRIL-DGK--TVSVETATGENEMIIPE 140 (464)
T ss_pred CCCEE------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEC-CCC--CEEEECCCCCCEEEEEC
T ss_conf 05354------56765389999999999999987889999986-8928997268865-898--11444278873699826
Q ss_pred CCCCCCCCC
Q ss_conf 433346643
Q gi|254780808|r 149 TVVLTTGTF 157 (626)
Q Consensus 149 ~viiatGtf 157 (626)
.+|||||.-
T Consensus 141 ~iIIATGs~ 149 (464)
T PRK05976 141 NLLIATGSR 149 (464)
T ss_pred EEEECCCCC
T ss_conf 699876888
No 30
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.07 E-value=2.8e-09 Score=85.42 Aligned_cols=159 Identities=16% Similarity=0.312 Sum_probs=89.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCC----------C--CHHHHHHHHHHHHH--
Q ss_conf 7635788988942689999999858998999980762601246-6700221----------1--22489999986303--
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGG----------L--GKGHLVREIDALDG-- 67 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg----------~--akg~L~~Ei~aLgg-- 67 (626)
..+|||+|||+|.||.=||+.+|+.|++|+|+|..+-.=|-.. |+-.+.+ + -.-....|+-..++
T Consensus 58 ~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~~ 137 (506)
T PRK06481 58 KDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 137 (506)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 69846799898899999999999889978999689999951888558845269999997389999999999999734888
Q ss_pred ----HHHHHHHHHHHHHHHHC----------CCCCCCCCCHHHHHHHH----HHHHHHHHHHHCCCCCEE-EHHHHCCCC
Q ss_conf ----99999988631488730----------78785553467878499----999999999970899689-800101120
Q gi|254780808|r 68 ----LMGRVADAAGIQFRVLN----------VKKGPAVRGPRTQADRE----LYRLAMQREILSQENLDV-IQGEVAGFN 128 (626)
Q Consensus 68 ----~m~~~aD~~~i~~r~ln----------~skGpAv~alraqvDR~----~fs~~vt~~l~~~pni~i-~~~eV~~l~ 128 (626)
++-..+|.++--..+|. .+.|..+....-..|-. .+...+.+.++.. ++++ .+-.|++|.
T Consensus 138 ~d~~l~~~~~~~s~~~idWl~~~G~~~~~~~~~g~~~~~~~~~~~~g~~~g~~lv~~l~~~~~~~-gv~i~~~t~~~~L~ 216 (506)
T PRK06481 138 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVNADVTKIT 216 (506)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC-CCEEEECCEEEEEE
T ss_conf 88999999998389999999975984666766788776703434887647999999999999877-98799877832323
Q ss_pred CCCCCEEEEEEC--CC--CCCCCCCCCCCCCCCCHHHH
Q ss_conf 258811322203--58--63344543334664310134
Q gi|254780808|r 129 TEKNIISSIVMQ--DN--SMIRCSTVVLTTGTFLRGVI 162 (626)
Q Consensus 129 ~~~~~~~~v~~~--~g--~~~~~~~viiatGtfl~g~~ 162 (626)
.++++|+||... .+ ..+.+++||||||-|-+..=
T Consensus 217 ~~dG~V~GV~~~~~~g~~~~i~akaVILATGGf~~N~e 254 (506)
T PRK06481 217 EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKK 254 (506)
T ss_pred ECCCCEEEEEEEECCCEEEEEECCEEEECCCCCCCCHH
T ss_conf 05893789999968984999973569997788776799
No 31
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=6.4e-09 Score=82.92 Aligned_cols=149 Identities=22% Similarity=0.256 Sum_probs=83.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC------------HHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998076260124667002---2112------------24899999863039
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG------------KGHLVREIDALDGL 68 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a------------kg~L~~Ei~aLgg~ 68 (626)
++|||+|||+|.||+=||+++|+.|.+|.+++.+..- + .+||+ ||++ ..|..--|.+=+++
T Consensus 32 ~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~~~---~-~snS~~AqGGInAa~~~~~~~DS~e~H~~DTlkaG~gl 107 (638)
T PRK07573 32 RKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQDSP---R-RAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFR 107 (638)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC---C-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6488899996699999999999749956999922899---9-62088875556740468999989899999999862787
Q ss_pred -----HHHHHHHHHHHHHHHC----------------CCCC----C----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf -----9999988631488730----------------7878----5----553467878499999999999970899689
Q gi|254780808|r 69 -----MGRVADAAGIQFRVLN----------------VKKG----P----AVRGPRTQADRELYRLAMQREILSQENLDV 119 (626)
Q Consensus 69 -----m~~~aD~~~i~~r~ln----------------~skG----p----Av~alraqvDR~~fs~~vt~~l~~~pni~i 119 (626)
+-..++++.--.+.|. +.-| | |..+...++=..+|+.-.++ + ..+||++
T Consensus 108 ~d~~~V~~l~~~ap~~I~~L~~~Gv~Fdr~~~g~l~~~~~GGhS~~Ri~ha~d~TG~~i~~~l~~~L~~~-~-~~~~I~~ 185 (638)
T PRK07573 108 AREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYSALSRQ-I-AAGTVEL 185 (638)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH-H-HCCCCEE
T ss_conf 7499999999988999999997599875689986604456676652477328961689999999999998-7-3389889
Q ss_pred EH-HHHCCCCCCCCCEEEEEECC---C--CCCCCCCCCCCCCCCC
Q ss_conf 80-01011202588113222035---8--6334454333466431
Q gi|254780808|r 120 IQ-GEVAGFNTEKNIISSIVMQD---N--SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 120 ~~-~eV~~l~~~~~~~~~v~~~~---g--~~~~~~~viiatGtfl 158 (626)
.. -.|.+|+.+++.+.|+...+ | ..+.+++||||||-+-
T Consensus 186 ~~~~~~~dLi~~dg~~~Gv~~~d~~~G~~~~~~AkaVILATGG~g 230 (638)
T PRK07573 186 FTRTEMLDLVVVDGRARGIVARNLVTGEIERHAADAVVLATGGYG 230 (638)
T ss_pred EECEEEEEEEEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCC
T ss_conf 935799998998999999999965899489997167998578575
No 32
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.05 E-value=3.3e-09 Score=84.91 Aligned_cols=148 Identities=23% Similarity=0.330 Sum_probs=82.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC---CCCCCH------H--HHHHH-HHHHHH--
Q ss_conf 876357889889426899999998589989999807626012466700---221122------4--89999-986303--
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA---IGGLGK------G--HLVRE-IDALDG-- 67 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps---~gg~ak------g--~L~~E-i~aLgg-- 67 (626)
|.++|||+|||+|.||+=||+++++ +.+|.|++..+- ..++| -||++. + +.+.+ +.+=+|
T Consensus 7 ~~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~-----~~g~s~~a~GGi~a~~~~~Ds~e~h~~Dt~kaG~gl~ 80 (556)
T PRK07395 7 LPSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTL-----KTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC 80 (556)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC-----CCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 8865978999963999999997235-998899989999-----9962667636051727999999999999999558888
Q ss_pred ---HHHHHHH----------HHHHHHHHHCCCCC-C-----CCC-CHHHH--HHH--HHHHHHHHHHHHCCCCCEEEHH-
Q ss_conf ---9999998----------86314887307878-5-----553-46787--849--9999999999970899689800-
Q gi|254780808|r 68 ---LMGRVAD----------AAGIQFRVLNVKKG-P-----AVR-GPRTQ--ADR--ELYRLAMQREILSQENLDVIQG- 122 (626)
Q Consensus 68 ---~m~~~aD----------~~~i~~r~ln~skG-p-----Av~-alraq--vDR--~~fs~~vt~~l~~~pni~i~~~- 122 (626)
++-..++ .-++.|. +..| . +++ .+|.- .|+ ..+.+.+.+.+..++||++...
T Consensus 81 d~~~v~~l~~~a~~~i~~L~~~Gv~f~---r~~~~~~~~~~gghs~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~i~~~~ 157 (556)
T PRK07395 81 DPEAVRFLVEQAPEAIASLVELGVAFD---RHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLERPNIEIISQA 157 (556)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCE---ECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899999999999999999997699705---57994400121686666124457775589999999999967995698889
Q ss_pred HHCCCCCC--CCCEEEEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf 10112025--881132220358---6334454333466431
Q gi|254780808|r 123 EVAGFNTE--KNIISSIVMQDN---SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 123 eV~~l~~~--~~~~~~v~~~~g---~~~~~~~viiatGtfl 158 (626)
.+++|..+ ++.+.|+..... ..+.|++||+|||-+-
T Consensus 158 ~~~~Ll~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~g 198 (556)
T PRK07395 158 LALDLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 198 (556)
T ss_pred EEEEEEEECCCCEEEEEEEEECCCEEEEECCEEEECCCCCC
T ss_conf 99999995589879999999899699997898998999871
No 33
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.01 E-value=4.8e-09 Score=83.80 Aligned_cols=138 Identities=29% Similarity=0.431 Sum_probs=79.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 763578898894268999999985899899998076--260124667002211224899999863039999998863148
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
.++|||+|||||.||-.||+.+||.|.+|+|+|-.+ -++-.--|-|| |-++ .-.+... .+.. .+..++..
T Consensus 1 M~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GGtC~~~GCiPs-----K~l~-~~a~~~~-~~~~-~~~~gi~~ 72 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCMPS-----KALI-AAAEAFH-EAKH-AAKFGIHV 72 (460)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHH-----HHHH-HHHHHHH-HHHH-HHHCCCCC
T ss_conf 9816989999778999999999969790999958998861050571515-----9999-9999999-9975-34148666
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 8730787855534678784999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
. ..-.++++.. |.+--.+.+...+.+.+...+++++++++..=+ +++. +....+..+.++.+|||||.
T Consensus 73 ~--~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~--~~~~---v~v~~~~~i~a~~vIIATGs 140 (460)
T PRK06292 73 D--PKIDGKKVMA-RVRSERDRFVGGVVEGLEKKPKIDKIKGTARFI--DPNT---VEVGNGEEIEAKNIVIATGS 140 (460)
T ss_pred C--CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCCE---EEECCCEEEEECEEEEECCC
T ss_conf 7--8409999999-999999998656899997338819998489963--7988---99789779961589996089
No 34
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.00 E-value=6.9e-09 Score=82.65 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCHHH------CC----CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998-07626------01----2466700221122489999986303999
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTST------IG----SMSCNPAIGGLGKGHLVREIDALDGLMG 70 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~-~~~~~------~a----el~Cnps~gg~akg~L~~Ei~aLgg~m~ 70 (626)
|.-+|||+|||||.||-.||+.+|++|.+|+|+| -+|++ +| --=|=|| |-++.. -.+...+-
T Consensus 38 ~~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPS-----K~L~~a--a~~~~~~~ 110 (541)
T PTZ00052 38 LTYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPK-----KLMHYA--GLMGSSFK 110 (541)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHH-----HHHHHH--HHHHHHHH
T ss_conf 78779989999788999999999988990999942455666871779501178362899-----999999--99999997
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-C-CHHHHHH--HHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEE-EEECC--CC
Q ss_conf 999886314887307878555-3-4678784--9999999999997089968980010112025881132-22035--86
Q gi|254780808|r 71 RVADAAGIQFRVLNVKKGPAV-R-GPRTQAD--RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISS-IVMQD--NS 143 (626)
Q Consensus 71 ~~aD~~~i~~r~ln~skGpAv-~-alraqvD--R~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~-v~~~~--g~ 143 (626)
.-+...+++. + .+.+ | ++...++ ....+..+...++ ..+++++++...=. +++.+.. +...+ ..
T Consensus 111 ~~~~~~Gi~~-----~-~~~~d~~~l~~~~~~~i~~l~~~~~~~l~-~~~V~~i~G~a~f~--~~~tV~v~~~~~~g~~~ 181 (541)
T PTZ00052 111 LDSQMYGWKT-----S-SLSHEWGKLVETVQSHIRSLNFSYRTGLR-SSNVKYINGLAKLK--DPHTVEYYLKGDNSQEE 181 (541)
T ss_pred HHHHHCCCCC-----C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEEE--CCCEEEEEECCCCCCEE
T ss_conf 5688658327-----8-76316999999999999998888998887-68968998589983--69878998425888527
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 33445433346643
Q gi|254780808|r 144 MIRCSTVVLTTGTF 157 (626)
Q Consensus 144 ~~~~~~viiatGtf 157 (626)
.+.++.+|||||.-
T Consensus 182 ~i~a~~iIIATGS~ 195 (541)
T PTZ00052 182 TITSKYILIATGCR 195 (541)
T ss_pred EEEEEEEEECCCCC
T ss_conf 99952799857888
No 35
>PRK06370 mercuric reductase; Validated
Probab=99.00 E-value=6.8e-10 Score=89.80 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 763578898894268999999985899899998076--260124667002211224899999863039999998863148
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
.++|||+|||||-||..||..+|+.|.+|+|+|-.+ -++..--|-||---+....+..+++.. ..-++.
T Consensus 2 ~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~GG~Cln~GCiPsK~l~~~a~~~~~~~~~--------~~~g~~- 72 (459)
T PRK06370 2 AQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRA--------AEYGVS- 72 (459)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH--------HCCCCC-
T ss_conf 87175899998889999999999689919999689977432146835289999999999999776--------607922-
Q ss_pred HHHCCCCCCCC--CCHHHHHH--HHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 87307878555--34678784--999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r 81 RVLNVKKGPAV--RGPRTQAD--RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 81 r~ln~skGpAv--~alraqvD--R~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
.+..+.+ .++....| +...+..+...+++.+++++++++..=.. . ..+ ...+..+.++.+|||||.
T Consensus 73 ----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~~-~-~tv----~v~~~~~~a~~iiIATGs 142 (459)
T PRK06370 73 ----IGGPVAVDFKAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFEG-P-NTV----RVGGELLRAKRIFINTGA 142 (459)
T ss_pred ----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-C-CCC----CCCCEEEEEEEEEECCCC
T ss_conf ----588677689999999999998752338988522587299996899715-6-753----569859976289988898
Q ss_pred C
Q ss_conf 3
Q gi|254780808|r 157 F 157 (626)
Q Consensus 157 f 157 (626)
-
T Consensus 143 ~ 143 (459)
T PRK06370 143 R 143 (459)
T ss_pred C
T ss_conf 6
No 36
>PRK06116 glutathione reductase; Validated
Probab=99.00 E-value=1.9e-09 Score=86.67 Aligned_cols=136 Identities=22% Similarity=0.310 Sum_probs=76.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076--26012466700221122489999986303999999886314
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
|.++|||+|||||-||--||..+|+.|.+|+|+|-+. -++..--|-||---+...++.+++...+..++.......+.
T Consensus 1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~~~~~~d 80 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99748889999888999999999968796999937997852541571646999999999999997787558136877528
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 88730787855534678784999----99999999970899689800101120258811322203586334454333466
Q gi|254780808|r 80 FRVLNVKKGPAVRGPRTQADREL----YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155 (626)
Q Consensus 80 ~r~ln~skGpAv~alraqvDR~~----fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatG 155 (626)
|+- ..-.++. .+..+.+.+++ .++++++++..=+ ++..+. ..+..+.++.+|||||
T Consensus 81 ------------~~~-~~~~~~~~i~~l~~~~~~~~~~-~~V~~~~g~a~f~--~~~tv~----v~~~~i~a~~ivIATG 140 (450)
T PRK06116 81 ------------WKK-LIANRDAYIDRLHGSYRRGLEN-NGVDLIEGFARFV--DAHTVE----VNGETYTADHILIATG 140 (450)
T ss_pred ------------HHH-HHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEC--CCCCCC----CCCEEEEEEEEEECCC
T ss_conf ------------999-9999999999999999999876-8968997068872--687403----5982985417999878
Q ss_pred CC
Q ss_conf 43
Q gi|254780808|r 156 TF 157 (626)
Q Consensus 156 tf 157 (626)
.-
T Consensus 141 s~ 142 (450)
T PRK06116 141 GR 142 (450)
T ss_pred CC
T ss_conf 97
No 37
>PRK10015 hypothetical protein; Provisional
Probab=99.00 E-value=9.8e-11 Score=95.80 Aligned_cols=145 Identities=23% Similarity=0.346 Sum_probs=82.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHH---HHH-H--------
Q ss_conf 9876357889889426899999998589989999807626012466700221122489999986---303-9--------
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA---LDG-L-------- 68 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~a---Lgg-~-------- 68 (626)
|...+|||||||||.||+=||+.+|+.|++|+|+|-- +.+|.=.|+ ||.--.+-..|+-- -+. +
T Consensus 1 m~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg-~~~G~k~~s---Ggvl~~~~le~liP~~~~~aP~er~V~~~~ 76 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG-DSAGCKNMT---GGRLYAHTLEAIIPGFAASAPVERKVTREK 76 (429)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCC---CCEECHHHHHHHCCCCCCCCCCCEEEEEEE
T ss_conf 9976158899996889999999998779919999678-879985512---637416278886889644798521589878
Q ss_pred HHHHHHHHHH--HHHHHCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCC
Q ss_conf 9999988631--4887307--87855534678784999999999999708996898001-01120258811322203586
Q gi|254780808|r 69 MGRVADAAGI--QFRVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNS 143 (626)
Q Consensus 69 m~~~aD~~~i--~~r~ln~--skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~ 143 (626)
+.-.++.+++ .|+.... ..-..-.-+|++.||-+-.++. +. ..+|+.+. |++|..++++++||.+.+ .
T Consensus 77 ~~~l~~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae-----~a-Ga~i~~g~~v~~l~~e~g~V~GV~tg~-~ 149 (429)
T PRK10015 77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-----QA-GAQFIPGVRVDALVREGNKVTGVQAGD-D 149 (429)
T ss_pred EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH-----HC-CCEEECCCEEEEEEEECCEEEEEECCC-C
T ss_conf 9998789806667656786766778659899999999999999-----75-999977958999996299899998798-2
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3344543334664
Q gi|254780808|r 144 MIRCSTVVLTTGT 156 (626)
Q Consensus 144 ~~~~~~viiatGt 156 (626)
.+.++.||+|.|-
T Consensus 150 ~l~A~vVI~AdGv 162 (429)
T PRK10015 150 ILEANVVILADGV 162 (429)
T ss_pred EEEEEEEEEECCC
T ss_conf 6886589981562
No 38
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.00 E-value=2e-09 Score=86.48 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=77.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH-----HCCC----CCCCCCCCCCCHHHHHH-HHHHHHHHHHH
Q ss_conf 87635788988942689999999858998999980762-----6012----46670022112248999-99863039999
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGS----MSCNPAIGGLGKGHLVR-EIDALDGLMGR 71 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~-----~~ae----l~Cnps~gg~akg~L~~-Ei~aLgg~m~~ 71 (626)
|.++|||+|||||-||..||..+||.|.+|+|+|-.+. .+|- --|=|| |-++.. |+-. .+.+
T Consensus 1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPs-----K~L~~~a~~~~---~~~~ 72 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPS-----KALLASSEEFE---NAGH 72 (475)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCH-----HHHHHHHHHHH---HHHH
T ss_conf 996188999998889999999999789919999725776778888014472770130-----99999999999---9987
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHH-HH----HHHHHHHHHHHCCCCCEEEHHHHCCCCCCC-CCEEEEEECCCCCC
Q ss_conf 9988631488730787855534678784-99----999999999970899689800101120258-81132220358633
Q gi|254780808|r 72 VADAAGIQFRVLNVKKGPAVRGPRTQAD-RE----LYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQDNSMI 145 (626)
Q Consensus 72 ~aD~~~i~~r~ln~skGpAv~alraqvD-R~----~fs~~vt~~l~~~pni~i~~~eV~~l~~~~-~~~~~v~~~~g~~~ 145 (626)
.+...++. ..++.+.-..+ .+ ++ .+.+.+...++. .++++++++..=+.... ...+.+....+..+
T Consensus 73 ~~~~~Gi~------~~~~~~d~~~~-~~~k~~~~~~~~~~~~~~~~~-~~v~~~~G~a~f~~~~~~~~~v~v~~~~~~~i 144 (475)
T PRK06327 73 HFADHGIS------VDGVKIDVAKM-IGRKDTVVKQMTGGIEGLFKK-NKITVLKGRGSFVGKTDAGYEIKVKGEGETVV 144 (475)
T ss_pred HHHHCCEE------CCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEEECCCCCEEEEECCCCCCEE
T ss_conf 89865841------46763079999-999999999988899999871-69389999999961478845999838985099
Q ss_pred CCCCCCCCCCCC
Q ss_conf 445433346643
Q gi|254780808|r 146 RCSTVVLTTGTF 157 (626)
Q Consensus 146 ~~~~viiatGtf 157 (626)
.++.+|||||.-
T Consensus 145 ~a~~iiIATGs~ 156 (475)
T PRK06327 145 KAKNVIIATGSE 156 (475)
T ss_pred EECEEEECCCCC
T ss_conf 968799978996
No 39
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99 E-value=3e-09 Score=85.19 Aligned_cols=137 Identities=23% Similarity=0.340 Sum_probs=72.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076--26012466700221122489999986303999999886314
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
|.++|||+|||||-||..||+.+|++|.+|+|+|.+. -++-.--|=|| |-++ +.-+.. -.+.+.+..-++.
T Consensus 1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~GGtC~n~GCiPs-----K~l~-~~a~~~-~~~~~~~~~~gi~ 73 (467)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYWGGVCLNVGCIPS-----KALL-RNAELA-HIFTKEAKTFGIS 73 (467)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCHHH-----HHHH-HHHHHH-HHHHHHHHHCCCC
T ss_conf 98568789999788999999999978990999948996875061760113-----9999-999999-9999788867977
Q ss_pred HHHHCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC--CCCCCCCCCCCC
Q ss_conf 8873078785553467878499-----999999999970899689800101120258811322203--586334454333
Q gi|254780808|r 80 FRVLNVKKGPAVRGPRTQADRE-----LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIRCSTVVL 152 (626)
Q Consensus 80 ~r~ln~skGpAv~alraqvDR~-----~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~--~g~~~~~~~vii 152 (626)
+.+-.-..+..+|. .....+. .+....++++++++..=+ .. + ...|... .+..+.++.+|+
T Consensus 74 --------~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~G~a~f~-~~-~-~v~V~~~~~~~~~i~a~~iiI 141 (467)
T PRK07818 74 --------GEVTFDYGAAFDRSRKVAEGRVAGVH-FLMKKNKITEIHGYGTFT-DA-N-TLEVDLNDGGTETVTFDNAII 141 (467)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHCCEEEEECEEEEE-CC-C-EEEEECCCCCEEEEEEEEEEE
T ss_conf --------42416899999999999999875699-999867939994307982-48-5-138971789627999526898
Q ss_pred CCCCC
Q ss_conf 46643
Q gi|254780808|r 153 TTGTF 157 (626)
Q Consensus 153 atGtf 157 (626)
|||.-
T Consensus 142 ATGs~ 146 (467)
T PRK07818 142 ATGSS 146 (467)
T ss_pred CCCCC
T ss_conf 76887
No 40
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.98 E-value=5.6e-09 Score=83.32 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=84.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCCH-------HHHHHH-HHHHHH---
Q ss_conf 8763578898894268999999985899899998076260124667002---21122-------489999-986303---
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLGK-------GHLVRE-IDALDG--- 67 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~ak-------g~L~~E-i~aLgg--- 67 (626)
||...||+|||+|.||+=||+++ +.|.+|+|++..+-. .+||. ||++. -..+.. +.+=.+
T Consensus 1 ~~~~tDVlVIGsG~AGl~AAi~a-~~~~~V~li~K~~~~-----~~nS~~A~GGi~aa~~~dd~~~~~~DtlkaG~~~~d 74 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYCALNL-RKDLKIVLVSKKKLN-----ECNTYLAQGGISVARNKEDIPTFVEDTLKAGQYKNN 74 (433)
T ss_pred CCCCCCEEEECCCHHHHHHHHHC-CCCCCEEEEECCCCC-----CCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 98648789999569999999961-789988999788999-----976687602724732899879999999986578788
Q ss_pred --HHHHHHHHHHHHHHHHCC-------C-CC-----CCCCCH-H---HHHHHHH--HHHHHHHHHHCCCCCEEEHH-HHC
Q ss_conf --999999886314887307-------8-78-----555346-7---8784999--99999999970899689800-101
Q gi|254780808|r 68 --LMGRVADAAGIQFRVLNV-------K-KG-----PAVRGP-R---TQADREL--YRLAMQREILSQENLDVIQG-EVA 125 (626)
Q Consensus 68 --~m~~~aD~~~i~~r~ln~-------s-kG-----pAv~al-r---aqvDR~~--fs~~vt~~l~~~pni~i~~~-eV~ 125 (626)
++-..++.+.--.++|-. . .| ..+++. | + -|+-. ..+.+.+.+..++||++..+ .++
T Consensus 75 ~~lv~~l~~~s~~ai~~L~~~Gv~f~r~~~g~~~~r~GgHs~~R~~~~-~d~tG~~i~~~L~~~~~~~~~I~i~~~~~~~ 153 (433)
T PRK06175 75 LEAVKILANESIENINKLIDMGLNFDKDEKELNYTKEGAHSVNRIVHF-KDYTGKKVEKILLKKVKKRKNITIIENCELV 153 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 999999999889999999975986211688724541465667852335-8862999999999999717996799738878
Q ss_pred CCCCCCCCEEEEEEC---CCCCCCCCCCCCCCCCCCH
Q ss_conf 120258811322203---5863344543334664310
Q gi|254780808|r 126 GFNTEKNIISSIVMQ---DNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 126 ~l~~~~~~~~~v~~~---~g~~~~~~~viiatGtfl~ 159 (626)
+|+.+++.+.|+... .-..+.+++||+|||-|-+
T Consensus 154 ~Li~~~~~v~G~v~~~~g~~~~i~AkaVILATGG~g~ 190 (433)
T PRK06175 154 DIIENDNTCIGGILLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEECCEEEEEEEEECCCEEEEEECEEEECCCCCCC
T ss_conf 8787389899999995797899983669986798654
No 41
>PRK10262 thioredoxin reductase; Provisional
Probab=98.97 E-value=3.6e-10 Score=91.77 Aligned_cols=112 Identities=18% Similarity=0.295 Sum_probs=66.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76357889889426899999998589989999807626012466700221122489999986303999999886314887
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
.|+|||+|||||-||.=||..++|+|.+|.|++-.. .-|.+.=.+-+
T Consensus 4 ~k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~-~GG~l~~~~~i-------------------------------- 50 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEV-------------------------------- 50 (321)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCE--------------------------------
T ss_conf 606009999976899999999998699679996059-68742005603--------------------------------
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 30787855534678784999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r 83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
-|.--.|...+-...++ .+.+-+... +.+++.++|+.+...++. ..+. .+...+.+++||||||.
T Consensus 51 ~n~pg~~~~i~G~~l~~------~~~~q~~~~-~~~i~~~~v~~i~~~~~~-f~v~-t~~g~~~a~aViiAtG~ 115 (321)
T PRK10262 51 ENWPGDPNDLTGPLLME------RMHEHATKF-ETEIIFDHINKVDLQNRP-FRLT-GDSGEYTCDALIIATGA 115 (321)
T ss_pred EECCCCCCCCCHHHHHH------HHHHHHHHH-CCEEEECCCCEEEEECCC-EEEE-CCCCEEEEEEEEEEECC
T ss_conf 56178887647799999------999999970-874894123157740365-1997-58988999899996468
No 42
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95 E-value=2.8e-09 Score=85.43 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
|++-|||||||||-||.-||..+||.|.+|+++|.. .+|-..|..+-
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~--~~GGqi~~t~~------------------------------- 47 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQITITSE------------------------------- 47 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCEECCC-------------------------------
T ss_conf 984472999995688999999999789967999668--86865563685-------------------------------
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 730787855534678784999999999999708996898001011202588113222035863344543334664310
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
+-|. |.... +.-....+.|++-.++. .+++.+++|+++...+. +..|.|..+ .+.+++||||||.--+
T Consensus 48 VeNY---PG~~~----isG~eL~~~m~~qA~~~-Gve~~~~~V~~i~~~g~-~k~V~t~~g-~~~ak~VIIATGa~pr 115 (555)
T TIGR03143 48 VVNY---PGILN----TTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred EEEC---CCCCC----CCHHHHHHHHHHHHHHC-CCEEEEEEEEEEECCCC-CEEEEECCC-EEEECEEEECCCCCCC
T ss_conf 6878---88779----86899999999999977-96999656999973799-589998897-8996979999999714
No 43
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.94 E-value=7.1e-09 Score=82.60 Aligned_cols=142 Identities=23% Similarity=0.250 Sum_probs=73.5
Q ss_pred CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987-635788988942689999999858998999980762---6012466700221122489999986303999999886
Q gi|254780808|r 1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA 76 (626)
Q Consensus 1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~ 76 (626)
||+ ++|||+|||||.||--||..+|+.|.+|+|+|..+. ++-.--|=|| |- |.+-...+-.. +.....
T Consensus 1 ~m~m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPs-----K~-L~~~a~~~~~~--~~~~~~ 72 (465)
T PRK05249 1 MMHMYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPS-----KA-LREAVLRIIGF--NQNPLY 72 (465)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHH-----HH-HHHHHHHHHHH--HHCCCC
T ss_conf 99877789899997789999999999789929999769997665344461767-----99-99999999998--755424
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCCCCCC
Q ss_conf 314887307878555346787849999999999997089968980010112025881132220358--633445433346
Q gi|254780808|r 77 GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTT 154 (626)
Q Consensus 77 ~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~viiat 154 (626)
.. +..-..-..+++..- .+--.......++..++. .++++++++..=+. .. ...|...+| ..+.++.+||||
T Consensus 73 ~~-~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~-~gv~~i~G~a~f~~-~~--~v~V~~~dg~~~~i~a~~iIIAT 146 (465)
T PRK05249 73 RD-YRVKLRITFADLLAR-ADRVINKQVEVRRGFYAR-NRVEVIQGRASFVD-PH--TVEVECPDGSVETLTAEKIVIAT 146 (465)
T ss_pred CC-CCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH-CCCEEEEEEEEECC-CC--CEEEECCCCCEEEEEEEEEEEEC
T ss_conf 65-566686289999999-999998887899999986-89789984789727-98--40443489962899842799953
Q ss_pred CC
Q ss_conf 64
Q gi|254780808|r 155 GT 156 (626)
Q Consensus 155 Gt 156 (626)
|.
T Consensus 147 Gs 148 (465)
T PRK05249 147 GS 148 (465)
T ss_pred CC
T ss_conf 75
No 44
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.94 E-value=1.2e-08 Score=81.06 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=74.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 763578898894268999999985899899998076260----1246670022112248999998630399999988631
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~----ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
+++|||+|||||-||..||..+|+.|.+|+|+|-+...+ ..--|-|| |- |++.-.. ..|-...
T Consensus 1 M~~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPs-----K~-Li~~a~~-------~~d~~~~ 67 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPT-----KT-LVHDAQQ-------HTDFVRA 67 (441)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH-----HH-HHHHHHH-------CCCHHHH
T ss_conf 997898999978899999999997899299997589987732456685888-----99-9999987-------2579999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCC
Q ss_conf 4887307878555346787849999999999997089968980010112025881132220358-63344543334664
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGT 156 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g-~~~~~~~viiatGt 156 (626)
..|. -++ +++ ........+...+++++++++..=+. ++. ..|...+| ..+.++.+|||||.
T Consensus 68 ~~~~------~~~------~~~--~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~-v~V~~~~g~~~l~a~~ivIATGs 129 (441)
T PRK08010 68 IQRK------NEV------VNF--LRNKNFHNLADMPNIDVIDGQAEFIN--NHS-LRVHRPDGNLEIHGEKIFINTGA 129 (441)
T ss_pred HHHH------HHH------HHH--HHHCCHHHHHHCCCCEEEEEEEEECC--CCC-EEEECCCCCEEEEEEEEEEECCC
T ss_conf 9879------999------999--87553988854269589998999857--982-37764899899982589993377
No 45
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.93 E-value=1.7e-08 Score=79.94 Aligned_cols=152 Identities=16% Similarity=0.217 Sum_probs=93.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC--H--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858998999980762601246670022112--2--489999986303999999886
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--K--GHLVREIDALDGLMGRVADAA 76 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a--k--g~L~~Ei~aLgg~m~~~aD~~ 76 (626)
|.++.|||+|||||.+|.=+|+.+|+.|++|.++|.++..-..-.-.|.....| . -.+.+++....-+.. ..
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~----~~ 76 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQA----MR 76 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHH----HC
T ss_conf 99999848999936999999999986699789994899876665579873389878899999998888487786----25
Q ss_pred HHHHHHHCCCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 3148873078785-----------5534678784999999999999708996898-001011202588113222035863
Q gi|254780808|r 77 GIQFRVLNVKKGP-----------AVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSM 144 (626)
Q Consensus 77 ~i~~r~ln~skGp-----------Av~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~ 144 (626)
...++.+.....+ ....+..-|.+........+.++++|||++. ..+|+++...+.. +.+.+.+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~-~~v~l~~g~~ 155 (391)
T PRK08020 77 CHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDG-WELELADGET 155 (391)
T ss_pred CCCEEEEEEECCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCE-EEEEECCCCE
T ss_conf 687148986127885587254432897540121269999999999983899699958802688974986-8999489999
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3445433346643
Q gi|254780808|r 145 IRCSTVVLTTGTF 157 (626)
Q Consensus 145 ~~~~~viiatGtf 157 (626)
+.++-+|.|-|..
T Consensus 156 i~a~lvIgADG~~ 168 (391)
T PRK08020 156 IQAKLVIGADGAN 168 (391)
T ss_pred EEECEEEEECCCC
T ss_conf 9837999907997
No 46
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=3.2e-08 Score=77.89 Aligned_cols=39 Identities=41% Similarity=0.618 Sum_probs=36.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 987635788988942689999999858998999980762
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
|..++|||+|||+|+||.=||+.+|..|.+|+|+|..+.
T Consensus 1 ~~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~ 39 (560)
T PRK07843 1 MTGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 39 (560)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 998665789989678999999999988998899969999
No 47
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.1e-09 Score=85.12 Aligned_cols=113 Identities=24% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7635788988942689999999858998-999980762601246670022112248999998630399999988631488
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
.+.|||+|||||-||.=||..++|.|.+ +++++...-. +.+.=.+.+.+ .-|.
T Consensus 1 ~~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~g-g~~~~~~~ven------------ypg~------------- 54 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTTDVEN------------YPGF------------- 54 (305)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCEEECC------------CCCC-------------
T ss_conf 942288998958899999999987589856999478758-86344333357------------6798-------------
Q ss_pred HHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 730787855-53467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r 82 VLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 82 ~ln~skGpA-v~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
|. ..++ .- .+.|.+-.+ .++++++..+|.++..... ...|.|..+. +.|+.+|+|||.--
T Consensus 55 -------~~~~~g~---~L----~~~~~~~a~-~~~~~~~~~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 55 -------PGGILGP---EL----MEQMKEQAE-KFGVEIVEDEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred -------CCCCCHH---HH----HHHHHHHHH-HCCEEEEEEEEEEEEECCC-EEEEEECCCE-EEEEEEEECCCCCC
T ss_conf -------6777508---99----999997776-3470888899899860686-0999947974-98656999617765
No 48
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.90 E-value=1.1e-08 Score=81.16 Aligned_cols=140 Identities=24% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998076--2601246670022112248999998630399999988631488
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
-+|||+|||||-||-.||+.+|++|.+|+|+|-.. -++-.--|-||=--+....+.+.++..... +..+....+ .
T Consensus 3 ~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~-Gi~~~~~~~--d 79 (462)
T PRK06416 3 FDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERYREARHSEDF-GIKAENVGF--D 79 (462)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCC--C
T ss_conf 7799899998889999999999689939999679978620416705069999999999999877626-812677640--8
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 730787855534678784999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
+ ++++.-+-+ -.+.....+...++++ ++++++++.. + .+++.+.......+..+.++.+|||||.
T Consensus 80 ~------~~~~~~~~~-~~~~l~~~~~~~l~~~-gv~~i~G~a~-f-~~~~~v~V~~~~~~~~~~a~~iIIATGs 144 (462)
T PRK06416 80 F------KKVQEWKNG-VVARLTGGVEGLLKKN-KVDIIRGEAK-L-VDPNTVRVKGEDGEQTYTAKNIILATGS 144 (462)
T ss_pred H------HHHHHHHHH-HHHHHHHHHHHHHHHC-CCEEEEEEEE-E-ECCCEEEEEECCCCEEEEECEEEECCCC
T ss_conf 9------999999999-9999878899999877-9789983899-8-1276045553699669994869999899
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89 E-value=7.2e-09 Score=82.55 Aligned_cols=113 Identities=23% Similarity=0.438 Sum_probs=75.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998076260124667002211224899999863039999998863148873
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL 83 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l 83 (626)
..|||+|||||-||.=||..+||.|++|.+++.+.. |++.-.+.+ +
T Consensus 211 ~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~G--Gqv~~t~~I------------e-------------------- 256 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG--GQVKDTVGI------------E-------------------- 256 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCEECCCE------------E--------------------
T ss_conf 888889989678999999999977997699924877--531303460------------0--------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 0787855534678784999999999999708996898001-011202588113222035863344543334664310
Q gi|254780808|r 84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
|. |.+.. +.-..+...|.+-.++. ++++++.+ |..+. ..+....+.+..|..+.+++||+|||.--+
T Consensus 257 Ny---pG~~~----i~G~eL~~~~~~qa~~~-gv~~~~~~~v~~i~-~~~~~~~v~~~~g~~~~aktVIiATGa~~r 324 (515)
T TIGR03140 257 NL---ISVPY----TTGSQLAANLEEHIKQY-PIDLMENQRAKKIE-TEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EC---CCCCC----CCHHHHHHHHHHHHHHC-CCEEEECCEEEEEE-CCCCCEEEEECCCCEEEECEEEECCCCCCC
T ss_conf 44---89877----75799999999999974-96899133699997-279818999879989993979995698735
No 50
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.89 E-value=5.7e-09 Score=83.27 Aligned_cols=138 Identities=23% Similarity=0.338 Sum_probs=73.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 763578898894268999999985899899998076---26012466700221122489999986303999999886314
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
+|+|||+|||||-||-.||+.+|++|.+|+|+|-+. -++.---|-|| |.++.. -+... ..+..+....-
T Consensus 1 M~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPs-----K~Ll~~-a~~~~--~~~~~~~~~~g 72 (466)
T PRK06115 1 MKSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPS-----KALLHA-SELYE--AASGGEFAHLG 72 (466)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHH-----HHHHHH-HHHHH--HHHCCCCCCCC
T ss_conf 98469899997889999999999789939999679996465204575669-----999999-99999--86344020387
Q ss_pred HHHHCCCCCCCC-C-CHHHHHHH--HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCCCCC
Q ss_conf 887307878555-3-46787849--999999999997089968980010112025881132220358--63344543334
Q gi|254780808|r 80 FRVLNVKKGPAV-R-GPRTQADR--ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLT 153 (626)
Q Consensus 80 ~r~ln~skGpAv-~-alraqvDR--~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~viia 153 (626)
.. .+ |.. | .+..+.|+ ...++.+...++ ..++++++++.. +.. ...+.|...+| ..+.++.+|||
T Consensus 73 ~~----~~-~~~d~~~~~~~~~~~v~~~~~~~~~~~~-~~~v~~i~G~a~-f~~--~~~v~V~~~~g~~~~i~a~~iiIA 143 (466)
T PRK06115 73 IE----VK-PTLNLAQMMKQKDESVTALTKGVEFLFR-KNKVDWIKGWGR-LDG--VGKVVVKAEDGSETQLEAKDIVIA 143 (466)
T ss_pred EE----EC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEE-EEC--CCCEEEECCCCCEEEEEEEEEEEC
T ss_conf 57----34-6258999999999999999999999986-189479952599-954--994189858997799995689999
Q ss_pred CCCC
Q ss_conf 6643
Q gi|254780808|r 154 TGTF 157 (626)
Q Consensus 154 tGtf 157 (626)
||.-
T Consensus 144 TGs~ 147 (466)
T PRK06115 144 TGSE 147 (466)
T ss_pred CCCC
T ss_conf 8998
No 51
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.89 E-value=9.5e-09 Score=81.66 Aligned_cols=137 Identities=22% Similarity=0.347 Sum_probs=75.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87635788988942689999999858998999980762---601246670022112248999998630399999988631
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
|..+|||+|||||-||-.||+.+|+.|.+|+|+|-+.. ++-.--|=||---+....+..+++.+. ..++
T Consensus 1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~~~~~--------~~Gi 72 (472)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALA--------EHGI 72 (472)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH--------HCCE
T ss_conf 99778789999888999999999978996999963799765612358032299999999999986767--------4577
Q ss_pred HHHHHCCCCCCCC--CCHHHHHH--HHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCCCC
Q ss_conf 4887307878555--34678784--9999999999997089968980010112025881132220358--6334454333
Q gi|254780808|r 79 QFRVLNVKKGPAV--RGPRTQAD--RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVL 152 (626)
Q Consensus 79 ~~r~ln~skGpAv--~alraqvD--R~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~vii 152 (626)
.+ ..|.. .+++...| ...++..+...++ ..++++++++-. +..++ ...|...++ ..+.++.+||
T Consensus 73 ~~------~~~~~d~~~~~~~~~~~v~~l~~~~~~~~~-~~gV~~i~G~a~-f~~~~--~v~v~~~~g~~~~l~a~~ivI 142 (472)
T PRK06467 73 VF------GEPKIDIDKMRARKEKVVKQLTGGLAGMAK-GRKVTVVNGLGK-FTGGN--TVEVTGEDGKTEVIEFDNAII 142 (472)
T ss_pred EC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEECCCEE-ECCCC--EEEEECCCCCEEEEEEEEEEE
T ss_conf 25------887427999999999999999889999998-779569715067-54898--036433888648998779999
Q ss_pred CCCC
Q ss_conf 4664
Q gi|254780808|r 153 TTGT 156 (626)
Q Consensus 153 atGt 156 (626)
|||.
T Consensus 143 ATGs 146 (472)
T PRK06467 143 AAGS 146 (472)
T ss_pred CCCC
T ss_conf 4699
No 52
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.88 E-value=1.2e-08 Score=81.05 Aligned_cols=147 Identities=23% Similarity=0.291 Sum_probs=92.3
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 98763578898894268999999985899899998076260124667002211224899999863039999998863-14
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG-IQ 79 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~-i~ 79 (626)
|.+++|||+|||||.+|.=+|++||+.|++|.|+|.++.. . .+-++ ++..+ =++=++.||= --.+.+.+. ++
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~-~---d~Ra~-al~~~-s~~~L~~lGl-~~~l~~~~~~~~ 73 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPY-A---DLRTT-ALLGP-SIRFLERLGV-WARLAPHAAPLQ 73 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-C---CCCEE-EECHH-HHHHHHHCCC-HHHHHHHCCCCE
T ss_conf 9978886899990689999999998789988999579988-8---88679-98689-9999998898-788875148522
Q ss_pred -HHHHCCCCCC-----C---------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf -8873078785-----5---------534678784999999999999708996898001011202588113222035863
Q gi|254780808|r 80 -FRVLNVKKGP-----A---------VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM 144 (626)
Q Consensus 80 -~r~ln~skGp-----A---------v~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~ 144 (626)
.++.. ..|+ - ...+.-.+.+........+.+...||++....+++++..++..+ .+.+.+|..
T Consensus 74 ~~~~~d-~~~~~~~~~~~~f~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~ 151 (386)
T PRK07494 74 SMRIVD-ATGRLIRAPEVRFRASEIGEDAFGYNIPNWLLNRALEARAAELPNIDRFDDEAESVRPRGDEV-TVTLADGTT 151 (386)
T ss_pred EEEEEE-CCCCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEE-EEEECCCCE
T ss_conf 699996-898511376410353224776632101269999999999971899799777068999669848-999789969
Q ss_pred CCCCCCCCCCCC
Q ss_conf 344543334664
Q gi|254780808|r 145 IRCSTVVLTTGT 156 (626)
Q Consensus 145 ~~~~~viiatGt 156 (626)
+.++-+|-|-|.
T Consensus 152 i~a~llIgADG~ 163 (386)
T PRK07494 152 LSARLVVAADGR 163 (386)
T ss_pred EEEEEEEEECCC
T ss_conf 998699990588
No 53
>PRK13748 putative mercuric reductase; Provisional
Probab=98.85 E-value=1.4e-08 Score=80.45 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=76.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH-HHHH
Q ss_conf 763578898894268999999985899899998076--2601246670022112248999-99863039999998-8631
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVR-EIDALDGLMGRVAD-AAGI 78 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~-Ei~aLgg~m~~~aD-~~~i 78 (626)
+..|||+|||+|-||--||..+|++|.+|+|+|-.. -++---=|-|| |-+|.. |+-. + .+... ..++
T Consensus 96 ~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lGGTClN~GCIPS-----K~Ll~aA~~~~---~-~r~~~~~~Gi 166 (561)
T PRK13748 96 EGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPS-----KIMIRAAHIAH---L-RRESPFDGGI 166 (561)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHH-----HHHHHHHHHHH---H-HHHCCCCCCC
T ss_conf 9987689989588999999999978997999947996886656760448-----99999999999---9-9745014771
Q ss_pred HHHHHCCCCCCCCC--CHHH----HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCC
Q ss_conf 48873078785553--4678----7849999999999997089968980010112025881132220358--63344543
Q gi|254780808|r 79 QFRVLNVKKGPAVR--GPRT----QADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTV 150 (626)
Q Consensus 79 ~~r~ln~skGpAv~--alra----qvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~v 150 (626)
. ...|.+. ++.+ .+|+-.. ......|+++|+|++++++.. +. +...+.|.+.+| ..+.++.+
T Consensus 167 ~------~~~~~vd~~~~~~~k~~~v~~l~~-~~~~~~l~~~~gV~vi~G~A~-f~--~~~tv~V~~~dg~~~~i~a~~i 236 (561)
T PRK13748 167 A------ATAPTIDRSKLLAQQQARVDELRH-AKYEGILEGNPAITVLHGEAR-FK--DDQTLIVRLNDGGERVVAFDRC 236 (561)
T ss_pred C------CCCCEECHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEEEEEE-EE--CCCEEEEEECCCCEEEEEECEE
T ss_conf 1------677546799999999999999874-468899743798499984999-95--3988999935896489941869
Q ss_pred CCCCCCC
Q ss_conf 3346643
Q gi|254780808|r 151 VLTTGTF 157 (626)
Q Consensus 151 iiatGtf 157 (626)
|||||.-
T Consensus 237 IIATGS~ 243 (561)
T PRK13748 237 LIATGAS 243 (561)
T ss_pred EECCCCC
T ss_conf 9947887
No 54
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=98.84 E-value=3.5e-09 Score=84.72 Aligned_cols=389 Identities=22% Similarity=0.288 Sum_probs=205.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCEEEEE--------------------C-CH-----------HH-----------
Q ss_conf 7889889426899999998589---9899998--------------------0-76-----------26-----------
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG---ASTALIT--------------------H-KT-----------ST----------- 40 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~--------------------~-~~-----------~~----------- 40 (626)
||||||||+||+=||.++|+.| ++|++++ . +. ||
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD 80 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD 80 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97888186689999999973577961079995569885201535678999957786432072123041101442132589
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCC---------------------------CCCC
Q ss_conf 012466700221122489999986303999999--88631488730787---------------------------8555
Q gi|254780808|r 41 IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVA--DAAGIQFRVLNVKK---------------------------GPAV 91 (626)
Q Consensus 41 ~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~a--D~~~i~~r~ln~sk---------------------------GpAv 91 (626)
-.|+=|+.|- -.|.||+..|=.--|.- |.-+| .|..| +||-
T Consensus 81 Ave~~~~~AP------~~v~eLe~wG~PfSR~~kGDRmai----inaqkttiteeDfRDG~IaQR~FGG~~~~~Gg~~a~ 150 (636)
T TIGR01812 81 AVEYMCKEAP------KAVLELERWGVPFSRLPKGDRMAI----INAQKTTITEEDFRDGRIAQRPFGGASFDYGGAAAR 150 (636)
T ss_pred HHHHHHHHCC------HHHHHHHHCCCCCCCCCCCCEEEE----EECCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHH
T ss_conf 9999985151------789999737898567867764777----624542002011558835343788888655662221
Q ss_pred CCHHHHHHHHHHHH--HHHHHHHCCCCCEEEHH-HHCCCCCC-CC--CEEEEE-----ECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 34678784999999--99999970899689800-10112025-88--113222-----0358633445433346643101
Q gi|254780808|r 92 RGPRTQADRELYRL--AMQREILSQENLDVIQG-EVAGFNTE-KN--IISSIV-----MQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 92 ~alraqvDR~~fs~--~vt~~l~~~pni~i~~~-eV~~l~~~-~~--~~~~v~-----~~~g~~~~~~~viiatGtfl~g 160 (626)
++- .-.||-.|.. .+=+....+++|++.++ .+.+|..+ ++ .+.||. +..-..+.||+||+|||-+
T Consensus 151 RTc-yAADkTGh~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~--- 226 (636)
T TIGR01812 151 RTC-YAADKTGHALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGY--- 226 (636)
T ss_pred HHH-HHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCC---
T ss_conf 342-0012113147898999985379942753888877887458986799999998058808999607489830651---
Q ss_pred HHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3444320233222475-111331000010112005444454410110000134432114787668777435657800000
Q gi|254780808|r 161 VIHIGKLKIPAGRMGD-SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE 239 (626)
Q Consensus 161 ~~~~g~~~~~~gr~~~-~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~ 239 (626)
||+.. ..+.+....= |+--|.+...-.|-.| +-|.-+++..-
T Consensus 227 -----------GR~Y~~~tTNa~~~TG------------------DG~A~AlraG~PqL~D-----MEFvQFHPTGL--- 269 (636)
T TIGR01812 227 -----------GRVYKFTTTNAHINTG------------------DGLAMALRAGVPQLKD-----MEFVQFHPTGL--- 269 (636)
T ss_pred -----------HHHHCCCCCCCEEECC------------------CHHHHHHHHCCCCCCC-----CCCEECCCCCC---
T ss_conf -----------0210304454422354------------------0688888734643168-----44050367455---
Q ss_pred CCCCCCCCCHHHHHHHCCCC---CCCCCCCCCCCCCC--CCCCCCCCCC-------------------CCCCCCC-CCCE
Q ss_conf 00012320014777640245---75414432356422--2553212335-------------------6764334-5201
Q gi|254780808|r 240 CGITRTNLETHRIIMENIKH---SAIYSGDIKSYGPR--YCPSIEDKIV-------------------RFGERNG-HQIF 294 (626)
Q Consensus 240 ~~~~~t~~~~~~~~~~~~~~---~~~~~g~~~~~gpr--ycPsie~k~~-------------------~~~~~p~-h~Vq 294 (626)
..-.|...+.|+ ..+.+..=.++-.| |-|.-|.|.. .++..|. ..|+
T Consensus 270 --------~~sGiL~tEgcRGEGGyL~N~~GeRFM~ryGYAPetP~k~eLApRDvVSRa~~~EireGRGv~~~~~k~~v~ 341 (636)
T TIGR01812 270 --------APSGILITEGCRGEGGYLINKEGERFMERYGYAPETPEKMELAPRDVVSRAMVTEIREGRGVGSGPGKDYVY 341 (636)
T ss_pred --------CCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf --------667717740133276168678753103446888788750004787699999999998448889887887788
Q ss_pred E--EECCCCCCEEEECCCCCCCCHHHHHH--------HHHH-HHHHHHCCEEEECCHHHHCCC-CHHH-----HHH-HHH
Q ss_conf 3--01578776454347766689889999--------9987-543400100110001211023-5456-----567-765
Q gi|254780808|r 295 L--EPEGLNTDVVYPNGISTALPEEIQHQ--------FIRT-IPGLEKVNIIRPGYAIEYDYI-NPKE-----LFP-TLE 356 (626)
Q Consensus 295 L--rpE~~~~~~~n~vGFqTsL~~~~Q~r--------v~r~-IPGLEnAef~R~Gy~ieyd~~-~P~~-----L~~-tLe 356 (626)
| |.=|.+. +.++||.=-|.- |-.. || |||- .||.-= -|+- ... .=.
T Consensus 342 LDLrHLGee~-------i~~RLP~i~E~A~~f~GVDPv~~pWiP-------VrPt--~HY~MGGI~T~~~G~~~~~D~~~ 405 (636)
T TIGR01812 342 LDLRHLGEEK-------IEERLPQIRELAKTFAGVDPVKEPWIP-------VRPT--AHYSMGGIDTNYRGQVIGEDAKN 405 (636)
T ss_pred EEHHHCCHHH-------HHHCCHHHHHHHHHHCCCCCCCCCCCC-------CCCC--CCCCCCCEEECCCCEEECCCCCC
T ss_conf 7640134788-------852075689999970488830057626-------4564--44118278445842487016788
Q ss_pred HH-CCCEEEEEEEEECCC----------HHHHHHHHHHHHHHHHHHHCC-CCCC--CC---CCCCCCHHHHHHHHHHCCC
Q ss_conf 40-334156621330433----------466666677899999874203-3456--54---6532107999999886078
Q gi|254780808|r 357 TK-KISGLFLAGQINGTT----------GYEEAAAQGLVAGINSARKSN-KLDC--IC---FSRTDSYIGVMIDDLTSKG 419 (626)
Q Consensus 357 ~k-~~~~LffAGQI~Gte----------GYeEAAAqGl~AGiNa~~~~~-~~~p--~~---l~R~eaYiGVlIDDLitkg 419 (626)
.. -++|||-||=-.=|+ ==.|.--=|-+||..++-+++ -..+ +. ..+...-+=-.+|.|...+
T Consensus 406 ~~~iv~GLfAaGE~ACVSVHGANRLGsNSLle~vVFGr~aG~~~ae~~~~~~~~neL~~~~~~~~~~~~~~~~~~~~~~~ 485 (636)
T TIGR01812 406 NDSIVKGLFAAGECACVSVHGANRLGSNSLLELVVFGRIAGEAAAEYLAKTGVDNELAADLEEEEVKKEEALIDLLKEEG 485 (636)
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 88621010220102220341213060567999999979999999999860688631133454458999999999730367
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCC
Q ss_conf 774024420001221211578713668887877378838999999999999999999876-336883
Q gi|254780808|r 420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-SLVLTS 485 (626)
Q Consensus 420 ~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~-~~~~~p 485 (626)
.. =+|.+.=|.|-+..+-..=.-+| .-+.+++-.++|.+++++.. +..+.-
T Consensus 486 ~~-~~~~a~ir~~l~~~M~~~~gvFR--------------~~~~l~~a~~~i~eL~eR~~~~v~i~D 537 (636)
T TIGR01812 486 NG-GERVAQIREELQETMEANVGVFR--------------TEELLKKAVDEIEELRERRYKNVKIND 537 (636)
T ss_pred CC-CCCHHHHHHHHHHHHHCCCEEEE--------------CCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88-73579999999888665857987--------------732278899999998610016456740
No 55
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.83 E-value=5.3e-08 Score=76.38 Aligned_cols=155 Identities=22% Similarity=0.273 Sum_probs=86.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-CC-------CCCCCC-C----CCCC-CHHHHHHHHHHHH-H
Q ss_conf 76357889889426899999998589989999807626-01-------246670-0----2211-2248999998630-3
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IG-------SMSCNP-A----IGGL-GKGHLVREIDALD-G 67 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-~a-------el~Cnp-s----~gg~-akg~L~~Ei~aLg-g 67 (626)
-...||+|||+|.||.=||+.+|+.|.+|+|+|.-|.. .| -+.|.. + ..+. ..-....++-..+ +
T Consensus 2 ~~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~s~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 81 (456)
T PRK08274 2 AAMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (456)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 97388899998899999999999879909999832777888030553864455368665426889999999999987289
Q ss_pred -----HHHHHHHHHHHHHHHHCCCCC----CC-CCCHHHHHHH--------HHHHHHHHHHHHCCCCCEEE-HHHHCCCC
Q ss_conf -----999999886314887307878----55-5346787849--------99999999999708996898-00101120
Q gi|254780808|r 68 -----LMGRVADAAGIQFRVLNVKKG----PA-VRGPRTQADR--------ELYRLAMQREILSQENLDVI-QGEVAGFN 128 (626)
Q Consensus 68 -----~m~~~aD~~~i~~r~ln~skG----pA-v~alraqvDR--------~~fs~~vt~~l~~~pni~i~-~~eV~~l~ 128 (626)
++...++.+.-...+|.. .| |. .+.. -..++ ..+-..+.+.+++. +++|. +-.+++|+
T Consensus 82 ~~d~~l~~~~~~~s~~~i~wl~~-~Gv~f~~~~~~~~-~~~~~~~~~~g~G~~~~~~l~~~~~~~-gv~i~~~t~~~~Li 158 (456)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRK-HGVRFQPPLSGAL-HVARTNAFFMGGGKALVNALYRSAERL-GVEIRYDAPVTALE 158 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCEEEEEE
T ss_conf 87699999999723999999997-1961356688864-447983414798799999999999973-99799388889999
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 258811322203586334454333466431013
Q gi|254780808|r 129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161 (626)
Q Consensus 129 ~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~ 161 (626)
.+++.++||.... ..+.+++||||||-|-+..
T Consensus 159 ~d~g~V~Gv~~~~-~~i~AkaVVLAtGGf~~N~ 190 (456)
T PRK08274 159 LDDGRFVAARAGA-ERIRARAVVLAAGGFEANR 190 (456)
T ss_pred EECCEEEEEEECE-EEECCCEEEEECCCCCCCH
T ss_conf 9099999999253-8971686999578988899
No 56
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.82 E-value=9.4e-08 Score=74.62 Aligned_cols=38 Identities=42% Similarity=0.580 Sum_probs=34.8
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 98763578898894268999999985899899998076
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|-.-+|||||||+|.||.=||+.+|+.|.+|+|+|..+
T Consensus 1 ~~tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~ 38 (567)
T PRK12842 1 MNELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEP 38 (567)
T ss_pred CCCCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98730596998968899999999998799089997799
No 57
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.81 E-value=9.4e-08 Score=74.62 Aligned_cols=151 Identities=18% Similarity=0.267 Sum_probs=83.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-HHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6357889889426899999998589989999807-62601-246670022112248999998630399999988631488
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIG-SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~~~~a-el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
|+|||+|||||.+|+=+|+.||+.|++|.++|.+ |..+. ..++..-.-++... =++-++.||- .-.+.+.....++
T Consensus 2 ~~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~~~~~~R~~al~~~-s~~~L~~lG~-~~~i~~~~~~~~~ 79 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEASQPMDIRVSAISQN-SVDLLESLGA-WSSIVAMRVCPYK 79 (384)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECHH-HHHHHHHCCC-HHHHHHCCCCCCC
T ss_conf 8189999992499999999999579959999689987666667877056786799-9999998798-6468761478600
Q ss_pred HHCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 730787855-----------534678784999999999999708996898001-01120258811322203586334454
Q gi|254780808|r 82 VLNVKKGPA-----------VRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCST 149 (626)
Q Consensus 82 ~ln~skGpA-----------v~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~ 149 (626)
-+.....|. ...+.--+..........+.+..+||+++..+. |+++.... ....+.+.+|..+.++-
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~~i~~~~~~~v~~~~~~~-~~~~v~l~~g~~i~a~l 158 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLLCPEKLKDLEFSA-EGNRVTLESGAEIEAKW 158 (384)
T ss_pred EEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECC-CEEEEEECCCCEEEEEE
T ss_conf 25530177644124853438630000343799999999999848991998387788988538-81499978999998547
Q ss_pred CCCCCCCC
Q ss_conf 33346643
Q gi|254780808|r 150 VVLTTGTF 157 (626)
Q Consensus 150 viiatGtf 157 (626)
+|.|-|.-
T Consensus 159 lIgADG~~ 166 (384)
T PRK08849 159 VIGADGAN 166 (384)
T ss_pred EEEEECCC
T ss_conf 99920786
No 58
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=7.2e-08 Score=75.44 Aligned_cols=123 Identities=24% Similarity=0.390 Sum_probs=70.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 635788988942689999999858998999980762601----2466700221122489999986303999999886314
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a----el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
++|||+|||||.||.-||..+|+.|.+|+|+|-....+| .--|=|| |-++.. ++. ...
T Consensus 2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPs-----k~ll~~------------a~~-~~~ 63 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPT-----KTLLVA------------AEK-NLS 63 (438)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCC-----HHHHHH------------HHC-CCC
T ss_conf 95587999978899999999997889499994699876855477870401-----578987------------662-799
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC-CCCCCCCCCCCCCCCCC
Q ss_conf 8873078785553467878499999999999970899689800101120258811322203-58633445433346643
Q gi|254780808|r 80 FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 80 ~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-~g~~~~~~~viiatGtf 157 (626)
| +.....+-.+. ..........+ ...++++++++..-+. + ....|... ....+.++.+|||||.-
T Consensus 64 ~--------~~~~~~k~~~~-~~l~~~~~~~~-~~~gv~~~~g~a~~~~--~-~~v~V~~~~~~~~~~a~~iIIATGs~ 129 (438)
T PRK07251 64 F--------EEVMATKNTVT-SRLNAKNYAML-AGTGVDIYDAEAHFVS--N-KVIEVTAGDEKQELTAETIVINTGAV 129 (438)
T ss_pred H--------HHHHHHHHHHH-HHHHHHHHHHH-HHCCCEEEEEEEEECC--C-CEEEEECCCCEEEEEEEEEEECCCCC
T ss_conf 9--------99999999999-99988999999-7489489997999816--8-48999559972999976898726787
No 59
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.79 E-value=9.3e-08 Score=74.65 Aligned_cols=150 Identities=21% Similarity=0.289 Sum_probs=86.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCCCCH------H---HHHHHHHHHHH-----
Q ss_conf 635788988942689999999858998999980762601246670--0221122------4---89999986303-----
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGK------G---HLVREIDALDG----- 67 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg~ak------g---~L~~Ei~aLgg----- 67 (626)
-..||+|||+|.||+=||+++|.. +|.|++..+-.. .||- +-||++. + |..--+.+=+|
T Consensus 8 ~~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~~~---g~ss~~AqGGi~a~~~~~Ds~e~h~~Dtl~aG~gl~d~~ 82 (507)
T PRK07512 8 LTGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPLGE---GASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDEA 82 (507)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCCCC---CCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 369989999669999999983307--839999058899---962667524514606999999999999999647878899
Q ss_pred HHHHHHHHHHHHHHHHCC--------CCCC------CCCC----HHHHHHH--HHHHHHHHHHHHCCCCCEEEHH-HHCC
Q ss_conf 999999886314887307--------8785------5534----6787849--9999999999970899689800-1011
Q gi|254780808|r 68 LMGRVADAAGIQFRVLNV--------KKGP------AVRG----PRTQADR--ELYRLAMQREILSQENLDVIQG-EVAG 126 (626)
Q Consensus 68 ~m~~~aD~~~i~~r~ln~--------skGp------Av~a----lraqvDR--~~fs~~vt~~l~~~pni~i~~~-eV~~ 126 (626)
++-..++++.--.+.|-. ..|. ++++ .+++.|. ..+-..+.+.+..+++|++... .+++
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~F~r~~~G~~~~~~~ggHs~~R~~~~~gd~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~ 162 (507)
T PRK07512 83 VARRIAAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARR 162 (507)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 99999998999999999809936447887511456655678727874588743699999999998279944999899888
Q ss_pred CCCCCCCEEEEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf 2025881132220358---6334454333466431
Q gi|254780808|r 127 FNTEKNIISSIVMQDN---SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 127 l~~~~~~~~~v~~~~g---~~~~~~~viiatGtfl 158 (626)
|+.+++.+.|+..... ..+.+++||+|||-+-
T Consensus 163 Ll~~~g~v~Gv~~~~~g~~~~i~A~aVILATGG~g 197 (507)
T PRK07512 163 LLVEDGAVAGVLLATAGGPVVLPARAVVLATGGIG 197 (507)
T ss_pred EEECCCEEEEEEEECCCCEEEEEECEEEECCCCCC
T ss_conf 77538807899997389889998286998889775
No 60
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.79 E-value=1.4e-07 Score=73.46 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=33.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 7635788988942689999999858998999980762
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
..+|||+|||+|+||.=||+++|..|.+|+|+|..+.
T Consensus 4 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~ 40 (552)
T PRK12844 4 DVTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPK 40 (552)
T ss_pred CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 7720979989678999999999988996899988999
No 61
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.79 E-value=2.9e-08 Score=78.19 Aligned_cols=155 Identities=25% Similarity=0.328 Sum_probs=88.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH--HCCCCCCCC-----CCC-CCC------HH-HHHHHHHHHH--
Q ss_conf 635788988942689999999858998999980762--601246670-----022-112------24-8999998630--
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNP-----AIG-GLG------KG-HLVREIDALD-- 66 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~--~~ael~Cnp-----s~g-g~a------kg-~L~~Ei~aLg-- 66 (626)
-+|||+|||||..|+=+||.||++|.+|+|+|-..- ..|--..+. +.+ ++. ++ .+-+|+...-
T Consensus 2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~~~~~~~l~~~s~~~~~~l~~~~g~ 81 (377)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERETGE 81 (377)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 50489999952999999999997899599992899886546676642066764567877899999999999999987497
Q ss_pred -------HH------------HHHHHHHHHHHHHHHCC------------CCCC-CCCCHH-HHHHHHHHHHHHHHHHHC
Q ss_conf -------39------------99999886314887307------------8785-553467-878499999999999970
Q gi|254780808|r 67 -------GL------------MGRVADAAGIQFRVLNV------------KKGP-AVRGPR-TQADRELYRLAMQREILS 113 (626)
Q Consensus 67 -------g~------------m~~~aD~~~i~~r~ln~------------skGp-Av~alr-aqvDR~~fs~~vt~~l~~ 113 (626)
++ ..+.+.+.++..++|.. +..- |.+.+. .++|=..+.....+....
T Consensus 82 ~~~~~~G~l~~a~~~~~~~~~~~~~~~~~G~~~e~l~~~e~~~~~P~l~~~~~~~g~~~p~~G~v~p~~~~~al~~~a~~ 161 (377)
T PRK11259 82 PLFVQTGVLNLGPADSAFLANVARSARQHGLPHEVLDAAEIRRRWPEFRVPDNYIALFEPDSGFLRPELAIKAHLRLARE 161 (377)
T ss_pred CEEEEECCEEECCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHH
T ss_conf 52875074897387799999999999976998099589999986776578987799995898267499999999999997
Q ss_pred CCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 89968980-0101120258811322203586334454333466431013
Q gi|254780808|r 114 QENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161 (626)
Q Consensus 114 ~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~ 161 (626)
+ ..+++. .+|++|..+++.+. |.|..|. +.|..||+|+|......
T Consensus 162 ~-G~~i~~~~~V~~i~~~~~~v~-V~T~~G~-i~A~~VV~AaGaws~~l 207 (377)
T PRK11259 162 A-GAELLFNEPVTAIEHDDDGVT-VTTADGT-YSAKKLVVSAGTWVKEL 207 (377)
T ss_pred C-CCCEEECEEEEEEEECCCEEE-EEECCCE-EECCEEEECCCHHHHHH
T ss_conf 4-996581348886787499899-9808947-99797999756517878
No 62
>PRK12839 hypothetical protein; Provisional
Probab=98.79 E-value=1.1e-07 Score=74.14 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=35.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8763578898894268999999985899899998076
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+++|||||||+|.||.=||+++|..|.+|+|+|..+
T Consensus 6 ~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~ 42 (574)
T PRK12839 6 MKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKAS 42 (574)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 1771578998968999999999998899289996899
No 63
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=98.77 E-value=2.7e-08 Score=78.51 Aligned_cols=149 Identities=28% Similarity=0.428 Sum_probs=92.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC--------CCCCCCC----------------------------
Q ss_conf 7889889426899999998589989999807626012--------4667002----------------------------
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS--------MSCNPAI---------------------------- 50 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae--------l~Cnps~---------------------------- 50 (626)
||+|||||.+|+=+||.||++|.+|+|+|... +|. +.+ +.+
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~--~~~gaS~~~~g~i~-~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 77 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGD--LASGASGRNAGLLH-PGLRKERAPLLARLALESRDLWRELIEELGI 77 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCC--CCCCCCHHHHCEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999927999999999997899599994999--88750424026164-5757786189999989999999999875598
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----C----C----CCCCH-HHHHHHHHHHHHHHHH
Q ss_conf -------2112248999998630399999988631488730787----8----5----55346-7878499999999999
Q gi|254780808|r 51 -------GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK----G----P----AVRGP-RTQADRELYRLAMQRE 110 (626)
Q Consensus 51 -------gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk----G----p----Av~al-raqvDR~~fs~~vt~~ 110 (626)
|.+--..-..+++.+-..+ ....+.++.+++|+... - | |++.+ -+++|-..|...+.+.
T Consensus 78 ~~~~~~~g~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~a~~~~~~~~i~p~~~~~~l~~~ 156 (309)
T pfam01266 78 DCDFRRTGVLVLARDEAELDALRRLA-AALRALGLPVELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARA 156 (309)
T ss_pred CCCEEECCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEEECHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHHHHHHH
T ss_conf 75647646899946989999999999-99997399659946888776466567761489997578377512436799999
Q ss_pred HHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 970899689800-1011202588113222035863344543334664310134
Q gi|254780808|r 111 ILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162 (626)
Q Consensus 111 l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~ 162 (626)
+.+. +.+++.+ +|++|...++.+. |.|..|. +.++.||+|||.......
T Consensus 157 ~~~~-G~~i~~~~~V~~i~~~~~~~~-v~t~~g~-i~a~~VV~a~G~~s~~l~ 206 (309)
T pfam01266 157 AEAL-GVEILEGTEVTGLEREGGGVT-VETADGE-IRADKVVNAAGAWSDELL 206 (309)
T ss_pred HHHC-CCEEECCCEEEEEEEECCEEE-EEECCCE-ECCCEEEECCCHHHHHHH
T ss_conf 9877-969991768999999899999-9989970-858999997774268888
No 64
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.76 E-value=3e-08 Score=78.14 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=85.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Q ss_conf 63578898894268999999985899899998076260124667002211224899999863039-9999988631488-
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL-MGRVADAAGIQFR- 81 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~-m~~~aD~~~i~~r- 81 (626)
.+|||+|||||-|||=||+.+|+.|++|+|+|-+..- +-=+|+ |+.--.+-+.++.-.... +....+...+.+-
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~-G~k~~~---~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~ 77 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP-GAKPCC---GGGLSPRALEELIPDFDEEIERKVTGARIYFPG 77 (396)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCC---CCCCCHHHHHHHCCCCHHHHEEEEEEEEEECCC
T ss_conf 4788999897889999999998579929999657889-998767---666787788774555213321332026997157
Q ss_pred ---HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf ---7307878555346787849999999999997089968980-010112025881132220358633445433346643
Q gi|254780808|r 82 ---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 82 ---~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf 157 (626)
......+++ ..+||..|-+.+.+.-+.. ..++.. -.|+++..+++.+.++....+.++.++.||.|+|.-
T Consensus 78 ~~~~~~~~~~~~-----y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~AdG~~ 151 (396)
T COG0644 78 EKVAIEVPVGEG-----YIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred CEEEEECCCCCE-----EEEEHHHHHHHHHHHHHHH-CCEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEECCCCC
T ss_conf 426874488857-----9988899889999999983-9899818788999981781699995686699618999884857
No 65
>PRK07121 hypothetical protein; Validated
Probab=98.76 E-value=3e-07 Score=71.04 Aligned_cols=159 Identities=19% Similarity=0.283 Sum_probs=85.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-----CCC--C--CCCCCCC---CC--CHHHHHHHHHHHHH-
Q ss_conf 76357889889426899999998589989999807626-----012--4--6670022---11--22489999986303-
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGS--M--SCNPAIG---GL--GKGHLVREIDALDG- 67 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-----~ae--l--~Cnps~g---g~--akg~L~~Ei~aLgg- 67 (626)
..+|||+|||+|.||.=||+.+|+.|.+|+|+|..+.. ++. + .+++.+- |+ -+=.+...+...++
T Consensus 18 d~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~sgG~~~~~~~t~~q~~~g~~Ds~e~~~~~~~~~~~~ 97 (491)
T PRK07121 18 DDEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGD 97 (491)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 68769899896799999999999889928999548999950888377726079999999738999999999999997089
Q ss_pred -----HHHHHHHHHHHHHHHHCCC---------CCCC----------------CC--------CHH---HH--HH---HH
Q ss_conf -----9999998863148873078---------7855----------------53--------467---87--84---99
Q gi|254780808|r 68 -----LMGRVADAAGIQFRVLNVK---------KGPA----------------VR--------GPR---TQ--AD---RE 101 (626)
Q Consensus 68 -----~m~~~aD~~~i~~r~ln~s---------kGpA----------------v~--------alr---aq--vD---R~ 101 (626)
++-..++.+.--..+|..- -+++ +| ++| .+ -| -.
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~pr~h~~~~~g~~~~g~ 177 (491)
T PRK07121 98 GVDEEKIRRYCEGSVEHFDWLEGLGVPFERSYFPEKTSYPPNDEGLYYSGNEKVWPFAEHAKPAPRGHRVQGPGDTGGGA 177 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
T ss_conf 99999999999722999999997499745565776553567775420258522332101357667665321478776499
Q ss_pred HHHHHHHHHHHCCCCCEEE-HHHHCCCCCC-CCCEEEEEECC-C--CCCCC-CCCCCCCCCCCHHHH
Q ss_conf 9999999999708996898-0010112025-88113222035-8--63344-543334664310134
Q gi|254780808|r 102 LYRLAMQREILSQENLDVI-QGEVAGFNTE-KNIISSIVMQD-N--SMIRC-STVVLTTGTFLRGVI 162 (626)
Q Consensus 102 ~fs~~vt~~l~~~pni~i~-~~eV~~l~~~-~~~~~~v~~~~-g--~~~~~-~~viiatGtfl~g~~ 162 (626)
.+...+.+.++.. ++++. +-.+++|+.+ +++|+||.... + ..+.+ ++||||||-|-+..-
T Consensus 178 ~l~~~l~~~~~~~-gv~i~~~t~~~~Li~d~~G~V~Gv~~~~~~~~~~i~A~k~VILAtGGf~~n~~ 243 (491)
T PRK07121 178 MLMDPLAKRAAAL-GVQIRYETRATRLIVDGDGRVVGVRARRFGETGAIRARKGVVLAAGGFAMNRD 243 (491)
T ss_pred HHHHHHHHHHHHC-CCEEEECCEEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEECCCCCCCCHH
T ss_conf 9999999999857-98799677999999979998899999978916999814727984699687699
No 66
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.75 E-value=1.3e-07 Score=73.54 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHH----------
Q ss_conf 6357889889426899999998589989999807626012466700221122489999986303--9999----------
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG--LMGR---------- 71 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg--~m~~---------- 71 (626)
+.+||+|||||.||.=+|..+++.|++|.|+|..+..+.+-. .-..+.. .-++=++.||= -+..
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~---r~~~l~~-~~~~~L~~lG~~~~i~~~~~~~~~~~~ 76 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSP-NALRALERLGLWDRLEALGVPPLHVMV 76 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---EEEEECH-HHHHHHHHCCCHHHHHHCCCCCEEEEE
T ss_conf 985499999789999999999828996899907761135575---5999898-999999984990777615788603799
Q ss_pred HHHH--HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEEC-CCCCCCC
Q ss_conf 9988--6314887307878555346787849999999999997089968980-0101120258811322203-5863344
Q gi|254780808|r 72 VADA--AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQ-DNSMIRC 147 (626)
Q Consensus 72 ~aD~--~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~-~g~~~~~ 147 (626)
+.+. ..++|.....+- +.+...+-+..+.....+.+.+.||+++.. .+|+++..+++.+. +.+. +|..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a 151 (387)
T COG0654 77 VDDGGRRLLIFDAAELGR----GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDA 151 (387)
T ss_pred EECCCCEEEEECHHHCCC----CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEE-EEEECCCEEEEC
T ss_conf 965996389815221687----762799888999999999987189829995777999885397379-999039919975
Q ss_pred CCCCCCCCCC
Q ss_conf 5433346643
Q gi|254780808|r 148 STVVLTTGTF 157 (626)
Q Consensus 148 ~~viiatGtf 157 (626)
+-+|-|-|-.
T Consensus 152 ~llVgADG~~ 161 (387)
T COG0654 152 DLLVGADGAN 161 (387)
T ss_pred CEEEECCCCC
T ss_conf 9999889987
No 67
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.74 E-value=5.7e-08 Score=76.18 Aligned_cols=137 Identities=20% Similarity=0.300 Sum_probs=74.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 578898894268999999985899899998076--260124667002211224899999863039999998863148873
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL 83 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l 83 (626)
|||+|||||.||-.||..+|+.|.+|+|+|-.. -++----|-||---+....+...+.. +...++++
T Consensus 2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~GGtC~n~GCiPsK~Li~~a~~~~~~~~--------~~~~G~~~--- 70 (467)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGVGGAAVLTDCVPSKTLIASAEVRTELRR--------AADLGVRF--- 70 (467)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHH--------HHHCCEEC---
T ss_conf 8199987488999999999978795999967997846767783667999999999999976--------35258044---
Q ss_pred CCCCC-CCC--CCHH--HHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCC---CCCEEEEEEC--CCCCCCCCCCCCC
Q ss_conf 07878-555--3467--87849999999999997089968980010112025---8811322203--5863344543334
Q gi|254780808|r 84 NVKKG-PAV--RGPR--TQADRELYRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQ--DNSMIRCSTVVLT 153 (626)
Q Consensus 84 n~skG-pAv--~alr--aqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~---~~~~~~v~~~--~g~~~~~~~viia 153 (626)
..+ +.+ ..+. .+--...++..+...+++ .++++++++..=+... ....+.|.+. .+..+.++.+|||
T Consensus 71 --~~~~~~~d~~~~~~r~~~~~~~~~~~~~~~l~~-~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g~~~~i~a~~iIIA 147 (467)
T PRK07845 71 --DLEDAKVDLPQVNARVKRLARAQSADIRAQLER-AGVRVIAGRGRLDDDTPGLGPHRVKVTTADGTEEELEADVVLIA 147 (467)
T ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECEEEEC
T ss_conf --787555069999999999999866669999875-79689973899920665677877999935897589992969995
Q ss_pred CCC
Q ss_conf 664
Q gi|254780808|r 154 TGT 156 (626)
Q Consensus 154 tGt 156 (626)
||.
T Consensus 148 TGs 150 (467)
T PRK07845 148 TGA 150 (467)
T ss_pred CCC
T ss_conf 899
No 68
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1e-08 Score=81.44 Aligned_cols=144 Identities=18% Similarity=0.307 Sum_probs=85.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC---------HHHHHHHHHHHHH-----H
Q ss_conf 578898894268999999985899899998076260124667002---2112---------2489999986303-----9
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG---------KGHLVREIDALDG-----L 68 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a---------kg~L~~Ei~aLgg-----~ 68 (626)
.||+|||+|.||+=||+.+++.|.+|+|++-.+. ++||. ||++ .-|..--+.+=+| +
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~------~~~s~~A~gGi~~~~~~~Ds~e~h~~Dt~~~G~gl~d~~l 75 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSK------DSNSYLAQAGIAFPLLEGDSIRAHVLDTIRAGKYINDEEV 75 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC------CCCHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 8799989769999999999974996999958999------9514776112064028999999999999995589888999
Q ss_pred HHHHHHHHHHHHHHHCC---------CCCCCCCC-HHHH--HHHH--HHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCE
Q ss_conf 99999886314887307---------87855534-6787--8499--999999999970899689800101120258811
Q gi|254780808|r 69 MGRVADAAGIQFRVLNV---------KKGPAVRG-PRTQ--ADRE--LYRLAMQREILSQENLDVIQGEVAGFNTEKNII 134 (626)
Q Consensus 69 m~~~aD~~~i~~r~ln~---------skGpAv~a-lraq--vDR~--~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~ 134 (626)
+-..++.+.--.+.|.. ..| +++ +|.- -|+. .+...+.+....+ ++++++..+++|..+++.+
T Consensus 76 v~~l~~~a~~~i~~L~~~Gv~f~~~~~~G--Ghs~~R~~~~~~~tG~~i~~~L~~~~~~~-~v~~~~~~~~~l~~~dg~v 152 (464)
T PRK08401 76 VWNVISKSTEAYDFLTSLGVEFTGNELEG--GHSFPRVFTIKNETGKHLIPILEKHAREL-GVNFIRGFAEELAIKNGKA 152 (464)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCEEEHHHHHHHEEECCEE
T ss_conf 99999999999999997699887788789--74332026736765899999999999973-9857867657570228989
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 3222035863344543334664310
Q gi|254780808|r 135 SSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 135 ~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
.|+.. .+..+.+++||+|||-+-.
T Consensus 153 ~Gv~~-~ge~i~~~aVIlATGG~g~ 176 (464)
T PRK08401 153 YGVFL-NGELLKFDAVIIASGGFSG 176 (464)
T ss_pred EEEEE-CCEEEEECEEEECCCCCCC
T ss_conf 99998-8889885659989998653
No 69
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.73 E-value=2.2e-07 Score=72.00 Aligned_cols=35 Identities=43% Similarity=0.529 Sum_probs=32.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 63578898894268999999985899899998076
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
.+|||+|||+|+||.=||+.+|+.|.+|+|+|...
T Consensus 13 ~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~ 47 (576)
T PRK12843 13 ADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTE 47 (576)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88286998968899999999998899489997979
No 70
>KOG1298 consensus
Probab=98.73 E-value=9.6e-09 Score=81.64 Aligned_cols=150 Identities=22% Similarity=0.346 Sum_probs=99.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---HHHC-CCCCCCCCCCCC------CHHHHHHHHHHH--HHH-H
Q ss_conf 76357889889426899999998589989999807---6260-124667002211------224899999863--039-9
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTI-GSMSCNPAIGGL------GKGHLVREIDAL--DGL-M 69 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~---~~~~-ael~Cnps~gg~------akg~L~~Ei~aL--gg~-m 69 (626)
...+||||||||-|||--|+++||-|-+|..+|-+ ||+| ||+-- =||. |-..-+..|||- -|. +
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQ---PGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i 119 (509)
T KOG1298 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQ---PGGYLALSKLGLEDCVEGIDAQRVTGYAI 119 (509)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC---CCHHHHHHHHCHHHHHHCCCCEEEEEEEE
T ss_conf 875447998886227899999850785799996345561678877608---50668998708787763202237522699
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC----CCC
Q ss_conf 9999886314887307878555346787849999999999997089968980010112025881132220358----633
Q gi|254780808|r 70 GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN----SMI 145 (626)
Q Consensus 70 ~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g----~~~ 145 (626)
-+-..++.+.|-.=|-.--|+|++. ---.|-+.++++..+.||+++.|+.|.+|+.+++.+.||..... .++
T Consensus 120 fk~gk~v~~pyP~~~f~~d~~GrsF----hnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~ 195 (509)
T KOG1298 120 FKDGKEVDLPYPLKNFPSDPSGRSF----HNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEA 195 (509)
T ss_pred EECCCEEECCCCCCCCCCCCCCCEE----ECCHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEEECCCCCEEEE
T ss_conf 8479355335777678887432012----236999999998724897088610278787316859758986278855787
Q ss_pred CCCCCCCCCCCCCH
Q ss_conf 44543334664310
Q gi|254780808|r 146 RCSTVVLTTGTFLR 159 (626)
Q Consensus 146 ~~~~viiatGtfl~ 159 (626)
.|.-+|++-|-|.+
T Consensus 196 ~ApLTvVCDGcfSn 209 (509)
T KOG1298 196 FAPLTVVCDGCFSN 209 (509)
T ss_pred ECCEEEEECCHHHH
T ss_conf 35558994125688
No 71
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.72 E-value=1.9e-07 Score=72.43 Aligned_cols=169 Identities=24% Similarity=0.355 Sum_probs=98.4
Q ss_pred CCCCC---CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCCCCH---------HHHHHHHHHHHH
Q ss_conf 87635---788988942689999999858998999980762601246670--0221122---------489999986303
Q gi|254780808|r 2 INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGK---------GHLVREIDALDG 67 (626)
Q Consensus 2 ~~~~~---dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg~ak---------g~L~~Ei~aLgg 67 (626)
|++.+ ||+|||.|+||+-||+.+++. .+|.+++-.+-. + ||- |=||+|. .|+---+.|=.|
T Consensus 1 m~~~~~~~dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~--~--~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~g 75 (518)
T COG0029 1 MNTDFEHPDVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG--E--SSSYWAQGGIAAALSEDDSPELHVADTLAAGAG 75 (518)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCC--C--CCCHHHCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 96436788589988759999999737777-847999577788--7--623654375576617999878888889985477
Q ss_pred HHH-----HHHH--HHHHHHHHH-C------CC-CC------CCCCCHH----H--HHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 999-----9998--863148873-0------78-78------5553467----8--784999999999999708996898
Q gi|254780808|r 68 LMG-----RVAD--AAGIQFRVL-N------VK-KG------PAVRGPR----T--QADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 68 ~m~-----~~aD--~~~i~~r~l-n------~s-kG------pAv~alr----a--qvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
++- .++. ..+|| .| + ++ .| -++++-| | +.-|.. -....+.+.+||||+++
T Consensus 76 lcD~~aV~~iv~~~~~ai~--~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I-~~~L~~~v~~~p~I~v~ 152 (518)
T COG0029 76 LCDEEAVEFIVSEAPEAIE--WLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEI-MTALLKKVRNRPNITVL 152 (518)
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHH-HHHHHHHHHCCCCCEEE
T ss_conf 7869999999986899999--99973987767888745443101357755788568760899-99999998448995898
Q ss_pred HH-HHCCCCCCCC-CEEEEEECCC----CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 00-1011202588-1132220358----6334454333466431013444320233222475111331000010112005
Q gi|254780808|r 121 QG-EVAGFNTEKN-IISSIVMQDN----SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG 194 (626)
Q Consensus 121 ~~-eV~~l~~~~~-~~~~v~~~~g----~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~ 194 (626)
++ ++.+|..+++ .+.|+.+... ..+.++.||||||-+-. -
T Consensus 153 e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~----------------------------------l 198 (518)
T COG0029 153 EGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG----------------------------------L 198 (518)
T ss_pred ECCHHHHHHHCCCCEEEEEEEECCCCEEEEEECCEEEEECCCCCC----------------------------------C
T ss_conf 662236660247834767999648981799726848992488763----------------------------------1
Q ss_pred CCCCCCCCHHHHCHHHHH
Q ss_conf 444454410110000134
Q gi|254780808|r 195 RLKTGTPARLDGKTIIWD 212 (626)
Q Consensus 195 r~ktgtppri~~~sidf~ 212 (626)
+..|-+|.-..++-|...
T Consensus 199 y~~TTNp~~~~GdGIamA 216 (518)
T COG0029 199 YAYTTNPKGSTGDGIAMA 216 (518)
T ss_pred CCCCCCCCCCCCCHHHHH
T ss_conf 246679866664199999
No 72
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=2.2e-07 Score=71.97 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=33.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 7635788988942689999999858998999980762
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
+.+|||||||+|+||.=||..+|+.|.+|+|+|..+.
T Consensus 8 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~ 44 (579)
T PRK06134 8 DLECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPV 44 (579)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 5771869989678999999999987994899979998
No 73
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=98.72 E-value=2.2e-07 Score=71.98 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=81.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC----CCCCC-------CHHHHHHHHHHHHH------HH
Q ss_conf 788988942689999999858998999980762601246670----02211-------22489999986303------99
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP----AIGGL-------GKGHLVREIDALDG------LM 69 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp----s~gg~-------akg~L~~Ei~aLgg------~m 69 (626)
||+|||+|+||.-||..+|+.|.+|+|+|..+..=+-..|+- +.+.. -.-....++...++ ++
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 80 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHPYV 80 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 98999886999999999997899489997899999768884523100488435157999999999999965887889999
Q ss_pred HHHHHHHHHHHHHHCC---------CCCCCCC----CH----H----H-------HHHHHHHHHHHHHHHHCCCCCEEE-
Q ss_conf 9999886314887307---------8785553----46----7----8-------784999999999999708996898-
Q gi|254780808|r 70 GRVADAAGIQFRVLNV---------KKGPAVR----GP----R----T-------QADRELYRLAMQREILSQENLDVI- 120 (626)
Q Consensus 70 ~~~aD~~~i~~r~ln~---------skGpAv~----al----r----a-------qvDR~~fs~~vt~~l~~~pni~i~- 120 (626)
-..++.+.=...+|.. ..++..+ .. + . ..+-...-..+.+.++.+ .+++.
T Consensus 81 ~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-gv~i~~ 159 (401)
T pfam00890 81 EAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATWRTPHDVADRRRGTLGTGHALLARLLEGALKR-GIDFQP 159 (401)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEE
T ss_conf 9999867999999998399777567787111335666666502103545445567888999999999999976-998993
Q ss_pred HHHHCCCCCCCCCEEEEEECCC---C--CCCCC-CCCCCCCCCCHHH
Q ss_conf 0010112025881132220358---6--33445-4333466431013
Q gi|254780808|r 121 QGEVAGFNTEKNIISSIVMQDN---S--MIRCS-TVVLTTGTFLRGV 161 (626)
Q Consensus 121 ~~eV~~l~~~~~~~~~v~~~~g---~--~~~~~-~viiatGtfl~g~ 161 (626)
+-++++|+.+++.++||..... . .+.++ +||+|||-|-...
T Consensus 160 ~t~~~~Li~d~g~V~Gv~~~~~~~g~~~~i~A~kaVIlAtGGf~~n~ 206 (401)
T pfam00890 160 RHPADDLIVEDGRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRNA 206 (401)
T ss_pred CCEEEEEEEECCEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHH
T ss_conf 86961569828858999999678980999995106799668813448
No 74
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=98.71 E-value=4e-08 Score=77.28 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=95.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-HHHCCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHHHHH
Q ss_conf 57889889426899999998589989999807-62601246670022112248999998630-----------3999999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVREIDALD-----------GLMGRVA 73 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~~~~ael~Cnps~gg~akg~L~~Ei~aLg-----------g~m~~~a 73 (626)
|||||||||=|||=||+.+|+.|.+|+|+|-. .-+.....|-=.|..- ...++...+ ..+..-.
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~----~~~~~~~~~~d~~~L~~~P~~~~~~~~ 76 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPR----VLEELVLPGPDEYALKDIPKELIVNEV 76 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCH----HHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9389982774689999999956973889850450798860057766700----131136788886130147743454200
Q ss_pred H----HHHHHH---HHHCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC--
Q ss_conf 8----863148---873078785----553467878499999999999970899689800101120258811322203--
Q gi|254780808|r 74 D----AAGIQF---RVLNVKKGP----AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-- 140 (626)
Q Consensus 74 D----~~~i~~---r~ln~skGp----Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-- 140 (626)
. .+.+.. +.++..+ + ...+. + +||+.|=+.+-+.-..+---.....+|++.+..+...+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-v-~~R~~fD~~L~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~dd 153 (343)
T TIGR02032 77 RTLFNGARIISPNGDKVEIPI-EELAFTEEAY-V-IDRDAFDEFLAERAQEAGAELRLGTTVLDVEIEDKVVVEVRGGDD 153 (343)
T ss_pred HHEECCCEEEECCCCEEEECC-HHHCCCCEEE-E-EECHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCC
T ss_conf 110014338807863221022-2112474378-9-852674189999997578067526376112761836899726867
Q ss_pred -CCCCCCCCCCCCCCCCCC
Q ss_conf -586334454333466431
Q gi|254780808|r 141 -DNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 141 -~g~~~~~~~viiatGtfl 158 (626)
...++.|+.||.|.|.-.
T Consensus 154 ~~~~~~~a~~vigADG~~S 172 (343)
T TIGR02032 154 ESKGEVTAKIVIGADGARS 172 (343)
T ss_pred CCCCEEECCEEEECCCCCC
T ss_conf 5660462558997168878
No 75
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=98.70 E-value=3.7e-08 Score=77.46 Aligned_cols=397 Identities=23% Similarity=0.236 Sum_probs=212.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE----------------------CCH---------HHC-----------
Q ss_conf 63578898894268999999985899899998----------------------076---------260-----------
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----------------------HKT---------STI----------- 41 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~----------------------~~~---------~~~----------- 41 (626)
.+|||||||||=||--||+++|+.|++|+.+| |.| ||+
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA 80 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA 80 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 94227988687568999998632792388983136886411223445788851778798863640310005652124689
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHCCCCC-CCCCCHHHHHHHH-------HHHHHH
Q ss_conf 12466700221122489999986303-----999999886-314887307878-5553467878499-------999999
Q gi|254780808|r 42 GSMSCNPAIGGLGKGHLVREIDALDG-----LMGRVADAA-GIQFRVLNVKKG-PAVRGPRTQADRE-------LYRLAM 107 (626)
Q Consensus 42 ael~Cnps~gg~akg~L~~Ei~aLgg-----~m~~~aD~~-~i~~r~ln~skG-pAv~alraqvDR~-------~fs~~v 107 (626)
.|.-|..++- -|-||.-+|= .-||+.... +=| ...-.|| +|-++= |-.||- +|.+.+
T Consensus 81 iE~Mc~~ape------AV~ELEhmG~PFsRT~~GkIyQR~FGG~--t~dfGK~g~v~R~C-~aADRTGH~~LhTLYQ~nv 151 (615)
T TIGR01816 81 IEYMCKEAPE------AVLELEHMGMPFSRTEEGKIYQRPFGGH--TRDFGKGGAVERAC-AAADRTGHAILHTLYQQNV 151 (615)
T ss_pred HHHHHHHHHH------HHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHH
T ss_conf 9886231357------7876652777978888983320778697--52115633232420-0014202579999876664
Q ss_pred HHHHHCCCCCEEEHHHHCCCCCC-CCC----EEEEE-----ECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 99997089968980010112025-881----13222-----035863344543334664310134443202332224751
Q gi|254780808|r 108 QREILSQENLDVIQGEVAGFNTE-KNI----ISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS 177 (626)
Q Consensus 108 t~~l~~~pni~i~~~eV~~l~~~-~~~----~~~v~-----~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~ 177 (626)
+ |.--.+++=-+.||+.+ ++. +.||. |..--.+.||+||+|||- .||+...
T Consensus 152 k-----~~t~FF~E~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG--------------~GR~Y~s 212 (615)
T TIGR01816 152 K-----ADTSFFNEFYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGG--------------YGRIYKS 212 (615)
T ss_pred H-----CCCCEEEHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECC--------------CCHHHHH
T ss_conf 3-----18744750221104652578958879988987605888889954107897378--------------6405676
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHC
Q ss_conf 1133100001011200544445441011000013443211478766877743565780-000000012320014777640
Q gi|254780808|r 178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMEN 256 (626)
Q Consensus 178 ~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~-~q~~~~~~~t~~~~~~~~~~~ 256 (626)
.+.++...=.- -+|-+-+ -=+..++-|+.+++.- --.=|-+||-. |
T Consensus 213 ttnA~t~TGDG------------------~gi~~Ra------GlPlqDmEF~QFHPTGiagaG~LiTEG~-------R-- 259 (615)
T TIGR01816 213 TTNAHTLTGDG------------------VGIVLRA------GLPLQDMEFWQFHPTGIAGAGVLITEGV-------R-- 259 (615)
T ss_pred HHHHHHHHHHH------------------HHHHHHC------CCCCCCCCCCCCCHHHHHCCCEEEEECC-------C--
T ss_conf 64456552136------------------8888726------8871132231237033410872675012-------1--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----EEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 2457541443235642225532123356764334520----130157877645434776668988999999875434001
Q gi|254780808|r 257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI----FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV 332 (626)
Q Consensus 257 ~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~V----qLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnA 332 (626)
.+-..+.++.=.++.-||-|.+-|---|- ==-++.+ -=|==|.+.+-+||. =++|+. ..+-+.+||--+-
T Consensus 260 GEGG~L~Na~GERFMERYAP~~KDLAsRD-vVaRsM~~Ei~EGRGvG~~KDhV~l~--l~HLg~---E~l~~kLPgI~E~ 333 (615)
T TIGR01816 260 GEGGILLNANGERFMERYAPTAKDLASRD-VVARSMTLEIREGRGVGPNKDHVYLK--LDHLGE---EVLEEKLPGITEL 333 (615)
T ss_pred CCCCEEECCCCCCCHHCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCEEEEE--ECCCCH---HHHHHHCCCHHHH
T ss_conf 47755246887510200167510036863-64662588764178969675889886--134885---7886528775489
Q ss_pred CEEEECCHHHHCCCC--HH----------H-----HH--HHHHHHCCCEEEEEEEEECCCHHHHHHHH------------
Q ss_conf 001100012110235--45----------6-----56--77654033415662133043346666667------------
Q gi|254780808|r 333 NIIRPGYAIEYDYIN--PK----------E-----LF--PTLETKKISGLFLAGQINGTTGYEEAAAQ------------ 381 (626)
Q Consensus 333 ef~R~Gy~ieyd~~~--P~----------~-----L~--~tLe~k~~~~LffAGQI~GteGYeEAAAq------------ 381 (626)
=..=.|+-+=-|-++ || - |. -.=+..-++|||-|| |-||++
T Consensus 334 a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~G--------E~ACvSVHGANRLGtNSL 405 (615)
T TIGR01816 334 ARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAG--------EAACVSVHGANRLGTNSL 405 (615)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH--------HHHHHEECCCCCCCHHHH
T ss_conf 998638885107868988634157673215643488642478986102376642--------452000025320211245
Q ss_pred ------HHHHHHHHHHHCC-CCCC-CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH-HHHHH
Q ss_conf ------7899999874203-3456-5465321079999998860787740244200012212115787136688-87877
Q gi|254780808|r 382 ------GLVAGINSARKSN-KLDC-ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMK 452 (626)
Q Consensus 382 ------Gl~AGiNa~~~~~-~~~p-~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt-~~g~~ 452 (626)
|==||+.++-.++ +.+. =.++-.++-+=--+|||-...=.| .=||+|+. ....+
T Consensus 406 LDLVVFGR~ag~~~~~~~ke~~~~~~~~~n~~e~~~~~~~~l~~~~g~~-----------------~va~lR~~LQ~smq 468 (615)
T TIGR01816 406 LDLVVFGRAAGLSAAEYIKEGSDFKPLPENAEEESVKRLDDLREATGNE-----------------RVADLRRELQRSMQ 468 (615)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-----------------HHHHHHHHHHHHHH
T ss_conf 5788988999999999713777877879770889999987664115870-----------------27899999888886
Q ss_pred H--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHCC
Q ss_conf 3--788389999999999999999998763368832--67662010
Q gi|254780808|r 453 L--GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSSTSIS 494 (626)
Q Consensus 453 ~--GLv~~~r~~~~~~k~~~~~~~~~~l~~~~~~p~--~~~~~~~~ 494 (626)
. |+- ..-+.+++-..+|.+++++++++++.-+ .||...+.
T Consensus 469 ~~~gVF--Rt~~~l~~gv~~i~~l~~R~k~~~i~Dks~~~Nt~lvE 512 (615)
T TIGR01816 469 NHAGVF--RTGELLQKGVGEISELKERYKNVKINDKSKVWNTDLVE 512 (615)
T ss_pred HCEEEE--ECHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHH
T ss_conf 150564--54678999999999987556414410056200568899
No 76
>PRK07608 hypothetical protein; Provisional
Probab=98.70 E-value=2e-07 Score=72.23 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=90.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076260--12466700221122489999986303999999886314
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI--GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~--ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
.|.+|||+|||||.+|.=+|+.||+.|++|.++|.++..- +...+.+=.-++..+ -++=++.||=. ... +...++
T Consensus 2 ~~m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~-s~~~L~~lGv~-~~l-~~~~~~ 78 (389)
T PRK07608 2 YHMKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPADDAWDSRVYAISPS-SQAFLERLGVW-QAL-DAARLA 78 (389)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECHH-HHHHHHHCCCH-HHH-HHHCCC
T ss_conf 989998899990689999999998379988999589987666666767517898899-99999987985-455-543264
Q ss_pred ----HHHHCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf ----887307878--------55534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r 80 ----FRVLNVKKG--------PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC 147 (626)
Q Consensus 80 ----~r~ln~skG--------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~ 147 (626)
.++-....| .....+..-+.+........+.+...+++++...+++++..+++.+ .+.+.+|..+.+
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~v-~v~~~~g~~i~a 157 (389)
T PRK07608 79 PVYDMRVYGDAHGRLHFSAYQAAVPQLAWIVESSLIERALDAALRFQGNLTWFDARAQGLDVTPDAA-TLTLSDGQVLEA 157 (389)
T ss_pred EEEEEEEECCCCCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCE-EEEECCCCEEEE
T ss_conf 0678999647785463463335898414441079999999999861898699887888999729917-999889989996
Q ss_pred CCCCCCCCC
Q ss_conf 543334664
Q gi|254780808|r 148 STVVLTTGT 156 (626)
Q Consensus 148 ~~viiatGt 156 (626)
+-+|-|-|.
T Consensus 158 ~llVgADG~ 166 (389)
T PRK07608 158 DLVVGADGA 166 (389)
T ss_pred EEEEEECCC
T ss_conf 589996699
No 77
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.69 E-value=4.9e-07 Score=69.48 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=83.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-C--------CCCCCC-CCCC---CC--CHHHHHHH-HHHHH--
Q ss_conf 357889889426899999998589989999807626-0--------124667-0022---11--22489999-98630--
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-I--------GSMSCN-PAIG---GL--GKGHLVRE-IDALD-- 66 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-~--------ael~Cn-ps~g---g~--akg~L~~E-i~aLg-- 66 (626)
+|||+|||+|.||-=||+++|+.|.+|+|+|..+.. + +.|.+. +.+- |+ -+-+..++ |..-+
T Consensus 2 e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s~G~~~~~~t~~Qk~~Gi~DS~e~~~~d~~~~a~~~ 81 (549)
T PRK12834 2 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSFGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGFD 81 (549)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 99989989678999999999987992799966888898846776177876689999998489999999999999752789
Q ss_pred -------HHHHHH-HHH-HHHHHHHHCC------------------CC--CCCCCCHHHH-------HHHHHHHHHHHHH
Q ss_conf -------399999-988-6314887307------------------87--8555346787-------8499999999999
Q gi|254780808|r 67 -------GLMGRV-ADA-AGIQFRVLNV------------------KK--GPAVRGPRTQ-------ADRELYRLAMQRE 110 (626)
Q Consensus 67 -------g~m~~~-aD~-~~i~~r~ln~------------------sk--GpAv~alraq-------vDR~~fs~~vt~~ 110 (626)
-...+. .|. ++-.+.+|.. .. |..+ +|.. ---..|.+.+.+.
T Consensus 82 ~~~d~~~~~~~~~~~~~~~~e~~~wL~~~Gv~f~~~~~~~~~~~~~~~g~g~s~--pr~h~~~~~G~~~~~~~~~~~~~~ 159 (549)
T PRK12834 82 RPEDHWPRQWAEAYVEFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSV--PRFHITWGTGPGVVEPFVRRVREA 159 (549)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 851367899999998751111789999669862103441124775567888877--773556787716999999999987
Q ss_pred HHCCCCCEEE-HHHHCCCCCCCCCEEEEEEC---C---------------CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9708996898-00101120258811322203---5---------------8633445433346643101344
Q gi|254780808|r 111 ILSQENLDVI-QGEVAGFNTEKNIISSIVMQ---D---------------NSMIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 111 l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~---~---------------g~~~~~~~viiatGtfl~g~~~ 163 (626)
.+ ..++++. +-.|++|+.+++.++||.-. . ...+.+++||||||-|.+..-.
T Consensus 160 ~~-~~~v~~~~~t~a~~Li~~~g~V~GV~~~~~~~~~~~~g~~~~~~~~g~~~i~AkaVILATGGf~~N~em 230 (549)
T PRK12834 160 AA-RGLVTFRFRHRVDELIVTNGAVTGVRGTVLEPSDAPRGAASSRTVVGEFEFRAQAVIVTSGGIGGNHEL 230 (549)
T ss_pred HH-CCCEEEEECCEEEEEEEECCEEEEEEEEECCCCCHHCCCCCCCCCCCEEEEECCEEEECCCCCCCCHHH
T ss_conf 41-697089956885799975998998886652566211044333334440799789699908987649999
No 78
>PRK07045 putative monooxygenase; Reviewed
Probab=98.69 E-value=1.8e-08 Score=79.77 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=90.3
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----
Q ss_conf 98763578898894268999999985899899998076260----1246670022112248999998630399999----
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVREIDALDGLMGRV---- 72 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~----ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~---- 72 (626)
|-++.+||+|||||.||.=+|+.|+|.|++|.++|..+..- |...-.|++.-+-+=-|..|+.+.|+.+...
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCEEEEEEEE
T ss_conf 99899858999928899999999986799899990899877778634889999999998869689986078514579995
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCE-EEEEECCCCCCCCCCC
Q ss_conf 988631488730787855534678784999999999999708996898-00101120258811-3222035863344543
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNII-SSIVMQDNSMIRCSTV 150 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~-~~v~~~~g~~~~~~~v 150 (626)
.|...+ ..++.+..++..-. ..+.+....+...+.+...|++++. ...|+.+..+...+ ..+.+.+|..+.+..|
T Consensus 81 ~~g~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~~~~adlv 157 (388)
T PRK07045 81 HDKELI--ASLDYRSASALGYF-ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred CCCCEE--EEECCCCCCCCCCE-EEECHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEE
T ss_conf 089579--87445556666838-983099999999999745898199979899999984992599999589979974099
Q ss_pred CCCCCCCC
Q ss_conf 33466431
Q gi|254780808|r 151 VLTTGTFL 158 (626)
Q Consensus 151 iiatGtfl 158 (626)
|-|-|...
T Consensus 158 IGADG~~S 165 (388)
T PRK07045 158 VGADGARS 165 (388)
T ss_pred EECCCCCC
T ss_conf 99568862
No 79
>PRK09126 hypothetical protein; Provisional
Probab=98.69 E-value=1.4e-07 Score=73.44 Aligned_cols=150 Identities=20% Similarity=0.343 Sum_probs=88.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC--CCH-HHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9876357889889426899999998589989999807626012466700221--122-489999986303999999886-
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--LGK-GHLVREIDALDGLMGRVADAA- 76 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg--~ak-g~L~~Ei~aLgg~m~~~aD~~- 76 (626)
||+ |||+|||||.+|.=+|+.||+.|++|.++|.++..- ..+|+..| ++= ..=++-++.||= -..+.+..
T Consensus 1 Mm~--~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~---~~~~~~~~r~~al~~~s~~~L~~lG~-~~~l~~~~~ 74 (392)
T PRK09126 1 MMH--SDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA---LADPAFDGREIALTHASREILQRLGA-WDRIPEAEI 74 (392)
T ss_pred CCC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCCCCEEEEECHHHHHHHHHCCC-HHHHHHHCC
T ss_conf 998--999999925899999999986899899990898533---45778886289868999999998789-667775076
Q ss_pred -HHH-HHHHCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCC
Q ss_conf -314-8873078---------785553467878499999999999970899689800-1011202588113222035863
Q gi|254780808|r 77 -GIQ-FRVLNVK---------KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSM 144 (626)
Q Consensus 77 -~i~-~r~ln~s---------kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~ 144 (626)
.++ .++.+.. .+.....+..-+......+...+.+..+|++++..+ +|+++..++.. +.+.+.+|..
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~v~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~~~~g~~ 153 (392)
T PRK09126 75 SPLRDAKVLNGRSPFALTFDARGTGADALGYLVPNHLIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDG-AQVTLANGRR 153 (392)
T ss_pred CCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCE-EEEEECCCCE
T ss_conf 741468995288750475047556766650002199999999999985899699869888999975980-5999858988
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3445433346643
Q gi|254780808|r 145 IRCSTVVLTTGTF 157 (626)
Q Consensus 145 ~~~~~viiatGtf 157 (626)
+.++-+|.|-|..
T Consensus 154 i~a~llVgADG~~ 166 (392)
T PRK09126 154 LTARLLVAADSRF 166 (392)
T ss_pred EEEEEEEEECCCC
T ss_conf 8877999806888
No 80
>PRK06185 hypothetical protein; Provisional
Probab=98.67 E-value=1.6e-08 Score=80.03 Aligned_cols=146 Identities=17% Similarity=0.267 Sum_probs=86.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076260----12466700221122489999986303999999886
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA 76 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~----ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~ 76 (626)
+|.++.||+|||||.||.=+|+.|||.|++|.++|.+++.. |.....++ ++-++.|| +.-...+..
T Consensus 2 ~~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~Rg~~i~p~t---------l~iL~~lG-l~~~l~~~~ 71 (409)
T PRK06185 2 PMVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPST---------LELMDELG-LLERFLELP 71 (409)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHH---------HHHHHHCC-CHHHHHHCC
T ss_conf 98878998999918899999999997799999991899987786189878999---------99999879-868997367
Q ss_pred -----HHHH-------HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEE--ECC
Q ss_conf -----3148-------873078785553467878499999999999970899689800-1011202588113222--035
Q gi|254780808|r 77 -----GIQF-------RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIV--MQD 141 (626)
Q Consensus 77 -----~i~~-------r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~--~~~ 141 (626)
.+++ ...+-++-|...--.+.+.+..|-+.+.+.....|++++..+ +|+++..+++.+.+|. +.+
T Consensus 72 ~~~~~~~~~~~~g~~~~~~d~~~l~~~~~~~~~~~q~~ll~~L~~~a~~~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~d 151 (409)
T PRK06185 72 HSKVRTLRFDIGGRTVTLADFSRLPTRYPYIAMMPQWDFLDFLAEKASRYPTFTLRMGAEVTGLIEEGGRVAGVRYRTPD 151 (409)
T ss_pred CCCEEEEEEEECCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEECCCEEEEEEECCC
T ss_conf 87334799995993899743001688888427701899999999998518995999688889999959908999998489
Q ss_pred CC-CCCCCCCCCCCCC
Q ss_conf 86-3344543334664
Q gi|254780808|r 142 NS-MIRCSTVVLTTGT 156 (626)
Q Consensus 142 g~-~~~~~~viiatGt 156 (626)
|. .+.++-+|-|-|-
T Consensus 152 g~~~i~adlvVGADG~ 167 (409)
T PRK06185 152 GELEIRADLTVGADGR 167 (409)
T ss_pred CCEEEEEEEEEECCCC
T ss_conf 8589997299973899
No 81
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.66 E-value=5.3e-07 Score=69.27 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=83.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC-----------CCCCCCCCC--CC--CHHHHHHHHHHH-H
Q ss_conf 7635788988942689999999858998999980762601-----------246670022--11--224899999863-0
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-----------SMSCNPAIG--GL--GKGHLVREIDAL-D 66 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a-----------el~Cnps~g--g~--akg~L~~Ei~aL-g 66 (626)
++++||+|||+| ||-=||..+|+.|++|+|+|..+ .+| ..+||+-.. |+ -+-...+.+.++ |
T Consensus 7 D~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~-~~GG~sa~sgGg~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~ 84 (515)
T PRK12837 7 DEEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATD-KFGGTTAYSGGGGMWFPCNPVLQRAGTDDTIEDALTYYHAVVG 84 (515)
T ss_pred CCCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 787397998906-99999999998799889997889-8881887458876650799999975887899999999998727
Q ss_pred H-----HHHHHHHHHHHHHHHHCCCCC-------------------------------CCCCCH------HHHHH-----
Q ss_conf 3-----999999886314887307878-------------------------------555346------78784-----
Q gi|254780808|r 67 G-----LMGRVADAAGIQFRVLNVKKG-------------------------------PAVRGP------RTQAD----- 99 (626)
Q Consensus 67 g-----~m~~~aD~~~i~~r~ln~skG-------------------------------pAv~al------raqvD----- 99 (626)
+ ++...++.++-...+|....| |..... |..+|
T Consensus 85 ~~~~~~l~~~~~~~~~~~i~wL~~~~~~~f~~~~~~dy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (515)
T PRK12837 85 DRTPRELQETYVRGGAPLIEYLEQDEHFQFAELPWPDYFGKAPKARADGQRHIAPKPLPVAAAGELREQIRGPLDTDRLG 164 (515)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHCC
T ss_conf 86739999999972799999998575851455466543577877756785212565666011301454304765433306
Q ss_pred ----------HHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEEC-CC--CCCCC-CCCCCCCCCCCHHHH
Q ss_conf ----------99999999999970899689800-101120258811322203-58--63344-543334664310134
Q gi|254780808|r 100 ----------RELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQ-DN--SMIRC-STVVLTTGTFLRGVI 162 (626)
Q Consensus 100 ----------R~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~-~g--~~~~~-~~viiatGtfl~g~~ 162 (626)
+.+.. ...+.+...+++++..+ .+++|+.++++|+||... .| ..+.+ ++||||||-|-+..-
T Consensus 165 ~~~~~~~~gG~~l~~-~~l~~~~~~~gv~i~~~t~~~~Li~d~g~V~Gv~a~~~g~~~~i~A~kgVILAtGGf~~N~e 241 (515)
T PRK12837 165 APPPDYLTGGRALIG-RFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERDGERVRVRARRGVLLAAGGFEQNDD 241 (515)
T ss_pred CCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCEEEECCCCCCCCHH
T ss_conf 876322146699999-99999876169669926733788842985999999869917999724658990689654899
No 82
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.66 E-value=1.8e-07 Score=72.54 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=67.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
||+|||||.||..||+.++|.|.+|+|++.+........|-|..-+..
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~-------------------------------- 48 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLE-------------------------------- 48 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCC--------------------------------
T ss_conf 999999769999999999849997999937999357557747711645--------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 78555346787849999999999997089968980-01011202588113222035863344543334664
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
. .+...+.....+.+.. .+++++. .+|+.+..+... |.+..|..+.++.+|||||.
T Consensus 49 ----~------~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~ 105 (277)
T pfam07992 49 ----A------AEVGKLDLRPLEQYKD-EGIEVLLGTGVTAIDKAGKK---VTLDDGKELTYDKLVIATGA 105 (277)
T ss_pred ----C------CCHHHHHHHHHHHHHH-CCCEEEECCEEEEEECCCCE---EEECCCCEEECCEEEECCCC
T ss_conf ----4------3314561899999987-59799968779999789998---99878939985999998799
No 83
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.65 E-value=2.1e-07 Score=72.10 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC---------HHHHHHHHHHHHH----
Q ss_conf 63578898894268999999985899899998076260124667002---2112---------2489999986303----
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG---------KGHLVREIDALDG---- 67 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a---------kg~L~~Ei~aLgg---- 67 (626)
.+.||+|||+|.||+=||+++++. .+|.|++-.+-. .+||. ||++ .-|..--+.+=+|
T Consensus 2 ~~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~-----~~~s~~a~Ggi~a~~~~~Ds~e~~~~Dt~~aG~gl~d~ 75 (510)
T PRK08071 2 PSADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKR-----NSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE 75 (510)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCC-----CCCHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 979999999659999999983658-987999798999-----97425645443171389999999999999963788889
Q ss_pred -HHHHHHHHHHHHHHHHCC--------CCCC------CCCC-HHH---HHHHHHHHHHHHHHHHC--CCCCEEEH-HHHC
Q ss_conf -999999886314887307--------8785------5534-678---78499999999999970--89968980-0101
Q gi|254780808|r 68 -LMGRVADAAGIQFRVLNV--------KKGP------AVRG-PRT---QADRELYRLAMQREILS--QENLDVIQ-GEVA 125 (626)
Q Consensus 68 -~m~~~aD~~~i~~r~ln~--------skGp------Av~a-lra---qvDR~~fs~~vt~~l~~--~pni~i~~-~eV~ 125 (626)
++-..++.+.-..+.|-. ..|. .++. .|. -.|+ -.+.+...|.. .++|++.. -.|+
T Consensus 76 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~ggh~~~R~~~~~gd~--tG~~i~~~l~~~~~~~i~i~~~~~~~ 153 (510)
T PRK08071 76 EAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDA--TGKNLLEHLIQEVVPHVTVVEQEMVI 153 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC--CHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 9999999989999999997599651288864512527751686014217763--03899999999705881899747988
Q ss_pred CCCCCCCCEEEEEECC--C--CCCCCCCCCCCCCCCCH
Q ss_conf 1202588113222035--8--63344543334664310
Q gi|254780808|r 126 GFNTEKNIISSIVMQD--N--SMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 126 ~l~~~~~~~~~v~~~~--g--~~~~~~~viiatGtfl~ 159 (626)
+|+.+++.+.|+...+ | ..+.|++||+|||-+-.
T Consensus 154 ~ll~~dg~v~G~~~~~~~g~~~~~~AkaVIlATGG~g~ 191 (510)
T PRK08071 154 DLIIEDGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred EEEEECCEEEEEEEECCCCCEEEEEECEEEECCCCCCE
T ss_conf 88734890899999928998899982779985688630
No 84
>KOG2820 consensus
Probab=98.65 E-value=7e-08 Score=75.51 Aligned_cols=154 Identities=21% Similarity=0.213 Sum_probs=90.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-----------HHC-----CCCC-------------CCCCCCC
Q ss_conf 8763578898894268999999985899899998076-----------260-----1246-------------6700221
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----------STI-----GSMS-------------CNPAIGG 52 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-----------~~~-----ael~-------------Cnps~gg 52 (626)
|.+.+||||||||-=||-||++||++|.+++|+|.-+ ++| +|.. -+|.+.|
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_conf 24651699986640000889999865770798733677765676567440212023368999999999999874846433
Q ss_pred C--CH--H---------HHHHHHHH---HHHHHHHHHHHHHHHHHH-------------HCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1--22--4---------89999986---303999999886314887-------------307878555346787849999
Q gi|254780808|r 53 L--GK--G---------HLVREIDA---LDGLMGRVADAAGIQFRV-------------LNVKKGPAVRGPRTQADRELY 103 (626)
Q Consensus 53 ~--ak--g---------~L~~Ei~a---Lgg~m~~~aD~~~i~~r~-------------ln~skGpAv~alraqvDR~~f 103 (626)
. .+ | +-+.++.+ ++++--++-+-..+--|- +|-+ +|++- | + .-
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~---gGvi~-a--~--ks 155 (399)
T KOG2820 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNES---GGVIN-A--A--KS 155 (399)
T ss_pred EEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC---CCEEE-H--H--HH
T ss_conf 364156203650767877789999987650035553027989975877765786412203455---65741-8--8--99
Q ss_pred HHHHHHHHHCCCCCEEEHHHHCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9999999970899689800101120--25881132220358633445433346643101344
Q gi|254780808|r 104 RLAMQREILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 104 s~~vt~~l~~~pni~i~~~eV~~l~--~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~ 163 (626)
-+..+..+..+-.|-+-..+|+.+. .+++..++|.|.+|+.+.++..|+|+|..++..+-
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHHCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEECCEEEEEECHHHHHHCC
T ss_conf 99999999870859962750456750467785258996668743312489983087886557
No 85
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.65 E-value=1.5e-07 Score=73.17 Aligned_cols=159 Identities=23% Similarity=0.299 Sum_probs=91.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC--C-CCC----CHHHHHHHH-----------
Q ss_conf 9876357889889426899999998589989999807626012466700--2-211----224899999-----------
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--I-GGL----GKGHLVREI----------- 62 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps--~-gg~----akg~L~~Ei----------- 62 (626)
|.+.+|||+|||||-.||=.|+.+|++|++|+|+|.+ |--.--|.-|| | ||. ....+++|-
T Consensus 1 ~~~~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~-D~a~GTSs~ss~LiHgG~RY~~~d~~~are~l~e~~~l~~~A 79 (545)
T PRK11101 1 RDSQETDVIIIGGGATGAGIARDCALRGLRCILVERH-DIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIA 79 (545)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9986176899998689999999998679939999899-761620012012712252312337099999999899999859
Q ss_pred ----HHHHHHH--------------HHHHHHHHHHHHHH----------CCCCC--CCCCCHHHHHHHHHHHH-HHHHHH
Q ss_conf ----8630399--------------99998863148873----------07878--55534678784999999-999999
Q gi|254780808|r 63 ----DALDGLM--------------GRVADAAGIQFRVL----------NVKKG--PAVRGPRTQADRELYRL-AMQREI 111 (626)
Q Consensus 63 ----~aLgg~m--------------~~~aD~~~i~~r~l----------n~skG--pAv~alraqvDR~~fs~-~vt~~l 111 (626)
.-+||+. ...+..+++..+.+ |-++. -|++.+-+|+|=..+.. .+..+.
T Consensus 80 phlv~~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~e~~~~eP~l~~~l~ga~~~~Dg~vdp~rL~ia~a~~A~ 159 (545)
T PRK11101 80 RHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK 159 (545)
T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCHHCEEEEEECCEEECHHHHHHHHHHHHH
T ss_conf 16403068638971502267899999999976998477689999975868883020799955227873899999999999
Q ss_pred HCCCCCEEEHHHHCCCCCCCCCEEEEEEC-----CCCCCCCCCCCCCCCCCCHHH
Q ss_conf 70899689800101120258811322203-----586334454333466431013
Q gi|254780808|r 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFLRGV 161 (626)
Q Consensus 112 ~~~pni~i~~~eV~~l~~~~~~~~~v~~~-----~g~~~~~~~viiatGtfl~g~ 161 (626)
++=- --+..-+|++|..+++.+.||... ....+.++.||=|+|++....
T Consensus 160 ~~GA-~i~~~t~V~~i~~~~g~v~gv~~~d~~tg~~~~i~ak~VINAAG~wad~I 213 (545)
T PRK11101 160 EHGA-RILTAHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI 213 (545)
T ss_pred HCCC-CEECCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHH
T ss_conf 7482-02026477899941887999999986789689998569997667546778
No 86
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.64 E-value=3.7e-07 Score=70.42 Aligned_cols=149 Identities=17% Similarity=0.285 Sum_probs=83.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHH---HHHHH-HHHH
Q ss_conf 8763578898894268999999985899899998076--2601246670022112248999998630---39999-9988
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALD---GLMGR-VADA 75 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLg---g~m~~-~aD~ 75 (626)
|+++|||+|||||.+|.=+|..||+.|++|.++|-+. ..++...=+-++ ++..+ -++-++.+| ++..+ +...
T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~d~R~~-al~~~-s~~~L~~lG~~~~i~~~~~~p~ 78 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELPDVRVS-ALSRA-SEHILRNVGAWQGIEARRAAPY 78 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE-EECHH-HHHHHHHCCCHHHHHHHCCCCE
T ss_conf 999876899991589999999998589978999379986344678986588-87899-9999998798555676237851
Q ss_pred HHH-----------HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC
Q ss_conf 631-----------4887307878555346787849999999999997089968980-0101120258811322203586
Q gi|254780808|r 76 AGI-----------QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS 143 (626)
Q Consensus 76 ~~i-----------~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~ 143 (626)
..+ +|.....+. |. +..-+.........-+.+...+|+++.. .+++++..++.. +.+.+.+|.
T Consensus 79 ~~~~v~~~~~~~~i~~~~~~~~~-~~---lg~iv~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~v~~~~g~ 153 (405)
T PRK08850 79 TAMEVWEQDSFARIEFDAESMAQ-PD---LGHIVENRVIQLALLEQIQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQ 153 (405)
T ss_pred EEEEEEECCCCCEECCCHHHCCC-CC---CCHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCC-EEEEECCCC
T ss_conf 25899847987431247444178-54---21246449999999999973899199737535567617971-599977998
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 33445433346643
Q gi|254780808|r 144 MIRCSTVVLTTGTF 157 (626)
Q Consensus 144 ~~~~~~viiatGtf 157 (626)
.+.++-+|.|-|.-
T Consensus 154 ~i~a~llVgaDG~~ 167 (405)
T PRK08850 154 ALTAKLVVGADGAN 167 (405)
T ss_pred EEEEEEEEEECCCC
T ss_conf 88750899916987
No 87
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.64 E-value=4.1e-08 Score=77.13 Aligned_cols=110 Identities=24% Similarity=0.372 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-----CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHC
Q ss_conf 64222553212335676433452013015787-----7645434776668988999999875434001001100012110
Q gi|254780808|r 270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN-----TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD 344 (626)
Q Consensus 270 ~gprycPsie~k~~~~~~~p~h~VqLrpE~~~-----~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd 344 (626)
.|-+|=...+-.+...|++. +-.|-||.. .-.+-||=++|.|-..+-.+-+..|.||+.-+ .|
T Consensus 428 ~GV~fIRGrvaeI~e~p~~~---liV~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~---~g------ 495 (622)
T COG1148 428 YGVRFIRGRVAEIAEFPKKK---LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDE---DG------ 495 (622)
T ss_pred HCCEEECCCEEEEEECCCCC---EEEEEEECCCCCEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCC---CC------
T ss_conf 08536646410168879983---6999860346731112333799950444576568888754865178---77------
Q ss_pred CC---CHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23---545656776540334156621330433466666677899999874203
Q gi|254780808|r 345 YI---NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394 (626)
Q Consensus 345 ~~---~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~ 394 (626)
|+ .|+ |.| .++ ..+|+|.||-..|----..|-|||-.|+.-|+..+.
T Consensus 496 F~k~~hPk-l~p-v~s-~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 496 FLKEAHPK-LRP-VDS-NRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred CCCCCCCC-CCC-CCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 60347877-664-555-678579810036984277888776788998999863
No 88
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.64 E-value=6.6e-07 Score=68.62 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=33.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 7635788988942689999999858998999980762
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
.+++||+|||+|+||.=||+.+|..|++|+|+|..+.
T Consensus 9 D~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~ 45 (584)
T PRK12835 9 DRTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 7753879989678999999999988995899969999
No 89
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=98.63 E-value=3.2e-07 Score=70.80 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--------CCCCCCHHHHH--------HHHHHHH---
Q ss_conf 5788988942689999999858998999980762601246670--------02211224899--------9998630---
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--------AIGGLGKGHLV--------REIDALD--- 66 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--------s~gg~akg~L~--------~Ei~aLg--- 66 (626)
=||+|||||.|||=+||+||++|++|.+++-...--..-|=|| +.....-+.+. +-.+.|.
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~~~~ 336 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEALGV 336 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 71899893899999999999789968999479875655666731267402578997689999999999999999875468
Q ss_pred -------HHHHHHHH--HHHHHHHHHCCCCCC-----------------------CCCCHH-HHHHHHHHHHHHHHHHH-
Q ss_conf -------39999998--863148873078785-----------------------553467-87849999999999997-
Q gi|254780808|r 67 -------GLMGRVAD--AAGIQFRVLNVKKGP-----------------------AVRGPR-TQADRELYRLAMQREIL- 112 (626)
Q Consensus 67 -------g~m~~~aD--~~~i~~r~ln~skGp-----------------------Av~alr-aqvDR~~fs~~vt~~l~- 112 (626)
|.+-.+.| +..-+-+++.. -+| +.+-+. ..++-.. .++..+.
T Consensus 337 ~~~~~~~Gvl~la~~e~~~~r~~~~~~~-~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~v~P~~---l~~aLl~~ 412 (660)
T PRK01747 337 AFDHDWCGVLQLAWDEKSAEKIAKMLEA-GLPAELARALSAEEAEALAGLPVPCGGIFYPQGGWLCPAE---LCRALLAA 412 (660)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHH-CCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCEECHHH---HHHHHHHH
T ss_conf 6441467569954986889999999974-6994330247999997752998777837825897756899---99999986
Q ss_pred CCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 08996898-00101120258811322203586334454333466431
Q gi|254780808|r 113 SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 113 ~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
.|++|+++ +.+|++|...++... +.+..+..+.+..||+|+|.-.
T Consensus 413 a~~~i~~~~~~~V~~l~~~~~~w~-l~~~~~~~~~Ad~VVlA~G~~s 458 (660)
T PRK01747 413 AGQGLTIHFGHEVARLERVDDQWQ-LDFAGGVLASAPVVVLANGHDA 458 (660)
T ss_pred CCCCEEEEECCEEEEEEECCCEEE-EEECCCCEEECCEEEECCCCCH
T ss_conf 479859992744789997498089-9968992861467999056101
No 90
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.62 E-value=1.2e-07 Score=73.85 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=114.0
Q ss_pred CEEEECCCHHHHHHHHHHH--HCCCCEEEEECCHH-HCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 7889889426899999998--58998999980762-601246670022112248999998630-3999999886314887
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAA--KLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALD-GLMGRVADAAGIQFRV 82 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~A--r~G~~v~L~~~~~~-~~ael~Cnps~gg~akg~L~~Ei~aLg-g~m~~~aD~~~i~~r~ 82 (626)
||+|||||+|||==|.++| +.|.+|.+++-.|+ .. =||.-| -=..|++.+| -....+.+. ++
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~----~~~tyg-----~w~~dl~~~~hawl~~l~~~-----~W 66 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLP----GNNTYG-----VWDDDLSDLGHAWLADLVEH-----RW 66 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCCCC-----CCCCCHHHHHHHHHHHHHCC-----CC
T ss_conf 97887477578999999997505871898678887677----687442-----12222327899999988416-----38
Q ss_pred HCC--CCCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 307--8785-----553467878499999999999970899689800101120258811322203586334454333466
Q gi|254780808|r 83 LNV--KKGP-----AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155 (626)
Q Consensus 83 ln~--skGp-----Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatG 155 (626)
-|. -.+| =..+= ..+||..|.+.+......+..+..+++.|.++..+...-.-|.+..|..+.|+.||.|+|
T Consensus 67 ~~~~~y~~~~~~~~L~~~Y-~~~~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~~~g~~i~Ar~V~Da~G 145 (419)
T TIGR01790 67 SDAYEYRFPEEPIKLGRAY-GSVDRAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVECAGGQRIQARLVIDARG 145 (419)
T ss_pred CCEEEECCCCCCHHCCCCC-EEECHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEECCC
T ss_conf 9806883873430105665-000158999999986200376133013566665440551114428973784007883257
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 43101344432023322247511133100001011200
Q gi|254780808|r 156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT 193 (626)
Q Consensus 156 tfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~ 193 (626)
--- |.+. .........+...+.++--.+.+..+..
T Consensus 146 ~~~-G~l~--~~~~~~~~~g~Q~ayG~~~rl~~~P~~~ 180 (419)
T TIGR01790 146 FKP-GKLV--QYEKASLAVGYQAAYGVEVRLSEPPHGP 180 (419)
T ss_pred CCC-CCEE--CCCCCCCCCEEEEEEEEEEEEECCCCCC
T ss_conf 776-5101--1256676421213132778872478799
No 91
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.59 E-value=5.5e-07 Score=69.15 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=85.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHCCCCCCCCCC--CCCCH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76357889889426899999998589---9899998076260124667002--21122-489999986303999999886
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLG---ASTALITHKTSTIGSMSCNPAI--GGLGK-GHLVREIDALDGLMGRVADAA 76 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~~~~~~~ael~Cnps~--gg~ak-g~L~~Ei~aLgg~m~~~aD~~ 76 (626)
+++|||+|||||.+|+=+|++|++.| ++|.++|.+...... .|++ .+++= ---++-++.|| +.-...+.+
T Consensus 1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~---~~~~d~Ra~al~~~s~~~L~~lG-l~~~l~~~~ 76 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDA---HPGFDARAIALAAGTCQQLARLG-VWQALADCA 76 (395)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC---CCCCCCEEEEECHHHHHHHHHCC-CHHHHHHHC
T ss_conf 97189899993899999999999618899749999378854456---88877447888899999999879-928878627
Q ss_pred H----HH------H--HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC
Q ss_conf 3----14------8--87307878555346787849999999999997089968980-0101120258811322203586
Q gi|254780808|r 77 G----IQ------F--RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS 143 (626)
Q Consensus 77 ~----i~------~--r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~ 143 (626)
. ++ + -.++. +......+.-.+.+..+.+...+.+..+|+|++.. .+|+++..++..+. +.+.+|.
T Consensus 77 ~pi~~i~v~d~~~~~~~~~~~-~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~-v~l~~g~ 154 (395)
T PRK05732 77 TPIRHIHVSDRGHAGFVRLDA-EDYGVDALGYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVR-VTLDDGE 154 (395)
T ss_pred CCCEEEEEEECCCCCCEECCH-HHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEE-EEECCCC
T ss_conf 654289984068677210563-32387656543236999999999884089969976988999998289279-9987998
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3344543334664
Q gi|254780808|r 144 MIRCSTVVLTTGT 156 (626)
Q Consensus 144 ~~~~~~viiatGt 156 (626)
.+.++-+|.|-|.
T Consensus 155 ~i~a~lvVgADG~ 167 (395)
T PRK05732 155 TLTARLLVAADGT 167 (395)
T ss_pred EEEECEEEEECCC
T ss_conf 9983799992899
No 92
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.59 E-value=2.1e-07 Score=72.06 Aligned_cols=143 Identities=25% Similarity=0.365 Sum_probs=80.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076---2601246670022112248999998630399999988631
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
|.+.|||+|||||-||--||..+|+.|.+|+|+|.+. -++----|=||=--+...++..+++......+...+...+
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~~ 80 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 98515489989777799999999967997799930698676557467314499999999999986414236520577853
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 4887307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf 157 (626)
-| +.+.+- .+ +.........+.+....++++++++..=+. ++ .+.|.......+.++.+|||||.-
T Consensus 81 d~--------~~~~~~-k~-~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~-~v~V~~~~~~~~~a~~iiIATGS~ 146 (454)
T COG1249 81 DF--------EKLLAR-KD-KVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PH-TVEVTGEDKETITADNIIIATGSR 146 (454)
T ss_pred CH--------HHHHHH-HH-HHHHHHHHHHHHHHHHCCCEEEEEEEEECC--CC-EEEEECCCCEEEEECEEEEECCCC
T ss_conf 89--------999999-99-999987677999997489889998999888--99-899906875499827899906998
No 93
>PRK08013 hypothetical protein; Provisional
Probab=98.58 E-value=9.7e-07 Score=67.40 Aligned_cols=153 Identities=15% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHH-HHHHHHHHH---HHHHH-HHHHHHH
Q ss_conf 635788988942689999999858998999980762601246670022112248-999998630---39999-9988631
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDALD---GLMGR-VADAAGI 78 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~-L~~Ei~aLg---g~m~~-~aD~~~i 78 (626)
++|||+|||||.+|.=+|..+|+.|++|.++|.++..-....=.+.+...+-.. -++=++.|| .+... ++--..+
T Consensus 2 ~~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEE
T ss_conf 96788999935999999999971899589991899876778888770444008999999998798076686067761157
Q ss_pred HH------HHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 48------87307878555-346787849999999999997089968980-01011202588113222035863344543
Q gi|254780808|r 79 QF------RVLNVKKGPAV-RGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTV 150 (626)
Q Consensus 79 ~~------r~ln~skGpAv-~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~v 150 (626)
+. --+.....+.+ ..+..-++.....+...+.+..++|++++. .+|+++....+ .+.+.+.+|..+.++-+
T Consensus 82 ~v~~~~~~g~~~~~~~~~~~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~~~v~l~~g~~i~a~lv 160 (400)
T PRK08013 82 EVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN-EAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEECCCCCCEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCC-EEEEEECCCCEEEEEEE
T ss_conf 98637877524326201387523043020889999999998689829986866899871697-15999479989974289
Q ss_pred CCCCCCC
Q ss_conf 3346643
Q gi|254780808|r 151 VLTTGTF 157 (626)
Q Consensus 151 iiatGtf 157 (626)
|.|-|..
T Consensus 161 VgADG~~ 167 (400)
T PRK08013 161 IGADGAN 167 (400)
T ss_pred EECCCCC
T ss_conf 9978876
No 94
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.57 E-value=3.7e-07 Score=70.36 Aligned_cols=151 Identities=18% Similarity=0.234 Sum_probs=81.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
|-+.+|||+|||||.+|.=+|+.||+.|++|.++|.++..-.. .-+-+++-...+ ++-++.|| +.-.+.+.. ..+
T Consensus 13 ~~~~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~-~~~ra~~l~~~s--~~iL~~lG-l~~~i~~~~-~~~ 87 (413)
T PRK07364 13 LRSLDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAV-AKGQAYALSLLS--ARIFEGIG-VWEKILPHI-GPF 87 (413)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCEEEECHHH--HHHHHHCC-CHHHHHHHC-CCC
T ss_conf 9989899899992799999999998689988999179976667-887389958999--99999879-968988614-754
Q ss_pred HHHCC--CCCCCC----------CCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCC--CCC
Q ss_conf 87307--878555----------34678784999999999999708996898-0010112025881132220358--633
Q gi|254780808|r 81 RVLNV--KKGPAV----------RGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDN--SMI 145 (626)
Q Consensus 81 r~ln~--skGpAv----------~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g--~~~ 145 (626)
+-+.- ..++.. ..+.-.+.....-+...+.+.+.+|+++. ..+|+++..++..+.......+ ..+
T Consensus 88 ~~i~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i 167 (413)
T PRK07364 88 RQIQLSDADFPGVVRFSPEDLGTEALGYVGEHQVLLEALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTL 167 (413)
T ss_pred CEEEEEECCCCCEEEECHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEE
T ss_conf 25999818987467516554388754233002999999999998489948982877999997698369999829913899
Q ss_pred CCCCCCCCCCC
Q ss_conf 44543334664
Q gi|254780808|r 146 RCSTVVLTTGT 156 (626)
Q Consensus 146 ~~~~viiatGt 156 (626)
.++-+|-|-|.
T Consensus 168 ~a~llIgaDG~ 178 (413)
T PRK07364 168 QSKLVVAADGA 178 (413)
T ss_pred EEEEEEEECCC
T ss_conf 85689993188
No 95
>PRK08774 consensus
Probab=98.56 E-value=3.4e-07 Score=70.65 Aligned_cols=147 Identities=20% Similarity=0.340 Sum_probs=80.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899899998076260124667002---2112--2489999986303999999886
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG--KGHLVREIDALDGLMGRVADAA 76 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a--kg~L~~Ei~aLgg~m~~~aD~~ 76 (626)
|.+.|||+|||||.+|.-+|..+++.|++|.|+|.+|..- .|+. ..++ .+ -++-+++|| +.....+..
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~~~~-----~~~~~d~R~~al~~~-s~~~L~~lG-v~~~l~~~~ 73 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATPAGA-----PPAVFDQRNLSFAAA-TVNALGALG-VMAKLRSAP 73 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----CCCCCCCCEEEECHH-HHHHHHHCC-CHHHHHHHC
T ss_conf 9899878999916999999999966899789993799888-----866787316773799-999999889-868766405
Q ss_pred H-HHHHHHCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCC--CEEEEEECC
Q ss_conf 3-14887307878-----------5553467878499999999999970899689800-1011202588--113222035
Q gi|254780808|r 77 G-IQFRVLNVKKG-----------PAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKN--IISSIVMQD 141 (626)
Q Consensus 77 ~-i~~r~ln~skG-----------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~--~~~~v~~~~ 141 (626)
. |+ ++--...| ....++..-+--..+.+.+.+.+...++++.++. ++.++..... ..+.+.+.+
T Consensus 74 ~pi~-~i~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 152 (402)
T PRK08774 74 GPIR-RIHVSRAGDFGRVQLDAADYGRDAFGQVVVARDFGEALQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATAD 152 (402)
T ss_pred CCEE-EEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECC
T ss_conf 6517-999850787755653677608876432001699999999999857894898222899999953686169999379
Q ss_pred CC-CCCCCCCCCCCCC
Q ss_conf 86-3344543334664
Q gi|254780808|r 142 NS-MIRCSTVVLTTGT 156 (626)
Q Consensus 142 g~-~~~~~~viiatGt 156 (626)
|. .+.++-+|.|-|.
T Consensus 153 g~~~i~a~llVgADG~ 168 (402)
T PRK08774 153 GEQLVRARLVVGADGS 168 (402)
T ss_pred CCEEEEECEEEECCCC
T ss_conf 9579830599995899
No 96
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.55 E-value=9.3e-08 Score=74.64 Aligned_cols=150 Identities=23% Similarity=0.323 Sum_probs=75.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCC-------CCH--HHHHHH-HHHHHH----
Q ss_conf 635788988942689999999858998999980762601246670--0221-------122--489999-986303----
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGG-------LGK--GHLVRE-IDALDG---- 67 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg-------~ak--g~L~~E-i~aLgg---- 67 (626)
...||+|||+|.||+=||+++++.|++|.|++-.+-. .+|- +-|| ..- -..+.+ +.+=+|
T Consensus 14 ~~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~----~g~s~~a~gGi~a~~~~~~Ds~e~~~~dt~~~g~gl~d~ 89 (533)
T PRK07804 14 DAADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALT----ATATRYAQGGIAVVLPDPGDSVDAHVADTLAAGAGLCDP 89 (533)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC----CCCHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 2268899996499999999998679988999788999----970799868778845799999999999999853787899
Q ss_pred -HHHHHHHHHHHHHHHHCC-----CCCCC---------CC-CHHH-HHHHHHHHHHHHHHHHC-CCCCEEE-HHHHCCCC
Q ss_conf -999999886314887307-----87855---------53-4678-78499999999999970-8996898-00101120
Q gi|254780808|r 68 -LMGRVADAAGIQFRVLNV-----KKGPA---------VR-GPRT-QADRELYRLAMQREILS-QENLDVI-QGEVAGFN 128 (626)
Q Consensus 68 -~m~~~aD~~~i~~r~ln~-----skGpA---------v~-alra-qvDR~~fs~~vt~~l~~-~pni~i~-~~eV~~l~ 128 (626)
++-..++.+.--.+.|-. ++-+- ++ ..|. -+..+..-..+...|.. -.+|+|+ +-.+++|+
T Consensus 90 ~~v~~l~~~a~~~v~~L~~~G~~f~~~~~G~~~~~~~gGh~~~R~~~~~~d~~G~~i~~~l~~~~~~v~i~~~~~~~~ll 169 (533)
T PRK07804 90 DAVRSIVADGPRAVRELVALGARFDESPPGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAARMLDIRENHVALDLL 169 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 99999999999999999983983654899847777327876653561388861899999999985076079506999998
Q ss_pred CCCCCEEEEEECCC---CCCCCCCCCCCCCCC
Q ss_conf 25881132220358---633445433346643
Q gi|254780808|r 129 TEKNIISSIVMQDN---SMIRCSTVVLTTGTF 157 (626)
Q Consensus 129 ~~~~~~~~v~~~~g---~~~~~~~viiatGtf 157 (626)
.+++.+.++..... ..+.+++||+|||-+
T Consensus 170 ~d~~~v~gv~~~~~~~~~~i~AkaVILATGG~ 201 (533)
T PRK07804 170 HDGRAVTGVLVGSPDGVGAVHAPAVVLATGGL 201 (533)
T ss_pred ECCCEEEEEEEEECCCEEEEECCEEEECCCCC
T ss_conf 06998999999848967999919799868997
No 97
>PRK11445 putative oxidoreductase; Provisional
Probab=98.54 E-value=5.3e-07 Score=69.27 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=86.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 357889889426899999998589989999807626012----4667002211224899999863039999--9988631
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS----MSCNPAIGGLGKGHLVREIDALDGLMGR--VADAAGI 78 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae----l~Cnps~gg~akg~L~~Ei~aLgg~m~~--~aD~~~i 78 (626)
.|||+|||||-|||=||..+|+. .+|+|++-+-. +++ -+|-=.| .. ...+++..++-.+.. ..+..-.
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~-~~~~pr~KpCGG~I---~~-~a~~~l~~~~~~ip~~~l~~~~i~ 74 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ-CGTEGFSKPCGGLL---AP-DAQKSFAKDGLTLPKDVIANPQIF 74 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCC-CCCCCCCCCCCCCC---CH-HHHHHHHHCCCCCCHHHCCCCEEE
T ss_conf 99799989788999999998268-98899981356-56799988786871---97-289998750678856650155378
Q ss_pred HHHHHCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC--CCCCCCCCC
Q ss_conf 4887307878555----3467878499999999999970899689800101120258811322203586--334454333
Q gi|254780808|r 79 QFRVLNVKKGPAV----RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVL 152 (626)
Q Consensus 79 ~~r~ln~skGpAv----~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~--~~~~~~vii 152 (626)
..++.+.+ .+-. ..- ..+||+.|-..+.+...++ .-..+.+.+.++..+++.+..+.+.+|. .+.++.+|-
T Consensus 75 ~~~~~~~~-~~~~~~~~~~y-i~~~R~~fD~~L~~~a~~~-~~~~~~~~~~~i~~~~~g~~v~~~~~g~~~~~~a~~iIG 151 (348)
T PRK11445 75 AVKTIDLA-NSLTRNYQRSY-INIDRHKFDLWLKSLIPAS-VEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVG 151 (348)
T ss_pred EEEECCCC-CCCCCCCCCEE-EECCHHHHHHHHHHHHHHC-CCEEEEEEEEEEEECCCEEEEEEEECCEEEEEEECEEEE
T ss_conf 76642787-75221356607-6055999999999988728-738971489999983980799997189078987378998
Q ss_pred CCCCC
Q ss_conf 46643
Q gi|254780808|r 153 TTGTF 157 (626)
Q Consensus 153 atGtf 157 (626)
|.|.-
T Consensus 152 ADGan 156 (348)
T PRK11445 152 ADGAN 156 (348)
T ss_pred CCCCC
T ss_conf 98977
No 98
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.52 E-value=7.2e-07 Score=68.32 Aligned_cols=129 Identities=20% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 3578898894268999999985899899998076--26012466700221122489-----9999863039999998863
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHL-----VREIDALDGLMGRVADAAG 77 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L-----~~Ei~aLgg~m~~~aD~~~ 77 (626)
+|||+|||||-||.=|| ++..|.+|+|+|-.. -++----|-|| |.++ .++++.. ..-+
T Consensus 1 ~YDviVIG~Gpgg~~~a--~~~aG~kValVE~~~~GGtCln~GCiPs-----K~ll~~a~~~~~~~~~--------~~~g 65 (453)
T PRK07846 1 HYDLIIIGTGSGNSILD--ERFADKRIAIVEKGTFGGTCLNVGCIPT-----KMFVYAADVAQTIREA--------SRLG 65 (453)
T ss_pred CCCEEEECCCHHHHHHH--HHHCCCEEEEEECCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHH--------HHCC
T ss_conf 97789989888999999--9982992999978997781716166889-----9999999999999765--------6268
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 14887307878555346787849-----9999999999970899689800101120258811322203586334454333
Q gi|254780808|r 78 IQFRVLNVKKGPAVRGPRTQADR-----ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL 152 (626)
Q Consensus 78 i~~r~ln~skGpAv~alraqvDR-----~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~vii 152 (626)
+.... +.+.-... .+| +..+..-.+.+.+.+++++++++..=. +++.+....+.++..+.++.+||
T Consensus 66 i~~~~------~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~--~~~~v~v~~~~~~~~i~a~~iiI 136 (453)
T PRK07846 66 VDAHI------DRVRWPDI-VSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFV--DADGLYTLRTGDGEEITADQIVI 136 (453)
T ss_pred EECCC------CCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC--CCCEEEECCCCCCEEEEECEEEE
T ss_conf 20677------84199999-99999999999875699971589918998489991--59867861379846998164999
Q ss_pred CCCCC
Q ss_conf 46643
Q gi|254780808|r 153 TTGTF 157 (626)
Q Consensus 153 atGtf 157 (626)
|||.-
T Consensus 137 ATGS~ 141 (453)
T PRK07846 137 AAGSR 141 (453)
T ss_pred ECCCC
T ss_conf 02887
No 99
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.49 E-value=3.4e-07 Score=70.62 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=68.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 6357889889426899999998589989999807626012----46670022112248999-998630399999988631
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS----MSCNPAIGGLGKGHLVR-EIDALDGLMGRVADAAGI 78 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae----l~Cnps~gg~akg~L~~-Ei~aLgg~m~~~aD~~~i 78 (626)
|+|||+|||||-||.-||..+ .|.+|+|+|-.+ +|= --|=|| |-++.. ++- ..+... .+-++
T Consensus 1 k~YDviVIGaGpgG~~~a~~~--ag~kValvEk~~--~GGtCln~GCIPs-----K~ll~~a~~~---~~~~~~-~~~Gi 67 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT--FGGTCLNVGCIPT-----KMFVYAAEVA---QSIGES-ARLGI 67 (452)
T ss_pred CCCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC--CCCCCCCCCHHHH-----HHHHHHHHHH---HHHHHH-HHCCE
T ss_conf 947689999868999999998--299099997899--2785802358889-----9999999999---999777-73583
Q ss_pred HHHHHCCCCCCCCC--CH--H---HHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48873078785553--46--7---87849999999999997089968980010112025881132220358633445433
Q gi|254780808|r 79 QFRVLNVKKGPAVR--GP--R---TQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV 151 (626)
Q Consensus 79 ~~r~ln~skGpAv~--al--r---aqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~vi 151 (626)
.. ..+.+. .+ | ..+|.......-.....++++|++++++..=+ +++. +.+.+|..+.++.+|
T Consensus 68 ~~------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~--~~~t---v~v~~g~~~~a~~ii 136 (452)
T TIGR03452 68 DA------EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRT---LRTGDGEEITGDQIV 136 (452)
T ss_pred EC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC--CCCE---EECCCCCEEEECEEE
T ss_conf 25------667307999999998767899975599998536778869999899993--7857---981898789846699
Q ss_pred CCCCC
Q ss_conf 34664
Q gi|254780808|r 152 LTTGT 156 (626)
Q Consensus 152 iatGt 156 (626)
||||.
T Consensus 137 IATGs 141 (452)
T TIGR03452 137 IAAGS 141 (452)
T ss_pred ECCCC
T ss_conf 93799
No 100
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.48 E-value=2.2e-06 Score=64.81 Aligned_cols=35 Identities=31% Similarity=0.601 Sum_probs=32.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+++|||+|||+| ||.=||+.+++.|.+|+|+|..+
T Consensus 14 D~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~ 48 (566)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS 48 (566)
T ss_pred CCEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 555497998846-99999999998899389996899
No 101
>PRK11749 putative oxidoreductase; Provisional
Probab=98.47 E-value=3.1e-06 Score=63.78 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 677654033415662133-0433466666677899999874203345
Q gi|254780808|r 352 FPTLETKKISGLFLAGQI-NGTTGYEEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 352 ~~tLe~k~~~~LffAGQI-~GteGYeEAAAqGl~AGiNa~~~~~~~~ 397 (626)
+.+++| .+||+|.||-+ +|.+.=++|.+.|-.|.....++++|..
T Consensus 413 d~~~~T-s~~gVFAaGD~~~G~~~vv~Ai~~Gr~AA~~I~~~L~G~~ 458 (460)
T PRK11749 413 DETGRT-SLPGVFAGGDIVTGAATVVLAVGDGKDAAEAIHEYLEGAA 458 (460)
T ss_pred CCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899722-8999999458776705999999999999999999858988
No 102
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.45 E-value=6.1e-06 Score=61.73 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=41.9
Q ss_pred HHHHCC----CC--HHHHHHHHHH------HCCCEEEEEEEEEC---------CCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 121102----35--4565677654------03341566213304---------33466666677899999874203345
Q gi|254780808|r 340 AIEYDY----IN--PKELFPTLET------KKISGLFLAGQING---------TTGYEEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 340 ~ieyd~----~~--P~~L~~tLe~------k~~~~LffAGQI~G---------teGYeEAAAqGl~AGiNa~~~~~~~~ 397 (626)
+|||+- +| ..+|+..=+. |-++|||.||-+|| -.-..|-..=|-+||-|||..++.++
T Consensus 828 vVHhTMGGlkINtkAqVL~~dg~vnV~~~gKPI~GLYAAGEVTGGVHG~NRLGGNSLlECVVFGRIAGd~AA~i~~~~~ 906 (1167)
T PTZ00306 828 SIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred CCEECCCCEEECCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5612689836888854884478512356687427657864214765667666057787888614877698999875253
No 103
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.40 E-value=4e-06 Score=63.06 Aligned_cols=148 Identities=16% Similarity=0.279 Sum_probs=88.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 87635788988942689999999858998999980762601246670022112248999998630399999988631---
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI--- 78 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i--- 78 (626)
|.+..+|+|||||.||.=+|+.|+|.|++|.++|..++- .+....=++. ..-.+=++.||-. -.+... ++
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~-~~~G~gi~l~----pn~~~~L~~lGl~-~~~~~~-~~~~~ 73 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI-GEIGAGIQLG----PNAFSALDALGVG-EAARQR-AVFTD 73 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCEEEEC----HHHHHHHHHCCCH-HHHHHH-CCCCC
T ss_conf 989984999897889999999999789999999179988-8787188989----8999999987990-899831-66766
Q ss_pred HHHHHCCCCC------CCCCC-------HHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 4887307878------55534-------678784999999999999708996898-001011202588113222035863
Q gi|254780808|r 79 QFRVLNVKKG------PAVRG-------PRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSM 144 (626)
Q Consensus 79 ~~r~ln~skG------pAv~a-------lraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~ 144 (626)
.+++.+...| |.... +-..+.|.......-+.+.+.|++++. ..+|+++..++.. +.|.+.+|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~R~~L~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~-v~v~~~dG~~ 152 (396)
T PRK08163 74 HLTMMDAVDAEEVVRIPTGQAFRDRFGNPYAVIHRADIHLSLLEAVQDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNR 152 (396)
T ss_pred CEEEEECCCCCEEEEECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCE-EEEEECCCCE
T ss_conf 259997688858885047604566249972687799999999999985698178709999999953997-9999889989
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3445433346643
Q gi|254780808|r 145 IRCSTVVLTTGTF 157 (626)
Q Consensus 145 ~~~~~viiatGtf 157 (626)
..+..||-|-|-.
T Consensus 153 ~~adlvVGADG~~ 165 (396)
T PRK08163 153 WTGDALIGCDGVK 165 (396)
T ss_pred EEEEEEEECCCCC
T ss_conf 9876999648877
No 104
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.37 E-value=6.9e-06 Score=61.34 Aligned_cols=362 Identities=21% Similarity=0.249 Sum_probs=207.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-HHH----------CC-CCCCCC-CCCC-------CCHH----HHHH
Q ss_conf 357889889426899999998589989999807-626----------01-246670-0221-------1224----8999
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TST----------IG-SMSCNP-AIGG-------LGKG----HLVR 60 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~~~----------~a-el~Cnp-s~gg-------~akg----~L~~ 60 (626)
++||.|||.|.||--||+++++.|-.|.+++.+ .-+ || -+.=+- ||-. -|+| +.|.
T Consensus 2 ~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~DdSi~~Hv~DTL~AGaG~cD~~aV~ 81 (546)
T TIGR00551 2 EADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAETDDSIDAHVEDTLAAGAGLCDEEAVE 81 (546)
T ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 63599975208999999853326863789758755556752000112663038755856877899998446788688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH
Q ss_conf 9986303999999886314887----------307878---------555346787849999999999997089968980
Q gi|254780808|r 61 EIDALDGLMGRVADAAGIQFRV----------LNVKKG---------PAVRGPRTQADRELYRLAMQREILSQENLDVIQ 121 (626)
Q Consensus 61 Ei~aLgg~m~~~aD~~~i~~r~----------ln~skG---------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~ 121 (626)
.+=.=|..|...==..++.|-- --+..| .||-+++..|- ....+.+.++|||+|++
T Consensus 82 ~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS~~RI~HA~GDaTGr~~~-----~~L~~~a~~~p~~~~~~ 156 (546)
T TIGR00551 82 FVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHSYRRILHAAGDATGREVI-----STLLKKARSEPNVEIIE 156 (546)
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH-----HHHHHHHHCCCCEEECC
T ss_conf 9985368999999866922026779887443100133566777427735763248999-----99999974377624101
Q ss_pred H-HHCCCCCC-------CCCEEEEEECCC-----CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0-10112025-------881132220358-----6334454333466431013444320233222475111331000010
Q gi|254780808|r 122 G-EVAGFNTE-------KNIISSIVMQDN-----SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK 188 (626)
Q Consensus 122 ~-eV~~l~~~-------~~~~~~v~~~~g-----~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~ 188 (626)
+ -+.+|..+ ++.+.||-+... ..+.+++||||||-+-+
T Consensus 157 ~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~----------------------------- 207 (546)
T TIGR00551 157 GEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGK----------------------------- 207 (546)
T ss_pred CCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCH-----------------------------
T ss_conf 214444442250247988879999997167872377630100032077321-----------------------------
Q ss_pred HHHHCCCCCCCCCCHHHHCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC--CC-CCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 11200544445441011000013443-211478766877743565780000--00-001232001477764024575414
Q gi|254780808|r 189 FDFDTGRLKTGTPARLDGKTIIWDKT-EKQFADERLIPFSFMTDKITNRQI--EC-GITRTNLETHRIIMENIKHSAIYS 264 (626)
Q Consensus 189 ~~~~~~r~ktgtppri~~~sidf~~~-e~q~~d~~~~~~s~~~~~~~~~q~--~~-~~~~t~~~~~~~~~~~~~~~~~~~ 264 (626)
-+..|.+|...-+|-|-.--. -.+-.|= +++-|-..-+..++. +- -++|-. |-+.-.
T Consensus 208 -----ly~~TTNp~~stGDGIala~raG~~v~DL--EF~QFHPT~L~~~~~GG~~~LitEAv-------RGEGA~----- 268 (546)
T TIGR00551 208 -----LYSFTTNPKVSTGDGIALAWRAGVEVRDL--EFVQFHPTALVKPRVGGRYFLITEAV-------RGEGAI----- 268 (546)
T ss_pred -----HHHHHCCCCCCCCHHHHHHHHCCCCEECC--CCCCCCCCCCCCCCCCCCCCCCCCEE-------ECCCCE-----
T ss_conf -----00312388742314689998728722046--34256721113788789876400110-------038742-----
Q ss_pred CCCCCCCCCCCC--------------C--CCCCCCCCCC-CCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 432356422255--------------3--2123356764-3345201301578776454347766689889999998754
Q gi|254780808|r 265 GDIKSYGPRYCP--------------S--IEDKIVRFGE-RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP 327 (626)
Q Consensus 265 g~~~~~gprycP--------------s--ie~k~~~~~~-~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IP 327 (626)
-..+.|.|+-+ + |-.+..+..+ ...+.|||--=+.+.+ =|+++.|.=..
T Consensus 269 -Lvd~~G~Rf~~~~hp~GeLAPRDiVaRAI~~~m~~~~~dPtqacVfLD~s~Ie~~-----~f~~RFP~I~~-------- 334 (546)
T TIGR00551 269 -LVDRDGKRFMADVHPRGELAPRDIVARAIDEEMKKGGKDPTQACVFLDASGIEDD-----FFKSRFPTITA-------- 334 (546)
T ss_pred -EECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH-----HHHCCCCHHHH--------
T ss_conf -3558886702677888876740488999999997228793406888743588834-----65212727899--------
Q ss_pred HHHHCCEEEECCHHHHCCCC--HH--------HHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHH---------------
Q ss_conf 34001001100012110235--45--------656776540334156621330433466666677---------------
Q gi|254780808|r 328 GLEKVNIIRPGYAIEYDYIN--PK--------ELFPTLETKKISGLFLAGQINGTTGYEEAAAQG--------------- 382 (626)
Q Consensus 328 GLEnAef~R~Gy~ieyd~~~--P~--------~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqG--------------- 382 (626)
.....|.-++.+-++ |- ..|..-||. ++|||-+| |+|.+|
T Consensus 335 -----~c~~~GID~~~~~IPv~P~AHY~~GGi~vD~~g~T~-~~GLYAiG---------E~A~tGlHGANRLASNSLLEc 399 (546)
T TIGR00551 335 -----KCRGAGIDIVREPIPVVPAAHYTMGGISVDAYGRTT-VPGLYAIG---------EVACTGLHGANRLASNSLLEC 399 (546)
T ss_pred -----HHHHCCCCCCCCCCCCCCCCCEEECCEEECCCCEEC-CCCEEEEH---------HHHCCCCCHHHHHHHHHHHHH
T ss_conf -----998578875558715446671573678875763321-34301200---------243066511467777878899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 899999874203345654653210799999988607877-4024420001221211578713668887
Q gi|254780808|r 383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL-EPYRMFTSRAEYRISLRPDNADNRLTPI 449 (626)
Q Consensus 383 l~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~~-EPYRMfTSRAEyRL~LR~DNAd~RLt~~ 449 (626)
||-|..|++.+..++| .=.|+..|---..|.-...-.+ |=--+=-.+.|.|.+||+.-.-.|++..
T Consensus 400 lV~G~~aa~~i~~~~~-~~Grs~~~~~~~~~e~~~~~~~~d~~~Lq~~~~~~~~~~w~~aGi~R~~~~ 466 (546)
T TIGR00551 400 LVFGLRAARAISRKPP-AAGRSDESSSALWDEPRSETPDIDRAELQHKMSELRSLLWEAAGIVRLSES 466 (546)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 8732899999865355-336651002666554134237751456645766889999974014455789
No 105
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.36 E-value=8.7e-06 Score=60.63 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=82.2
Q ss_pred CCCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC--H-H-HHHHHHHHHHHHHH-HH--
Q ss_conf 9876-35788988942689999999858998999980762601246670022112--2-4-89999986303999-99--
Q gi|254780808|r 1 MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--K-G-HLVREIDALDGLMG-RV-- 72 (626)
Q Consensus 1 m~~~-~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a--k-g-~L~~Ei~aLgg~m~-~~-- 72 (626)
|.++ +|||+|||||.+|+=+|+.|++.|++|.|+|.+..--..- =.|.+.+.+ . + .+.+++.....+-. ++
T Consensus 1 m~~~~~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~-~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~p 79 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQA-DQPDLRVYAFAADNAALLDRLGVWPAVRAARVQP 79 (392)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 999999988999906999999999986699789991789875556-8887369999889999999879816677516773
Q ss_pred ------HHHH---HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCC
Q ss_conf ------9886---314887307878555346787849999999999997089968980-010112025881132220358
Q gi|254780808|r 73 ------ADAA---GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDN 142 (626)
Q Consensus 73 ------aD~~---~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g 142 (626)
-|.. .++|..-...+.+-++ -+.+........+.+. .+++++.. .+|+++..+...+ .+.+.+|
T Consensus 80 ~~~~~v~d~~~~~~~~~~~~~~~~~~lg~----iv~~~~l~~~L~~~~~-~~~v~~~~~~~v~~~~~~~~~v-~v~~~dg 153 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGW----IVENDLLVDRLWAAVH-AAGIQLHCPARVVELEQDADGV-RLRLDDG 153 (392)
T ss_pred EEEEEEEECCCCCEEEECHHHCCCCCCCC----EEEHHHHHHHHHHHHH-CCCCEEECCCEEEEEEECCCEE-EEEECCC
T ss_conf 13589984589834753656628545653----2254999999999986-0899897486899999669858-9997799
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 633445433346643
Q gi|254780808|r 143 SMIRCSTVVLTTGTF 157 (626)
Q Consensus 143 ~~~~~~~viiatGtf 157 (626)
..+.++-+|.|-|..
T Consensus 154 ~~i~a~lvVgaDG~~ 168 (392)
T PRK08773 154 SRLEAALAIAADGAA 168 (392)
T ss_pred CEEEEEEEEECCCCC
T ss_conf 799988999837887
No 106
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.36 E-value=3.1e-06 Score=63.79 Aligned_cols=157 Identities=21% Similarity=0.256 Sum_probs=83.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-------CCCCCC---CCC-----C----------------
Q ss_conf 876357889889426899999998589989999807626-------012466---700-----2----------------
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-------IGSMSC---NPA-----I---------------- 50 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-------~ael~C---nps-----~---------------- 50 (626)
|+.++||+|||||.+|+=+||.|++.|.+|.++|-..-. -+.+.+ ++. .
T Consensus 1 ~~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 80 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEE 80 (387)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99764399989869999999999976991999917988767667767777524235553033433799999999998875
Q ss_pred ----------CCC-----C-------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC--CCCCCCC-HHHHHHHHHH
Q ss_conf ----------211-----2-------248999998630399--99998863148873078--7855534-6787849999
Q gi|254780808|r 51 ----------GGL-----G-------KGHLVREIDALDGLM--GRVADAAGIQFRVLNVK--KGPAVRG-PRTQADRELY 103 (626)
Q Consensus 51 ----------gg~-----a-------kg~L~~Ei~aLgg~m--~~~aD~~~i~~r~ln~s--kGpAv~a-lraqvDR~~f 103 (626)
|.+ . ..-...++++.+-.+ ....+...+ ...|+.. .| |.+. ..+++|=..|
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~~~~~~~-~~~~~~~~~~~p~~~ 158 (387)
T COG0665 81 LGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAEL-EPALGPDFVCG-GLFDPTGGHLDPRLL 158 (387)
T ss_pred CCCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-CCCCCCCCCEE-EEECCCCCEECHHHH
T ss_conf 3766445662429988446743256689999999860210011888787663-73337764334-598488834578999
Q ss_pred HHHHHHHHHCCC-CCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999999997089-96898001011202588113222035863344543334664310134
Q gi|254780808|r 104 RLAMQREILSQE-NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162 (626)
Q Consensus 104 s~~vt~~l~~~p-ni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~ 162 (626)
-+..-+.+.+.= -+.....+|.++..+. ...+|.|..|. +.+..||+|+|.......
T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~~-~~~~v~t~~g~-~~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEEECC-CEEEEEECCCE-EECCEEEECCCCCHHHHH
T ss_conf 99999999973991897235246776147-35899958970-981989999996435555
No 107
>PRK11728 hypothetical protein; Provisional
Probab=98.35 E-value=4.9e-06 Score=62.41 Aligned_cols=152 Identities=25% Similarity=0.360 Sum_probs=87.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCC--C-CCC--CHHHH-------------------
Q ss_conf 35788988942689999999858--9989999807626012466700--2-211--22489-------------------
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPA--I-GGL--GKGHL------------------- 58 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~ael~Cnps--~-gg~--akg~L------------------- 58 (626)
.|||+|||||-+||=.|+.||++ |.+|.|+|...+--.+-+=.|| + .|+ ..|.|
T Consensus 2 ~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~~ 81 (400)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 53099999679999999999955999839999689997563353242321564358999999999999999999999985
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC------CCCCHHH-HHHHHHHHHHHHHHHH
Q ss_conf ---------------99998630399999988631488730787----85------5534678-7849999999999997
Q gi|254780808|r 59 ---------------VREIDALDGLMGRVADAAGIQFRVLNVKK----GP------AVRGPRT-QADRELYRLAMQREIL 112 (626)
Q Consensus 59 ---------------~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk----Gp------Av~alra-qvDR~~fs~~vt~~l~ 112 (626)
-.|+..|..++-+ +...++..++|+... =| |.|++.+ .||=..+.+..-+.+.
T Consensus 82 ~i~~~~~GkliVA~~~~e~~~L~~l~~~-~~~ngv~~~~l~~~ei~~~eP~v~~~~al~~p~tgivD~~~l~~al~~~a~ 160 (400)
T PRK11728 82 GIPYEVCGKLLVATSELELERMEALYER-AAANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ 160 (400)
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHH-HHHCCCCEEEECHHHHHHHCCCCCCCCEEECCCCEEECHHHHHHHHHHHHH
T ss_conf 9992116869997799999999999999-985698628967999998688654323597687727789999999999999
Q ss_pred CCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 0899689800101120258811322203586334454333466431
Q gi|254780808|r 113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 113 ~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
++-.--....+|+++...++.+ .+.|..+..+.|+.||-|.|...
T Consensus 161 ~~G~~i~~~~~V~~i~~~~~~~-~v~t~~~~~i~a~~vINaAGl~A 205 (400)
T PRK11728 161 ARGGEIRLGAEVTALDEHANGV-VVRTSQGGEFEARTLVNCAGLMS 205 (400)
T ss_pred HCCCEEEECCEEEEEEEECCEE-EEEECCCCEEEEEEEEECCCHHH
T ss_conf 7898999278898999979999-99988998899718998666528
No 108
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.34 E-value=5.5e-06 Score=62.07 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=37.3
Q ss_pred HCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 03341566213-30433466666677899999874203345654
Q gi|254780808|r 358 KKISGLFLAGQ-INGTTGYEEAAAQGLVAGINSARKSNKLDCIC 400 (626)
Q Consensus 358 k~~~~LffAGQ-I~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~ 400 (626)
...||+|.||- .+|-.==++|.++|-.|+.+..++++|.+...
T Consensus 403 Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id~yL~G~~~~~ 446 (560)
T PRK12771 403 TGRPGVFAGGDMVPGERTVTTAVGHGKKAARHIDAFLRGEHPPK 446 (560)
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 79988674365466841899999999999999999966898766
No 109
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34 E-value=8.2e-07 Score=67.92 Aligned_cols=146 Identities=22% Similarity=0.231 Sum_probs=78.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-H---HHCCCCCC--CCCC--CCCCHHHHH----------------
Q ss_conf 6357889889426899999998589989999807-6---26012466--7002--211224899----------------
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-T---STIGSMSC--NPAI--GGLGKGHLV---------------- 59 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~---~~~ael~C--nps~--gg~akg~L~---------------- 59 (626)
-.+||+|||||-|||-||+.+++.|.+|++++.- + ..++.=.| ||++ |-.-.-..+
T Consensus 12 ~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ikRSGaiAaGmdalNaav~pG~~~PE~yv~~~tk~~DgIvdqd~v 91 (894)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRTV 91 (894)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 37787998897268899999760699589985456665205765345787513778798889999998723664038999
Q ss_pred -----------HHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCC---CCCEEE-H
Q ss_conf -----------999863039999998863--148873078785553467878-4999999999999708---996898-0
Q gi|254780808|r 60 -----------REIDALDGLMGRVADAAG--IQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQ---ENLDVI-Q 121 (626)
Q Consensus 60 -----------~Ei~aLgg~m~~~aD~~~--i~~r~ln~skGpAv~alraqv-DR~~fs~~vt~~l~~~---pni~i~-~ 121 (626)
.||+.+|=.+-+ |+.+ .+-|+ + +++.-... + +=+.-+..+-+.|..+ .+|.|. +
T Consensus 92 ~~~a~~~~~vv~eLE~~Gl~F~K--DenG~y~~Rrv----h-~~G~~~l~-mp~Ge~iK~iL~r~L~~~~~r~~V~v~Nr 163 (894)
T PRK13800 92 YQTATRGFAMVQRLERYGVKFEK--DEHGEYAVRRV----H-RSGSYVLP-MPEGKDVKKALYRVLRQRSMRERIRIENR 163 (894)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEE--CCCCCCHHEEC----C-CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99997768999999975984036--89878601020----4-57851123-64433557999999998632006089743
Q ss_pred HHHCCCCCCCCCEEEEE-----ECCCCCCCCCCCCCCCCCC
Q ss_conf 01011202588113222-----0358633445433346643
Q gi|254780808|r 122 GEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 122 ~eV~~l~~~~~~~~~v~-----~~~g~~~~~~~viiatGtf 157 (626)
-.+++|+.+++++.|+. +..-..+.+|+||+|||-.
T Consensus 164 v~~t~lLt~dGrv~Ga~gf~irtGe~~virAKAVIlATGga 204 (894)
T PRK13800 164 LMPVRVLTAGGRAVGAAALNTRTGEFVTVGAKAVILATGPC 204 (894)
T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEECCEEEEECCCC
T ss_conf 45789971388388888860356638999727799903655
No 110
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.33 E-value=5.1e-07 Score=69.40 Aligned_cols=146 Identities=21% Similarity=0.275 Sum_probs=91.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------------------HHC-CCCC--CC--------------
Q ss_conf 578898894268999999985899899998076---------------------260-1246--67--------------
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------------------STI-GSMS--CN-------------- 47 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------------------~~~-ael~--Cn-------------- 47 (626)
|||||||||--||-|||+|||+|.+|+|+|.-- |++ -.|+ |.
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~ 80 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKL 80 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 95799817613568999987538617887515677678887877100010267863578899999999999862147264
Q ss_pred --CC---CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------------CCCCCHHHHHHHHH
Q ss_conf --00---2211224-89999986303999999886314887307878-------------------55534678784999
Q gi|254780808|r 48 --PA---IGGLGKG-HLVREIDALDGLMGRVADAAGIQFRVLNVKKG-------------------PAVRGPRTQADREL 102 (626)
Q Consensus 48 --ps---~gg~akg-~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skG-------------------pAv~alraqvDR~~ 102 (626)
+. +=|+.-+ +-+.++ ..++.+.+|.+++|....= +.++-+-+ +.
T Consensus 81 h~qT~~l~~G~k~~s~~l~~~-------~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g~~~~~gGvl~~----~k 149 (401)
T TIGR01377 81 HRQTGLLLLGPKENSQSLKTI-------VATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVGLLDELGGVLYA----EK 149 (401)
T ss_pred ECCCCEEEECCCCCCHHHHHH-------HHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEEEEECCCCEECH----HH
T ss_conf 313451563157786058999-------9988625523033164123200476234068607887468874622----78
Q ss_pred HHHHHHHHHHCCCCCEEEHHHHCCCCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHH
Q ss_conf 9999999997089968980010112025---88113222035863344543334664310-1344
Q gi|254780808|r 103 YRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQDNSMIRCSTVVLTTGTFLR-GVIH 163 (626)
Q Consensus 103 fs~~vt~~l~~~pni~i~~~eV~~l~~~---~~~~~~v~~~~g~~~~~~~viiatGtfl~-g~~~ 163 (626)
=-++.++.+..|=.|-.-..-|.+|..+ .+.++.|+ .....+.++.+|||.|+-.+ -+++
T Consensus 150 a~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~k-t~~~sy~a~~lvvtaGaW~s~kLl~ 213 (401)
T TIGR01377 150 ALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVK-TTKDSYQAKKLVVTAGAWTSNKLLK 213 (401)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEE-EECCEEECCEEEEECCCCHHHHHCC
T ss_conf 999999999874968734860366542676789548999-7277032135789538861234313
No 111
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.32 E-value=1.9e-06 Score=65.32 Aligned_cols=132 Identities=24% Similarity=0.322 Sum_probs=80.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3578898894268999999985899899998076260124667002211--22489999986303999999886314887
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGHLVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~--akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
+-||+|||||-||--|||.||+.|+||+++|.++ |+||= +-|+|.-+|-.- ...-..-|+-+|.|+-
T Consensus 17 e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~l----------s~GGG~WgGGmlfn~ivv~-~~a~~iLde~gi~y~~ 85 (229)
T pfam01946 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSL----------SPGGGAWGGGMLFSAMVVR-KPADEFLDEFGIRYED 85 (229)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCC----------CCCCCCCCCCCCCCCEEEC-CHHHHHHHHCCCCCEE
T ss_conf 2688998878179999999987898599996452----------6888620201225633764-1389999974995276
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCC-----------CCCCCC
Q ss_conf 3078785553467878499999999999970899689800-1011202588113222035863-----------344543
Q gi|254780808|r 83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSM-----------IRCSTV 150 (626)
Q Consensus 83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~-----------~~~~~v 150 (626)
..-.+-. +|--.|.......... +|..+... .|+|+...++++.||.+..... +.|+.|
T Consensus 86 -------~~~g~~v-~ds~~~~s~L~s~a~~-aGakifn~~~VEDli~r~~rV~GvViNWt~V~~~g~hvDP~~i~ak~V 156 (229)
T pfam01946 86 -------EGDYVVV-ADAAEFTSTLASKALQ-PGVKIFNATSVEDLIIRDNRVAGVVTNWTLVEMAGLHMDPLTIRAKAV 156 (229)
T ss_pred -------CCCCEEE-ECHHHHHHHHHHHHHC-CCCEEEECCEEEEEEEECCCEEEEEEEEEHHHHCCCCCCCCCCCCEEE
T ss_conf -------4796699-4499999999999767-898998244888899967927999984114444367558421100179
Q ss_pred CCCCCC
Q ss_conf 334664
Q gi|254780808|r 151 VLTTGT 156 (626)
Q Consensus 151 iiatGt 156 (626)
|-+||.
T Consensus 157 vDaTGH 162 (229)
T pfam01946 157 VDATGH 162 (229)
T ss_pred EECCCC
T ss_conf 866889
No 112
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.32 E-value=1e-06 Score=67.32 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 84999999999999708996898-001011202588113222035863344543334664310134
Q gi|254780808|r 98 ADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162 (626)
Q Consensus 98 vDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~ 162 (626)
+|=..|...+.+.+..+ +.+++ ..+|++|..+++.+.+|.|..| .+.|..||+|+|......+
T Consensus 198 ~d~~~~~~~l~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~V~t~~g-~i~ad~vV~AaGaws~~l~ 261 (416)
T PRK00711 198 GDCQLFTQRLAALAEQL-GVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALL 261 (416)
T ss_pred ECHHHHHHHHHHHHHHC-CCCCCCCCCEEEEEEECCEEEEEECCCC-EEEEEEEEEECCHHHHHHH
T ss_conf 66799999999999853-8862002315899984998998853895-5750169993374369999
No 113
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.31 E-value=3.9e-06 Score=63.09 Aligned_cols=155 Identities=26% Similarity=0.339 Sum_probs=81.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH------CCCCC---------------------------CC
Q ss_conf 9876357889889426899999998589989999807626------01246---------------------------67
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------IGSMS---------------------------CN 47 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~------~ael~---------------------------Cn 47 (626)
|.+.+|||+|||||-.|+=.|..+|.+|.+|.|+||+-=. .--|+ |-
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A 87 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA 87 (532)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 43357778998986546999999986798499995476567666763457554166653065479999999999999758
Q ss_pred CCCC----CC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC---------CCCCHHHH
Q ss_conf 0022----11-------------2248999998630399999988631488730787----85---------55346787
Q gi|254780808|r 48 PAIG----GL-------------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK----GP---------AVRGPRTQ 97 (626)
Q Consensus 48 ps~g----g~-------------akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk----Gp---------Av~alraq 97 (626)
|.+. +. ..|+.. =|.|+|.--... -.|.++... -| |++=+-.+
T Consensus 88 PH~v~p~~~~lp~~~~~~~~~~~~~gl~l--yd~lag~~~~~p-----~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~ 160 (532)
T COG0578 88 PHLVEPLPFLLPHLPGLRDAWLIRAGLFL--YDHLAGIRKLLP-----ASRVLDPKEALPLEPALKKDGLKGAFRYPDGV 160 (532)
T ss_pred CCCCCCCCCEEECCCCCCCCHHHHHHHHH--HHHHHCCCCCCC-----CCEECCHHHHHHCCCCCCHHCCCCEEEECCCE
T ss_conf 66113686758636886522478868999--987625123587-----43311655520028654620045419970635
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC-----CCCCCCCCCCCCCCCHHHHH
Q ss_conf 8499999999999970899689800101120258811322203586-----33445433346643101344
Q gi|254780808|r 98 ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 98 vDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~-----~~~~~~viiatGtfl~g~~~ 163 (626)
+|=..+...+-..-..+=-.-+-..+|+.+..+++ +.||...+.. .+.++.||-||||+....+.
T Consensus 161 vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~ 230 (532)
T COG0578 161 VDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE 230 (532)
T ss_pred ECHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCC-EEEEEEEECCCCCEEEEECCEEEECCCCCHHHHHH
T ss_conf 24688999999999965301230461534554087-78999971578827998837799898701899987
No 114
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=98.31 E-value=9.5e-07 Score=67.47 Aligned_cols=130 Identities=26% Similarity=0.390 Sum_probs=79.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3578898894268999999985899899998076-260-12466700221122489999986303999999886314887
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STI-GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~-ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
.|||+|||||-+|==||--+|++|.||+|+|.+- -.. ==-=|=||==-+..+++..+++- -+|..+|.
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h-------~a~~~Gi~--- 70 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKH-------KAKDLGIE--- 70 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHH-------HHHHCCEE---
T ss_conf 95189987787727999999864980899980356874872776754788776678999998-------89867803---
Q ss_pred HCCCCCCCCCCHHHHHHHHHH-----------HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC---CCCCC
Q ss_conf 307878555346787849999-----------9999999970899689800101120258811322203586---33445
Q gi|254780808|r 83 LNVKKGPAVRGPRTQADRELY-----------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS---MIRCS 148 (626)
Q Consensus 83 ln~skGpAv~alraqvDR~~f-----------s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~---~~~~~ 148 (626)
..| . +.+|-..- ..-|.-.|.++ .|+++.++..=+. ...+.|....+. .+.++
T Consensus 71 ---~~~-~-----v~~d~~~~~~rK~~VV~~L~~Gv~~Llkkn-Kv~v~~G~a~~~~---~~~v~V~~~~~~~~~~~~~k 137 (481)
T TIGR01350 71 ---VEN-N-----VSVDWEKMQERKNKVVKKLVGGVKGLLKKN-KVTVIKGEAKFLD---PNTVSVTGENGEEEETLEAK 137 (481)
T ss_pred ---ECC-E-----EEECHHHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEEEEEC---CCEEEEECCCCCEEEEEEEE
T ss_conf ---367-1-----267589999998898754246789886306-8059999999985---85899835655311478740
Q ss_pred CCCCCCCCC
Q ss_conf 433346643
Q gi|254780808|r 149 TVVLTTGTF 157 (626)
Q Consensus 149 ~viiatGtf 157 (626)
.+|||||.-
T Consensus 138 ~~iiATGS~ 146 (481)
T TIGR01350 138 NIIIATGSR 146 (481)
T ss_pred EEEEECCCC
T ss_conf 379933860
No 115
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.30 E-value=6.5e-06 Score=61.56 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=81.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3578898894268999999985899899998076260124667002211--22489999986303999999886314887
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGHLVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~--akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
.-||+|||||-||--|||.||+.|+||+++|. ++|+||= +-|+|..+|-.= ...-..-|+-+|.|+-
T Consensus 25 e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~----------~ls~GGG~WgGGmlf~~iVv~-~~a~~iLde~gi~y~~ 93 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER----------KLSFGGGIWGGGMLFNKIVVQ-EEADEILDEFGIRYKE 93 (257)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEEC----------CCCCCCCCCCHHHHCCHHHHC-CHHHHHHHHCCCCCEE
T ss_conf 06889988882799999999868965999971----------346888631300013345400-5379999984997333
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCC-CCCEEEEEECCCC-----------CCCCCC
Q ss_conf 3078785553467878499999999999970899689800-10112025-8811322203586-----------334454
Q gi|254780808|r 83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTE-KNIISSIVMQDNS-----------MIRCST 149 (626)
Q Consensus 83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~-~~~~~~v~~~~g~-----------~~~~~~ 149 (626)
..-.+-. +|--.|.......... +|..+... .|.|+... ++++.||.+.+.. .+.|+.
T Consensus 94 -------~~~g~~v-~d~~~~~s~L~~~a~~-aGakifn~~~VEDli~r~~~rV~GvV~NWt~V~~~glhvDP~~i~ak~ 164 (257)
T PRK04176 94 -------VEDGLYV-ADSVEAAAKLAAGAID-AGAKIFNGVSVEDVIIREDGRVAGVVINWTPVEMAGLHVDPLTIEAKA 164 (257)
T ss_pred -------CCCCEEE-ECHHHHHHHHHHHHHH-CCCEEEECCEEEEEEEECCCCEEEEEECCHHHHHHCCCCCCCEECCCE
T ss_conf -------5896399-5089999999999974-798898230442156612881789996257756403555852011368
Q ss_pred CCCCCCC
Q ss_conf 3334664
Q gi|254780808|r 150 VVLTTGT 156 (626)
Q Consensus 150 viiatGt 156 (626)
||-+||-
T Consensus 165 VvdaTGH 171 (257)
T PRK04176 165 VVDATGH 171 (257)
T ss_pred EEECCCC
T ss_conf 9988898
No 116
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.30 E-value=5.9e-06 Score=61.81 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 78898894268999999985899899998076
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
||+|||||..|+=+||.|+|+|.+|++++-..
T Consensus 3 ~V~VIGaGivGlstA~~La~~G~~VtviDr~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 59998983999999999997899189996989
No 117
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29 E-value=5.7e-06 Score=61.94 Aligned_cols=146 Identities=16% Similarity=0.263 Sum_probs=79.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 5788988942689999999858998999980762601246670022112----24899999863039999998863148-
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG----KGHLVREIDALDGLMGRVADAAGIQF- 80 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a----kg~L~~Ei~aLgg~m~~~aD~~~i~~- 80 (626)
-||+|||||++|+=+|+.+|+.|++|.|+|.+...-.+..-+ ....| --.+..++.....+-..+.--..++.
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~~~~~~~~~d--~R~~als~~s~~~L~~lgiw~~l~~~~~~~~~i~v~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKD--IRTTALTPHSKNFLFSIDIWEELEKFVAEMQDVYVV 79 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--CCEEEECHHHHHHHHHCCCCHHHHHHHHCCEEEEEE
T ss_conf 629999966999999999985799699997899788665799--634674698999999869848678864231899997
Q ss_pred -----HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf -----873078785553467878499999999999970899689800-10112025881132220358633445433346
Q gi|254780808|r 81 -----RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT 154 (626)
Q Consensus 81 -----r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiat 154 (626)
..+... ......+.--+.+..+.+...+.+.++|+++++.. ++.++...++. .+...++..+.++-+|.|.
T Consensus 80 d~~~~~~~~~~-~~~~~~lgyii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~llIgaD 156 (374)
T PRK06617 80 DNKASEILDLR-NDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDKQIKCNLLIICD 156 (374)
T ss_pred CCCCCCEEECC-CCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCC--EEEECCCCEEEEEEEEEEC
T ss_conf 58988536424-56765434652138999999999964999489757511466527882--6996389678535899957
Q ss_pred CC
Q ss_conf 64
Q gi|254780808|r 155 GT 156 (626)
Q Consensus 155 Gt 156 (626)
|.
T Consensus 157 G~ 158 (374)
T PRK06617 157 GA 158 (374)
T ss_pred CC
T ss_conf 98
No 118
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=4.8e-07 Score=69.56 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=69.1
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788988942689999999858---99899998076260124667002211224899999863039999998863148873
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL 83 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~---G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l 83 (626)
.|+|||||+||..+|..+++. +++++|++.++... .+|.+=+.+ +|.+
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~----y~~~lp~~~-----------~g~~-------------- 51 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP----YSGMLPGMI-----------AGHY-------------- 51 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCE----ECCHHHHHH-----------HCCC--------------
T ss_conf 99999960999999999704178998399999988651----625169997-----------4047--------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r 84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
+.+.-+....+. ....++++++++|++|+.++.. |.+.+|..+.=...|+|||.-.
T Consensus 52 ---------------~~~~i~~~~~~~-~~~~gv~~i~~~V~~ID~~~k~---V~~~~g~~l~YD~LViAtGs~~ 107 (364)
T TIGR03169 52 ---------------SLDEIRIDLRRL-ARQAGARFVIAEATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred ---------------CHHHEECCHHHH-HHHCCCEEEEEEEEEEECCCCE---EEECCCCEEECCEEEEECCCCC
T ss_conf ---------------799922168999-9777949996378999768898---9988998873688999436777
No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=98.25 E-value=4.3e-06 Score=62.80 Aligned_cols=300 Identities=19% Similarity=0.211 Sum_probs=146.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 578898894268999999985899899998-0762-60124667002211224899999863039999998863148873
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL 83 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~-~~~~-~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l 83 (626)
|||||||||-||-=||.-++|.+++++|+| +.|. .=|+|.-.+.|=
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vE-------------------------------- 48 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVE-------------------------------- 48 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEE--------------------------------
T ss_conf 928998478678889999887467278983577774555333220651--------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCC----CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 07878555346787849999999999997089968980-01011202588----11322203586334454333466431
Q gi|254780808|r 84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~----~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
|. |-..-. +-=..+.+.|++-..+- ..+++- ++|..+...+. .+--+.|. .++.|++||+|||.--
T Consensus 49 NY---PGf~e~---i~G~~L~~~M~~Qa~~f-G~~~~~G~~v~~v~~~~~~yE~~~F~~~~~--~~y~a~avIiAtGa~~ 119 (321)
T TIGR01292 49 NY---PGFPEG---ISGPELMEKMKEQAKKF-GAEIIYGEEVIRVDKSDRAYESDPFKVKTG--KEYTAKAVIIATGAEA 119 (321)
T ss_pred CC---CCCCCC---CCHHHHHHHHHHHHHHC-CCCEEECCEEEEEECCCCCCCCCEEEEEEC--CEEEEEEEEEECCCHH
T ss_conf 36---868887---66288999999999870-673662670568633788436610389717--5688658999138715
Q ss_pred HHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHH---HHHCCCCCCCCCCCCCCCCCC
Q ss_conf 0134443202332224-751113310000101120054444544101100001344---321147876687774356578
Q gi|254780808|r 159 RGVIHIGKLKIPAGRM-GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK---TEKQFADERLIPFSFMTDKIT 234 (626)
Q Consensus 159 ~g~~~~g~~~~~~gr~-~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~---~e~q~~d~~~~~~s~~~~~~~ 234 (626)
+- .|-. ||....+=.- -+.+|| |+.+--|.. .-.--+|.
T Consensus 120 r~----------lg~~kGE~ef~GrGV-----------SyCA~C---DGA~~ffk~K~V~VvGGGds------------- 162 (321)
T TIGR01292 120 RK----------LGIPKGEDEFLGRGV-----------SYCATC---DGASPFFKNKEVAVVGGGDS------------- 162 (321)
T ss_pred HH----------CCCCCCHHHHCCCCE-----------EEEEHH---CCCCHHHCCCEEEEECCCCH-------------
T ss_conf 42----------378866455326866-----------672231---05401205988999879824-------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCC-CCCCCCCEEE-ECCCCCCEEEE
Q ss_conf 00000000123200147776402457541443235642-----22553212335676-4334520130-15787764543
Q gi|254780808|r 235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP-----RYCPSIEDKIVRFG-ERNGHQIFLE-PEGLNTDVVYP 307 (626)
Q Consensus 235 ~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gp-----rycPsie~k~~~~~-~~p~h~VqLr-pE~~~~~~~n~ 307 (626)
.-|...|++.-..+.+-+-|.+..+.....-+....-| =...+....+..-. .+=.- |-|. -.+-+.+++.+
T Consensus 163 A~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~-v~i~N~~t~e~~~l~v 241 (321)
T TIGR01292 163 ALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVES-VKIKNTVTGEEEELKV 241 (321)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEE-EEEEECCCCEEEEEEE
T ss_conf 888889998538767999779863632899989983789878996486899996178315533-5899623884889984
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH---HHHHHHHHH
Q ss_conf 47766689889999998754340010011000121102354565677654033415662133043346---666667789
Q gi|254780808|r 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY---EEAAAQGLV 384 (626)
Q Consensus 308 vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY---eEAAAqGl~ 384 (626)
.|+--.+=+.-..++|.-. -+.+.-..||-+= +-.+ -.|.+|. +||+|-||=|..-=+| +=||++|.+
T Consensus 242 dGvF~aIG~~P~t~~~~~~---G~~~~D~~GyI~t----~~~~-Gn~~~Ts-v~GvFAAGDv~~kW~~rQ~vTAag~G~~ 312 (321)
T TIGR01292 242 DGVFIAIGHEPNTELLKGL---GLLELDEGGYIVT----DEGL-GNTMRTS-VPGVFAAGDVRDKWGFRQAVTAAGDGCI 312 (321)
T ss_pred CEEEEEECCCCCHHHHHCC---CCEEECCCCCEEE----CCCC-CCEEECC-CCCEEEEEEEECCCCCEEEEEEECHHHH
T ss_conf 4478984120320576507---8346769986886----1754-8612306-6868973044068861376787000689
Q ss_pred HHHHHHHHC
Q ss_conf 999987420
Q gi|254780808|r 385 AGINSARKS 393 (626)
Q Consensus 385 AGiNa~~~~ 393 (626)
|...|.+++
T Consensus 313 AA~~a~~yL 321 (321)
T TIGR01292 313 AALSAERYL 321 (321)
T ss_pred HHHHHHHHC
T ss_conf 999998709
No 120
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=5e-06 Score=62.34 Aligned_cols=135 Identities=24% Similarity=0.343 Sum_probs=69.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 78898894268999999985899899998076--2601246670022112248999998630399999988631488730
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN 84 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln 84 (626)
.|+|||||-||..||..+|+.|.+|+|+|-.. -++----|-|| |.++-. -+.. ..+ +-++..++. + +
T Consensus 2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~GGtCln~GCiPs-----K~ll~~-a~~~-~~~-~~~~~~Gi~--~-~ 70 (458)
T PRK06912 2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEADLGGTCLNEGCMPT-----KSLLES-AEVH-DIV-RKANHYGIT--L-N 70 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHH-----HHHHHH-HHHH-HHH-HHHHHCCCC--C-C
T ss_conf 499990088999999999978595999958997874033684878-----999999-9999-999-766745950--1-2
Q ss_pred CCCCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCCC
Q ss_conf 7878555346787849999----999999997089968980010112025881132220358-633445433346643
Q gi|254780808|r 85 VKKGPAVRGPRTQADRELY----RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTF 157 (626)
Q Consensus 85 ~skGpAv~alraqvDR~~f----s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g-~~~~~~~viiatGtf 157 (626)
...+.+.-...+.-++.+ ++.+...++ ..++++++++..=. ++.. ..|....+ ..+.++.+|||||.-
T Consensus 71 -~~~~~id~~~~~~~~~~~v~~~~~~~~~~l~-~~~v~~i~G~a~f~--~~~~-v~V~~~~~~~~i~a~~iiIATGs~ 143 (458)
T PRK06912 71 -NGSISIDWKQMQARKSQIVTQLVQGIQYLMK-KNKIKVIQGKASFE--TDHR-VRVEYGGKEEVVDAEQFIIATGSE 143 (458)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEECEEEEE--CCCE-EEEECCCCEEEEEEEEEEECCCCC
T ss_conf -7875528999999999999999999999997-38918991527980--3886-899869961899741899988987
No 121
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=1.6e-05 Score=58.79 Aligned_cols=350 Identities=23% Similarity=0.235 Sum_probs=168.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHC-----CCCEEEEECCHHH----C-------C----CCCCCCCCC--CC---C-
Q ss_conf 987635788988942689999999858-----9989999807626----0-------1----246670022--11---2-
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKL-----GASTALITHKTST----I-------G----SMSCNPAIG--GL---G- 54 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~-----G~~v~L~~~~~~~----~-------a----el~Cnps~g--g~---a- 54 (626)
+|++.|||++||||-||+=||+-+|.. ..++.++++-.+. + + --+|+=.+| |- +
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~ 93 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSD 93 (486)
T ss_pred HHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 76510255897777267899999853213477328999980255554226644555211678997405763266331124
Q ss_pred --------HHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHCCCCCC-CC-CC-HHHHHHHHH------------------
Q ss_conf --------248999998-6303--9999998863148873078785-55-34-678784999------------------
Q gi|254780808|r 55 --------KGHLVREID-ALDG--LMGRVADAAGIQFRVLNVKKGP-AV-RG-PRTQADREL------------------ 102 (626)
Q Consensus 55 --------kg~L~~Ei~-aLgg--~m~~~aD~~~i~~r~ln~skGp-Av-~a-lraqvDR~~------------------ 102 (626)
.|.-++|.- --.. .-+.-.|++-+||-- | |+ -. +.-|+--..
T Consensus 94 g~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~------~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHi 167 (486)
T COG2509 94 GILNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGA------PGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHI 167 (486)
T ss_pred CCEECCCCCCCCHHHHHCCHHHHHHHHHCCCHHHEECCC------CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 202025666610454517858888887134165410379------86744478456666799997099960561246515
Q ss_pred -------HHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC----C
Q ss_conf -------99999999970899689800101120258811322203586334454333466431013444320233----2
Q gi|254780808|r 103 -------YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP----A 171 (626)
Q Consensus 103 -------fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~----~ 171 (626)
--+.|++.|++--.=-..+-+|.||..+++.+.+|.+..|..+.++.||+|.|---+.-+..-..+.. .
T Consensus 168 GTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~ 247 (486)
T COG2509 168 GTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRA 247 (486)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEECCCCCEEECCEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 75206999999999998558289952078899815870799992578487327799904764678999999862941124
Q ss_pred CCC-----CCCCCCCCCCHHHHHHH-HCCCCCC----------CCCCHH---HHCHHH-HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 224-----75111331000010112-0054444----------544101---100001-344321147876687774356
Q gi|254780808|r 172 GRM-----GDSPSNSLFNSFMKFDF-DTGRLKT----------GTPARL---DGKTII-WDKTEKQFADERLIPFSFMTD 231 (626)
Q Consensus 172 gr~-----~~~~s~~ls~~l~~~~~-~~~r~kt----------gtppri---~~~sid-f~~~e~q~~d~~~~~~s~~~~ 231 (626)
++. .|.+...+.+.- ++++ ..-+++| ++||+= ...|-+ |. .-.-+||...
T Consensus 248 ~p~dIGVRvE~p~~vmd~~~-~~~~~~k~~~~t~k~~~~VrtFCmcP~G~VV~e~~e~g~~---------~vNG~S~~~r 317 (486)
T COG2509 248 KPFDIGVRVEHPQSVMDPHT-RLGAAPKFLYYTKKYGDGVRTFCMCPGGEVVAENYEDGFV---------VVNGHSYYAR 317 (486)
T ss_pred CCEEEEEEEECCHHHHCCCC-CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEE---------EECCCCHHCC
T ss_conf 77068999853267507551-0134641578831579867898988997698564148668---------7756102012
Q ss_pred CCCC--CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CCCC-CC--
Q ss_conf 5780--00000001232001477764024575414432356422255321233567---------------6433-45--
Q gi|254780808|r 232 KITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF---------------GERN-GH-- 291 (626)
Q Consensus 232 ~~~~--~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~---------------~~~p-~h-- 291 (626)
.-.+ ..+...+..| .....|-.|..+++..-... +.|. |+
T Consensus 318 ~s~NtNfAllV~i~~t--------------------ep~~~~~ey~r~ia~lA~~lgGg~~i~Q~~gDf~~gRrSt~~ri 377 (486)
T COG2509 318 KSENTNFALLVTIEFT--------------------EPFEDGIEYGRSIARLATTLGGGKAIIQRVGDFLKGRRSTWSRI 377 (486)
T ss_pred CCCCCCEEEEEECCCC--------------------CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 3567633799844535--------------------78776579999999998875289615777668875886768885
Q ss_pred -CCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCH--------HHHCCCC-HHHHHHHHHHHCCC
Q ss_conf -2013015787764543477666898899999987543400100110001--------2110235-45656776540334
Q gi|254780808|r 292 -QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA--------IEYDYIN-PKELFPTLETKKIS 361 (626)
Q Consensus 292 -~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~--------ieyd~~~-P~~L~~tLe~k~~~ 361 (626)
-++..|-=.. +-+--++-.||+-+-..+.-+|+.|.+ +=||++ +|--|.+ --..+.. +.-.++
T Consensus 378 ~~~~v~PTlk~---v~pgDls~~lP~~v~~~iiE~le~ldk---~ipG~as~dtlLygvE~k~ys~ri~~d~~-~~t~i~ 450 (486)
T COG2509 378 GRVFVEPTLKP---VTPGDLSLALPDRVVEDLIEALENLDK---VIPGVASDDTLLYGVETKFYSVRIKVDED-LSTSIK 450 (486)
T ss_pred HCCCCCCCCCC---CCCCCHHHHCCHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEEEEEEEEEEEECCC-CEEEEC
T ss_conf 12466645244---544725553877899999999997640---38774265642661035666666761620-122023
Q ss_pred EEEEEEEEECCCH-HHHHHHHHHHHHHHHHHHC
Q ss_conf 1566213304334-6666667789999987420
Q gi|254780808|r 362 GLFLAGQINGTTG-YEEAAAQGLVAGINSARKS 393 (626)
Q Consensus 362 ~LffAGQI~GteG-YeEAAAqGl~AGiNa~~~~ 393 (626)
|||-||-=.|.+| -.-|||.|++|+--.+++.
T Consensus 451 gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 451 GLYPAGDGAGLARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 447765655521125787610289999999986
No 122
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.23 E-value=6.5e-06 Score=61.54 Aligned_cols=147 Identities=14% Similarity=0.257 Sum_probs=81.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHH---HHHH-HHHHH
Q ss_conf 357889889426899999998589989999807626012----466700221122489999986303---9999-99886
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS----MSCNPAIGGLGKGHLVREIDALDG---LMGR-VADAA 76 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae----l~Cnps~gg~akg~L~~Ei~aLgg---~m~~-~aD~~ 76 (626)
++||+|||||.+|+=+|+.+++.|++|.|+|.+|..... .+-.|-.-.+..+ =++-++.||- +..+ +..-.
T Consensus 2 ~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~-s~~~L~~lG~~~~l~~~~~~p~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPFDPQAPFEPRVSALSAA-SQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHH-HHHHHHHCCCHHHHHHHCCCCEE
T ss_conf 98899999059999999999618997899958997778776677898425567799-89999987981656873577612
Q ss_pred HHHHHHHCC-CCC--------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 314887307-878--------55534678784999999999999708996898-00101120258811322203586334
Q gi|254780808|r 77 GIQFRVLNV-KKG--------PAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIR 146 (626)
Q Consensus 77 ~i~~r~ln~-skG--------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~ 146 (626)
.+ ++-+. +.| .....+..-++.........+.+.+ .++++. ..+|+++...+.. +.+.+.+|..+.
T Consensus 81 ~~--~v~d~~~~~~~~f~~~~~~~~~lg~vv~~~~l~~~L~~~l~~-~~v~~~~~~~v~~~~~~~~~-~~v~l~~g~~i~ 156 (405)
T PRK05714 81 DM--QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHD-SDIGLLANARLEQMRRSGDD-WLLTLADGRQLR 156 (405)
T ss_pred EE--EEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCE-EEEEECCCCEEE
T ss_conf 45--520589862276441014764441123269999999999972-79889848789999983880-799967997986
Q ss_pred CCCCCCCCCC
Q ss_conf 4543334664
Q gi|254780808|r 147 CSTVVLTTGT 156 (626)
Q Consensus 147 ~~~viiatGt 156 (626)
++-+|.|-|.
T Consensus 157 a~llVgADG~ 166 (405)
T PRK05714 157 APLVVAADGA 166 (405)
T ss_pred CCEEEECCCC
T ss_conf 3889995899
No 123
>PRK06834 hypothetical protein; Provisional
Probab=98.23 E-value=3.7e-06 Score=63.29 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=78.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHH------
Q ss_conf 63578898894268999999985899899998076260124667002211224899999---863039999998------
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALDGLMGRVAD------ 74 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei---~aLgg~m~~~aD------ 74 (626)
.+|||+|||||.+|.-+|+.||+.|++|.++|.+++.-- -.| -|.++-.+-| +.+| +.-++..
T Consensus 2 ~~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~---~~~----RA~~l~~rt~eil~~~G-l~d~~~~~g~~~~ 73 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQEL---VGS----RAGGLHARTLEVLDQRG-IVDRFLAEGQVAQ 73 (488)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC---CCC----CEEEECHHHHHHHHHCC-CHHHHHHCCCCCC
T ss_conf 989899989388999999999976999999968999877---698----48477899999999879-9899984265211
Q ss_pred ---HHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf ---8631488730-7878555346787849999999999997089968980-0101120258811322203586334454
Q gi|254780808|r 75 ---AAGIQFRVLN-VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCST 149 (626)
Q Consensus 75 ---~~~i~~r~ln-~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~ 149 (626)
...+.+.+-. .+..|.+..+ .-..+.+...+.++.++ +++.. -||+++..++..+ .+.+.++..+.|+-
T Consensus 74 ~~~~~~~~~~~~~~p~~~~~~~~~----~Q~~lE~iL~~~l~~~~-~~v~~g~~v~~~~~~~~gV-~v~~~dg~ti~a~y 147 (488)
T PRK06834 74 VTGFAQIRLDISDFPTRHNYGLAL----RQNHIERILAEWVGELG-VPIYRGREVTGFTQDDTGV-DVELSDGSTLRAQY 147 (488)
T ss_pred CCCCCCEECCHHHCCCCCCCEEEE----EHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEE-EEEECCCCEEEEEE
T ss_conf 124012025676587777837885----48999999999998589-9798088899999839968-99988982798758
Q ss_pred CCCCCCC
Q ss_conf 3334664
Q gi|254780808|r 150 VVLTTGT 156 (626)
Q Consensus 150 viiatGt 156 (626)
+|-|-|.
T Consensus 148 lVGaDGa 154 (488)
T PRK06834 148 LVGCDGG 154 (488)
T ss_pred EEEECCC
T ss_conf 9970676
No 124
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.19 E-value=2.1e-05 Score=57.98 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCEEE-ECCHHHHCCCCHHHHHHHH-HHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998754340010011-0001211023545656776-5403341566213304334666666778999998742033
Q gi|254780808|r 318 IQHQFIRTIPGLEKVNIIR-PGYAIEYDYINPKELFPTL-ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK 395 (626)
Q Consensus 318 ~Q~rv~r~IPGLEnAef~R-~Gy~ieyd~~~P~~L~~tL-e~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~ 395 (626)
.+..+.+..|.|+.++|.. ++ +.-.-+.| . -|.+ +....+|+|+|+=-||- =-+.+-+||.-+|-.+.|
T Consensus 323 l~~~l~~~FP~L~~v~i~~~W~-G~~~~t~d--~-~P~iG~~~~~~gv~~a~Gy~G~-----Gv~~s~l~G~~lAdli~G 393 (460)
T TIGR03329 323 LTRSLRKFFPALAEVPIAASWN-GPSDRSVT--G-LPFFGRLNGQPNVFYGFGYSGN-----GVAPSRMGGQILSSLVLG 393 (460)
T ss_pred HHHHHHHHCCCCCCCCEEEEEE-CEECCCCC--C-CCEEEEECCCCCEEEEECCCCC-----CHHHHHHHHHHHHHHHCC
T ss_conf 9999998576555971789970-86363688--9-8469876799999999780797-----567899999999999749
Q ss_pred CC-CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 45-654653210799999988607877402442000122121157871366
Q gi|254780808|r 396 LD-CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR 445 (626)
Q Consensus 396 ~~-p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~R 445 (626)
.+ |++= . -|+..-..+==.||.|=+=.++=++.+-|.|+++.|
T Consensus 394 ~~~~~~~--~-----~~~~~~~~~~pPeP~r~lG~~~~~~~~~~~d~~e~~ 437 (460)
T TIGR03329 394 LDNPWTR--S-----PLVKGPLGYFPPEPIRYLGALVVRNAIRRKERAEDE 437 (460)
T ss_pred CCCHHHH--C-----HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9981343--8-----342299999999407899999999999988878746
No 125
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.18 E-value=7e-06 Score=61.32 Aligned_cols=147 Identities=18% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_conf 76357889889426899999998589989999807626012466700221122489999986303999999886314--8
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ--F 80 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~--~ 80 (626)
...|||+|||||.+|.-+|..|++.|++|.|+|-+++.... + -+++=.. --++-++.+| +.-.+.+..... .
T Consensus 10 ~~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~-p--rA~~l~~--rtleil~~lG-l~~~i~~~~~~~~~~ 83 (554)
T PRK06183 10 AHDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDY-P--RAVGIDD--EALRTFQSIG-LVDEVLPHTTPNHGM 83 (554)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-C--CEEEECH--HHHHHHHHCC-CHHHHHHCCCCCCEE
T ss_conf 89888899995989999999999779999999189998888-8--6899899--9999999878-989998418414318
Q ss_pred HHHCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEE-EEEC---CCCC
Q ss_conf 87307878-----------5553467878499999999999970899689800-10112025881132-2203---5863
Q gi|254780808|r 81 RVLNVKKG-----------PAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISS-IVMQ---DNSM 144 (626)
Q Consensus 81 r~ln~skG-----------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~-v~~~---~g~~ 144 (626)
+..+ ++| +-++..+-.+....+-+.+.+.++.+++++|..+ +|+++..+++.+.. +... ....
T Consensus 84 ~~~~-~~g~~~~~~~~~~~~~~~p~~~~~~Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ 162 (554)
T PRK06183 84 RFLD-AKGRCLADIAPTTDEFGWPRRNAFYQPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRET 162 (554)
T ss_pred EEEE-CCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEE
T ss_conf 9994-899789972687665687714461099999999999986899899938899999971884279999779995799
Q ss_pred CCCCCCCCCCCC
Q ss_conf 344543334664
Q gi|254780808|r 145 IRCSTVVLTTGT 156 (626)
Q Consensus 145 ~~~~~viiatGt 156 (626)
+.++-+|-|-|-
T Consensus 163 ira~ylVGaDGa 174 (554)
T PRK06183 163 VRARYVVGCDGA 174 (554)
T ss_pred EEEEEEEECCCC
T ss_conf 997689971788
No 126
>PRK04965 nitric oxide reductase; Provisional
Probab=98.18 E-value=8.8e-06 Score=60.60 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=61.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8763578898894268999999985899--899998076260124667-0022112248999998630399999988631
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
|+++ |+|||+|+||.-||-++-+.+. ++.+++-.+. .+.| |.+- +... ++ +.++.-
T Consensus 1 M~~~--IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~----~~Y~rp~Ls-----~~~~-----~~---~~~~~l-- 59 (378)
T PRK04965 1 MSNG--IVIIGSGFAARQLVKNIRKQDAHIPITLITADSG----DEYNKPDLS-----HVFS-----QG---QRADDL-- 59 (378)
T ss_pred CCCC--EEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCC----CCCCCCCCH-----HHHC-----CC---CCHHHH--
T ss_conf 9899--9999882999999999971194986999989999----887678166-----9882-----89---996895--
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 48873078785553467878499999999999970899689800-1011202588113222035863344543334664
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
.- .... ......||++..+ +|+.|+.+...+ +.+|..+.=...|||||-
T Consensus 60 -----------~~------~~~~--------~~~~~~~I~l~~~~~V~~ID~~~k~V----~~~g~~~~YDkLVLATGa 109 (378)
T PRK04965 60 -----------TR------QSAG--------EFAEQFNLRLFPHTWVTDIDAEAQVV----KSQGNQWQYDKLVLATGA 109 (378)
T ss_pred -----------HC------CCHH--------HHHHHCCEEEECCCEEEEECCCCCEE----EECCCEEECCEEEEECCC
T ss_conf -----------31------7989--------99874897998698999984646379----958919846879993588
No 127
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.17 E-value=6.6e-06 Score=61.50 Aligned_cols=133 Identities=26% Similarity=0.344 Sum_probs=79.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 357889889426899999998589989999807626012466700221-1-22489999986303999999886314887
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-L-GKGHLVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg-~-akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
.-||+|+|||-||--|||.+|+.|++|+++|.+ +|+|| + +-|+|...|-. -...-..-|+-+|.|+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~----------ls~GGG~w~GGmlf~~iVv-~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK----------LSFGGGIWGGGMLFNKIVV-REEADEILDEFGIRYEE 98 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEE----------CCCCCCCCCCCCCCCCEEE-CCHHHHHHHHHCCCCEE
T ss_conf 326799876850578999998679649999730----------1468763344333560444-25389999981985244
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC-CEEEEEECCCCC-----------CCCCCC
Q ss_conf 30787855534678784999999999999708996898001011202588-113222035863-----------344543
Q gi|254780808|r 83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSM-----------IRCSTV 150 (626)
Q Consensus 83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~-~~~~v~~~~g~~-----------~~~~~v 150 (626)
..-.+-+ +|--.|...+-..-..-+---+.--+|+|+...++ +++||.+.++.. +.++.|
T Consensus 99 -------~e~g~~v-~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~V 170 (262)
T COG1635 99 -------EEDGYYV-ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAV 170 (262)
T ss_pred -------CCCCEEE-ECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCHHHHCCCCCCCCEEEEEEE
T ss_conf -------5796698-32799999999998730810242324778998169946899982512220565427511247899
Q ss_pred CCCCCC
Q ss_conf 334664
Q gi|254780808|r 151 VLTTGT 156 (626)
Q Consensus 151 iiatGt 156 (626)
|-+||-
T Consensus 171 vDaTGH 176 (262)
T COG1635 171 VDATGH 176 (262)
T ss_pred EECCCC
T ss_conf 967888
No 128
>PRK07236 hypothetical protein; Provisional
Probab=98.16 E-value=8.5e-06 Score=60.69 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=78.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858998999980762601246670022-112-248999998630399999988631
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLG-KGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~g-g~a-kg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
|.+.+ |+|||||.||+=+|+.|++.|+.|.+||-.++.+. +.| |+. .....+-++.+|-...... ....
T Consensus 4 ~~~~k--V~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~~~~~------~~G~gi~l~p~~~~~L~~~G~~~~~~~-~~~~ 74 (386)
T PRK07236 4 MSKPR--AVVVGGSLGGLFAANLLRRAGWDVDVFERSPTELD------GRGGGIVLQPELLRALAFAGVELPADI-GVPS 74 (386)
T ss_pred CCCCC--EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC------CCEEEEECCHHHHHHHHHCCCCCHHHC-CCCC
T ss_conf 99996--89999368999999999858999899868998678------860499729889999997699564751-8765
Q ss_pred HHHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 4887307878555---34678784999999999999708996898-0010112025881132220358633445433346
Q gi|254780808|r 79 QFRVLNVKKGPAV---RGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT 154 (626)
Q Consensus 79 ~~r~ln~skGpAv---~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiat 154 (626)
..+..-...|.-. ..+..+..+...-+. .+...|+..+. -.+|+++..++.. +.+...+|....+..||-|-
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~---l~~~l~~~~i~~g~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGAD 150 (386)
T PRK07236 75 RERIYLDRDGRVVQRQPMPQTQTSWNVLYRA---LRAALPAEHYHAGEALERVEQDGDR-VTAHFADGREETADLLIGAD 150 (386)
T ss_pred CCEEEECCCCCEEEEECCCCCCHHHHHHHHH---HHHHCCCCEEEECCEEEEEEEECCE-EEEEECCCCEEEEEEEEECC
T ss_conf 6469994899788761487301149999999---9976899889959999999982997-99998799887762899658
Q ss_pred CCC
Q ss_conf 643
Q gi|254780808|r 155 GTF 157 (626)
Q Consensus 155 Gtf 157 (626)
|..
T Consensus 151 G~~ 153 (386)
T PRK07236 151 GGR 153 (386)
T ss_pred CCC
T ss_conf 877
No 129
>PRK08948 consensus
Probab=98.16 E-value=3.7e-05 Score=56.15 Aligned_cols=145 Identities=16% Similarity=0.254 Sum_probs=80.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHCCCCCCCCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57889889426899999998589---9899998076260124667002--211224-89999986303999999886314
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG---ASTALITHKTSTIGSMSCNPAI--GGLGKG-HLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~~~~~~~ael~Cnps~--gg~akg-~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
|||+|||||.+|.=.|+++++++ ++|.|+|-.+..... .|++ ..++=. --++-++.||= --.+.+.+ ..
T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~---~p~~d~Ra~al~~~s~~~L~~lGv-w~~l~~~~-~p 75 (392)
T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDA---HPGFDARAIALAAGTCQQLARIGV-WSALADCA-TA 75 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCCCEEEEECHHHHHHHHHCCC-CHHHHHHC-CC
T ss_conf 94999995899999999998616799849998278875445---788884345756999999998799-47778506-63
Q ss_pred HHHHCCC-CC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 8873078-78-----------555346787849999999999997089968980-0101120258811322203586334
Q gi|254780808|r 80 FRVLNVK-KG-----------PAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIR 146 (626)
Q Consensus 80 ~r~ln~s-kG-----------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~ 146 (626)
++-+.-+ .| ....++..-+......+...+.+...|+|++.. .+|+++..+... +.+.+.+|..+.
T Consensus 76 i~~i~v~d~~~~~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~-v~v~l~~g~~~~ 154 (392)
T PRK08948 76 ITHVHVSDRGHAGFVTLAAEDYGVAALGYVVELHDVGQRLFALLRKAPGVTLHCPARVANVARTQES-VTVTLDNGETLQ 154 (392)
T ss_pred CCEEEEEECCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCC-EEEEECCCCEEE
T ss_conf 0078984078776254376660885311278799999999999975899878558768998855882-799978998998
Q ss_pred CCCCCCCCCC
Q ss_conf 4543334664
Q gi|254780808|r 147 CSTVVLTTGT 156 (626)
Q Consensus 147 ~~~viiatGt 156 (626)
++-+|.|-|.
T Consensus 155 a~llVgaDG~ 164 (392)
T PRK08948 155 GKLLVAADGS 164 (392)
T ss_pred ECEEEEECCC
T ss_conf 3789991899
No 130
>PRK06126 hypothetical protein; Provisional
Probab=98.15 E-value=2.4e-05 Score=57.45 Aligned_cols=149 Identities=18% Similarity=0.244 Sum_probs=79.2
Q ss_pred CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987-6357889889426899999998589989999807626012466700221122489999986303999999886314
Q gi|254780808|r 1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
|.| .+.||+|||||.+|.-+|+.||+.|++|.++|-++.... -+-+.+=.. .-++-++.+| +.-.+.+. ++.
T Consensus 2 m~~~~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~---~~rA~~l~~--rtlEil~~lG-l~~~l~~~-g~p 74 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALELGRRGVDSILVERGDGTAF---NPKANATSA--RSMEHFRRLG-IADEVRSA-GLP 74 (545)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC---CCCEEEECH--HHHHHHHHCC-CHHHHHHC-CCC
T ss_conf 9998889989999498999999999987999999889999887---885899888--9999999879-88999850-787
Q ss_pred --------H------HHHCC----CC--------CCCCCC----HHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCC
Q ss_conf --------8------87307----87--------855534----67878499999999999970899689800-101120
Q gi|254780808|r 80 --------F------RVLNV----KK--------GPAVRG----PRTQADRELYRLAMQREILSQENLDVIQG-EVAGFN 128 (626)
Q Consensus 80 --------~------r~ln~----sk--------GpAv~a----lraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~ 128 (626)
| ..+.+ +. +..... +...+.....-....+.++.+++++|..+ |++++.
T Consensus 75 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Q~~lE~~L~~~~~~~~gv~v~~g~~~~~~~ 154 (545)
T PRK06126 75 ADYPTDIAYFTRLTGYELARITLPSAREAITPVGGPDGSWPSPELPHRIPQKYVEPILLEHAQAQPGVTLRYGHRLTDFE 154 (545)
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEE
T ss_conf 53466336886117668886216754433456544566556656335628899999999999748998898077899999
Q ss_pred CCCCCEEEE-EECC-CC--CCCCCCCCCCCCC
Q ss_conf 258811322-2035-86--3344543334664
Q gi|254780808|r 129 TEKNIISSI-VMQD-NS--MIRCSTVVLTTGT 156 (626)
Q Consensus 129 ~~~~~~~~v-~~~~-g~--~~~~~~viiatGt 156 (626)
.++..+... .... |. .+.|+-+|-|-|.
T Consensus 155 qd~~gV~~~~~~~~~g~~~~i~A~ylVGaDGa 186 (545)
T PRK06126 155 QDADGVTATVEDLDGGESLTIRADYLVGCDGA 186 (545)
T ss_pred ECCCCEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf 83894699999899994899987799974788
No 131
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.13 E-value=1.1e-05 Score=60.02 Aligned_cols=346 Identities=15% Similarity=0.136 Sum_probs=153.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHH-------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858998-999980762-------601246670022112248999998630399999
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTS-------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV 72 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~-------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~ 72 (626)
|+...+||+|||||.+|.=||+.|-++|+. +.++|.+.+ +...+.|+++= |..+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p----~~~~-------------- 65 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSP----KWLL-------------- 65 (443)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC----CCCC--------------
T ss_conf 7667554899898788999999999759986799970576678655566871676797----4011--------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCC--C
Q ss_conf 98863148873078785553467878499999999999970---899689800101120258811322203586334--4
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS---QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR--C 147 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~---~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~--~ 147 (626)
.-+...|+ ++..++.++. =|+ ++...++. ...|.+.....+.-..++.....|.+..+.... +
T Consensus 66 -~~~~~p~~------~~~~~~~~~~-~~~----y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a 133 (443)
T COG2072 66 -GFPFLPFR------WDEAFAPFAE-IKD----YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTA 133 (443)
T ss_pred -CCCCCCCC------CCCCCCCCCC-HHH----HHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEEC
T ss_conf -58888877------6556777643-899----99999998356045021452568863058870699964887522512
Q ss_pred CCCCCCCCCCCHHHHHH--HHCC----------------CCCCCC---C-CCCCCCCCCHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 54333466431013444--3202----------------332224---7-511133100001011200544445441011
Q gi|254780808|r 148 STVVLTTGTFLRGVIHI--GKLK----------------IPAGRM---G-DSPSNSLFNSFMKFDFDTGRLKTGTPARLD 205 (626)
Q Consensus 148 ~~viiatGtfl~g~~~~--g~~~----------------~~~gr~---~-~~~s~~ls~~l~~~~~~~~r~ktgtppri~ 205 (626)
+.||+|||.+-.+.+-. |... +.+.+. | -.++..+...+.+.+ ..-.+...+|+++.
T Consensus 134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~qRs~~~~~ 212 (443)
T COG2072 134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLSQRSPPHIL 212 (443)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCC-CEEEEEECCCCCCC
T ss_conf 67998305789897888788666686344410169613427887999898703999999997306-71789851797520
Q ss_pred HCHHHHHH-HHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00001344-32114787-6687774356578000000001232-----00147776402457541443235642225532
Q gi|254780808|r 206 GKTIIWDK-TEKQFADE-RLIPFSFMTDKITNRQIECGITRTN-----LETHRIIMENIKHSAIYSGDIKSYGPRYCPSI 278 (626)
Q Consensus 206 ~~sidf~~-~e~q~~d~-~~~~~s~~~~~~~~~q~~~~~~~t~-----~~~~~~~~~~~~~~~~~~g~~~~~gprycPsi 278 (626)
........ ......+. .+.-.............+|...... ..-.......++..+...+...-.+|+|-+.-
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 292 (443)
T COG2072 213 PKPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGD 292 (443)
T ss_pred CCHHCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECEEECCCCCCCHHHHHHHHCCCHHCCCCCCCCCHHCCCCCCCCCC
T ss_conf 33101565204333320266432122110121010103102567621456665113111003556550100576667665
Q ss_pred CCCC---CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCEEEECCHHHHCCCCHHHHHH
Q ss_conf 1233---5676433452013015787764543477666898899999987543400--1001100012110235456567
Q gi|254780808|r 279 EDKI---VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK--VNIIRPGYAIEYDYINPKELFP 353 (626)
Q Consensus 279 e~k~---~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEn--Aef~R~Gy~ieyd~~~P~~L~~ 353 (626)
.+-. ..|+.-.+--+.+++|-....- -.++-+.-.-.+-..++..=+||.- ....--+|.-..--.+...-++
T Consensus 293 ~r~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (443)
T COG2072 293 GRLVPDGDLFEAGASGDVEVVTEIIDRFT--EGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYK 370 (443)
T ss_pred CCEEECCCHHHHHCCCCCEEEECCCCCCC--CCCEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEC
T ss_conf 63300333223101477405663000466--7623058875000406871378741010012044154321346652211
Q ss_pred HHHHHCCCEEEEEEEEECCCHHHHHH
Q ss_conf 76540334156621330433466666
Q gi|254780808|r 354 TLETKKISGLFLAGQINGTTGYEEAA 379 (626)
Q Consensus 354 tLe~k~~~~LffAGQI~GteGYeEAA 379 (626)
.+..+..||+|+.+=.+.-++=..++
T Consensus 371 g~~~~~~pn~~~~~~~~~~~~~~~~~ 396 (443)
T COG2072 371 GLALSGGPNLFLIGGPTKASGGLKAA 396 (443)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 52004787257744766751010167
No 132
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=58.92 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=100.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCC---CC------CH----------------
Q ss_conf 76357889889426899999998589--98999980762601246670022---11------22----------------
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIG---GL------GK---------------- 55 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~g---g~------ak---------------- 55 (626)
+++|||+|||||--||=-|++|++++ .+|.|+|-..+--.+-|=|||== |+ .|
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98322999897389899999999738896599997057653334567653442554489855133999999999999999
Q ss_pred ---------HHH-----HHHHHHH----------HHHHHHHHHHHHHHHHHHCCCCCC--CCCCHH-HHHHHHHHHHHHH
Q ss_conf ---------489-----9999863----------039999998863148873078785--553467-8784999999999
Q gi|254780808|r 56 ---------GHL-----VREIDAL----------DGLMGRVADAAGIQFRVLNVKKGP--AVRGPR-TQADRELYRLAMQ 108 (626)
Q Consensus 56 ---------g~L-----~~Ei~aL----------gg~m~~~aD~~~i~~r~ln~skGp--Av~alr-aqvDR~~fs~~vt 108 (626)
|+| -.|++.| |=.|....|...+.-...|-..|+ |.+.+- -.||=..++..+-
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCEECHHHHHHHHH
T ss_conf 84986123680899978277899999999886579861442699999862965443651468757775076899999999
Q ss_pred HHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCHHH
Q ss_conf 999708996898001011202588113222035863-34454333466431013
Q gi|254780808|r 109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGV 161 (626)
Q Consensus 109 ~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~-~~~~~viiatGtfl~g~ 161 (626)
+.+..+-.--....||++|....+.+..+.|..|.. +.|+.||.+.|-.....
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~l 214 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPL 214 (429)
T ss_pred HHHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCHHHHHH
T ss_conf 999976978993483647899279659998347967899568998974517999
No 133
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=1.2e-05 Score=59.55 Aligned_cols=142 Identities=24% Similarity=0.355 Sum_probs=78.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998076260124----66700221122489999986303999999886314
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael----~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
+.|||+|||||-.|-=||+.+|++|.||.++|-.-|.+|-- =|=||=--++.+-.+||++.+.-+- .-+||
T Consensus 122 ~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~-----~~GI~ 196 (673)
T PTZ00153 122 EEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLY-----TYGIH 196 (673)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH-----HCCCC
T ss_conf 3579899998762899999999849869999368787477242777321199998735799886145565-----33751
Q ss_pred ---HHHHCCCCCCCCC-----CHHHHHHHHHHHHH-----------HHHHHHC------CCCCEEEHHHHCCCCCCCCCE
Q ss_conf ---8873078785553-----46787849999999-----------9999970------899689800101120258811
Q gi|254780808|r 80 ---FRVLNVKKGPAVR-----GPRTQADRELYRLA-----------MQREILS------QENLDVIQGEVAGFNTEKNII 134 (626)
Q Consensus 80 ---~r~ln~skGpAv~-----alraqvDR~~fs~~-----------vt~~l~~------~pni~i~~~eV~~l~~~~~~~ 134 (626)
|++ | .|.-++. +-..+.|+..-.++ ++..+++ ..+++++.+.-. + .+++.+
T Consensus 197 ~~~~g~-~-~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~-i-~~~~~v 272 (673)
T PTZ00153 197 SDAFGK-N-GKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGH-I-IDKNII 272 (673)
T ss_pred CCCCCC-C-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEE-E-CCCCEE
T ss_conf 132343-3-32221111222354211569999999999999875017767540676666663599933037-7-146347
Q ss_pred EEEEECCCCCCCCCCCCCCCCC
Q ss_conf 3222035863344543334664
Q gi|254780808|r 135 SSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 135 ~~v~~~~g~~~~~~~viiatGt 156 (626)
. ....+..+.++-+|||||.
T Consensus 273 ~--~~~~~~~~~aKnIIIATGS 292 (673)
T PTZ00153 273 K--GEKSGKEFKVKNIIIATGS 292 (673)
T ss_pred E--ECCCCCEEECCEEEECCCC
T ss_conf 7--4378855502307990188
No 134
>PRK02106 choline dehydrogenase; Validated
Probab=98.09 E-value=4.3e-06 Score=62.83 Aligned_cols=37 Identities=35% Similarity=0.550 Sum_probs=34.3
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 98763578898894268999999985-89989999807
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHK 37 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar-~G~~v~L~~~~ 37 (626)
||+-+||+||||||-|||-.|+.||+ -|.+|+|+|-=
T Consensus 1 ~~~~eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG 38 (555)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (555)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98871288998966899999999834989859998689
No 135
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.08 E-value=4.5e-06 Score=62.68 Aligned_cols=35 Identities=40% Similarity=0.650 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 35788988942689999999858998999980762
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
+|||+|||||+||.-||+.+|+.|.+|+|++.-..
T Consensus 2 k~DvlVIGgGLAGl~aAl~~a~~G~~v~lvs~Gqg 36 (425)
T PRK05329 2 KFDVVVIGGGLAGLTCALALAEAGKRCAIVAKGQS 36 (425)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 87789999529999999999977993899927843
No 136
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07 E-value=4.8e-06 Score=62.45 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 63578898894268999999985899899998076
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+.||||||||||+|-=||..|||.|.+|+++|.+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 97629998988789999999996899799996378
No 137
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.06 E-value=5.1e-06 Score=62.27 Aligned_cols=33 Identities=42% Similarity=0.652 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 578898894268999999985899899998076
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|||+|||||+||.-||..+|+.|.+|+|++.-.
T Consensus 1 fDviVIGgGLAGl~aai~~a~~G~~~~lvs~Gq 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 978999961999999999997799589993783
No 138
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.01 E-value=3.7e-05 Score=56.18 Aligned_cols=107 Identities=19% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858998--99998076260124667-002211224899999863039999998863
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAS--TALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDALDGLMGRVADAAG 77 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aLgg~m~~~aD~~~ 77 (626)
|..+ +|+|||||+||..||.++-+.|.. +.|++-.+ .++++ |.+- |+.+... .
T Consensus 1 M~~~--~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~----~~PY~Rp~Ls---k~~l~~~-------------~-- 56 (400)
T PRK09754 1 MKEK--TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER----HLPYERPPLS---KSMLLED-------------S-- 56 (400)
T ss_pred CCCC--EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC----CCCCCCHHCC---HHHHCCC-------------C--
T ss_conf 9967--2999977599999999998069499799998999----9988651073---9987699-------------7--
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 148873078785553467878499999999999970899689800-1011202588113222035863344543334664
Q gi|254780808|r 78 IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 78 i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
|....+ .+.+-| ...+|++..+ +|+.|..+... |.+.+|..+.-..+|||||.
T Consensus 57 -----------~~~~~l---~~~~~y---------~~~~I~l~~g~~v~~id~~~~~---V~l~~g~~~~YD~LviATGa 110 (400)
T PRK09754 57 -----------PQLQQV---LPANWW---------QENNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGA 110 (400)
T ss_pred -----------HHHHHC---CCHHHH---------HHCCCEEECCCEEEEECCCCCE---EEECCCCEEECCEEEECCCC
T ss_conf -----------244324---898799---------8789699889889997188988---99879988872605887788
Q ss_pred C
Q ss_conf 3
Q gi|254780808|r 157 F 157 (626)
Q Consensus 157 f 157 (626)
-
T Consensus 111 ~ 111 (400)
T PRK09754 111 A 111 (400)
T ss_pred C
T ss_conf 8
No 139
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.00 E-value=1.2e-05 Score=59.77 Aligned_cols=142 Identities=15% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH--CCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf 357889889426899999998589989999807626--012-466700221122489999986303999999886----3
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST--IGS-MSCNPAIGGLGKGHLVREIDALDGLMGRVADAA----G 77 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~--~ae-l~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~----~ 77 (626)
+-||+|||||.||.=+|+.|++.|++|.++|.+++- .|- ...+|. -++=++.|| +.-.+...+ .
T Consensus 2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~G~gi~l~pn--------~~~~L~~lG-l~~~l~~~~~~~~~ 72 (400)
T PRK06475 2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPN--------AMRHLERLG-VADRLSGTGVTPKA 72 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHH--------HHHHHHHCC-CHHHHHHCCCCCCE
T ss_conf 997999895889999999999789999999179988888847888889--------999999879-92788843888625
Q ss_pred HH------------HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEE-E-ECCC
Q ss_conf 14------------887307878555346787849999999999997089968980-0101120258811322-2-0358
Q gi|254780808|r 78 IQ------------FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSI-V-MQDN 142 (626)
Q Consensus 78 i~------------~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v-~-~~~g 142 (626)
+. ..+.+.+.. ....+...+.|..+.....+.+..+|++++.. .+|+++..++..+... . +..+
T Consensus 73 ~~~~d~~~~~~~~~~~~~~~~~~-~~~~p~~~i~R~~L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~ 151 (400)
T PRK06475 73 LYLMDGRKARPLLHMQLGDLARK-RWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSV 151 (400)
T ss_pred EEEEECCCCCEEEEECCCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCC
T ss_conf 99960786745652024432222-57896599778999999999997489948973878999995289604899738986
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 63344543334664
Q gi|254780808|r 143 SMIRCSTVVLTTGT 156 (626)
Q Consensus 143 ~~~~~~~viiatGt 156 (626)
..+.+..+|-|-|-
T Consensus 152 ~~~~adlvIGADGi 165 (400)
T PRK06475 152 ETVSAAYLIACDGV 165 (400)
T ss_pred EEEECCEEEECCCC
T ss_conf 69970689966997
No 140
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.00 E-value=9.8e-06 Score=60.27 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=34.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8763578898894268999999985899899998076
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|.+.|||+|||||--|+=.|+-+|.+|++|+|+|.+-
T Consensus 3 ~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~D 39 (503)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADD 39 (503)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 6774798999977889999999986799699993687
No 141
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.99 E-value=5.9e-06 Score=61.82 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=81.2
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788988942689999999858--998999980762601---246670022112248999998630399999988631488
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIG---SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~a---el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
||+|||||.||.=-|+.+++. +.+|+|++.+++..- ..=| +=....+.+- .++...-+. .+++
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~---fW~~~~~~~~-------~~~~~~W~~--~~v~ 68 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWS---DEFEDLGPLA-------PCVEHSWPG--YEVR 68 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEC---CCCCCCCCHH-------HHHHCEECC--EEEE
T ss_conf 989999529999999999740899819999789888889983854---5717877757-------776458796--7999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 7307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf 157 (626)
.-+.+.--....- .-+|...|..++.+.+.+.+++ ++++.|..+...+. ...|.+.+|..+.|+.|+-+.|+-
T Consensus 69 ~~~~~~~l~~~~Y-~~i~s~~f~~~~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~V~Dsr~~~ 141 (374)
T pfam05834 69 FPDGRRKLIGRGY-GRVSSDRLHEELLRRCAENGVI-RLNAKVASVDAEPV-ESLVVLEDGRTIRARLVIDARGAS 141 (374)
T ss_pred ECCCCEEECCCCC-EEEEHHHHHHHHHHHHHHCCCE-EECCEEEEEECCCC-CEEEEECCCCEEEEEEEEECCCCC
T ss_conf 2899747668870-7988899999999998657969-99137789753787-059992699587444999478766
No 142
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.97 E-value=1.1e-05 Score=59.83 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=33.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
++.|||+|||||-.|+=+|+-+|.+|++|+|+|..-
T Consensus 4 ~e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~D 39 (503)
T PRK13369 4 PEDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (503)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 883788999967888999999996899499982687
No 143
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.96 E-value=9.2e-06 Score=60.47 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 578898894268999999985899899998076
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|||+|||||-+|+=+||.||++|.+|+++|-..
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 929999932999999999997899499998999
No 144
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.93 E-value=9e-05 Score=53.44 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=81.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHH-HHHH-
Q ss_conf 57889889426899999998589--989999807626012466700221122-489999986303999999886-3148-
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGK-GHLVREIDALDGLMGRVADAA-GIQF- 80 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg~ak-g~L~~Ei~aLgg~m~~~aD~~-~i~~- 80 (626)
.||+|||||.+|.=+|+.|++.| ++|.+++..|+.. +.+++ .+++= ..=++.++.||= --.+...+ .++-
T Consensus 2 ~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~---~~~d~-Ra~al~~~s~~~L~~lGv-~~~l~~~~~~i~~~ 76 (403)
T PRK07333 2 RDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGA---WSRDP-RASAIAAAARRMLEALGV-WQEIAPEAQPITDM 76 (403)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC---CCCCC-EEEEECHHHHHHHHHCCC-HHHHHHHCCCCEEE
T ss_conf 83999994699999999998469996699982886668---78887-688867999999998798-78877516100279
Q ss_pred HHHCC-CC-----------C--CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 87307-87-----------8--555346787849999999999997089968980-010112025881132220358633
Q gi|254780808|r 81 RVLNV-KK-----------G--PAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMI 145 (626)
Q Consensus 81 r~ln~-sk-----------G--pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~ 145 (626)
.+-+. .. + ..+..+...+++........+.+++ +++++.. .+|+++..++.. +.+.+.++..+
T Consensus 77 ~v~d~~~~~~~~~~~l~f~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~~v~~~~~~~v~~i~~~~~~-v~v~l~~g~~i 154 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEA-LGIDLREATSVTDFETRDEG-VTVTLADGSTL 154 (403)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCE-EEEEECCCCEE
T ss_conf 99846557766642002464345688736874589999999999982-89989858857899974980-79997899899
Q ss_pred CCCCCCCCCCCC
Q ss_conf 445433346643
Q gi|254780808|r 146 RCSTVVLTTGTF 157 (626)
Q Consensus 146 ~~~~viiatGtf 157 (626)
.++-+|.|-|.-
T Consensus 155 ~a~llIgaDG~~ 166 (403)
T PRK07333 155 EARLLVAADGAR 166 (403)
T ss_pred EEEEEEECCCCC
T ss_conf 986999834876
No 145
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=0.00033 Score=49.42 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.0
Q ss_pred HCCCEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 03341566213304----------334666666778999998742033456
Q gi|254780808|r 358 KKISGLFLAGQING----------TTGYEEAAAQGLVAGINSARKSNKLDC 398 (626)
Q Consensus 358 k~~~~LffAGQI~G----------teGYeEAAAqGl~AGiNa~~~~~~~~p 398 (626)
..+||||.||-.+| --...|+-.-|-.||.+++..+.....
T Consensus 360 t~I~GLyAaGE~a~~GvHGANRLggNsLle~~VfGr~Ag~~aa~~~~~~~~ 410 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALREGIE 410 (570)
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 321533541142346766566642167788898699999999987633676
No 146
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.87 E-value=3.7e-05 Score=56.14 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=48.3
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECC-CHHHHH
Q ss_conf 764543477666898899999987543400--10011000121102354565677654033415662133043-346666
Q gi|254780808|r 302 TDVVYPNGISTALPEEIQHQFIRTIPGLEK--VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYEEA 378 (626)
Q Consensus 302 ~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEn--Aef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gt-eGYeEA 378 (626)
...+.-+|+.-+..+ +++ .++-+-|+ | ..+..++| .+||+|.||-+++- .=-..|
T Consensus 275 D~vlvavG~~P~~~~------------~~~~gv~ld~~G~-I--------~vd~~~~T-svpgIyAaGDv~~g~~~a~~A 332 (350)
T PRK12770 275 DTVITAIGEIPTPPF------------KKELGIELNRDGE-I--------KVDEKHMT-SREGVFAAGDVVTGPSKIGKA 332 (350)
T ss_pred CEEEEEECCCCCCCH------------HHHCCEEECCCCE-E--------EECCCCEE-CCCCEEEEECCCCCHHHHHHH
T ss_conf 789999777788413------------5415912889981-9--------86989744-899999801687888899999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 667789999987420334
Q gi|254780808|r 379 AAQGLVAGINSARKSNKL 396 (626)
Q Consensus 379 AAqGl~AGiNa~~~~~~~ 396 (626)
+++|-+|+.++.++++|+
T Consensus 333 ~~eG~~AA~~i~~yL~g~ 350 (350)
T PRK12770 333 LKSGLRAAQSIHEWLLGK 350 (350)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987769
No 147
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.87 E-value=0.00013 Score=52.41 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=63.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
.|+|||||.-|+|+|.+++++|.+|.|+++.+.-+ ++.+.
T Consensus 139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il-----~~~~d----------------------------------- 178 (427)
T TIGR03385 139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKIL-----NKLFD----------------------------------- 178 (427)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC-----CCCCC-----------------------------------
T ss_conf 89999963999999999997699899998468336-----55489-----------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 785553467878499999999999970899689800-1011202588113222035863344543334664310
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
...++.+++.++++ +|+++-+ .|+++..+ + ..+.+.+|..+.+..||+++|---+
T Consensus 179 --------------~~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~-~--~~~~l~~g~~i~~D~vi~a~G~~Pn 234 (427)
T TIGR03385 179 --------------EEMNQIVEEELEKH-EIELRLNEEVDSIIGE-E--RVGVITSGGVYQADMVILAIGVKPN 234 (427)
T ss_pred --------------HHHHHHHHHHHHHC-CCEEEECCEEEEEECC-C--CEEEEECCCEEECCEEEECCCCCCC
T ss_conf --------------99999999999975-9799979889999878-8--7899946999972899988774676
No 148
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.86 E-value=2.6e-05 Score=57.29 Aligned_cols=58 Identities=26% Similarity=0.489 Sum_probs=45.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH----------HHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3578898894268999999985899899998076----------26012466700221122489999986303
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT----------STIGSMSCNPAIGGLGKGHLVREIDALDG 67 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~----------~~~ael~Cnps~gg~akg~L~~Ei~aLgg 67 (626)
+|||+|||||+||.-||+++++.|.+|.+++-.- |-++.|+ | |-+.++++.-++||-.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsALhfsSGslDlLg~lP---d--G~~v~~~~~~l~AL~~ 69 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLDLLGRLP---D--GQAVTDIHDGLDALRQ 69 (421)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHCCC---C--CCCCCCCCCHHHHHHH
T ss_conf 630799767288889999999658807998577013102565177762098---9--8826661015889875
No 149
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=97.86 E-value=1.4e-05 Score=59.13 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=75.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 35788988942689999999858998999980762601246670022112248999998630399999988631488---
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR--- 81 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r--- 81 (626)
+-||+|||||.||.=+|+.|++.|++|.++|-+++-- .-.+. + ++.. .-++-|+.||-. ....+.......
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~-~~g~g--~-~l~p-~~~~~L~~lGl~-~~~~~~~~~~~~~~~ 74 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTS-VLPRA--G-GLNQ-RTMELLRQAGLE-DRILAEGAPHEGMGL 74 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCEE--E-EECH-HHHHHHHHCCCH-HHHHHCCCCCCEEEE
T ss_conf 9978999928899999999987799899992899988-78779--9-9898-999999987986-899850687510599
Q ss_pred -HHCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEE----ECCCCCCCCCC
Q ss_conf -73078785------553467878499999999999970899689-8001011202588113222----03586334454
Q gi|254780808|r 82 -VLNVKKGP------AVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIV----MQDNSMIRCST 149 (626)
Q Consensus 82 -~ln~skGp------Av~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~----~~~g~~~~~~~ 149 (626)
..+.++.+ ........+.|..+.+.+.+.+...+ +++ ...+|+++..+...+.... ...+..+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adl 153 (349)
T pfam01494 75 AFYNTSRRRADLDFLTSPPRVTVYPQTELEPILREHAEARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKY 153 (349)
T ss_pred EECCCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 98378642220145567762688629999999999998579-98996617877520599437999845899558999768
Q ss_pred CCCCCCCC
Q ss_conf 33346643
Q gi|254780808|r 150 VVLTTGTF 157 (626)
Q Consensus 150 viiatGtf 157 (626)
||-|-|..
T Consensus 154 vIgADG~~ 161 (349)
T pfam01494 154 LVGCDGGR 161 (349)
T ss_pred EECCCCCC
T ss_conf 84157776
No 150
>KOG1335 consensus
Probab=97.86 E-value=6.9e-05 Score=54.26 Aligned_cols=133 Identities=26% Similarity=0.409 Sum_probs=74.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 635788988942689999999858998999980762---60124667002211224899999863039999998863148
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
++|||+|||+|-.|--||.++|++|.+|.-+|.|-. ++=---|=||=--+.-+|+.+|+.-- .| ..-+|
T Consensus 38 ~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~--~~----~~rGi-- 109 (506)
T KOG1335 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE--DF----ASRGI-- 109 (506)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH--HH----HHCCC--
T ss_conf 66788998778725899999987154168873157536545643633538876333789988766--89----86093--
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHH----------HHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 87307878555346787849999999999----------99708996898001011202588113222035863344543
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQR----------EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV 150 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~----------~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~v 150 (626)
-|.+ |-.|+..+..+-.. .+...-+++++.+--+=+.+..-. +.-.......+.++-.
T Consensus 110 ---------~vs~--~~~dl~~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p~~V~-v~k~dg~~~ii~aKnI 177 (506)
T KOG1335 110 ---------DVSS--VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVS-VKKIDGEDQIIKAKNI 177 (506)
T ss_pred ---------CCCC--EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEE-EECCCCCCEEEEEEEE
T ss_conf ---------1132--004789999877778999766899887634838995137653874688-8535897337863169
Q ss_pred CCCCCC
Q ss_conf 334664
Q gi|254780808|r 151 VLTTGT 156 (626)
Q Consensus 151 iiatGt 156 (626)
|+|||.
T Consensus 178 iiATGS 183 (506)
T KOG1335 178 IIATGS 183 (506)
T ss_pred EEECCC
T ss_conf 996177
No 151
>PRK07208 hypothetical protein; Provisional
Probab=97.85 E-value=2.5e-05 Score=57.34 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC
Q ss_conf 9876357889889426899999998589989999807626012466700221
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg 52 (626)
|.+|+ |+|||||.||+=||+.|++.|.+|+++|.+. .+|=+.++-..+|
T Consensus 1 ~~~kk--v~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~-~vGGl~~t~~~~G 49 (474)
T PRK07208 1 TEKKS--VVIIGAGPAGLTAAYELVKRGYPVTILEADP-EVGGISRTVTYKG 49 (474)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEECC
T ss_conf 99875--9998976899999999986899759997899-8754477889899
No 152
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=97.80 E-value=9.5e-05 Score=53.26 Aligned_cols=151 Identities=17% Similarity=0.278 Sum_probs=97.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCHHHC-CCCCCCCCCCC--C----CHHHHHHHHHHHHHHHH-HHH
Q ss_conf 7889889426899999998589-----9899998076260-12466700221--1----22489999986303999-999
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG-----ASTALITHKTSTI-GSMSCNPAIGG--L----GKGHLVREIDALDGLMG-RVA 73 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G-----~~v~L~~~~~~~~-ael~Cnps~gg--~----akg~L~~Ei~aLgg~m~-~~a 73 (626)
||+|||||++|.=.|.+|++.| .+|+|+|..+..- ..-.=+|++-+ + +-=.+.+.|++=..+.. +++
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~ 80 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 80 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 96888473889999999841863124731799605211442211258765522010107999999867964452012126
Q ss_pred HHH-----------------HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--CEEEH-HHHCCCCCCC--
Q ss_conf 886-----------------3148873078785553467878499999999999970899--68980-0101120258--
Q gi|254780808|r 74 DAA-----------------GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQ-GEVAGFNTEK-- 131 (626)
Q Consensus 74 D~~-----------------~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pn--i~i~~-~eV~~l~~~~-- 131 (626)
--. .|+|+=-.-. | -..+|..-|.=....+...+.+.+.|| +++.. .+|..+....
T Consensus 81 p~~~~~V~D~~~~g~~~~P~~~~F~~~~~~-~-~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (445)
T TIGR01988 81 PIRDIHVSDGGSFGRAPHPAALHFDADEVG-G-PAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSK 158 (445)
T ss_pred CCCEEEEEECCCCCCCCCCEEEEECHHHCC-C-CCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCC
T ss_conf 320488872678888888636874434417-8-80112367118899999999999668964775167214774036775
Q ss_pred --CCEEEEEECCCCC---CCCCCCCCCCCCCCH
Q ss_conf --8113222035863---344543334664310
Q gi|254780808|r 132 --NIISSIVMQDNSM---IRCSTVVLTTGTFLR 159 (626)
Q Consensus 132 --~~~~~v~~~~g~~---~~~~~viiatGtfl~ 159 (626)
...+.+.+.+|.. +.|+.+|-|-|..-.
T Consensus 159 ~~~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~ 191 (445)
T TIGR01988 159 NDSDEVELTLSDGRQKLLLRARLLVGADGANSK 191 (445)
T ss_pred CCCCCEEEEECCCCEEEEEEECEEEEECCCCHH
T ss_conf 688607999708947678985327873586525
No 153
>PRK06847 hypothetical protein; Provisional
Probab=97.78 E-value=5.6e-05 Score=54.92 Aligned_cols=139 Identities=21% Similarity=0.353 Sum_probs=77.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q ss_conf 88988942689999999858998999980762601246670022112-24899999863039999998863148---873
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-KGHLVREIDALDGLMGRVADAAGIQF---RVL 83 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a-kg~L~~Ei~aLgg~m~~~aD~~~i~~---r~l 83 (626)
|+|||||.||.=+|+.|++.|++|.++|.+++.- +... |++ ...-++-++.|| +.-.+.+. +... ++.
T Consensus 7 V~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~-~~g~-----gi~l~~~~~~~L~~lG-l~~~i~~~-~~~~~~~~~~ 78 (375)
T PRK06847 7 VLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWR-PYGA-----GITLQGNTLRALKELG-VLDECLEH-GFGFDGVDIF 78 (375)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCE-----EEEECHHHHHHHHHCC-CHHHHHHH-CCCCCEEEEE
T ss_conf 9999966899999999996799999990899988-8860-----8988989999999879-95899960-7885229999
Q ss_pred CCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 07878-------------55534678784999999999999708996898-00101120258811322203586334454
Q gi|254780808|r 84 NVKKG-------------PAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCST 149 (626)
Q Consensus 84 n~skG-------------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~ 149 (626)
+ ..| +..... ..+.|..+.+...+.+... +++|. .-+|+++..++.. +.+...+|..+.+..
T Consensus 79 ~-~~G~~~~~~~~~~~~~~~~~~~-~~i~r~~L~~~L~~~~~~~-~~~v~~~~~v~~i~~~~~~-v~v~~~dG~~~~adl 154 (375)
T PRK06847 79 D-PAGHLLAEVPTPRVAGDDVPGG-GGIMRPTLARILADAARAS-GVDVRLGTTVTAIEQDDDG-VDVTFTDGTTGRYDL 154 (375)
T ss_pred E-CCCCEEEEECCHHHCCCCCCCE-EEEEHHHHHHHHHHHHHHC-CCEEEECCEEEEEEECCCE-EEEEECCCCEEEEEE
T ss_conf 6-8998899834312035667721-2770999999999989846-9979966589786664985-899985898899879
Q ss_pred CCCCCCCCC
Q ss_conf 333466431
Q gi|254780808|r 150 VVLTTGTFL 158 (626)
Q Consensus 150 viiatGtfl 158 (626)
+|-|-|...
T Consensus 155 lIGADG~~S 163 (375)
T PRK06847 155 VVGADGVYS 163 (375)
T ss_pred EEECCCCCC
T ss_conf 998578762
No 154
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.77 E-value=0.00023 Score=50.56 Aligned_cols=105 Identities=23% Similarity=0.415 Sum_probs=60.4
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 889889426899999998589--9899998076260124667-0022112248999998630399999988631488730
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN 84 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln 84 (626)
|+|||||+||..||..++|.+ ..+.+++-... +.--.|. |-+ +++.+.
T Consensus 3 vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~-~~y~~~~lp~~--------------~~~~~~-------------- 53 (443)
T PRK09564 3 IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDI-ISFGACGLPYF--------------VGGFFD-------------- 53 (443)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCCCCHHHHH--------------HCCCCC--------------
T ss_conf 9999960999999999981493999999948898-77765520344--------------405558--------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCCC
Q ss_conf 78785553467878499999999999970899689-80010112025881132220358633--44543334664
Q gi|254780808|r 85 VKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMI--RCSTVVLTTGT 156 (626)
Q Consensus 85 ~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~~~~g~~~--~~~~viiatGt 156 (626)
. ....+.+ ..+..+. .+|++ ...+|+.++.+...+..-....+..+ .-..+|||||.
T Consensus 54 --------~-----~~~~~~~-~~~~~~~-~gi~~~~~~~v~~id~~~k~v~~~~~~~~~~~~~~yD~LiiATGs 113 (443)
T PRK09564 54 --------D-----PNNMIAR-TPEEFIK-SGIDVKTEHEVVKVDFKNKTITVKNLKTGSIFNDTYDKLMIATGA 113 (443)
T ss_pred --------C-----HHHHHHH-CHHHHHH-CCCEEEECCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCC
T ss_conf --------9-----8998741-9999998-799999388899997468648998468761661346789996167
No 155
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=97.77 E-value=0.00026 Score=50.17 Aligned_cols=150 Identities=20% Similarity=0.321 Sum_probs=93.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH--------------CCCCCC-CCCC----------------------
Q ss_conf 889889426899999998589989999807626--------------012466-7002----------------------
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST--------------IGSMSC-NPAI---------------------- 50 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~--------------~ael~C-nps~---------------------- 50 (626)
|+|||||..|.=-||+|+++|.+|+|++.+++- ++|... ..+|
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t 80 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT 80 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97845318789999999974993899965860456778866433243266746767478999999997599999987317
Q ss_pred --------CCC-------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCC--CCCCCHH-HHHHHHHHHHHHHH
Q ss_conf --------211-------22489999986303999---999886314887307878--5553467-87849999999999
Q gi|254780808|r 51 --------GGL-------GKGHLVREIDALDGLMG---RVADAAGIQFRVLNVKKG--PAVRGPR-TQADRELYRLAMQR 109 (626)
Q Consensus 51 --------gg~-------akg~L~~Ei~aLgg~m~---~~aD~~~i~~r~ln~skG--pAv~alr-aqvDR~~fs~~vt~ 109 (626)
.|+ +-..-.++++.+.+..+ ..-+..++..-=.|-|-+ -|++.+. +|||=..|-++.-+
T Consensus 81 g~~~~y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~~~~~l~~~~~r~~EP~L~~~~~~a~~~p~d~~v~~r~l~~AL~~ 160 (357)
T TIGR02352 81 GLDTGYRQCGTLVVAFDEDDVEKLRQLADLQSATGMELEWLSGRALRRLEPYLSPGIRGAVYYPDDAHVDPRELLKALVK 160 (357)
T ss_pred CCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99512740525894078711688899999987528604650779999844252422033457486523371899999999
Q ss_pred HHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 997089968980-01011202588113222035863344543334664310
Q gi|254780808|r 110 EILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 110 ~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
.++.- ..++.+ -+|.++......+..+.|..+ .+.+..||+|+|.-..
T Consensus 161 ~~~~l-Gv~i~~~~~v~~~~~~~~~~~~~~~~~~-~~~ad~vV~A~G~wa~ 209 (357)
T TIGR02352 161 ALEKL-GVEIIEEVEVQEIEARGEKVTAVVTSSG-DVQADQVVLAAGAWAG 209 (357)
T ss_pred HHHHC-CCEEEECCCEEEEECCCCEEEEECCCCC-CEECCEEEEECCCCHH
T ss_conf 99856-9479862533564326766988528854-2655747993573334
No 156
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.76 E-value=0.00034 Score=49.33 Aligned_cols=135 Identities=22% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57889889426899999998589---9899998076--260124667002211224899999863039999998863148
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG---ASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
|||+|||+|=||-=||..+++.| ++|.|++.=| -|+==-=|=|| | +|.+= +...+-+.++.--+
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~GGTCVNVGCVPS-----K-~llra-----a~~~~~a~~~~~f~ 69 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLGGTCVNVGCVPS-----K-ILLRA-----AEVAHYARKPPFFV 69 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHH-----H-HHHHH-----HHHHHHHHCCCCCC
T ss_conf 9189982768999999999854887159999637897761585232745-----8-99999-----98876763477777
Q ss_pred HHHCCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC-CCCCCCCCC-CCCC
Q ss_conf 87307878555346787849-----9999999999970899689800101120258811322203-586334454-3334
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADR-----ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCST-VVLT 153 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR-----~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-~g~~~~~~~-viia 153 (626)
..+ ++-|+|.-.++.-+. ++=++...+.|++++|++++|++.. +.+.+.+-|... -|..+.... ++||
T Consensus 70 g~~--~~~~~v~~~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~---F~d~~~V~v~~~~GG~~~~~~k~~lIA 144 (494)
T TIGR02053 70 GLL--AATVEVDFEELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRAR---FKDPKTVKVDLAEGGREVVGAKRFLIA 144 (494)
T ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE---ECCCCEEEEECCCCCCCHHHCCCEEEE
T ss_conf 753--543442389999998899999877678999851798679986799---847878997278885004213866896
Q ss_pred CCC
Q ss_conf 664
Q gi|254780808|r 154 TGT 156 (626)
Q Consensus 154 tGt 156 (626)
||-
T Consensus 145 TGa 147 (494)
T TIGR02053 145 TGA 147 (494)
T ss_pred ECC
T ss_conf 467
No 157
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.76 E-value=0.0001 Score=52.99 Aligned_cols=305 Identities=19% Similarity=0.289 Sum_probs=141.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9876357889889426899999998589--98999980762601246670022112248999998630399999988631
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
||.++ |+|||||.+|.++|..+++.- +.+.|+.-+.-.+ . +. |..|+
T Consensus 1 ~~~~~--iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-~-----------~p-lL~ev---------------- 49 (405)
T COG1252 1 MMKKR--IVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-F-----------TP-LLYEV---------------- 49 (405)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-----------CH-HHHHH----------------
T ss_conf 99756--999898679999999764167887189991887666-6-----------30-33556----------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 48873078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
|...+ +-..-+.-..+.+....|++++++||++|+.++.+|. +.++..+.=...|+++|--.
T Consensus 50 -----------a~g~l----~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~---~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 50 -----------ATGTL----SESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVT---LADLGEISYDYLVVALGSET 111 (405)
T ss_pred -----------HCCCC----CHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEEE---ECCCCCCCCCEEEEECCCCC
T ss_conf -----------32877----7565213089984235744899978999715679899---57887023638999458766
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01344432023322247511133100001011200544445441011000013443211478766877743565780000
Q gi|254780808|r 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238 (626)
Q Consensus 159 ~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~ 238 (626)
+-. ..++.....++.+.+++.+.- +. ++. --|.++.....+.....+.----=+.--++
T Consensus 112 ~~f------gi~G~~E~a~~lks~edA~~i---r~---------~l~---~~fe~a~~~~~~~~~lti~IvGgG~TGVEl 170 (405)
T COG1252 112 NYF------GIPGAAEYAFGLKTLEDALRL---RR---------HLL---EAFEKASQEEDDRALLTIVIVGGGPTGVEL 170 (405)
T ss_pred CCC------CCCCHHHHCCCCCCHHHHHHH---HH---------HHH---HHHHHHHCCCCCCCEEEEEEECCCHHHHHH
T ss_conf 768------997878707777889999999---99---------999---999986335643441189998988238999
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEECCC-------
Q ss_conf 00001232001477764024575414432356422255321233567643-----------345201301578-------
Q gi|254780808|r 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER-----------NGHQIFLEPEGL------- 300 (626)
Q Consensus 239 ~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~-----------p~h~VqLrpE~~------- 300 (626)
.| +....-+.........+....-.....|||-.|..+.++.....+ ...|...+|++.
T Consensus 171 Ag---eL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~ 247 (405)
T COG1252 171 AG---ELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEE 247 (405)
T ss_pred HH---HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCCEEECCCCE
T ss_conf 99---999999987653347865318999825712135888899999999999879789869814897699179755883
Q ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH--
Q ss_conf ---776454347766689889999998754340010011000121102354565677654033415662133043346--
Q gi|254780808|r 301 ---NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY-- 375 (626)
Q Consensus 301 ---~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY-- 375 (626)
..+.+.-.|.+-+ .+.+.|-|+| --|-| =-+.+++|++..+|++|.+|-......=
T Consensus 248 ~I~~~tvvWaaGv~a~-------~~~~~l~~~e---~dr~G---------rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p 308 (405)
T COG1252 248 EIPADTVVWAAGVRAS-------PLLKDLSGLE---TDRRG---------RLVVNPTLQVPGHPDIFAAGDCAAVIDPRP 308 (405)
T ss_pred EEECCEEEECCCCCCC-------HHHHHCCHHH---HCCCC---------CEEECCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 7762779985777578-------6666327022---13489---------777578751699898699711103768887
Q ss_pred -----HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -----6666677899999874203345
Q gi|254780808|r 376 -----EEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 376 -----eEAAAqGl~AGiNa~~~~~~~~ 397 (626)
.-|-.||-.++-|..+.++|++
T Consensus 309 ~P~tAQ~A~Qqg~~~a~ni~~~l~g~~ 335 (405)
T COG1252 309 VPPTAQAAHQQGEYAAKNIKARLKGKP 335 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998118899999999999999964999
No 158
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=97.75 E-value=0.00012 Score=52.58 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 78499999999999970899689800101120258-811322203586334454333466
Q gi|254780808|r 97 QADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTG 155 (626)
Q Consensus 97 qvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~-~~~~~v~~~~g~~~~~~~viiatG 155 (626)
+.|..+|++..++..... +|+.+++.|+++..++ +.+..+.+.+|..+.+.-.|-|||
T Consensus 153 HfDA~k~~~~Lr~~a~~~-GV~~i~~~V~~v~~~~~G~I~sl~l~~G~~i~aDlfIDCTG 211 (457)
T pfam04820 153 HFDAALYARFLRRNAEAR-GVTRVEGKVVDVQLDADGFVTSLRLEDGREVEADLFIDCSG 211 (457)
T ss_pred EECHHHHHHHHHHHHHHC-CCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCC
T ss_conf 727999999999988857-98899847879998899967899967898887648997787
No 159
>PRK06996 hypothetical protein; Provisional
Probab=97.74 E-value=8.9e-05 Score=53.45 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHHHCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858----998999980762601246670022112248-999998630399999988
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKL----GASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDALDGLMGRVADA 75 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~----G~~v~L~~~~~~~~ael~Cnps~gg~akg~-L~~Ei~aLgg~m~~~aD~ 75 (626)
|...+|||+|||||.+|.=.|+.|||. |++|.|++.++..- +.+. -..++-.. -++-++.||-.- .+.
T Consensus 7 m~~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~---~~~d-~Ra~al~~~s~~~L~~lG~w~---~~~ 79 (397)
T PRK06996 7 MAAPDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAA---SAND-PRAIALSHGSRVLLETLGAWP---ADA 79 (397)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC---CCCC-CCEEEECHHHHHHHHHCCCCC---CCC
T ss_conf 999998889999279999999999601687896699976898666---7899-939997578999999879984---568
Q ss_pred HHHHHHHHCCC-CCC-----------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEE-ECC
Q ss_conf 63148873078-785-----------553467878499999999999970899689800-1011202588113222-035
Q gi|254780808|r 76 AGIQFRVLNVK-KGP-----------AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIV-MQD 141 (626)
Q Consensus 76 ~~i~~r~ln~s-kGp-----------Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~-~~~ 141 (626)
+.++ -.+.+ +|. ...++..-+......+...+.+...+ +++.++ ++..+..+...+.... +..
T Consensus 80 ~~i~--~~~v~~~~~~g~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (397)
T PRK06996 80 TPIE--HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTG-VTWLTSTTARAPAQDADGVTLALDTPQ 156 (397)
T ss_pred CCEE--EEEEEECCCCCCEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECCCEEEEEECCCCEEEEECCCC
T ss_conf 7425--9999405776621126544288522354437999999999997489-879834451457763674589960599
Q ss_pred C-CCCCCCCCCCCCCC
Q ss_conf 8-63344543334664
Q gi|254780808|r 142 N-SMIRCSTVVLTTGT 156 (626)
Q Consensus 142 g-~~~~~~~viiatGt 156 (626)
+ ..+.++-+|.|-|.
T Consensus 157 ~~~~i~a~llVgaDG~ 172 (397)
T PRK06996 157 GARTLRARIAVQAEGG 172 (397)
T ss_pred CCEEEEECEEEECCCC
T ss_conf 8659981899995999
No 160
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.72 E-value=4.5e-05 Score=55.58 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|||||||+||-=||+.|++.|.+|+++|.+.
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~ 31 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAGVRVTLFEARP 31 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 2998786899999999987899889994899
No 161
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.70 E-value=0.00028 Score=49.96 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=78.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHH--CC--CCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 7889889426899999998589-989999807626--01--246670022112248999998630--3999999886314
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTST--IG--SMSCNPAIGGLGKGHLVREIDALD--GLMGRVADAAGIQ 79 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~--~a--el~Cnps~gg~akg~L~~Ei~aLg--g~m~~~aD~~~i~ 79 (626)
.|+|||||.||.=+|++|+|.| +.|.+||..++- +| -..-.| -.+-++.|| -....+++.....
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~~~GagI~l~pn---------~~r~L~~lGl~~~~~~~~~~~~~~ 72 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGAN---------AVRAIVGLGLGEAYTQVADSTPAP 72 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECHH---------HHHHHHHCCCCHHHHHHHHCCCCC
T ss_conf 89999944899999999985399988999428988888329999989---------999999879916999986226876
Q ss_pred HHH-------------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE-EEHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 887-------------307878555346787849999999999997089968-980010112025881132220358633
Q gi|254780808|r 80 FRV-------------LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-VIQGEVAGFNTEKNIISSIVMQDNSMI 145 (626)
Q Consensus 80 ~r~-------------ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~-i~~~eV~~l~~~~~~~~~v~~~~g~~~ 145 (626)
+.. +..+-.|-.... .+.|..+...+.+.+ |.-. .....|+++...+.. +.|...+|+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~R~~L~~~L~~~~---~~~~~~~~~~v~~v~~~~~~-v~v~f~dG~~~ 146 (414)
T TIGR03219 73 WQDIWFEWRNGSDASYLGATIAPGVGQS--SVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEE-VQVLFTDGTEY 146 (414)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCC--EECHHHHHHHHHHHC---CCCEEEECCEEEEEEEECCE-EEEEECCCCEE
T ss_conf 4205787315776321253235788854--284999999998547---66677969899999995892-79998799887
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4454333466431
Q gi|254780808|r 146 RCSTVVLTTGTFL 158 (626)
Q Consensus 146 ~~~~viiatGtfl 158 (626)
.+..||-|-|-..
T Consensus 147 ~aDlVVGADGi~S 159 (414)
T TIGR03219 147 RCDLLIGADGIKS 159 (414)
T ss_pred ECCEEEECCCCCH
T ss_conf 2268997476423
No 162
>PRK07538 hypothetical protein; Provisional
Probab=97.69 E-value=0.00031 Score=49.64 Aligned_cols=140 Identities=24% Similarity=0.364 Sum_probs=74.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 788988942689999999858998999980762601246670022-112-24899999863039999998863148873-
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLG-KGHLVREIDALDGLMGRVADAAGIQFRVL- 83 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~g-g~a-kg~L~~Ei~aLgg~m~~~aD~~~i~~r~l- 83 (626)
||+|||||.||.=+|+.|++.|++|.++|-.++- .+ +| |+. -.+-+++++.|| +.-.. ++.+++.+-+
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~-~~------~G~gI~l~p~a~~~L~~lG-l~~~l-~~~g~~~~~~~ 72 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPEL-RP------LGVGINLLPHAVRELAELG-LLEAL-DAVGIRTRELV 72 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC-CC------CCEEEEECHHHHHHHHHCC-CHHHH-HHHCCCCCEEE
T ss_conf 8999990589999999999789998999369988-87------8528751879999999878-97899-86277763279
Q ss_pred --CCCCCC----------CCCC-HHHHHHHHHHHHHHHHHHHC-CCCCEE-EHHHHCCCCCCCCCEEEEE----ECCCCC
Q ss_conf --078785----------5534-67878499999999999970-899689-8001011202588113222----035863
Q gi|254780808|r 84 --NVKKGP----------AVRG-PRTQADRELYRLAMQREILS-QENLDV-IQGEVAGFNTEKNIISSIV----MQDNSM 144 (626)
Q Consensus 84 --n~skGp----------Av~a-lraqvDR~~fs~~vt~~l~~-~pni~i-~~~eV~~l~~~~~~~~~v~----~~~g~~ 144 (626)
|. .|. ++.. +.--+.|..+.....+.+.. -+...| .-.+|+++..++..+.... ..++..
T Consensus 73 ~~~~-~G~~i~~~~~g~~~g~~~p~~~i~R~~L~~~L~~~~~e~lg~~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~ 151 (413)
T PRK07538 73 FFNR-HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVS 151 (413)
T ss_pred EECC-CCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCEE
T ss_conf 9969-998987334664457888525650999999999999975699689967789898874995299997157887239
Q ss_pred CCCCCCCCCCCC
Q ss_conf 344543334664
Q gi|254780808|r 145 IRCSTVVLTTGT 156 (626)
Q Consensus 145 ~~~~~viiatGt 156 (626)
+.+..+|-|-|-
T Consensus 152 ~~adllVGADGi 163 (413)
T PRK07538 152 VRADVLIGADGI 163 (413)
T ss_pred EEECEEEECCCC
T ss_conf 984889988898
No 163
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=97.69 E-value=0.00016 Score=51.61 Aligned_cols=152 Identities=24% Similarity=0.365 Sum_probs=81.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHH-----HC--CCCCC--------------CCCC-------CCCC--H
Q ss_conf 7889889426899999998589-98999980762-----60--12466--------------7002-------2112--2
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTS-----TI--GSMSC--------------NPAI-------GGLG--K 55 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~-----~~--ael~C--------------nps~-------gg~a--k 55 (626)
||||||.|.||-=||+.+-+.| .+|.|+|--|- -+ |+|.. ||-+ ||-+ .
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC-C--------CCC-CCHHHHHHHHHHHHHHHHHHHCCC------CCE
Q ss_conf 489999986303999999886314887-30787-8--------555-346787849999999999997089------968
Q gi|254780808|r 56 GHLVREIDALDGLMGRVADAAGIQFRV-LNVKK-G--------PAV-RGPRTQADRELYRLAMQREILSQE------NLD 118 (626)
Q Consensus 56 g~L~~Ei~aLgg~m~~~aD~~~i~~r~-ln~sk-G--------pAv-~alraqvDR~~fs~~vt~~l~~~p------ni~ 118 (626)
--|+|-|--.+.-.....+.+++.|+. .+..- | |.+ .+..+-+=+ .+.+.+...- --+
T Consensus 81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~-----~L~~~a~~~gskDsnlv~~ 155 (487)
T TIGR01813 81 PELVRTLAEESADAVDWLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQ-----KLSKKAKKEGSKDSNLVET 155 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHCCCCCCCHHHH
T ss_conf 89999999878899887764221000111443278764643034788767840117-----7788774337743211221
Q ss_pred EEHHHHCCCCCCCC-CEEEEEECC------------CCCCCCCCCCCCCCCCC-HHHHH
Q ss_conf 98001011202588-113222035------------86334454333466431-01344
Q gi|254780808|r 119 VIQGEVAGFNTEKN-IISSIVMQD------------NSMIRCSTVVLTTGTFL-RGVIH 163 (626)
Q Consensus 119 i~~~eV~~l~~~~~-~~~~v~~~~------------g~~~~~~~viiatGtfl-~g~~~ 163 (626)
-.+-+|++|+.++. .|+||.... -....+++||||||-|- +-.-.
T Consensus 156 ~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~ 214 (487)
T TIGR01813 156 RLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKEL 214 (487)
T ss_pred HCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHH
T ss_conf 00672799998697118999962122588777787326755060689757613333899
No 164
>PRK05868 hypothetical protein; Validated
Probab=97.69 E-value=0.00011 Score=52.82 Aligned_cols=137 Identities=13% Similarity=0.165 Sum_probs=74.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH--CCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 889889426899999998589989999807626--012466700221122489999986303---999999886314887
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST--IGSMSCNPAIGGLGKGHLVREIDALDG---LMGRVADAAGIQFRV 82 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~--~ael~Cnps~gg~akg~L~~Ei~aLgg---~m~~~aD~~~i~~r~ 82 (626)
|+|||||-||.=+|+.|+|.|++|.++|-.|.- .|..+. |.+.| ++-++.||- +..+.....++++
T Consensus 4 VlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~---l~~~a----~~vL~~mGl~d~~~~~~~~~~~~~~-- 74 (372)
T PRK05868 4 VLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAID---VRGPA----LDVLERMGLLAAAQERKTRIRGASV-- 74 (372)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE---ECHHH----HHHHHHCCCHHHHHHHCCCCCCEEE--
T ss_conf 99989888999999999858998899957999888996674---68699----9999987897899861578642399--
Q ss_pred HCCC---------CCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 3078---------785553467---8784999999999999708996898-00101120258811322203586334454
Q gi|254780808|r 83 LNVK---------KGPAVRGPR---TQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCST 149 (626)
Q Consensus 83 ln~s---------kGpAv~alr---aqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~ 149 (626)
.+.. ..|.+.... .-+-|....+.+.+.+ .|+++++ ...|+.+..+... +.|...+|....+..
T Consensus 75 ~d~~G~~l~~~~~~~~~g~~~~~~~~~i~R~dL~~~L~~a~--~~~v~~~~g~~v~~i~~~~~~-V~V~f~dg~~~~~Dl 151 (372)
T PRK05868 75 VDRDGNELSRDTESTPTGGPINSPDIELLRDDLVELLYGAT--QPTVEYLFDDSISTLQDDGAA-VRVTFERAAAREFDL 151 (372)
T ss_pred EECCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHC--CCCEEEEECCEEEEEEECCCE-EEEEEECCCEEEEEE
T ss_conf 94899898752666655675688400031999999998634--588099957888999964997-999990798578658
Q ss_pred CCCCCCC
Q ss_conf 3334664
Q gi|254780808|r 150 VVLTTGT 156 (626)
Q Consensus 150 viiatGt 156 (626)
||-|-|.
T Consensus 152 VIGADGi 158 (372)
T PRK05868 152 VIGADGL 158 (372)
T ss_pred EEECCCC
T ss_conf 9974787
No 165
>PRK08132 hypothetical protein; Provisional
Probab=97.68 E-value=0.0004 Score=48.83 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=78.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 6357889889426899999998589989999807626012466700221122489999986303999999886314----
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ---- 79 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~---- 79 (626)
.+.||+|||||-+|.-+|..|+++|++|.++|-++.... .+ -+++=.. --++-++.+| +.-.+.+. ++.
T Consensus 22 ~~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~-~p--RA~~~~~--rtmeil~~lG-l~~~i~~~-g~~~~~~ 94 (549)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST-GS--RAICFSK--RSLEIFDRLG-CGERMVDK-GVSWNVG 94 (549)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CC--CEEEECH--HHHHHHHHCC-CHHHHHHC-CCCCCCC
T ss_conf 869999999257999999999987999999959999999-99--7888898--9999999869-92899961-7744464
Q ss_pred -----------HHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEE-EEECCCC-
Q ss_conf -----------8873078--78555346787849999999999997089968980-010112025881132-2203586-
Q gi|254780808|r 80 -----------FRVLNVK--KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISS-IVMQDNS- 143 (626)
Q Consensus 80 -----------~r~ln~s--kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~-v~~~~g~- 143 (626)
|.++... +-|..-.+ .| ..+-....+.+.++|+++|.. -||+++..++..+.. +.+.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~l-~Q---~~lE~~L~~~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~ 170 (549)
T PRK08132 95 KVFLRDEEVYRFDLLPEPGHRRPAFINL-QQ---YYIEGYLVDRAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDGPY 170 (549)
T ss_pred EEEECCCEEEEECCCCCCCCCCCCEEEC-CH---HHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 4885686577604788888766815867-99---9999999999986899789957689999984994699998799868
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3344543334664
Q gi|254780808|r 144 MIRCSTVVLTTGT 156 (626)
Q Consensus 144 ~~~~~~viiatGt 156 (626)
.+.|+-+|-|-|.
T Consensus 171 ~vrA~ylVGaDGa 183 (549)
T PRK08132 171 TLEADWVIACDGA 183 (549)
T ss_pred EEEEEEEEECCCC
T ss_conf 9998899863778
No 166
>KOG0029 consensus
Probab=97.66 E-value=7.6e-05 Score=53.96 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 63578898894268999999985899899998076
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
++.+|||||||+||.=||-||...|++|+++|-|-
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88838998985789999999997598259997147
No 167
>PRK06184 hypothetical protein; Provisional
Probab=97.65 E-value=8.7e-05 Score=53.52 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=35.5
Q ss_pred CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 987-6357889889426899999998589989999807626
Q gi|254780808|r 1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
|.+ .++||+|||||.+|.=+|+.||+.|++|.++|-+++.
T Consensus 1 m~~~~tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~ 41 (503)
T PRK06184 1 MTEYTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTP 41 (503)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99888579899990999999999999779989999489998
No 168
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=97.63 E-value=5.5e-05 Score=54.96 Aligned_cols=115 Identities=30% Similarity=0.486 Sum_probs=71.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
Q ss_conf 578898894268999999985899899998076260124667002211224899999863039999-9988631488730
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR-VADAAGIQFRVLN 84 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~-~aD~~~i~~r~ln 84 (626)
|||.|||||-+|-=||=.||+.|.+|.|+|-+++++ =+|==|| .=-|++|-|-=.+++-+ +... ||..
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~--KPCGGAI----Pp~li~EFdiP~~li~~r~~~~-----~miS 69 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRI--KPCGGAI----PPCLIEEFDIPDDLIDRRVRKA-----RMIS 69 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCC--CCCCCCC----CHHHCCCCCCCHHHHHHHHCEE-----EEEC
T ss_conf 967898168506899999986497488630243265--8888866----5110123578888997320064-----6777
Q ss_pred CC-----CC-----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC
Q ss_conf 78-----78-----55534678784999999999999708996898001011202588
Q gi|254780808|r 85 VK-----KG-----PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN 132 (626)
Q Consensus 85 ~s-----kG-----pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~ 132 (626)
.| -+ |-...==+=|||+.|=.+.+++=..- .=+++.+.+..|..+..
T Consensus 70 P~Gq~~~v~~~~~~P~~~~yVGMVrREvFD~~LReRA~ka-GAe~~~g~f~~~~~d~~ 126 (408)
T TIGR02023 70 PSGQEIAVEIKVDIPVEDGYVGMVRREVFDEYLRERAQKA-GAELIEGLFKKLERDED 126 (408)
T ss_pred CCCCCEECCCEEECCCCCCEEEEEEHHHCCHHHHHHHHHH-HHHHHHHHHHHHCCCCC
T ss_conf 7886100242024365886677755144157899998762-14766567552015677
No 169
>KOG2614 consensus
Probab=97.62 E-value=0.00072 Score=47.02 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=73.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148--873-
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF--RVL- 83 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~--r~l- 83 (626)
+|+|||||++|+=+|.+++|.|.+|..+|.+-+--++ --|++ ++.+ =.+-|+|.| ...-.+.-++.. |++
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~---g~si~-L~~n-g~~aLkai~--~~e~i~~~gip~~~~v~~ 76 (420)
T KOG2614 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE---GTSIN-LALN-GWRALKAIG--LKEQIREQGIPLGGRVLI 76 (420)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC---CCCEE-EHHH-HHHHHHHCC--CHHHHHHHCCCCCCEEEE
T ss_conf 4899888389899999998758748998621465558---84112-1442-899998726--189999716755652643
Q ss_pred CCCCC-CCCC---------CHHHHHHHHHHHHHHHHHHHCCCCCEEEH-----HHHCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 07878-5553---------46787849999999999997089968980-----010112025881132220358633445
Q gi|254780808|r 84 NVKKG-PAVR---------GPRTQADRELYRLAMQREILSQENLDVIQ-----GEVAGFNTEKNIISSIVMQDNSMIRCS 148 (626)
Q Consensus 84 n~skG-pAv~---------alraqvDR~~fs~~vt~~l~~~pni~i~~-----~eV~~l~~~~~~~~~v~~~~g~~~~~~ 148 (626)
-..+| +-++ -+|+ +-|.+-.....+.+. +++|...- -.+.++..- +.-.-|.+.+|..+.+.
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~-~~r~ll~~lL~~a~~-~~~ikf~~~~~~~~~~~~~~~~-~~~~~v~l~~g~~~~~d 153 (420)
T KOG2614 77 HGDSGKEVSRILYGEPDEYILRI-NRRNLLQELLAEALP-TGTIKFHSNLSCTSKDVEIETL-GKKLVVHLSDGTTVKGD 153 (420)
T ss_pred ECCCCCEEEECCCCCCHHHHHHH-HHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCEEEEC-CCCCCEECCCCCEEEEE
T ss_conf 14788756740158835777788-899999999973168-8715512110011344231000-34443012787478740
Q ss_pred CCCCCCCCC
Q ss_conf 433346643
Q gi|254780808|r 149 TVVLTTGTF 157 (626)
Q Consensus 149 ~viiatGtf 157 (626)
-+|-+-|-.
T Consensus 154 lligCDGa~ 162 (420)
T KOG2614 154 LLIGCDGAY 162 (420)
T ss_pred EEEECCCHH
T ss_conf 899757528
No 170
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.59 E-value=0.00038 Score=48.98 Aligned_cols=107 Identities=14% Similarity=0.295 Sum_probs=60.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8898894268999999985899--89999807626012466700221122489999986303999999886314887307
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~ 85 (626)
|+|||||+||.-||-++.|++- ++.+++..+. +.-..|.=+. . +++.+ .|...
T Consensus 4 iVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~-~~y~~~~lp~-------~------~~~~~---~~~~~-------- 58 (438)
T PRK13512 4 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD-MSFANCALPY-------V------IGEVV---EDRKY-------- 58 (438)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCHHHH-------H------HCCCC---CCHHH--------
T ss_conf 9998984999999999994391999999968998-8876236679-------8------77886---65243--------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCC
Q ss_conf 878555346787849999999999997089968980-0101120258811322203586--3344543334664
Q gi|254780808|r 86 KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGT 156 (626)
Q Consensus 86 skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~--~~~~~~viiatGt 156 (626)
.- . ..- +......||++.- .+|++|..+...+.......+. ++.=...|+|||.
T Consensus 59 -----~~---~-~~~--------~~~~~~~~I~v~~~~~v~~Id~~~k~v~~~~~~~~~~~e~~YDkLviATGs 115 (438)
T PRK13512 59 -----AL---A-YTP--------EKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred -----HH---C-CCH--------HHHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCEEECCCCEEEEECCC
T ss_conf -----22---0-698--------999987797999276899980666789995066674232134589996798
No 171
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0001 Score=52.99 Aligned_cols=109 Identities=28% Similarity=0.500 Sum_probs=63.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998076260124-----6670022112248999998630399999988631
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-----SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael-----~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
..|||.|||||-||.-||..+||.|++|-|+.-| ||-. .--|=|+-
T Consensus 210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aer---fGGQvldT~~IENfIsv-------------------------- 260 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---FGGQVLDTMGIENFISV-------------------------- 260 (520)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHH---HCCEECCCCCHHHEECC--------------------------
T ss_conf 8834999868863167899998612111001565---18820000033330056--------------------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCC--CCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 488730787855534678784999999999999708996898001-011202--58811322203586334454333466
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTG 155 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~--~~~~~~~v~~~~g~~~~~~~viiatG 155 (626)
|..-++ .++.+..+-+...+ +++.... ++.|.. .++....|.+..|..+.++.+|++||
T Consensus 261 ----------~~teGp-------kl~~ale~Hv~~Y~-vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstG 322 (520)
T COG3634 261 ----------PETEGP-------KLAAALEAHVKQYD-VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATG 322 (520)
T ss_pred ----------CCCCCH-------HHHHHHHHHHHHCC-CHHHHHHHHHCCEECCCCCCCEEEEECCCCEECCCEEEEECC
T ss_conf ----------545466-------89999999876468-245533434202015788860799954783511316998427
Q ss_pred CCCH
Q ss_conf 4310
Q gi|254780808|r 156 TFLR 159 (626)
Q Consensus 156 tfl~ 159 (626)
.--+
T Consensus 323 ArWR 326 (520)
T COG3634 323 ARWR 326 (520)
T ss_pred CCHH
T ss_conf 6420
No 172
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.58 E-value=0.00011 Score=52.75 Aligned_cols=31 Identities=39% Similarity=0.523 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Q ss_conf 889889426899999998589--9899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLG--ASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~ 38 (626)
|+|||||+||.=|||.|++.| ++|+|+|-+.
T Consensus 3 V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~ 35 (452)
T PRK11883 3 VAIIGGGISGLTAAYRLHKKGPDADITLLEASD 35 (452)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 999998789999999999649799789998899
No 173
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.55 E-value=0.00027 Score=50.01 Aligned_cols=146 Identities=15% Similarity=0.283 Sum_probs=96.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCHHHCCCCCCC--C------CCCC------CC--HHHHHHHHHHH
Q ss_conf 7889889426899999998589-----9899998076260124667--0------0221------12--24899999863
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG-----ASTALITHKTSTIGSMSCN--P------AIGG------LG--KGHLVREIDAL 65 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G-----~~v~L~~~~~~~~ael~Cn--p------s~gg------~a--kg~L~~Ei~aL 65 (626)
||||||||++|.==|++|++.| ++|.|+|.+.-.=+.-+-+ . |-|+ +| .-|+-.++...
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~ 80 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPF 80 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 97888565899999999850677557615898656574424686423565046876899999985386331257886013
Q ss_pred -HHHHHHH--HHHHH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCC-----
Q ss_conf -0399999--98863---1488730787855534678784999999999999708996898-0010112025881-----
Q gi|254780808|r 66 -DGLMGRV--ADAAG---IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNI----- 133 (626)
Q Consensus 66 -gg~m~~~--aD~~~---i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~----- 133 (626)
..-|-.+ .|... +++ |.+ --.+.||+.=|.=..+.+..-+.|...++|+++ -.++.+|..+.+.
T Consensus 81 ratpI~~IhVSD~g~fG~~~~---~~~-~~~~~aLGyVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveql 156 (425)
T TIGR01984 81 RATPIKDIHVSDQGHFGATEL---RAS-EFGLPALGYVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQL 156 (425)
T ss_pred CCCCCCEEEEEECCCEEEEEE---CHH-HCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECC
T ss_conf 678775168864583001341---253-6287645314217899999999986256651125753211210578630005
Q ss_pred --------EEEEEE-CCCC----CCCCCCCCCCCCC
Q ss_conf --------132220-3586----3344543334664
Q gi|254780808|r 134 --------ISSIVM-QDNS----MIRCSTVVLTTGT 156 (626)
Q Consensus 134 --------~~~v~~-~~g~----~~~~~~viiatGt 156 (626)
+..|.+ .++. .+.|+-+|.|-|-
T Consensus 157 PradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGG 192 (425)
T TIGR01984 157 PRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGG 192 (425)
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCC
T ss_conf 666655103578883088756405553088985586
No 174
>PRK07233 hypothetical protein; Provisional
Probab=97.55 E-value=0.00011 Score=52.70 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+|||||+||-=||+.|++.|.+|+++|-+.
T Consensus 2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~ 32 (430)
T PRK07233 2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADD 32 (430)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8999977899999999983999889995899
No 175
>PRK07588 hypothetical protein; Provisional
Probab=97.54 E-value=0.00017 Score=51.46 Aligned_cols=136 Identities=17% Similarity=0.154 Sum_probs=73.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH--HCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 88988942689999999858998999980762--6012466700221122489999986303---999999886314887
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREIDALDG---LMGRVADAAGIQFRV 82 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~--~~ael~Cnps~gg~akg~L~~Ei~aLgg---~m~~~aD~~~i~~r~ 82 (626)
|+|||||.||.=+|+.|+|.|+.|.++|-.|+ ..|..+. +.+ .=++-++.||= +.........+ +.
T Consensus 3 VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G~~i~---l~~----~~~~vl~~lGl~d~l~~~~~~~~~~--~~ 73 (391)
T PRK07588 3 IAISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGGYMVD---FWG----VGYEVAKRMGITDQLAEAGYQIEHI--RS 73 (391)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE---ECC----HHHHHHHHCCCHHHHHHCCCCCEEE--EE
T ss_conf 99999328999999999868999899903898887733872---383----9999999879938998527885069--99
Q ss_pred HCCCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 3078785-------------5534678784999999999999708996898-0010112025881132220358633445
Q gi|254780808|r 83 LNVKKGP-------------AVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCS 148 (626)
Q Consensus 83 ln~skGp-------------Av~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~ 148 (626)
.+. .|- .+... ..+-|..+.+.+.+.++ ++++++ ..+|+++...++. +.|...+|....+.
T Consensus 74 ~~~-~G~~~~~~~~~~~~~~~~~~~-~~i~R~dL~~~L~~~~~--~~v~v~~g~~v~~i~~~~dg-V~v~f~dG~~~~~D 148 (391)
T PRK07588 74 VGP-TGRVKADLNVDVFRRMVGDDF-TSLPRGDLAATIYTTIE--GQVETIFDDSIATIDEHRDG-VRLTLERGTPRDFD 148 (391)
T ss_pred ECC-CCCEEEECCCHHHCCCCCCCC-EEECHHHHHHHHHHHCC--CCCEEEECCEEEEEEECCCE-EEEEECCCCEEEEE
T ss_conf 999-998887437123111347752-14539999999997514--48789979999999962995-89998799888875
Q ss_pred CCCCCCCCC
Q ss_conf 433346643
Q gi|254780808|r 149 TVVLTTGTF 157 (626)
Q Consensus 149 ~viiatGtf 157 (626)
.||-|-|-.
T Consensus 149 lvVGADGi~ 157 (391)
T PRK07588 149 LVIGADGLH 157 (391)
T ss_pred EEEECCCCC
T ss_conf 999548764
No 176
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00014 Score=52.14 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC------CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9997089968980-0101120258811322203586------3344543334664310134443
Q gi|254780808|r 109 REILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS------MIRCSTVVLTTGTFLRGVIHIG 165 (626)
Q Consensus 109 ~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~------~~~~~~viiatGtfl~g~~~~g 165 (626)
.....+||++|.- ..|+.|..+..+.++|....+. ...++-|||++|.+-+..+..-
T Consensus 210 ~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~ 273 (542)
T COG2303 210 KPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL 273 (542)
T ss_pred HHHHHCCCCEEECCCEEEEEEEECCEEEEEEEEECCCCCEEEEECCCEEEECCCCCCCHHHHHH
T ss_conf 6675089838963788999999898689999996898633688517879985676379999986
No 177
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.52 E-value=0.00026 Score=50.15 Aligned_cols=45 Identities=20% Similarity=0.072 Sum_probs=38.2
Q ss_pred HHHHHCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 765403341566213-3043346666667789999987420334565
Q gi|254780808|r 354 TLETKKISGLFLAGQ-INGTTGYEEAAAQGLVAGINSARKSNKLDCI 399 (626)
Q Consensus 354 tLe~k~~~~LffAGQ-I~GteGYeEAAAqGl~AGiNa~~~~~~~~p~ 399 (626)
+++| .+||+|.||- ++|-.==++|.++|-.|+....+++.|+.++
T Consensus 427 ~~~T-s~~gVFA~GD~~~G~~~vv~Ai~~Gr~AA~~I~~~L~G~~~~ 472 (472)
T PRK12810 427 AYQT-SNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGSTPL 472 (472)
T ss_pred CCCC-CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8745-999999836877781699999999999999999984799899
No 178
>PRK06116 glutathione reductase; Validated
Probab=97.50 E-value=0.00072 Score=47.00 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHHHHCCCC------CC-CCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf 567765403341566213304334666-6667789999987420334------56-54653-210799999988607877
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSARKSNKL------DC-ICFSR-TDSYIGVMIDDLTSKGVL 421 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~~~~~~~------~p-~~l~R-~eaYiGVlIDDLitkg~~ 421 (626)
.|..+|| .+||+|.||-+||---..- |..||.+|+-|+.-..... -| .++.- .-|.+|.--+++..++..
T Consensus 287 vd~~~~T-s~~~IyA~GDv~g~~~lah~A~~~g~~~a~~i~~~~~~~~~~~~~iP~~vft~PeiA~VGlte~eA~~~~~~ 365 (450)
T PRK06116 287 VDEYQNT-NVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAIEQYGD 365 (450)
T ss_pred CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCC
T ss_conf 7877777-886337500146876766899999999999981899976525686336885264018887899999973799
Q ss_pred CCHHH
Q ss_conf 40244
Q gi|254780808|r 422 EPYRM 426 (626)
Q Consensus 422 EPYRM 426 (626)
...+.
T Consensus 366 ~~v~v 370 (450)
T PRK06116 366 DNVKV 370 (450)
T ss_pred CCEEE
T ss_conf 75899
No 179
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.50 E-value=0.00072 Score=47.00 Aligned_cols=88 Identities=22% Similarity=0.380 Sum_probs=51.2
Q ss_pred HHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCC-----CCCCCC
Q ss_conf 340010011000121102354565677654033415662133043346-66666778999998742033-----456546
Q gi|254780808|r 328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKSNK-----LDCICF 401 (626)
Q Consensus 328 GLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY-eEAAAqGl~AGiNa~~~~~~-----~~p~~l 401 (626)
|||++.+- .++-++ ..|..+|| .+||+|.+|-+||.--- -.|..||.+|+-|+.-.-.. .++.++
T Consensus 280 ~l~~~gv~-----~~~g~I---~Vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~a~~~~~g~~~~~~~~~ip~~vf 350 (464)
T PRK05976 280 GLENTDLD-----VEGGFI---RIDDFCQT-SMRHIYAIGDVIGEPMLAHRAMAQGEMVAEHIAGKKREPIDYAIVAVCF 350 (464)
T ss_pred CCCCCCEE-----ECCCCE---ECCCCCCC-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 73227766-----217836---24676535-8871999605689877732899999999998659997433455660302
Q ss_pred C-CCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf 5-321079999998860787740244
Q gi|254780808|r 402 S-RTDSYIGVMIDDLTSKGVLEPYRM 426 (626)
Q Consensus 402 ~-R~eaYiGVlIDDLitkg~~EPYRM 426 (626)
. =.-|++|.--+++..+|. +|+.
T Consensus 351 t~PeiA~VGlte~~a~~~g~--~~~~ 374 (464)
T PRK05976 351 TDPEVVSVGLTPDEAKEAGY--DVKV 374 (464)
T ss_pred CCCCEEEEECCHHHHHHCCC--CEEE
T ss_conf 37536886488999987699--8899
No 180
>PRK12831 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.00027 Score=50.07 Aligned_cols=75 Identities=25% Similarity=0.224 Sum_probs=52.2
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEE-ECCCHHHHHHHHH
Q ss_conf 454347766689889999998754340010011000121102354565677654033415662133-0433466666677
Q gi|254780808|r 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI-NGTTGYEEAAAQG 382 (626)
Q Consensus 304 ~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI-~GteGYeEAAAqG 382 (626)
.+-=+|+.....+ +...+|+ ++-+.|+-+- -+.+++| .+||+|.||-+ +|-+-=++|.++|
T Consensus 388 Vi~AiGq~~~~~~------~~~~~gi---~~~~~g~i~~--------~~~~~~T-s~~gVFa~GD~~~G~~~vV~Ai~~G 449 (464)
T PRK12831 388 VIMSLGTSPNPLI------SSTTPGL---EINKRGCIVA--------DEETGLT-SIEGVYAGGDAVTGAATVILAMGAG 449 (464)
T ss_pred EEECCCCCCCCCC------CCCCCCE---EECCCCCEEE--------CCCCCCC-CCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 9999868987430------0136680---2779998884--------7899842-8999998278676833999999999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 89999987420334
Q gi|254780808|r 383 LVAGINSARKSNKL 396 (626)
Q Consensus 383 l~AGiNa~~~~~~~ 396 (626)
-.|+.....+++|+
T Consensus 450 r~AA~~I~~yL~gk 463 (464)
T PRK12831 450 KKAAKAIDEYLSKK 463 (464)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999997359
No 181
>PRK06753 hypothetical protein; Provisional
Probab=97.50 E-value=3.3e-05 Score=56.56 Aligned_cols=139 Identities=17% Similarity=0.249 Sum_probs=71.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HH---
Q ss_conf 889889426899999998589989999807626012466700221122489999986303999999886314---88---
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ---FR--- 81 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~---~r--- 81 (626)
|+|||||.||+=+|+.|++.|++|.++|.+++-- +....=+++ ..-.+-++.+| +.-.+.. .+.+ +.
T Consensus 3 V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~-~~g~gi~l~----~~~l~~L~~~g-l~~~l~~-~~~~~~~~~~~~ 75 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVT-EIGAGIGIG----DNVLKKLGNHD-LAKGIKN-AGQILSTMNVLD 75 (373)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCEEEEEC----HHHHHHHHHCC-CHHHHHH-HCCCCCEEEEEE
T ss_conf 9999945899999999997799999988899988-776199988----99999999879-8489996-077873299990
Q ss_pred ----HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf ----7307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r 82 ----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 82 ----~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf 157 (626)
.++..+.+.. .+...+.|..+.+...+.+... .| ....+|+++..+++. +.+...+|....+..||-|-|-.
T Consensus 76 ~~g~~~~~~~~~~~-~~~~~i~R~~L~~~L~~~~~~~-~i-~~~~~~~~i~~~~~~-v~v~~~dg~~~~~DlvVGADG~~ 151 (373)
T PRK06753 76 DKGTLLTKVKLKSN-TLNVTLPRQTLIDIIKSYVKED-TI-FTNHEVTKIENETDK-VTIHFAEQESEAFDLCIGADGIH 151 (373)
T ss_pred CCCCEEEEEECCCC-CCEEEECHHHHHHHHHHHCCCC-EE-EECCEEEEEEEECCE-EEEEECCCCEEEEEEEEECCCCC
T ss_conf 99989676204778-8348980999999998747458-79-958899999930998-99998799798887999748877
No 182
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.50 E-value=0.0007 Score=47.08 Aligned_cols=96 Identities=22% Similarity=0.390 Sum_probs=65.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
.|+|||||.-|+|+|..++++|.+|.++++.+.-+. +.
T Consensus 151 ~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~-----------------~~------------------------- 188 (443)
T PRK09564 151 RIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILP-----------------DS------------------------- 188 (443)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-----------------CC-------------------------
T ss_conf 599999709999999999866988999995783455-----------------66-------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 7855534678784999999999999708996898001-011202588113222035863344543334664310
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
.|.+ .++.+++.++.+ +|++.-++ |+++ ..++.+..+.+.. ..+.+..|++++|---+
T Consensus 189 -----------~d~~-~~~~~~~~l~~~-gv~i~~~~~v~~i-~~~~~~~~v~~~~-~~i~~D~vi~a~G~~Pn 247 (443)
T PRK09564 189 -----------FDKE-ITDVMEEELREK-GVELHTSEFVKSL-IGEDKVEGVVTNK-GEYEADVVILSTGIKPN 247 (443)
T ss_pred -----------CCHH-HHHHHHHHHHHC-CCEEEECCEEEEE-EECCCEEEEEECC-CEEEEEEEEECCCCCCC
T ss_conf -----------7899-999999999977-9799989989999-9269899999779-88972389995588535
No 183
>PRK08244 hypothetical protein; Provisional
Probab=97.47 E-value=0.00018 Score=51.22 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=33.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 357889889426899999998589989999807626
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
++||+|||||.+|.=+|+.||+.|++|.++|.+++.
T Consensus 2 ~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~ 37 (494)
T PRK08244 2 KTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEP 37 (494)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 989999994789999999999779999999089998
No 184
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.46 E-value=0.00089 Score=46.34 Aligned_cols=95 Identities=25% Similarity=0.348 Sum_probs=53.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
+|.|||||-+|+|+|.+++++|++|.|++..+.-.+.+.=
T Consensus 138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~---------------------------------------- 177 (415)
T COG0446 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD---------------------------------------- 177 (415)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----------------------------------------
T ss_conf 3999893499999999998779938999756642331121----------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEE--EEECCCCCCCCCCCCCCCCC
Q ss_conf 785553467878499999999999970899689-80010112025881132--22035863344543334664
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~--v~~~~g~~~~~~~viiatGt 156 (626)
..++..+++.++.+. |++ ....+.++....+.... +.+..+..+.+..+++++|-
T Consensus 178 --------------~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 178 --------------PEVAEELAELLEKYG-VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred --------------HHHHHHHHHHHHHCC-CEEECCCEEEEEEECCCCEEEEEEEEEEEEEECCCEEEECCCC
T ss_conf --------------889999999999729-4898265269999258621554456653035223369878975
No 185
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.45 E-value=0.00099 Score=46.03 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=27.1
Q ss_pred HHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHH
Q ss_conf 6776540334156621330433466-666677899999874
Q gi|254780808|r 352 FPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSAR 391 (626)
Q Consensus 352 ~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~ 391 (626)
+..++| .+||+|.||-+||.--.. -|..||.+|+-|+.-
T Consensus 298 d~~~rT-s~~~IyA~GDv~g~~~l~h~A~~qg~ia~~n~~g 337 (467)
T PRK07845 298 DRVSRT-SVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG 337 (467)
T ss_pred CCCCCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 987665-8770999704578867655899999999999707
No 186
>KOG2404 consensus
Probab=97.44 E-value=0.00076 Score=46.86 Aligned_cols=141 Identities=23% Similarity=0.272 Sum_probs=84.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC--------------------------CCCCCCCCCCCCCHHHHHH
Q ss_conf 78898894268999999985899899998076260--------------------------1246670022112248999
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI--------------------------GSMSCNPAIGGLGKGHLVR 60 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~--------------------------ael~Cnps~gg~akg~L~~ 60 (626)
.|+|||+||||--|+.-+-..|-.|.|++-....= -||--+-++ ..|||-=+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl-~saksk~~~ 89 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTL-SSAKSKGVP 89 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHH-HHCCCCCCH
T ss_conf 0799877403235677787448759998246776775201025767776145653165667677764024-320347868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------C-----------CCCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99863039999998863148873-----------0-----------7878--5553467878499999999999970899
Q gi|254780808|r 61 EIDALDGLMGRVADAAGIQFRVL-----------N-----------VKKG--PAVRGPRTQADRELYRLAMQREILSQEN 116 (626)
Q Consensus 61 Ei~aLgg~m~~~aD~~~i~~r~l-----------n-----------~skG--pAv~alraqvDR~~fs~~vt~~l~~~pn 116 (626)
| +|.+.|..++.-.++| + ++-| |++.-+ ++ ..+....+.-+.+|+
T Consensus 90 e------Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei-~~----~L~~~l~k~as~~pe 158 (477)
T KOG2404 90 E------LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEI-VK----ALSTRLKKKASENPE 158 (477)
T ss_pred H------HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHH-HH----HHHHHHHHHHHCCHH
T ss_conf 9------999987368878999863306266899872587877534568999996089-99----999998876531807
Q ss_pred CE--EEHHHHCCCCCCCCCEEEEEECCC----CCCCCCCCCCCCCCCCH
Q ss_conf 68--980010112025881132220358----63344543334664310
Q gi|254780808|r 117 LD--VIQGEVAGFNTEKNIISSIVMQDN----SMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 117 i~--i~~~eV~~l~~~~~~~~~v~~~~g----~~~~~~~viiatGtfl~ 159 (626)
+- ..+.+|++|..+++.+.||.-.+. ..+...+||+|||-|--
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404 159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHCCEEEEEECCCCEEEEEEEECCCCCCCCEECCCEEEECCCCCC
T ss_conf 7732313624564427880777999757897250104736995277675
No 187
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.44 E-value=0.00087 Score=46.41 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHH
Q ss_conf 56776540334156621330433466-66667789999987
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSA 390 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~ 390 (626)
.|..||| .+||+|.||-++|-.-.. -|..||.+|+-|+.
T Consensus 295 VD~~~~T-s~p~IyA~GDv~g~~~lah~A~~qg~~aa~~i~ 334 (465)
T PRK05249 295 VNSNYQT-AVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV 334 (465)
T ss_pred ECCCCCC-CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 7979877-998707511257876772678999999999974
No 188
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.43 E-value=0.00018 Score=51.21 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=34.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHC
Q ss_conf 63578898894268999999985-899899998076260
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHKTSTI 41 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar-~G~~v~L~~~~~~~~ 41 (626)
.++||.|||||-+|--+|+.||| .|++|++++-+++..
T Consensus 31 ~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~~~~ 69 (634)
T PRK08294 31 DEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKPGRL 69 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 858889999658999999998713799889992799999
No 189
>PRK13984 putative oxidoreductase; Provisional
Probab=97.37 E-value=0.00047 Score=48.33 Aligned_cols=56 Identities=27% Similarity=0.352 Sum_probs=40.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf 889889426899999998589989999807626012466-700221122489999986
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-NPAIGGLGKGHLVREIDA 64 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-nps~gg~akg~L~~Ei~a 64 (626)
|-|||+|-||--||++||++|+.|..||..+.-=|.|.- =|.+. +-|..|-+|++.
T Consensus 286 VAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fR-Lpk~vv~rei~~ 342 (604)
T PRK13984 286 VAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYR-LPDEALDKDIAF 342 (604)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCC-CCHHHHHHHHHH
T ss_conf 999898689999999999869868997456778972331587222-878999999999
No 190
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=97.36 E-value=0.00025 Score=50.32 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=31.9
Q ss_pred CCCEEEECCCHHHHHHHH-HHHHCCCCEEEEECCH
Q ss_conf 357889889426899999-9985899899998076
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAA-VAAKLGASTALITHKT 38 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~-~~Ar~G~~v~L~~~~~ 38 (626)
.||-||||||+||+=.|- .||+.|-+|+++|-|-
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~ 35 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRN 35 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 95179986636779999999997099889997306
No 191
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=97.35 E-value=0.00025 Score=50.30 Aligned_cols=32 Identities=44% Similarity=0.609 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 78898894268999999985899899998076
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
.|||||||-||-=||.-||++|.+|.|+|..-
T Consensus 3 ~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~ 34 (499)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (499)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 06998187267899999985399679997401
No 192
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.32 E-value=0.00068 Score=47.20 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=70.6
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE-EECCCHHHHHHHH
Q ss_conf 645434776668988999999875434001001100012110235456567765403341566213-3043346666667
Q gi|254780808|r 303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ-INGTTGYEEAAAQ 381 (626)
Q Consensus 303 ~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ-I~GteGYeEAAAq 381 (626)
+.+-=+|.++.+++.+ -+||+ +.|.|. +.- || .+++| ..||+|.||- .+|-.=-++|.|+
T Consensus 428 ~VI~AIGQ~~d~~~~~-------~~gl~---~~~~G~-i~v---d~----~t~~T-s~~gVFAgGD~v~Gp~tvV~AIa~ 488 (652)
T PRK12814 428 TVISAIGQQVDPPIAE-------AAGIG---TSRNGT-VKV---DP----ETLQT-SVAGVFAGGDCVTGADIAINAVEQ 488 (652)
T ss_pred EEEECCCCCCCCCHHH-------CCCCC---CCCCCC-EEE---CC----CCCCC-CCCCEEECCCCCCCCHHHHHHHHH
T ss_conf 8998458788833222-------45863---668998-885---88----88743-999999898887684499999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 7899999874203345654653-210799999988607877402442000122121157871366888
Q gi|254780808|r 382 GLVAGINSARKSNKLDCICFSR-TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP 448 (626)
Q Consensus 382 Gl~AGiNa~~~~~~~~p~~l~R-~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~ 448 (626)
|=.|+.+..++++|+++...+. -.+..+.. |+ +.+.|.-=+ ....|..+.+=.+++|...
T Consensus 489 Gr~AA~~Id~yL~G~~~~~~~~~~~~~~~~~--~~----~p~~~~~~~-~~~~R~~~p~l~~~~R~~~ 549 (652)
T PRK12814 489 GKRAAHAIDLFLNGKPVTAPVQPFNSSYGPR--DK----APEAFYDRA-QPAPRVALPELPLEERTGG 549 (652)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH--HC----CCHHHHCCC-CCCCCCCCCCCCHHHHHCC
T ss_conf 9999999999858999777876542221122--03----745553145-6565455776899997069
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.31 E-value=0.001 Score=45.94 Aligned_cols=101 Identities=14% Similarity=0.264 Sum_probs=68.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
.|+|||||.=|||+|..+.++|++|.++++.+.-++. .++
T Consensus 146 ~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r-----~~~----------------------------------- 185 (400)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-----NAP----------------------------------- 185 (400)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----CCC-----------------------------------
T ss_conf 3999885589999999999759948999534634100-----269-----------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 78555346787849999999999997089968980010112025881132220358633445433346643101344
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~ 163 (626)
|. .+..+++.++.+ ++++.-+...+-..++. ...+.+.+|..+.|..||+++|.--+-.+.
T Consensus 186 --~~------------~~~~l~~~~~~~-GV~~~~~~~v~~~~~g~-~~~v~l~~G~~l~aD~VivaiGv~Pnt~la 246 (400)
T PRK09754 186 --PP------------VQRYLLQRHQQA-GVRILLNNAIEHVVDGE-KVELTLQSGETLQADVVIYGIGISANDQLA 246 (400)
T ss_pred --HH------------HHHHHHHHHHHC-CCEEEECCEEEEEECCC-EEEEEECCCCEEECCEEEECCCCCCCHHHH
T ss_conf --89------------999999999978-98999587589997897-799998689999858999897675375899
No 194
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=97.30 E-value=0.0018 Score=44.13 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=44.5
Q ss_pred HHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCC--CCC----C-CCC-CCCCCHHHHHHHHHHCCCCC
Q ss_conf 6776540334156621330433466-666677899999874203--345----6-546-53210799999988607877
Q gi|254780808|r 352 FPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSN--KLD----C-ICF-SRTDSYIGVMIDDLTSKGVL 421 (626)
Q Consensus 352 ~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~--~~~----p-~~l-~R~eaYiGVlIDDLitkg~~ 421 (626)
+..++| .+||+|.+|-+||--... .|..||.+|+-|+...-. ..+ | .++ .-.-|.+|.--+++..+|.+
T Consensus 287 d~~~~T-s~~~IyA~GDv~g~~~lah~A~~qg~ia~~~i~~~~~~~~~~~~~iP~~vft~Peia~vGlte~ea~~~g~~ 364 (453)
T PRK07846 287 DEYQRT-SARGVFALGDVSSPYQLKHVANHEARVVKHNLLHPDDLRASDHRYVPSAVFTHPQIASVGLTENEARAAGLD 364 (453)
T ss_pred CCCCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCC
T ss_conf 674464-787299987468876762289999999999972589973224676415998178679986999999876997
No 195
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=97.27 E-value=0.0007 Score=47.10 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=44.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE--CCHHHCCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 578898894268999999985899899998--07626012466-70022112248999998630
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSC-NPAIGGLGKGHLVREIDALD 66 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~--~~~~~~ael~C-nps~gg~akg~L~~Ei~aLg 66 (626)
+-|-|||+|-||--+|.-+||+|++|..|| |+|-.+ |.= =|-+. +-|..+.+||..|-
T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV--~~YGIPefR-LpKei~~~E~k~Lk 203 (462)
T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV--LAYGIPEFR-LPKEIVETEVKKLK 203 (462)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE--EEECCCCCC-CCHHHHHHHHHHHH
T ss_conf 77999846821468899997479869999714899856--753688854-87578898888763
No 196
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.26 E-value=0.0021 Score=43.65 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCHHHHHHHHHHCCCC
Q ss_conf 56776540334156621330433466-666677899999874203345654653------21079999998860787
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSNKLDCICFSR------TDSYIGVMIDDLTSKGV 420 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~~~~p~~l~R------~eaYiGVlIDDLitkg~ 420 (626)
.+..||| .+||+|.+|-++|---.. .|..||.+|+-|+.-.-...+.-.+|+ .-|++|.--+++..+|.
T Consensus 289 Vd~~~~T-s~p~IyA~GDv~g~~~l~h~A~~~g~~aa~~~~g~~~~~~~~~vP~~ift~Peia~vGlte~~a~~~~~ 364 (458)
T PRK06912 289 VNEHMQT-NVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG 364 (458)
T ss_pred CCCCCCC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCC
T ss_conf 4666676-876499962378987773289999999999757998631246673599826665998588999987599
No 197
>PRK07190 hypothetical protein; Provisional
Probab=97.26 E-value=0.00055 Score=47.84 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=37.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 98763578898894268999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|..+..||+|||||-.|.-+|..||+.|++|.++|-++...
T Consensus 1 m~~~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~ 41 (480)
T PRK07190 1 MSAQVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPL 41 (480)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99886448999938899999999988799999996999999
No 198
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.26 E-value=0.00031 Score=49.62 Aligned_cols=33 Identities=36% Similarity=0.501 Sum_probs=30.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 578898894268999999985899899998076
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
||+||||-|--|-=+|-|||-.|+||+.+|...
T Consensus 1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~ 33 (506)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYL 33 (506)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 947898168317899999985462255322011
No 199
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.21 E-value=0.0011 Score=45.74 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=39.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 88988942689999999858998999980762601246-6700221122489999986
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA 64 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~a 64 (626)
|-|||+|-||--||++|||+|+.|+.||..+.-=|.|. .=|.+.- -|..+.+|++.
T Consensus 540 VAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRL-PkevI~reI~~ 596 (1012)
T TIGR03315 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRI-SAESIQKDIEL 596 (1012)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCC-CHHHHHHHHHH
T ss_conf 9998977899999999997799569981589788547855887778-99999999999
No 200
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.21 E-value=0.0022 Score=43.55 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCC--CCC----CCC-C-CCCCCHHHHHHHHHHCCCCC
Q ss_conf 56776540334156621330433466-666677899999874203--345----654-6-53210799999988607877
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSN--KLD----CIC-F-SRTDSYIGVMIDDLTSKGVL 421 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~--~~~----p~~-l-~R~eaYiGVlIDDLitkg~~ 421 (626)
.+..++| .+|++|.+|-++|.--.. -|.+||.+|+-|+...-. ..+ |.+ + .-.-|.+|.--+++..+|.+
T Consensus 287 vd~~~~T-s~~~IyA~GDv~g~~~Lah~A~~eg~~a~~ni~~~~~~~~~~~~~iP~~vft~PeiA~vGlte~ea~~~g~~ 365 (452)
T TIGR03452 287 VDEYGRT-SARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHD 365 (452)
T ss_pred CCCCCCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCCC
T ss_conf 2876786-897399974068875770089999999999970789974125776514998257679985899999975997
No 201
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.18 E-value=0.0012 Score=45.38 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=39.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 88988942689999999858998999980762601246-6700221122489999986
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA 64 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~a 64 (626)
|-|||+|-||--||++|||+|+.|+.||..+.-=|.|. .=|.+. +-|-.+.+|++.
T Consensus 553 VAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fR-LPk~vIdreI~~ 609 (1032)
T PRK09853 553 VAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFR-IPAELIQHDIDF 609 (1032)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC-CCHHHHHHHHHH
T ss_conf 999896889999999999779936998158978842673588767-899999999999
No 202
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.16 E-value=0.0013 Score=45.24 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=40.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 788988942689999999858998999980762601246-6700221122489999986
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA 64 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~a 64 (626)
-|-|||+|-||-=||++||++|++|..||..+.-=|.|. .=|.+. +-|..+.+|++.
T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fR-LPK~vv~rei~~ 369 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFK-LDKTVLSQRREI 369 (639)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC-CCHHHHHHHHHH
T ss_conf 8999897589999999999759906999368888986853587452-777899999999
No 203
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.12 E-value=0.0013 Score=45.10 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=51.8
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE-EECCCHHHHHHHHH
Q ss_conf 45434776668988999999875434001001100012110235456567765403341566213-30433466666677
Q gi|254780808|r 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ-INGTTGYEEAAAQG 382 (626)
Q Consensus 304 ~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ-I~GteGYeEAAAqG 382 (626)
.+-=+|++... .++.++|||+ +-|.|+ +.- |+ .+ ....|++|.+|- ++|-.=-++|.++|
T Consensus 686 VI~AIGq~~~~------~~~~~~~gl~---~~~~G~-i~v---d~-----~~-~Ts~~gVFAgGD~v~G~~tVV~Ai~~G 746 (760)
T PRK12778 686 AIVSVGVSPNP------IVPSSIPGLE---LGRKGT-IAV---DD-----NM-QSSIPGIYAGGDIVRGGATVILAMGDG 746 (760)
T ss_pred EEECCCCCCCC------CCCCCCCCEE---ECCCCC-EEE---CC-----CC-CCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 99998689886------5211366725---779997-883---98-----96-348989998678676805999999999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 89999987420334
Q gi|254780808|r 383 LVAGINSARKSNKL 396 (626)
Q Consensus 383 l~AGiNa~~~~~~~ 396 (626)
--|+.+...+++++
T Consensus 747 r~AA~~Id~yL~~k 760 (760)
T PRK12778 747 RRAAAAMNEQLSSK 760 (760)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999997459
No 204
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.12 E-value=0.0013 Score=45.18 Aligned_cols=57 Identities=28% Similarity=0.424 Sum_probs=41.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 889889426899999998589989999807626012466-7002211224899999863
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-NPAIGGLGKGHLVREIDAL 65 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-nps~gg~akg~L~~Ei~aL 65 (626)
|-|||+|-||--||++||++|+.|.+||..+.-=|.|.= =|.+. +-|..+.+|++.|
T Consensus 330 VAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fR-Lpk~vv~~ei~~l 387 (654)
T PRK12769 330 VAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFK-LDKSLLARRREIF 387 (654)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCC-CCHHHHHHHHHHH
T ss_conf 999897789999999999769757995257778866752486222-7789999999999
No 205
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.07 E-value=0.0033 Score=42.29 Aligned_cols=70 Identities=27% Similarity=0.480 Sum_probs=46.2
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCH-HHHHHHHHHHHHHHHHHHCCC-CC----C-CCCC-CCCCHHHHHHHHHHCCCCC
Q ss_conf 567765403341566213304334-666666778999998742033-45----6-5465-3210799999988607877
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTG-YEEAAAQGLVAGINSARKSNK-LD----C-ICFS-RTDSYIGVMIDDLTSKGVL 421 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteG-YeEAAAqGl~AGiNa~~~~~~-~~----p-~~l~-R~eaYiGVlIDDLitkg~~ 421 (626)
.|..+|| .+||+|-||-+||--- ---|..||.+|+-|+.-.-.. .+ | .++. =.-|++|.--+++..+|.+
T Consensus 290 VD~~~~T-s~p~IyA~GDv~g~~~la~~A~~qg~~a~~~i~~~~~~~~~~~~iP~~vft~Peia~VGlte~ea~~~g~~ 367 (460)
T PRK06292 290 VDPHTQT-NVPGIYAAGDVNGGPPLLHEAADEGIIAAENAAYPQVGPVDYRVIPSVVFTDPQIASVGKTEEELKAAGID 367 (460)
T ss_pred CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCC
T ss_conf 4887302-88735874035788776789999999999997279984420035523786365279876889999876997
No 206
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=97.05 E-value=0.00057 Score=47.75 Aligned_cols=139 Identities=24% Similarity=0.308 Sum_probs=76.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCC-----CCCC------------------CCC--C-------
Q ss_conf 8898894268999999985899899998076-26012466-----7002------------------211--2-------
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSC-----NPAI------------------GGL--G------- 54 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~C-----nps~------------------gg~--a------- 54 (626)
|||||+||||.-||..+|..|+.|.+|+..+ -+=|.=+| |-|. ||. +
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v~r 80 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNVKR 80 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHHHH
T ss_conf 96855653478999999864885125440588762000000266200256567888416653140323533677752789
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-------------HHHHHHHCCCCC
Q ss_conf ----248999998630399999988631488730787855534678784999999-------------999999708996
Q gi|254780808|r 55 ----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-------------AMQREILSQENL 117 (626)
Q Consensus 55 ----kg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~-------------~vt~~l~~~pni 117 (626)
.-.++.-|+|+|-...|-..- .+- +||=| | +||-|-.|++ .|+..+..= .|
T Consensus 81 la~~s~~iId~~~a~GvpFaRe~gG-lLd----~RsFG--G----~qvsRT~Yarg~TGQQLl~~~~~a~~r~~~~G-~v 148 (620)
T TIGR01811 81 LAEISPEIIDLMDAMGVPFAREYGG-LLD----TRSFG--G----VQVSRTFYARGQTGQQLLLAADSALRRQIAAG-TV 148 (620)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC-CCC----CCCCC--C----EEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC-CE
T ss_conf 9873089999986458843455466-300----13468--6----00012134177627899999999998888627-35
Q ss_pred EEE-HHHHCCCCCCCC----CEEE-----EEECCCCCCCCCCCCCCCCCCC
Q ss_conf 898-001011202588----1132-----2203586334454333466431
Q gi|254780808|r 118 DVI-QGEVAGFNTEKN----IISS-----IVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 118 ~i~-~~eV~~l~~~~~----~~~~-----v~~~~g~~~~~~~viiatGtfl 158 (626)
++. +.|+.+++..+. +..| ..|..-..+.+.+||+|||-.-
T Consensus 149 ~~y~~~e~ld~iv~d~~gek~arGi~arnL~Tge~~~~~adAVilAtGGyg 199 (620)
T TIGR01811 149 EKYERWEMLDIIVVDGDGEKRARGIIARNLVTGEIETFSADAVILATGGYG 199 (620)
T ss_pred EEEECCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCH
T ss_conf 664165168898875887502200121024000000003566898128860
No 207
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.04 E-value=0.0034 Score=42.19 Aligned_cols=104 Identities=22% Similarity=0.382 Sum_probs=66.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk 87 (626)
=.||||||=|-|||-+|-++|+.|-.++|-|-- +.+-||+.||...+
T Consensus 150 GaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L-----------------M~~QLD~~aG~lL~---------------- 196 (813)
T TIGR02374 150 GAVIGGGLLGLEAARALKNLGMDVSVIELAPFL-----------------MAKQLDQTAGRLLQ---------------- 196 (813)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH-----------------HHHHHHHHHHHHHH----------------
T ss_conf 558867415889999998779706446764898-----------------99999999999999----------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 855534678784999999999999-708996898001011202588113222035863344543334664310134
Q gi|254780808|r 88 GPAVRGPRTQADRELYRLAMQREI-LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI 162 (626)
Q Consensus 88 GpAv~alraqvDR~~fs~~vt~~l-~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~ 162 (626)
|++=+.-||=.+ ....-++++++. +.....++...||+.+.+.-||.|+|--=+..+
T Consensus 197 ------------~~le~~G~~~l~Gt~k~t~eiv~~~------d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~~L 254 (813)
T TIGR02374 197 ------------RELEKKGLTVLLGTEKDTVEIVGED------DVEKVERLRFKDGSSLEADLVVFAAGIRPRDEL 254 (813)
T ss_pred ------------HHHHHCCCEEEECCCCCEEEEEECC------CHHHHCEEECCCCCEEEECEEEEECCCCCCHHH
T ss_conf ------------9998579579861761105764156------401231224238978870379995156663689
No 208
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.03 E-value=0.0009 Score=46.32 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=94.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-CC----------CCCCCCCCCC--CCHHHHHHHHHHHHHH-
Q ss_conf 76357889889426899999998589989999807626-01----------2466700221--1224899999863039-
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IG----------SMSCNPAIGG--LGKGHLVREIDALDGL- 68 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-~a----------el~Cnps~gg--~akg~L~~Ei~aLgg~- 68 (626)
...+|||||||||||.-||.-+|.+|.+|+++.+..+. +| -||-||--.- +--+|-..--|=+|+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCEEEECCHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 66442799875279889999887267659997055545656513431263788468788221552047788775430124
Q ss_pred -------HHHHHHHHHHHHH------HHC-------------------------C--------CCCCCCCCHHHHHHHHH
Q ss_conf -------9999988631488------730-------------------------7--------87855534678784999
Q gi|254780808|r 69 -------MGRVADAAGIQFR------VLN-------------------------V--------KKGPAVRGPRTQADREL 102 (626)
Q Consensus 69 -------m~~~aD~~~i~~r------~ln-------------------------~--------skGpAv~alraqvDR~~ 102 (626)
-.+-=.++.++|- +|- + ..||+|-+ -
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~--------p 154 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLE--------P 154 (552)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEECCCCCHHH--------H
T ss_conf 68840005378999987664153157899728714310120420776667888877635876168864365--------9
Q ss_pred HHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEE------------------ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999970899689-8001011202588113222------------------0358633445433346643101344
Q gi|254780808|r 103 YRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIV------------------MQDNSMIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 103 fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~------------------~~~g~~~~~~~viiatGtfl~g~~~ 163 (626)
|-+.+++.-.. +.|+. .+-.|..|...++.+.||. ..-..++.+.+||+|+|-. .|.--
T Consensus 155 Fvr~~re~~~~-~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGI-GGnhe 232 (552)
T COG3573 155 FVRRLREAQRR-GRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGI-GGNHE 232 (552)
T ss_pred HHHHHHHHHHC-CCEEEEEEEECCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEECCCC-CCCHH
T ss_conf 99999998757-83389854011526853876761003321788445689764301032577620599945876-88888
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH
Q ss_conf 432023322247511133100001011200544445441011000013443
Q gi|254780808|r 164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT 214 (626)
Q Consensus 164 ~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~ 214 (626)
.-...++--|++-++ .++-+|.|.-+|++-|.-..+
T Consensus 233 lVRrnWP~eRlG~~P---------------e~m~~GVPaHVDGrmi~i~~~ 268 (552)
T COG3573 233 LVRRNWPTERLGRAP---------------EQMLSGVPAHVDGRMIGIAVA 268 (552)
T ss_pred HHHHCCCHHHCCCCH---------------HHHHCCCCCCCCCHHHHHHHH
T ss_conf 887529565508975---------------887628860136226778887
No 209
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.0053 Score=40.85 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=83.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 578898894268999999985899---8999980762601246670022112248999998630399999988631----
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGA---STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI---- 78 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~---~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i---- 78 (626)
++|.|||||-+|...|+.|.+.=- .+.++|.+++-=.-+.-++.- .-| .+++.+.+.+.-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~----p~~---------~lNv~a~~mS~~~pD~ 68 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE----PEH---------LLNVPAARMSAFAPDI 68 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC----CHH---------HHCCCCCCCCCCCCCC
T ss_conf 518997886579999999984788777567853555457875578888----214---------4216202354458998
Q ss_pred ---HHHHHCCC----C-----CCCCCCHHHHHHHHHHHHHHHHHHHCC----C--CCEEEHHHHCCCCCC-CCCEEEEEE
Q ss_conf ---48873078----7-----855534678784999999999999708----9--968980010112025-881132220
Q gi|254780808|r 79 ---QFRVLNVK----K-----GPAVRGPRTQADRELYRLAMQREILSQ----E--NLDVIQGEVAGFNTE-KNIISSIVM 139 (626)
Q Consensus 79 ---~~r~ln~s----k-----GpAv~alraqvDR~~fs~~vt~~l~~~----p--ni~i~~~eV~~l~~~-~~~~~~v~~ 139 (626)
-.|+|+.. . +.=+++. .-|.+|..++.+.+..- + ++..++++++++..+ +.....+.+
T Consensus 69 p~~F~~WL~~~~~~~~d~~~~~~d~~~y---~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~ 145 (474)
T COG4529 69 PQDFVRWLQKQLQRYRDPEDINHDGQAY---PPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTT 145 (474)
T ss_pred CHHHHHHHHHCCCCCCCHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEEC
T ss_conf 1689999974255657754437765346---6156999999999999997367640467764443010045773578965
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 35863344543334664
Q gi|254780808|r 140 QDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 140 ~~g~~~~~~~viiatGt 156 (626)
.+|....+..+|++||-
T Consensus 146 ~~g~~~~ad~~Vlatgh 162 (474)
T COG4529 146 ADGPSEIADIIVLATGH 162 (474)
T ss_pred CCCCEEEEEEEEEECCC
T ss_conf 88870450179994368
No 210
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=96.96 E-value=0.00097 Score=46.09 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=30.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 88988942689999999858998999980762
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
|+|||||.-|||.|..++++|++|.|+++.+.
T Consensus 2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~ 33 (82)
T pfam00070 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDR 33 (82)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999889999999999863927899812573
No 211
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=96.94 E-value=0.00095 Score=46.17 Aligned_cols=112 Identities=23% Similarity=0.326 Sum_probs=74.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH----------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 357889889426899999998589--98999980762----------601246670022112248999998630399999
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTS----------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV 72 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~----------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~ 72 (626)
.-||||+|||-.|-=||+.+||.| .||.++|-++. .|-.+|- --+|+ .+.+|
T Consensus 21 e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~Vv----~~pA~-~~L~e----------- 84 (283)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIVV----EKPAK-EILDE----------- 84 (283)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEE----ECHHH-HHHHH-----------
T ss_conf 106679878974668999998429980699985110268986642224561365----14046-88886-----------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCC------CEEEEEECCCC
Q ss_conf 988631488730787855534678784999999999999708996898001-011202588------11322203586
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKN------IISSIVMQDNS 143 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~------~~~~v~~~~g~ 143 (626)
-+| |.-...-|--| .|-..|-..+-.+.-.-||+.|+... |.||...+. .|.||.+.+..
T Consensus 85 ---~gI--~~~d~~dg~~V------ads~e~~s~l~s~a~~aGn~Ki~~~~~vEDl~~R~~~ekGe~gv~Gvv~nw~L 151 (283)
T TIGR00292 85 ---FGI--RYEDEGDGYVV------ADSAEFISTLASKALQAGNAKIFNGVSVEDLILRDDTEKGEVGVAGVVINWSL 151 (283)
T ss_pred ---CCC--CEEECCCCEEE------EHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEE
T ss_conf ---598--13356885487------23676899999998658873143336888778768898651357789870042
No 212
>KOG0042 consensus
Probab=96.91 E-value=0.00037 Score=49.10 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=32.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 76357889889426899999998589989999807
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
..+|||.|||||-.|+-+|+-++-||.+|.|+|-.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~ 99 (680)
T KOG0042 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAG 99 (680)
T ss_pred CCCCCEEEECCCCCCCCEEEHHHCCCCEEEEEECC
T ss_conf 77553799888866754121201145214777426
No 213
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=96.87 E-value=0.0013 Score=45.11 Aligned_cols=152 Identities=24% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-C-CCCCC-CCHHH---HHHHHHHHHH--HHHHHH
Q ss_conf 876357889889426899999998589989999807626012466-7-00221-12248---9999986303--999999
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-N-PAIGG-LGKGH---LVREIDALDG--LMGRVA 73 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-n-ps~gg-~akg~---L~~Ei~aLgg--~m~~~a 73 (626)
||-.-||.|||||=||-=||.++|+-|++|.|+.-++.-=|-|-- + -.|.| +|.-= =++||.+++- +|.|.|
T Consensus 173 ~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT 252 (1026)
T TIGR01372 173 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTT 252 (1026)
T ss_pred EEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 42320478878896799999999647988999706765777556778760178018999999999974189816743540
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 88631488730787855534678784999999999999708996898001011202588113222035863344543334
Q gi|254780808|r 74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT 153 (626)
Q Consensus 74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viia 153 (626)
+++- -.|--+.++|.--..|+.... +++=.--=.+.|+.||||
T Consensus 253 -----------------~~G~-----------------YD~N~~g~~ER~~DHL~~P~~---g~~ReRlWrvRAkrvVLA 295 (1026)
T TIGR01372 253 -----------------AFGY-----------------YDHNTVGALERVTDHLDAPAK---GVPRERLWRVRAKRVVLA 295 (1026)
T ss_pred -----------------EEEE-----------------ECCCEEEEEEEHHCCCCCCCC---CCCCCEEEEECCCEEEEC
T ss_conf -----------------5545-----------------147747876201136677887---485330577725345660
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 664310134443202332224751113310000101120054
Q gi|254780808|r 154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR 195 (626)
Q Consensus 154 tGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r 195 (626)
||-+=+.+.+-+.. +-|-.-+.+...-+.+++..-|+
T Consensus 296 ~GA~ERPlVF~nND-----~PGvMlA~A~~~YlnRygV~pG~ 332 (1026)
T TIGR01372 296 TGALERPLVFANND-----RPGVMLAGAARTYLNRYGVAPGK 332 (1026)
T ss_pred CCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57644778688319-----53233367999988875005487
No 214
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=96.86 E-value=0.0012 Score=45.32 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHH--CCCCCEEEHHHHCCCCCCC-------CCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999999997--0899689800101120258-------8113222035863344543334664
Q gi|254780808|r 104 RLAMQREIL--SQENLDVIQGEVAGFNTEK-------NIISSIVMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 104 s~~vt~~l~--~~pni~i~~~eV~~l~~~~-------~~~~~v~~~~g~~~~~~~viiatGt 156 (626)
.++|.+..+ ..-.-.-...+|.+|.... +++.+|.+..+..+.|.+||.+..-
T Consensus 230 ~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ad~VvSnAD~ 291 (526)
T TIGR02734 230 VAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVATGGRATAVHLADGERLDADAVVSNADL 291 (526)
T ss_pred HHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEECCEEEEEECCCCEEEEEEEEEECCCH
T ss_conf 99999999746874699745531144621674233165243455065403311278874875
No 215
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.83 E-value=0.0021 Score=43.73 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 578898894268999999985899899998076
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
.+|+|||||-+|.-+|..||+.|++|.++|.++
T Consensus 3 t~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 889999977999999999997799889997689
No 216
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=96.82 E-value=0.0013 Score=45.28 Aligned_cols=369 Identities=18% Similarity=0.167 Sum_probs=175.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-----------C---------------------CCCCCCCCCCCC
Q ss_conf 57889889426899999998589989999807626-----------0---------------------124667002211
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----------I---------------------GSMSCNPAIGGL 53 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-----------~---------------------ael~Cnps~gg~ 53 (626)
-||.|||||+||-=||..++|.|+.|+|+|-=|-. | .+|. +--||.
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNarHgRN~R~~hd~p~d~~~D~YpaEEf~~dL~--~vtgg~ 79 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNARHGRNLRVAHDIPLDFLRDAYPAEEFRRDLL--KVTGGR 79 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH--HHCCCC
T ss_conf 237887642588999999863796798402478532578653334511101578886457873789998754--312787
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHCC---CCCEEE-HHHHC
Q ss_conf 224899999863039999998863148873078785553467878499999----9999999708---996898-00101
Q gi|254780808|r 54 GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR----LAMQREILSQ---ENLDVI-QGEVA 125 (626)
Q Consensus 54 akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs----~~vt~~l~~~---pni~i~-~~eV~ 125 (626)
--.+|-+=+=.=+|-+....-..+||+.= ++-+-|-. .=|..|- ++|++.+.+. =.|+|. .-+|.
T Consensus 80 t~~~l~~L~i~r~s~~~~w~~~~GVhl~P------~~aG~lpy-sRrtaF~~GGGkAl~NAly~sAerLGv~Iry~~~V~ 152 (467)
T TIGR02485 80 TDERLARLLIERASSILRWLIAHGVHLQP------AAAGVLPY-SRRTAFLLGGGKALVNALYASAERLGVEIRYDAEVE 152 (467)
T ss_pred CCHHHHHHHHHHCCHHHHHHHHCCCEECC------CCCCCCCH-HHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCC
T ss_conf 41157899887200236899967943366------32565760-111112357618999999998855572541477300
Q ss_pred CCCC--CCCCEEEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-------------CCCCHHH-
Q ss_conf 1202--5881132220--35863344543334664310134443202332224751113-------------3100001-
Q gi|254780808|r 126 GFNT--EKNIISSIVM--QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN-------------SLFNSFM- 187 (626)
Q Consensus 126 ~l~~--~~~~~~~v~~--~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~-------------~ls~~l~- 187 (626)
.|+. ++....++.+ ..+..|.++++|||+|-|=+..-|.-...=+..+ +|-+++ -|..-+.
T Consensus 153 ri~~~~~g~~~i~~~~v~~~~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~-geWPadn~~~RGTpy~~G~LL~~ll~d 231 (467)
T TIGR02485 153 RIEREEDGRAFIAARLVAAADERIATKAVVLAAGGLGANREWLRKAFGSRAE-GEWPADNFLVRGTPYAKGRLLKLLLDD 231 (467)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCC-CCCCHHCEEECCCCHHCCHHHHHHHHH
T ss_conf 0264567862012146622688122468888617888897999983688757-788511001258802102689999854
Q ss_pred HHHHHCCC---------------CCCCCCCHHHHCHH----HHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01120054---------------44454410110000----134--4321147876687774356578000000001232
Q gi|254780808|r 188 KFDFDTGR---------------LKTGTPARLDGKTI----IWD--KTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246 (626)
Q Consensus 188 ~~~~~~~r---------------~ktgtppri~~~si----df~--~~e~q~~d~~~~~~s~~~~~~~~~q~~~~~~~t~ 246 (626)
.=+-..|. |+-|++-||+.=+. |-+ .+...-.+..|.-+|.|-... -+.|--..|..
T Consensus 232 ~Ga~aiGdPt~~HvVavDaRaP~~DgGIvtRid~~~lG~VV~r~G~Rf~deGa~~~P~rya~Wgr~~--a~~Pgq~ay~l 309 (467)
T TIGR02485 232 EGADAIGDPTDAHVVAVDARAPLYDGGIVTRIDSVSLGVVVDRDGERFADEGADSQPKRYAVWGRRV--ADRPGQLAYLL 309 (467)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECEEECCEEECCCCCCHHHCCCCCCCCEEECHHHHH--HCCCCCEEEEE
T ss_conf 1643037798730676568888457835744121211317889776124136677884130013676--35898515324
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCEEEECCCCCCE-EEECCCCCCCCHHHH--
Q ss_conf 001477764024575414432356422255321----2335676433452013015787764-543477666898899--
Q gi|254780808|r 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE----DKIVRFGERNGHQIFLEPEGLNTDV-VYPNGISTALPEEIQ-- 319 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie----~k~~~~~~~p~h~VqLrpE~~~~~~-~n~vGFqTsL~~~~Q-- 319 (626)
-.+..+.+....-.|....+..+----.|---+ ..+.+|++-|+ +=|...-.++... --+|--.++--....
T Consensus 310 ld~~a~~r~~P~a~pp~~Adtl~eLA~~lgidp~~l~~tld~~naapr-vGqfdhttlddChteGvvPak~~~ar~i~v~ 388 (467)
T TIGR02485 310 LDAKALKRLAPSALPPVKADTLEELAAKLGIDPDALAETLDAYNAAPR-VGQFDHTTLDDCHTEGVVPAKATAARTIAVV 388 (467)
T ss_pred ECCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 320578635874569788888799999858888899986506787876-6655553100001356644423456565337
Q ss_pred -HHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEEC----------CCHHHHHHHHHHHHHHH
Q ss_conf -9999875434001001100012110235456567765403341566213304----------33466666677899999
Q gi|254780808|r 320 -HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING----------TTGYEEAAAQGLVAGIN 388 (626)
Q Consensus 320 -~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~G----------teGYeEAAAqGl~AGiN 388 (626)
.=-+-|+||+ -|++|| ++-|-+---.++. -+..++||.||.+=- =-|-.=||.=|-+||-.
T Consensus 389 Pf~aypm~PG~---tFt~yG--l~vDatarVr~nd---~~~~~~LFaAG~~MagnvLg~GYlaG~G~T~~AVFG~IAG~~ 460 (467)
T TIGR02485 389 PFYAYPMKPGV---TFTRYG--LKVDATARVRLND---ARASDDLFAAGEIMAGNVLGKGYLAGAGLTLAAVFGRIAGRE 460 (467)
T ss_pred CCCCCCCCCCC---CEEECC--EEECHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 73220356785---146505--0211224445425---889724788988999987310232211567778863567889
Q ss_pred HHHHCCC
Q ss_conf 8742033
Q gi|254780808|r 389 SARKSNK 395 (626)
Q Consensus 389 a~~~~~~ 395 (626)
|||.+.+
T Consensus 461 AAR~~~~ 467 (467)
T TIGR02485 461 AARLVRK 467 (467)
T ss_pred HHHCCCC
T ss_conf 8520589
No 217
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.81 E-value=0.0031 Score=42.53 Aligned_cols=44 Identities=32% Similarity=0.500 Sum_probs=35.8
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCC
Q ss_conf 889889426899999998589--989999807626012466700221
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGG 52 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg 52 (626)
|+|||||.||-=|||.|++.| +.+.|+|.. +++|=+.-+=..+|
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~-~r~GG~l~T~~~~G 48 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD-DRVGGLLRTVKIDG 48 (444)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCEEEEEEECC
T ss_conf 99987828889999999985899867998348-87786589983188
No 218
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0019 Score=44.03 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=32.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 63578898894268999999985899899998076
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+.-||||||||+||+=||+-+-|.|..|.++|-+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~ 40 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD 40 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88868998972688899998764681899986467
No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.78 E-value=0.015 Score=37.64 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=14.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 889889426899999998589989999807
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
++|||||--|+|=|...+++|++|.++++.
T Consensus 176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~ 205 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERG 205 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999898889999999999869978999468
No 220
>KOG4716 consensus
Probab=96.75 E-value=0.023 Score=36.35 Aligned_cols=326 Identities=17% Similarity=0.222 Sum_probs=150.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CHHHCC--C---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7635788988942689999999858998999980-762601--2---466700221122489999986303999999886
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIG--S---MSCNPAIGGLGKGHLVREIDALDGLMGRVADAA 76 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~-~~~~~a--e---l~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~ 76 (626)
..+||.||||||-+|--||--+|+.|.+|.++.. +|.-.| + =-|-| +|-+-| -|++.-.-|| .-..-+++
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvN-VGCIPK-KLMHQAallG-~al~da~k- 92 (503)
T KOG4716 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVN-VGCIPK-KLMHQAALLG-EALHDARK- 92 (503)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEE-CCCCCH-HHHHHHHHHH-HHHHHHHH-
T ss_conf 4774479986885136677998860870799961245788874555854665-365318-9888888777-88777886-
Q ss_pred HHHHHHHCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHCCC---CCEEEHHHHCCCC-----CCCCCEEEEE-ECCCCC
Q ss_conf 314887307878555346787---849999999999997089---9689800101120-----2588113222-035863
Q gi|254780808|r 77 GIQFRVLNVKKGPAVRGPRTQ---ADRELYRLAMQREILSQE---NLDVIQGEVAGFN-----TEKNIISSIV-MQDNSM 144 (626)
Q Consensus 77 ~i~~r~ln~skGpAv~alraq---vDR~~fs~~vt~~l~~~p---ni~i~~~eV~~l~-----~~~~~~~~v~-~~~g~~ 144 (626)
=||-.--| -|-+...+.|++.|.+-- .+.+.+..|+=+. .+...+.... ...-..
T Consensus 93 -------------yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~ 159 (503)
T KOG4716 93 -------------YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERF 159 (503)
T ss_pred -------------HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCCEEE
T ss_conf -------------2877762335546899999998776623525898731010135602145426625898547784578
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf 34454333466431013444320233222475111331000010112005444454410110000134432114787668
Q gi|254780808|r 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI 224 (626)
Q Consensus 145 ~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~ 224 (626)
+.|..++++||---+ ..+.-|....--.|+.+..+.+.-|+ .-.+-+.++..+.+-...+
T Consensus 160 ~ta~~fvIatG~RPr----------Yp~IpG~~Ey~ITSDDlFsl~~~PGk-----TLvVGa~YVaLECAgFL~g----- 219 (503)
T KOG4716 160 LTAENFVIATGLRPR----------YPDIPGAKEYGITSDDLFSLPYEPGK-----TLVVGAGYVALECAGFLKG----- 219 (503)
T ss_pred EECCEEEEEECCCCC----------CCCCCCCEEEEECCCCCCCCCCCCCC-----EEEECCCEEEEEHHHHHHH-----
T ss_conf 614538997268778----------99999842521123321055689994-----4897451345421356753-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 777435657800000000123200147776402457--54144323564222553-212335676433452013015787
Q gi|254780808|r 225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS--AIYSGDIKSYGPRYCPS-IEDKIVRFGERNGHQIFLEPEGLN 301 (626)
Q Consensus 225 ~~s~~~~~~~~~q~~~~~~~t~~~~~~~~~~~~~~~--~~~~g~~~~~gprycPs-ie~k~~~~~~~p~h~VqLrpE~~~ 301 (626)
|.|.-.- ....|....+++. -....-+...|-.+-.. +|..+.+-.++..
T Consensus 220 -fg~~vtV---------------mVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l----------- 272 (503)
T KOG4716 220 -FGYDVTV---------------MVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL----------- 272 (503)
T ss_pred -CCCCCEE---------------EEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCE-----------
T ss_conf -3888579---------------9987410252699999999999970973340335301022047727-----------
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHH--------HHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCC
Q ss_conf 7645434776668988999999875--------43400100110001211023545656776540334156621330433
Q gi|254780808|r 302 TDVVYPNGISTALPEEIQHQFIRTI--------PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT 373 (626)
Q Consensus 302 ~~~~n~vGFqTsL~~~~Q~rv~r~I--------PGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gte 373 (626)
...|.+-+.+.--.++-.-|+-.| -||+|| .|+.|--+-+.+-...|.-.+|++|.-|-| .+
T Consensus 273 -~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~-------GVk~n~ks~KI~v~~~e~t~vp~vyAvGDI--l~ 342 (503)
T KOG4716 273 -RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNA-------GVKTNEKSGKIPVDDEEATNVPYVYAVGDI--LE 342 (503)
T ss_pred -EEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCC-------CEEECCCCCCCCCCHHHHCCCCCEEEECCE--EC
T ss_conf -99961255664441022320312245110100388753-------325324478644576773578716885000--06
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 46666667789999987420334565465
Q gi|254780808|r 374 GYEEAAAQGLVAGINSARKSNKLDCICFS 402 (626)
Q Consensus 374 GYeEAAAqGl~AGiNa~~~~~~~~p~~l~ 402 (626)
|-.|-----+.||--.|+++-+-.....+
T Consensus 343 ~kpELTPvAIqsGrlLa~Rlf~gs~q~~d 371 (503)
T KOG4716 343 DKPELTPVAIQSGRLLARRLFAGSTQLMD 371 (503)
T ss_pred CCCCCCHHHHHHCHHHHHHHHCCCCEEEE
T ss_conf 98656525435356999987468615641
No 221
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0021 Score=43.78 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=29.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+|+|||+||--||+.||..|+.|.|+|-++
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8997462788899999986898539984267
No 222
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=96.74 E-value=0.0014 Score=45.06 Aligned_cols=34 Identities=44% Similarity=0.600 Sum_probs=32.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|-|||||-||+-||=+||+.|+.+.|+|-++|+.
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~a 36 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNA 36 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 8897489741689999985031046332056788
No 223
>KOG1399 consensus
Probab=96.65 E-value=0.0097 Score=38.99 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 987635788988942689999999858998999980762601246670022-------1122489999986303999999
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-------GLGKGHLVREIDALDGLMGRVA 73 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~g-------g~akg~L~~Ei~aLgg~m~~~a 73 (626)
||.+. |.|||||-||-=||-.|-+.|+.+..+|-..+==|-=...+... -.-+-++-+|+-.+ .
T Consensus 4 ~~~~~--vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~-------~ 74 (448)
T KOG1399 4 MMSKD--VAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGY-------S 74 (448)
T ss_pred CCCCC--EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCC-------C
T ss_conf 77785--48978566888999999877998369970587454586057656554324342104688444257-------9
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC--CEEEEEECCC----CCCCC
Q ss_conf 88631488730787855534678784999999999999708996898001011202588--1132220358----63344
Q gi|254780808|r 74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--IISSIVMQDN----SMIRC 147 (626)
Q Consensus 74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~--~~~~v~~~~g----~~~~~ 147 (626)
|-- -|.=-..+. -++..+-++.....+......-++-++..+-.+.. .-..|.+.+. .....
T Consensus 75 dfp-----------f~~~~~~~~-p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~if 142 (448)
T KOG1399 75 DFP-----------FPERDPRYF-PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIF 142 (448)
T ss_pred CCC-----------CCCCCCCCC-CCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 989-----------754571117-88889999999998735834626734657998405677416898148864058996
Q ss_pred CCCCCCCCCCC
Q ss_conf 54333466431
Q gi|254780808|r 148 STVVLTTGTFL 158 (626)
Q Consensus 148 ~~viiatGtfl 158 (626)
..|++|||.+.
T Consensus 143 d~VvVctGh~~ 153 (448)
T KOG1399 143 DAVVVCTGHYV 153 (448)
T ss_pred EEEEECCCCCC
T ss_conf 38999556768
No 224
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.63 E-value=0.003 Score=42.62 Aligned_cols=34 Identities=29% Similarity=0.629 Sum_probs=32.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 3578898894268999999985899899998076
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
.||.+|||+|++|+=-|-.+|+.|.+|+++|.|+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~ 34 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN 34 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9758998776268899999997598799996256
No 225
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.61 E-value=0.0088 Score=39.29 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
-+|||||+=|.|||..|-+.|..|..+.|-+
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 5897551141678878874797348987336
No 226
>PTZ00318 NADH dehydrogenase; Provisional
Probab=96.54 E-value=0.0087 Score=39.32 Aligned_cols=115 Identities=16% Similarity=0.244 Sum_probs=67.8
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
|+.++ |+|||||-||..+|..+.+..+.|.|+..+.-.+ .-|= .-|+ |-|++=.+.
T Consensus 8 ~~Kpr--VVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~l----F~PL---------L~qv-AtGtLe~r~-------- 63 (514)
T PTZ00318 8 LLKPN--VVVVGTGWAGCYFARHLNPKLANLHVLSTRNHMV----FTPL---------LPQT-TTGTLEFRS-------- 63 (514)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCC----CCHH---------HHHH-HHCCCCHHH--------
T ss_conf 78885--8999976999999997386898289999999850----1021---------6766-205777577--------
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEE----------CCCCCCCCCCC
Q ss_conf 87307878555346787849999999999997089968980010112025881132220----------35863344543
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM----------QDNSMIRCSTV 150 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~----------~~g~~~~~~~v 150 (626)
.+..+ +.+...+...++ .+++++|++++.+...+.-+.. .....+.=...
T Consensus 64 ---------I~~Pi----------r~i~~~~~~~~~-~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~L 123 (514)
T PTZ00318 64 ---------VCEPI----------TRIQPALAKLPN-RFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKL 123 (514)
T ss_pred ---------EECCH----------HHHHHHHCCCCC-EEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEE
T ss_conf ---------22217----------887676513674-5999999887121078999740124665444456636428878
Q ss_pred CCCCCCCCH
Q ss_conf 334664310
Q gi|254780808|r 151 VLTTGTFLR 159 (626)
Q Consensus 151 iiatGtfl~ 159 (626)
|+|+|.-.+
T Consensus 124 VlA~Gs~tn 132 (514)
T PTZ00318 124 ILAHGARPN 132 (514)
T ss_pred EECCCCCCC
T ss_conf 986786556
No 227
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=96.53 E-value=0.0032 Score=42.44 Aligned_cols=135 Identities=25% Similarity=0.440 Sum_probs=76.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------
Q ss_conf 63578898894268999999985899899998076--26012466700221122489999986303999999--------
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVA-------- 73 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~a-------- 73 (626)
+.||.+|||||=-|.=.|-.+|..|++++|+|-+. -++==-=|=|= | +++-=-.+--.|-+-+
T Consensus 1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LGGTCVNVGCVPK-----K--vMW~aa~~~e~~~~~~~~YGf~~~ 73 (475)
T TIGR01421 1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLGGTCVNVGCVPK-----K--VMWYAASLAETMHRDAADYGFKSE 73 (475)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCCCEEEEECEECC-----H--HHCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 975469983686157888988850760787620004880685011376-----2--320056777887522102785433
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCEEEHHHHCCCCCCCCCEEEEEECC--CCCC
Q ss_conf ---88631488730787855534678784999999999999708---996898001011202588113222035--8633
Q gi|254780808|r 74 ---DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGEVAGFNTEKNIISSIVMQD--NSMI 145 (626)
Q Consensus 74 ---D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~---pni~i~~~eV~~l~~~~~~~~~v~~~~--g~~~ 145 (626)
|.-.+.|-+ .-++ -.|++|=......=.+. .+|+++++-.+ ...+....+.|.-.. ...+
T Consensus 74 lPld~~~l~F~f---------~~l~--~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~-F~~~~kPtveV~g~~nttevy 141 (475)
T TIGR01421 74 LPLDKENLKFNF---------KELK--EKRDAYVDRLNGIYQKNLEKNKVDVIEGHAE-FTKDQKPTVEVNGKENTTEVY 141 (475)
T ss_pred CCCCCCCCEECH---------HHHH--HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-ECCCCCCCEEECCCCCCEEEE
T ss_conf 641003660077---------9998--7667899998887524865055438986788-748889634773642430257
Q ss_pred CCCCCCCCCCCC
Q ss_conf 445433346643
Q gi|254780808|r 146 RCSTVVLTTGTF 157 (626)
Q Consensus 146 ~~~~viiatGtf 157 (626)
.|..++||||--
T Consensus 142 ~A~HIliATGG~ 153 (475)
T TIGR01421 142 TAPHILIATGGK 153 (475)
T ss_pred ECCEEEEECCCC
T ss_conf 627058944872
No 228
>KOG2852 consensus
Probab=96.46 E-value=0.0059 Score=40.55 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=105.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC------CCEEEEECCH---------HH-CCCCCCCCCCCC-C--CHHHHHHHHH-HH
Q ss_conf 57889889426899999998589------9899998076---------26-012466700221-1--2248999998-63
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG------ASTALITHKT---------ST-IGSMSCNPAIGG-L--GKGHLVREID-AL 65 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G------~~v~L~~~~~---------~~-~ael~Cnps~gg-~--akg~L~~Ei~-aL 65 (626)
-.|.|||||--||=.||.|++.+ ..+.|+|.+- .. ++ --|-||+-. + ..=.|.+|++ -+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa-~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA-KWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred EEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 07999888704664200344287667784159999603434355664104567-66378653223577788888777762
Q ss_pred HHHH---HHHHHHHHHHHHHHCC--CCCCCC-----------------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
Q ss_conf 0399---9999886314887307--878555-----------------34678784999999999999708996898001
Q gi|254780808|r 66 DGLM---GRVADAAGIQFRVLNV--KKGPAV-----------------RGPRTQADRELYRLAMQREILSQENLDVIQGE 123 (626)
Q Consensus 66 gg~m---~~~aD~~~i~~r~ln~--skGpAv-----------------~alraqvDR~~fs~~vt~~l~~~pni~i~~~e 123 (626)
+|.- -|+.+.-.+...+=|. .|+|-+ .-.-|||.-.+|-..|-...+..-+++++-+.
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gk 169 (380)
T KOG2852 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGK 169 (380)
T ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCEECHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 68444452243279999602447866677652555567751000136877530117899999999998862676899866
Q ss_pred HCCCCCCCCCEEEEEEC----CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 01120258811322203----58633445433346643101344
Q gi|254780808|r 124 VAGFNTEKNIISSIVMQ----DNSMIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 124 V~~l~~~~~~~~~v~~~----~g~~~~~~~viiatGtfl~g~~~ 163 (626)
|.++.++..++.++... .........+|++.||.++-.+-
T Consensus 170 v~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp 213 (380)
T KOG2852 170 VKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLP 213 (380)
T ss_pred EEEEECCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCCHHHCC
T ss_conf 68863244612154023304843783423899952787332145
No 229
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.42 E-value=0.0093 Score=39.13 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=43.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 788988942689999999858998999980762601246-67002211224899999863
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDAL 65 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~aL 65 (626)
.|-|||+|-||--||+.|||+|++|..||..+.-=|.|. .=|.|.- -|..+.+|++.|
T Consensus 308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRL-PK~IV~~EI~~l 366 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRL-PNQLIDDVVEKI 366 (944)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCC-CHHHHHHHHHHH
T ss_conf 67998857689999999997799339994478788558955876668-789999999999
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.41 E-value=0.022 Score=36.52 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.0
Q ss_pred HCCCEEEEEEEEECCCH--HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 03341566213304334--666666778999998742033
Q gi|254780808|r 358 KKISGLFLAGQINGTTG--YEEAAAQGLVAGINSARKSNK 395 (626)
Q Consensus 358 k~~~~LffAGQI~GteG--YeEAAAqGl~AGiNa~~~~~~ 395 (626)
-.+||+|.||-+++... ..-|+++|-+|++.|-.++..
T Consensus 475 TnvpGVFAAGDvt~~~~kQi~~A~G~Ga~AAlsA~~Yl~r 514 (515)
T TIGR03140 475 TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHC
T ss_conf 7999879856673898667878666479999999998734
No 231
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.37 E-value=0.0059 Score=40.55 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=27.0
Q ss_pred EEEECCCHHHHHHHHHHHHC------CCCEEEEECC
Q ss_conf 88988942689999999858------9989999807
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKL------GASTALITHK 37 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~------G~~v~L~~~~ 37 (626)
|+|||||.+|-=|||.|.|+ +++++|+|-.
T Consensus 4 vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas 39 (466)
T PRK12416 4 VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKE 39 (466)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 999899789999999998725555899867999779
No 232
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.36 E-value=0.011 Score=38.66 Aligned_cols=307 Identities=17% Similarity=0.178 Sum_probs=137.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7889889426899999998589989999807626012466-700221122489999986303999999886314887307
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-NPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-nps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~ 85 (626)
.|-|||+|-||--||..|||+|++|.+||-.+.-=|.|.- =|.+. +-|..+.+|++.|-. .+++|+. |.
T Consensus 434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFR-LPK~IV~~EI~~l~~--------lGVef~~-n~ 503 (993)
T PRK12775 434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFR-LPRDIIDREIQRLKD--------IGVKFET-NK 503 (993)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCC-CCHHHHHHHHHHHHH--------CCEEEEC-CC
T ss_conf 0899783788999999999779964897168889972684377767-888999999999987--------8949983-88
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87855534678784999999999999708996898001011202588113222035863344543334664310134443
Q gi|254780808|r 86 KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG 165 (626)
Q Consensus 86 skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g 165 (626)
.= .|+. .+.+|..+. .-.+|.|++|..+.-.+.+.
T Consensus 504 ~V-----------Gkdi--------------------tl~eL~~e~--------------gyDAVFIg~GA~~~~~lgIp 538 (993)
T PRK12775 504 VV-----------GKTF--------------------TIPQLMNDR--------------GFDAVFVAAGAGAPTFLGIP 538 (993)
T ss_pred EE-----------CCCC--------------------CHHHHHHCC--------------CCCEEEEECCCCCCCCCCCC
T ss_conf 86-----------5607--------------------899995345--------------98989995587867318989
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCC-CCCCCHHHHCH---------HHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 202332224751113310000101120-05444-45441011000---------01344321147876687774356578
Q gi|254780808|r 166 KLKIPAGRMGDSPSNSLFNSFMKFDFD-TGRLK-TGTPARLDGKT---------IIWDKTEKQFADERLIPFSFMTDKIT 234 (626)
Q Consensus 166 ~~~~~~gr~~~~~s~~ls~~l~~~~~~-~~r~k-tgtppri~~~s---------idf~~~e~q~~d~~~~~~s~~~~~~~ 234 (626)
.+...+- .++. +.|.+...- ...+. ..||..+-++- +|-...-.-.+.+. -+.-+...
T Consensus 539 GE~l~GV----~sA~---eFLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaARTA~RLGAe~----VtivYRRt 607 (993)
T PRK12775 539 GEFAGRV----YSAN---EFLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRVARRLGAAT----VRCVYRRS 607 (993)
T ss_pred CCCCCCC----EEHH---HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCE----EEEEEECC
T ss_conf 8888781----7779---99999763357767756786457996999899436999889999769986----79999688
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCC-CCCCCCCCCCCCCC-CCCC-CCCCC---CEEEECCCCCCEEEE
Q ss_conf 0000000012320014777640245754-1443235-64222553212335-6764-33452---013015787764543
Q gi|254780808|r 235 NRQIECGITRTNLETHRIIMENIKHSAI-YSGDIKS-YGPRYCPSIEDKIV-RFGE-RNGHQ---IFLEPEGLNTDVVYP 307 (626)
Q Consensus 235 ~~q~~~~~~~t~~~~~~~~~~~~~~~~~-~~g~~~~-~gprycPsie~k~~-~~~~-~p~h~---VqLrpE~~~~~~~n~ 307 (626)
..++|.+..+....-++-+.+.+-.+|. +.+.-.| +.--.|-..+..-. --|. ||-.. +-|+ ..+.+--
T Consensus 608 e~EMPA~~eEV~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le----~D~VI~A 683 (993)
T PRK12775 608 EAEAPARIEEIRHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELE----CDTVIYA 683 (993)
T ss_pred HHHCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEE----CCEEEEC
T ss_conf 563898899998798659399962697167865886398999998166798988894786788548888----7999995
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEE-ECCCHHHHHHHHHHHHH
Q ss_conf 47766689889999998754340010011000121102354565677654033415662133-04334666666778999
Q gi|254780808|r 308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI-NGTTGYEEAAAQGLVAG 386 (626)
Q Consensus 308 vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI-~GteGYeEAAAqGl~AG 386 (626)
.|++.+. -+.++.|||+ +.|.|+ |.- |+ ..+.-.+||+|.+|-| ||-.=-.+|-+.|=-|+
T Consensus 684 IGq~pnp------l~~~~~pgL~---~~kwGt-I~v---De-----~t~~Ts~pgVFAGGDiVtGaaTVI~AmGaGrrAA 745 (993)
T PRK12775 684 LGTKPNP------IIGQATPGLA---LNKWGN-IAA---DD-----DTQSTNMPGVFAGGDIVTGGATVILAMSAGRRAA 745 (993)
T ss_pred CCCCCCC------CCCCCCCCCE---ECCCCC-EEE---CC-----CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7799983------1003688822---258770-898---98-----8776688887636561255769999987089999
Q ss_pred HHHHHHCC-CCCCCCC
Q ss_conf 99874203-3456546
Q gi|254780808|r 387 INSARKSN-KLDCICF 401 (626)
Q Consensus 387 iNa~~~~~-~~~p~~l 401 (626)
-..+.+++ |+..|-+
T Consensus 746 rsId~yLR~~~~~~~~ 761 (993)
T PRK12775 746 KSIAAWLRLNKKKWPI 761 (993)
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 9999999659867887
No 233
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.26 E-value=0.01 Score=38.91 Aligned_cols=39 Identities=31% Similarity=0.380 Sum_probs=35.4
Q ss_pred CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 987-63578898894268999999985899899998076260
Q gi|254780808|r 1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
||+ ++ |.|||||.=|+-=|+.+|+.|.+|.|+..+++.+
T Consensus 1 M~~ik~--VaViGAG~MG~giA~~~a~~G~~V~l~D~~~e~~ 40 (292)
T PRK07530 1 MMAIKK--VGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRL 40 (292)
T ss_pred CCCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 999888--9998966999999999996799689997988999
No 234
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.22 E-value=0.01 Score=38.85 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=35.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 987635788988942689999999858998999980762601
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|+++ |.|||||.=|+-=|+.+|+.|++|.|+..+++.+.
T Consensus 1 mIkk---V~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~l~ 39 (289)
T PRK09260 1 MMEK---IVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQLA 39 (289)
T ss_pred CCCE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 9676---99979688789999999968998899979989999
No 235
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.17 E-value=0.0074 Score=39.83 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHH
Q ss_conf 567765403341566213304334666-6667789999987
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSA 390 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~ 390 (626)
.+..++| .+||+|.+|-+||.-...- |.+||.+|.-|.+
T Consensus 275 vd~~~rT-s~~~IyA~GDv~g~~~l~~~A~~~~~~~~~~~~ 314 (438)
T PRK07251 275 VDKHCQT-SVPGVFAVGDVNGGLQFTYISLDDFRIVFSYLT 314 (438)
T ss_pred CCCCCCC-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 1897766-786299922557886773688999999999970
No 236
>KOG4254 consensus
Probab=96.09 E-value=0.007 Score=39.97 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999999708996898001011202588113222035863344543334664310
Q gi|254780808|r 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 104 s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
+.++-+.++.|-.=-....+|.+|..+.++++||.+.+|.+..++.|+=-++++-.
T Consensus 267 s~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254 267 SFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred HHHHHHHHHHCCCEEEEHHHHHHEECCCCEEEEEEECCCCEEEEEEEECCCCHHHH
T ss_conf 99999999860614210211446031388278789558858771156517846777
No 237
>PRK06370 mercuric reductase; Validated
Probab=96.08 E-value=0.008 Score=39.57 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=42.5
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCCC-----CCCC-C-CCCCCHHHHHHHHHHCCCC
Q ss_conf 5677654033415662133043346-666667789999987420334-----5654-6-5321079999998860787
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKSNKL-----DCIC-F-SRTDSYIGVMIDDLTSKGV 420 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGY-eEAAAqGl~AGiNa~~~~~~~-----~p~~-l-~R~eaYiGVlIDDLitkg~ 420 (626)
.|..+|| .+||+|.||-+||---- -.|..||.+|+-|+...-... -|.+ + +=.=|.+|.--+.+..+|.
T Consensus 292 Vd~~~~T-s~p~IyA~GDv~g~~~lah~A~~eg~~a~~n~~~~~~~~~~~~~vP~~vft~PeiA~vG~te~~a~~~g~ 368 (459)
T PRK06370 292 VDDQLRT-TNPGIYAAGDCNGRGAFTHTAYNDAEIVAANLLDGGPRKVSDRIVPYATYTDPPLARVGMTEAEARKSGR 368 (459)
T ss_pred ECCCCEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHCCC
T ss_conf 7997563-7874498311468867745899999999999836997432024430466227546885389999987699
No 238
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.06 E-value=0.0051 Score=40.99 Aligned_cols=366 Identities=21% Similarity=0.221 Sum_probs=185.5
Q ss_pred CEEEECCCHHHH----HHHHHHHHCCCCEEEEECC-HHH---CCC-CCC-CCCCCCCCHH------------------HH
Q ss_conf 788988942689----9999998589989999807-626---012-466-7002211224------------------89
Q gi|254780808|r 7 DVIVIGGGHAGC----EAAAVAAKLGASTALITHK-TST---IGS-MSC-NPAIGGLGKG------------------HL 58 (626)
Q Consensus 7 dViVIGaG~AG~----EAA~~~Ar~G~~v~L~~~~-~~~---~ae-l~C-nps~gg~akg------------------~L 58 (626)
||.|||||+.|| ||++..-..|+|+.|++-- .|+ +|+ |+- |-=+|-.|.+ =|
T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~eRSGAVAQGLsAINtY~g~~Grs~~eN~~eDyVRyvr~DlMGl 80 (651)
T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVERSGAVAQGLSAINTYLGLRGRSERENDAEDYVRYVRLDLMGL 80 (651)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHCCHHHH
T ss_conf 94787178552027899998740688379996114654221567667898865167766566888211032110001234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HCC------------------CCCC-CCCCHHHHH------HHHHHHHHH
Q ss_conf 999986303999999886314887------307------------------8785-553467878------499999999
Q gi|254780808|r 59 VREIDALDGLMGRVADAAGIQFRV------LNV------------------KKGP-AVRGPRTQA------DRELYRLAM 107 (626)
Q Consensus 59 ~~Ei~aLgg~m~~~aD~~~i~~r~------ln~------------------skGp-Av~alraqv------DR~~fs~~v 107 (626)
|||==.. =|+|..|.|==||-- -|. +||. -|+.-|=|+ =+=.-+++.
T Consensus 81 vREDL~f--D~aRHVD~~VHlFE~WGLP~w~~p~dG~y~eGaaakvaGkslrkGdaPvReGrWQIMIhGESYKpIvAEAA 158 (651)
T TIGR02061 81 VREDLVF--DVARHVDDAVHLFEEWGLPLWKKPKDGKYLEGAAAKVAGKSLRKGDAPVREGRWQIMIHGESYKPIVAEAA 158 (651)
T ss_pred HHHHHHH--HHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 6788874--12014175100122168963318688874231144442012103788723774158754766604899998
Q ss_pred HHHHHCCCCCEEEHHHHCCCCCCCC---CEEE-----EEECCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCCC
Q ss_conf 9999708996898001011202588---1132-----22035863344543334664310134443-2023322247511
Q gi|254780808|r 108 QREILSQENLDVIQGEVAGFNTEKN---IISS-----IVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGRMGDSP 178 (626)
Q Consensus 108 t~~l~~~pni~i~~~eV~~l~~~~~---~~~~-----v~~~~g~~~~~~~viiatGtfl~g~~~~g-~~~~~~gr~~~~~ 178 (626)
+..+-...|| ..|=-|++|+.|.+ +|+| |.+..=-.+.|++||||||-..+ ++.. ..--.+||.-.+.
T Consensus 159 K~a~g~~~ni-~eRifi~~LL~Dkn~PNriAGAVGFnvR~~~~hvFKaktvivAaGGA~n--~yrPRStGEgaGR~WYa~ 235 (651)
T TIGR02061 159 KKAVGKDRNI-FERIFIVKLLLDKNKPNRIAGAVGFNVREGEYHVFKAKTVIVAAGGASN--VYRPRSTGEGAGRVWYAV 235 (651)
T ss_pred HHHCCCCCCC-EEHEEEEEEECCCCCCCCEECCCEEEECCCCEEEEECCEEEEECCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf 7522754441-1010211000268888712201100101786569871245663066100--135762443677500364
Q ss_pred C-----------CCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHH-HHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 1-----------331000010112005444454410110000134-43211478766877743565-7800000000123
Q gi|254780808|r 179 S-----------NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD-KTEKQFADERLIPFSFMTDK-ITNRQIECGITRT 245 (626)
Q Consensus 179 s-----------~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~-~~e~q~~d~~~~~~s~~~~~-~~~~q~~~~~~~t 245 (626)
- .+-.-...+..|-.-|||||--|. -+=.+.|. ++.=..|++ +.+-.... ...+......-+.
T Consensus 236 w~~GS~Y~m~~~aGA~mT~mEnRfvpaRFKDGYGPV-GAwFL~fK~ka~N~~GEe---Y~~~~~a~L~~y~~~gya~p~~ 311 (651)
T TIGR02061 236 WDAGSAYTMLLKAGAKMTQMENRFVPARFKDGYGPV-GAWFLFFKAKAKNALGEE---YIKTRRAELKEYKDKGYAKPEL 311 (651)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH-HHHHHHHHHHCCCCCCCC---HHHHCHHHCCCCCCCCCCCCCC
T ss_conf 566357899998633243220340220331788876-899988886305788612---3551302203557753458620
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCC--------------CCCCEEEECCC
Q ss_conf 200147776402457541443235642225532123356-----------76433--------------45201301578
Q gi|254780808|r 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-----------FGERN--------------GHQIFLEPEGL 300 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~-----------~~~~p--------------~h~VqLrpE~~ 300 (626)
...||.-|+..+..=.+......|.||=|--..+-=-.- .-+.- ||.--.-|++.
T Consensus 312 shrthrPIPTcLRNH~~~~E~~~GrgPIyM~T~eAlq~~~~~l~~~~~Khlee~awedFLdMtVgQA~LWActn~dP~e~ 391 (651)
T TIGR02061 312 SHRTHRPIPTCLRNHALLREVREGRGPIYMDTKEALQDLAATLDKKKLKHLEEEAWEDFLDMTVGQAVLWACTNVDPKER 391 (651)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 24557888784144699999960879811053888752530103355433676544545101288888887507887778
Q ss_pred CC----CEEEECC-------CCCCCC-HHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 77----6454347-------766689-88999999875434001001100012110235456567765403341566213
Q gi|254780808|r 301 NT----DVVYPNG-------ISTALP-EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ 368 (626)
Q Consensus 301 ~~----~~~n~vG-------FqTsL~-~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ 368 (626)
.+ ++=|+-| |=.|=| .+. +==||....|+-+.-+ +.-.++|||-+|-
T Consensus 392 ~sE~~p~EPY~mGSHsg~cG~WvsGPdEd~--------------------~PeeY~~~~~nG~~YN-RMTTVeGLF~~gD 450 (651)
T TIGR02061 392 NSELAPAEPYVMGSHSGECGIWVSGPDEDL--------------------VPEEYAVRAANGKKYN-RMTTVEGLFAIGD 450 (651)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCC--------------------CCHHHHHHCCCCCCCC-CCCCCHHHHHCCC
T ss_conf 787666677100522246762342775677--------------------8705764156886125-4212014653013
Q ss_pred EECCCHHHHHHHH---HHHHHHHHHHHCCC-CCCCCCC
Q ss_conf 3043346666667---78999998742033-4565465
Q gi|254780808|r 369 INGTTGYEEAAAQ---GLVAGINSARKSNK-LDCICFS 402 (626)
Q Consensus 369 I~GteGYeEAAAq---Gl~AGiNa~~~~~~-~~p~~l~ 402 (626)
=-|-+|--=|+++ |=|||=.|.|.+.. +.++..-
T Consensus 451 ~vGa~pHkFSSGSftEGR~AaKaavr~ildG~k~~~~~ 488 (651)
T TIGR02061 451 AVGASPHKFSSGSFTEGRLAAKAAVRYILDGKKEGKEV 488 (651)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 46888866776641578899999977753367888854
No 239
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.02 E-value=0.053 Score=33.74 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHHHHCCCEEEEEEEEE-CCCH-HHHHHHHHHHHHHHHH
Q ss_conf 776540334156621330-4334-6666667789999987
Q gi|254780808|r 353 PTLETKKISGLFLAGQIN-GTTG-YEEAAAQGLVAGINSA 390 (626)
Q Consensus 353 ~tLe~k~~~~LffAGQI~-GteG-YeEAAAqGl~AGiNa~ 390 (626)
..++.-.+||+|.+|-++ |--= ---|..||.+|.-|+.
T Consensus 342 d~~~~Ts~p~IyAiGDV~~G~p~Lah~A~~eg~vaa~~i~ 381 (541)
T PTZ00052 342 KDLSCTNVPSIFAVGDVAEGVPELAPVAIKAGEILARRLF 381 (541)
T ss_pred ECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3366677773999505468964248999999999999984
No 240
>KOG2844 consensus
Probab=96.02 E-value=0.008 Score=39.59 Aligned_cols=165 Identities=24% Similarity=0.308 Sum_probs=87.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH---CCCCC---C-----CC-------------------------
Q ss_conf 357889889426899999998589989999807626---01246---6-----70-------------------------
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---IGSMS---C-----NP------------------------- 48 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~---~ael~---C-----np------------------------- 48 (626)
.-||+|||||-+||-+|+.+|++|.+..+++-+-.. -.+++ | ++
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~t 118 (856)
T KOG2844 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLHT 118 (856)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 65579985785047899999971465247876411036656333010320368960399988788999999998619976
Q ss_pred ---CCCCC--CHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCCCCC-CCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf ---02211--224-899999863039999--------998863148873078785-553467--8784999999999999
Q gi|254780808|r 49 ---AIGGL--GKG-HLVREIDALDGLMGR--------VADAAGIQFRVLNVKKGP-AVRGPR--TQADRELYRLAMQREI 111 (626)
Q Consensus 49 ---s~gg~--akg-~L~~Ei~aLgg~m~~--------~aD~~~i~~r~ln~skGp-Av~alr--aqvDR~~fs~~vt~~l 111 (626)
-.||+ |.. +=+-|.+.|=|.-.- -..++.-+|-.||..+-- +-+.|. + +|-..--.+.-..-
T Consensus 119 Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~-~DP~~lC~ala~~A 197 (856)
T KOG2844 119 GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGV-MDPAGLCQALARAA 197 (856)
T ss_pred CEECCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHEEEEECCCCCC-CCHHHHHHHHHHHH
T ss_conf 32427816870477789999999976433153105538999988675656667401203588764-48899999999999
Q ss_pred HCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 708996898001011202588113222035863344543334664310134443202332
Q gi|254780808|r 112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA 171 (626)
Q Consensus 112 ~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~ 171 (626)
.+.--+-+..--|++|........+|.|..|. +.+..+|-|||-..+..-.....+.+.
T Consensus 198 ~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL 256 (856)
T KOG2844 198 SALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPL 256 (856)
T ss_pred HHCCCEEEECCCCCEEEEECCCCCCEECCCCC-EECCEEEECHHHHHHHHHHHCCCCCCC
T ss_conf 85384798148742577503775543046764-443527852227798765630785463
No 241
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.98 E-value=0.016 Score=37.43 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 98763578898894268999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.-|+ |.|||||.=|+-=|+.+|+.|++|.|+..+++.+
T Consensus 1 M~i~~--VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l 39 (288)
T PRK08293 1 MTIKK--VTVAGAGVLGSQIAFQTAFKGFDVTIYDISEEAL 39 (288)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 99578--9998978899999999995799289998988999
No 242
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.97 E-value=0.011 Score=38.72 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.2
Q ss_pred HHHHHHCCCEEEEEEEEECCC--HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 776540334156621330433--4666666778999998742033
Q gi|254780808|r 353 PTLETKKISGLFLAGQINGTT--GYEEAAAQGLVAGINSARKSNK 395 (626)
Q Consensus 353 ~tLe~k~~~~LffAGQI~Gte--GYeEAAAqGl~AGiNa~~~~~~ 395 (626)
..++| .+||+|.||-|+-.. ==+-|++.|-+|+++|-+++..
T Consensus 267 e~m~T-nVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~aerYi~~ 310 (555)
T TIGR03143 267 EDMET-NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred CCCCC-CCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 99705-999889883452898773547087579999999999999
No 243
>KOG0405 consensus
Probab=95.96 E-value=0.035 Score=35.00 Aligned_cols=138 Identities=22% Similarity=0.311 Sum_probs=78.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7635788988942689999999858998999980762---6012466700221122489999986303999999886314
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ 79 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~ 79 (626)
.+.||-.|||||--|.-+|-.+|..|++|.|+|..-. ++----|-|- | ++.-..-++..|--+.|.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPK-----K--vm~~~a~~~~~~~da~~y---- 86 (478)
T KOG0405 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPK-----K--VMWYAADYSEEMEDAKDY---- 86 (478)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCC-----E--EEEEHHHHHHHHHHHHHC----
T ss_conf 44236699847861367767787538537998637786744786045641-----3--677444556775456642----
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC--CCCCCCCCCCC
Q ss_conf 8873078785553467878499999999999---970899689800101120258811322203586--33445433346
Q gi|254780808|r 80 FRVLNVKKGPAVRGPRTQADRELYRLAMQRE---ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTT 154 (626)
Q Consensus 80 ~r~ln~skGpAv~alraqvDR~~fs~~vt~~---l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~--~~~~~~viiat 154 (626)
-+-+.-+|.=-|-.=- --|+.|-.....+ ..+..++.+++++..=..+.. +.|...+++ .+.++.+.+||
T Consensus 87 -G~~~~~~~~fdW~~ik-~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~---v~V~~~d~~~~~Ytak~iLIAt 161 (478)
T KOG0405 87 -GFPINEEGSFDWKVIK-QKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE---VEVEVNDGTKIVYTAKHILIAT 161 (478)
T ss_pred -CCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC---EEEEECCCEEEEEECCEEEEEE
T ss_conf -9853444677679987-5116899988789885423154069962678758994---4799538815787214089973
Q ss_pred CC
Q ss_conf 64
Q gi|254780808|r 155 GT 156 (626)
Q Consensus 155 Gt 156 (626)
|-
T Consensus 162 Gg 163 (478)
T KOG0405 162 GG 163 (478)
T ss_pred CC
T ss_conf 78
No 244
>PRK07660 consensus
Probab=95.95 E-value=0.017 Score=37.27 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=35.8
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 987635788988942689999999858998999980762601
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|.-|+ |.|||||.=|+-=|+.+|+.|++|.|+..+++.+.
T Consensus 1 M~Ik~--VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~ 40 (283)
T PRK07660 1 MGVQK--IVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQEQLD 40 (283)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 99788--99989698999999999966981899979889999
No 245
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.90 E-value=0.013 Score=38.16 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHH
Q ss_conf 56776540334156621330433466-66667789999987
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSA 390 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~ 390 (626)
.|..+|| .+|++|-||-++|---.. .|..||.+|+-|+.
T Consensus 293 vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~eg~~a~~ni~ 332 (462)
T PRK06416 293 VDEQMRT-NVPNIYAIGDVVGGPMLAHKASAEGKIAAEAIA 332 (462)
T ss_pred CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5666325-997458714667887765899999999999875
No 246
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.90 E-value=0.011 Score=38.46 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=23.8
Q ss_pred HHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHH
Q ss_conf 67765403341566213304334666-6667789999987
Q gi|254780808|r 352 FPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSA 390 (626)
Q Consensus 352 ~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~ 390 (626)
+..++| ..|++|.+|-++|.--..- |.+||.+|.-|..
T Consensus 277 d~~~~T-s~~~IyA~GDv~g~~~lah~A~~e~~~~~~~i~ 315 (441)
T PRK08010 277 DKYLHT-TADNIWAMGDVTGGLQFTYISLDDYRIVRDELL 315 (441)
T ss_pred CCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 898873-887689970268986763689999999999983
No 247
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.86 E-value=0.019 Score=36.91 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=35.2
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 98763578898894268999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.-|+ |.|||||.-|+-=|+.+|+.|++|.|+..+++.+
T Consensus 1 m~i~~--VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~l 39 (282)
T PRK05808 1 MSIQK--IGVIGAGTMGNGIAQVCAVAGYDVVMVDISDEAV 39 (282)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 97268--9998978899999999995799389997998999
No 248
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.86 E-value=0.012 Score=38.33 Aligned_cols=39 Identities=36% Similarity=0.581 Sum_probs=35.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 578898894268999999985899899998076260124
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
-.|+|||+|-||..||..+.++|+.|..+..+++++-++
T Consensus 21 a~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~~~ 59 (150)
T pfam01262 21 AKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQL 59 (150)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 779998987899999999986799899972999999999
No 249
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.039 Score=34.68 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=35.2
Q ss_pred HHHCCCEEEEEEEEECCCH--HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5403341566213304334--66666677899999874203345
Q gi|254780808|r 356 ETKKISGLFLAGQINGTTG--YEEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 356 e~k~~~~LffAGQI~GteG--YeEAAAqGl~AGiNa~~~~~~~~ 397 (626)
.--.+||+|-||-|+.-.+ ..-|+++|.+|+.+|.+++....
T Consensus 261 ~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~~ 304 (305)
T COG0492 261 METSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESLA 304 (305)
T ss_pred CEECCCCEEECHHHCCCCCCEEEEHHCCHHHHHHHHHHHHHHCC
T ss_conf 27045888986233156321220021538999999998665406
No 250
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.84 E-value=0.012 Score=38.28 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCHHHHHHHHHHCCCC
Q ss_conf 56776540334156621330433466-66667789999987420334565465------321079999998860787
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSNKLDCICFS------RTDSYIGVMIDDLTSKGV 420 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~~~~p~~l~------R~eaYiGVlIDDLitkg~ 420 (626)
.+..+|| .+||+|-+|-++|-.-.. -|..||.+|+-|..-.-...++..++ =.-|.+|.--+++..+|.
T Consensus 296 vd~~~~T-s~p~IyA~GDv~g~~~lah~A~~qg~~aa~~i~g~~~~~~~~~vP~~vft~Peia~VGlte~~a~~~g~ 371 (472)
T PRK06467 296 VDKQCRT-NVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGI 371 (472)
T ss_pred CCCCCCC-CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHCCC
T ss_conf 4997535-886358611246887766799999999999866999655666541599815535886388999987699
No 251
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.83 E-value=0.027 Score=35.86 Aligned_cols=59 Identities=29% Similarity=0.481 Sum_probs=44.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC--CCCCCCCHH-HHHHHHHHHHH
Q ss_conf 78898894268999999985899899998076260124667--002211224-89999986303
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKG-HLVREIDALDG 67 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn--ps~gg~akg-~L~~Ei~aLgg 67 (626)
.|-|||-|=||-=||=||+|.|+.|+.|| |-|++|=|+-= |-++ +=|+ |+.|=|+.|-.
T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfE-R~DR~GGLL~YGIPnmK-LdK~e~v~RRi~~l~a 214 (517)
T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFE-REDRVGGLLRYGIPNMK-LDKEEIVDRRIDLLEA 214 (517)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 68997567579999999853588389974-36788863024888743-3738899999999874
No 252
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=95.83 E-value=0.079 Score=32.53 Aligned_cols=96 Identities=18% Similarity=0.388 Sum_probs=71.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk 87 (626)
.+|||||==|||=|..-+++|++|+.+||-+.=+
T Consensus 181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drIL---------------------------------------------- 214 (481)
T TIGR01350 181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRIL---------------------------------------------- 214 (481)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC----------------------------------------------
T ss_conf 6998786677889999985398089994575003----------------------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCC---CCCCCCCEE-EEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf 855534678784999999999999708996898001011---202588113-2220358---6334454333466431
Q gi|254780808|r 88 GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG---FNTEKNIIS-SIVMQDN---SMIRCSTVVLTTGTFL 158 (626)
Q Consensus 88 GpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~---l~~~~~~~~-~v~~~~g---~~~~~~~viiatGtfl 158 (626)
|.- |++ .|+.|++.|+..=|++++-+.-.. +...++.+. .+..... ..+.+..|.+|.|=-.
T Consensus 215 -p~~-------D~e-vSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~p 283 (481)
T TIGR01350 215 -PGE-------DAE-VSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKP 283 (481)
T ss_pred -CCC-------CHH-HHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCC
T ss_conf -543-------168-999999999744984985485442335775287899999987998058898739999842434
No 253
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.79 E-value=0.01 Score=38.83 Aligned_cols=40 Identities=30% Similarity=0.563 Sum_probs=35.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 5788988942689999999858998999980762601246
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
-+|+|||||-+|.|||-.+.-+|.+|..++.+++++-+|-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ld 208 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD 208 (371)
T ss_pred CCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 6089987761240699997236870699952778876406
No 254
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.79 E-value=0.015 Score=37.68 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHHHHCCCC--C----C-CCCC-CCCCHHHHHHHHHHCCCC
Q ss_conf 567765403341566213304334666-6667789999987420334--5----6-5465-321079999998860787
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSARKSNKL--D----C-ICFS-RTDSYIGVMIDDLTSKGV 420 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~~~~~~~--~----p-~~l~-R~eaYiGVlIDDLitkg~ 420 (626)
.+..++| .+||+|.+|-++|---..- |..||.+|+-|++-.-... + | .++. =.-|++|.--+....+|.
T Consensus 296 vd~~~~T-s~~~IyA~GDv~g~~~Lah~A~~eg~~a~~~i~~~~~~~~~d~~~iP~~vft~PeiA~VGlte~eA~~~g~ 373 (467)
T PRK07818 296 IDDYMRT-NVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLPLGDYRMMPRATFCQPQVASFGLTEEQAREEGY 373 (467)
T ss_pred ECCCCCC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCC
T ss_conf 8998864-78739997226888787148999999999986599986334556665499757876997389999986499
No 255
>pfam00996 GDI GDP dissociation inhibitor.
Probab=95.74 E-value=0.016 Score=37.49 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=33.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8763578898894268999999985899899998076
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+.+|||||+|-||.=|=-|.+|++.|.+|+-+--|.
T Consensus 1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~ 37 (439)
T pfam00996 1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRND 37 (439)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9985029997998799999999973699899977998
No 256
>KOG1238 consensus
Probab=95.70 E-value=0.014 Score=37.92 Aligned_cols=33 Identities=45% Similarity=0.691 Sum_probs=29.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 7635788988942689999999858-99899998
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKL-GASTALIT 35 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~-G~~v~L~~ 35 (626)
...||.||||||-|||=-|-.|+.- -.+|+|+|
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLE 88 (623)
T KOG1238 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLE 88 (623)
T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 3579989989873127888765138873499995
No 257
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.70 E-value=0.026 Score=35.99 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=35.3
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 987635788988942689999999858998999980762601
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|--|+ |.|||||.-|+-=|..+|+.|++|.|+..+++.+.
T Consensus 1 M~Ik~--VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~ 40 (291)
T PRK06035 1 MDIKV--IGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILK 40 (291)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 99588--99988768899999999958998899989989999
No 258
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.69 E-value=0.016 Score=37.38 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHH
Q ss_conf 67765403341566213304334666-66677899999
Q gi|254780808|r 352 FPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGIN 388 (626)
Q Consensus 352 ~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiN 388 (626)
+..+|| .+|++|.+|-+||..--.- |..||.+|.-|
T Consensus 298 d~~~~T-s~~~IyA~GDv~g~~~l~h~A~~eg~~~~~~ 334 (466)
T PRK06115 298 NEHHRT-SVPGVWVIGDVTSGPMLAHKAEDEAVACIER 334 (466)
T ss_pred CCCCCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 776544-7887798423789867705899999999999
No 259
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=95.64 E-value=0.012 Score=38.35 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=83.6
Q ss_pred CEEEECCCHHHHHHHHHH--HHCCCCEEEEECCHHHCCCCCCCCCCCCCCH-----------HH-HHHHHHHH---HHHH
Q ss_conf 788988942689999999--8589989999807626012466700221122-----------48-99999863---0399
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVA--AKLGASTALITHKTSTIGSMSCNPAIGGLGK-----------GH-LVREIDAL---DGLM 69 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~--Ar~G~~v~L~~~~~~~~ael~Cnps~gg~ak-----------g~-L~~Ei~aL---gg~m 69 (626)
||||||||||||==|+.| ||=-.++.++| .++++||... +| ++..+..- ||--
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IE----------a~~~igGNHtWSffd~Dls~~qhawla~lv~~~WpgGYe 70 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIE----------AAASIGGNHTWSFFDADLSDAQHAWLADLVVYDWPGGYE 70 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEE----------CCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 9788727335789999875259872899984----------377668875301003666743577765340132889713
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC-----CCCC
Q ss_conf 99998863148873078785553467878499999999999970899689800101120258811322203-----5863
Q gi|254780808|r 70 GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-----DNSM 144 (626)
Q Consensus 70 ~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-----~g~~ 144 (626)
.|=+.. -|-||+ |=.+. --..|++.++.++-.+. -++...|.++..+. |.+. .|..
T Consensus 71 VRFp~~----rrkL~t----aY~S~----tStrf~e~l~q~fpe~s--~~~~r~a~~~~Ad~-----V~L~PsqyG~g~~ 131 (392)
T TIGR01789 71 VRFPKR----RRKLKT----AYLSM----TSTRFREELEQKFPERS--VLLDRKAVEVDADA-----VDLEPSQYGNGRV 131 (392)
T ss_pred ECCHHH----HHHHHC----CCCCC----HHHHHHHHHHHHCCCCE--EEECCEEEEEEECE-----EEECCCCCCCCCE
T ss_conf 335555----433210----22110----01778999998768720--56401567766075-----6626544689626
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 34454333466431013444320233222475111331
Q gi|254780808|r 145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL 182 (626)
Q Consensus 145 ~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~l 182 (626)
+.|.+||-+=|=-=+.-+..|-+.|-+--+-.....++
T Consensus 132 i~A~~VID~Rg~~P~~~L~~GfQ~FlG~e~RL~~PHGl 169 (392)
T TIGR01789 132 IRARAVIDARGFKPSAALKVGFQVFLGREVRLAEPHGL 169 (392)
T ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHCCCHHCCCCCCC
T ss_conf 76402772588877721025323442320001578888
No 260
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.62 E-value=0.04 Score=34.60 Aligned_cols=102 Identities=23% Similarity=0.386 Sum_probs=61.5
Q ss_pred EEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCHHHCC------CCCC----C-----------------CC
Q ss_conf 88988942-----------689999999858998999980762601------2466----7-----------------00
Q gi|254780808|r 8 VIVIGGGH-----------AGCEAAAVAAKLGASTALITHKTSTIG------SMSC----N-----------------PA 49 (626)
Q Consensus 8 ViVIGaG~-----------AG~EAA~~~Ar~G~~v~L~~~~~~~~a------el~C----n-----------------ps 49 (626)
|.|||+|. +|+.|.+++-..|+.|.|+..||.++- --++ . |+
T Consensus 10 vLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~~ 89 (1063)
T PRK05294 10 ILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPT 89 (1063)
T ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 99989882510372332656999999999869989998798544107877664378727989999999997599978866
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 22112248999998630399999988631488730787855534678784999999999999708996898
Q gi|254780808|r 50 IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 50 ~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
+||--.=.|..|+..-|- -++.+| ++|-++ ..+...--||++|.+.|++.=+..|.-.++
T Consensus 90 ~GGQtaLnla~~L~~~Gi-----L~~~~v--~lLGt~----~~~I~~aedR~~F~~~l~~i~~p~~~s~~~ 149 (1063)
T PRK05294 90 MGGQTALNLALELAESGV-----LEKYGV--ELIGAK----LEAIDKAEDRELFKEAMKKIGLPVPRSGIA 149 (1063)
T ss_pred CCCHHHHHHHHHHHHCCC-----HHHCCC--EEECCC----HHHHHHHHCHHHHHHHHHHCCCCCCCCHHC
T ss_conf 778059999999997596-----776497--275699----999997778999999999769999972530
No 261
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=95.60 E-value=0.016 Score=37.48 Aligned_cols=333 Identities=19% Similarity=0.207 Sum_probs=170.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---CCHH--------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 63578898894268999999985899899998---0762--------601246670022112248999998630399999
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTS--------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV 72 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~---~~~~--------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~ 72 (626)
.+||.||||||=-|-=||=.+|..|.+|.|+- ..|. +++--=|=|= -|++---.||..+-.-
T Consensus 1 ydyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPK-------KLMHqAa~~G~~lkld 73 (513)
T TIGR01438 1 YDYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPK-------KLMHQAALLGKALKLD 73 (513)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC-------HHHHHHHHHHHHHHHH
T ss_conf 964279985897346899999860991899963356988821476753575055483-------5678888876887553
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHH--H--HHHHHHHHHHHHHHCCC---CCEEEHHHHCCCC-----CCCCCEEEEEE-
Q ss_conf 9886314887307878555346787--8--49999999999997089---9689800101120-----25881132220-
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQ--A--DRELYRLAMQREILSQE---NLDVIQGEVAGFN-----TEKNIISSIVM- 139 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraq--v--DR~~fs~~vt~~l~~~p---ni~i~~~eV~~l~-----~~~~~~~~v~~- 139 (626)
+++ =||-.--| + |=...++.|++.|.+.- .+.+.+.-|+=+. .+++++..-.|
T Consensus 74 s~~--------------YGWn~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~ 139 (513)
T TIGR01438 74 SKK--------------YGWNVEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATD 139 (513)
T ss_pred HHH--------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEE
T ss_conf 565--------------188853664322237899998864555400320000101540266300244278468999860
Q ss_pred ----CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHH
Q ss_conf ----3586334454333466431013444320233222475111331000010112005444454410110000134432
Q gi|254780808|r 140 ----QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE 215 (626)
Q Consensus 140 ----~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e 215 (626)
.--..+.++.++||||. .-.+++.--|+.-.---|+++..+...- |-.=.+-+.|+..+.+-
T Consensus 140 kGd~~ke~~~sa~~~lIaTG~---------RP~yp~~ipGaKEl~ItSDDlFsL~~~P-----GKTLvVGasYVALECaG 205 (513)
T TIGR01438 140 KGDKKKEEILSAKRVLIATGL---------RPKYPDDIPGAKELSITSDDLFSLKKVP-----GKTLVVGASYVALECAG 205 (513)
T ss_pred CCCCCCCEEEECCEEEEECCC---------CCCCCCCCCCCCCCCCCCHHHCCCCCCC-----CCEEEECCCHHHHHHHH
T ss_conf 678763204503636980478---------8888888888401101301220366886-----86578776142357788
Q ss_pred HCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 114787668777435657--80000000012320014777640245754144323564222553212335676433-452
Q gi|254780808|r 216 KQFADERLIPFSFMTDKI--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN-GHQ 292 (626)
Q Consensus 216 ~q~~d~~~~~~s~~~~~~--~~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p-~h~ 292 (626)
-..+=...--.--.+... +-+|+.- ......+++.+...+-- -|.-...+..- -|.--.+++.|.|++ ...
T Consensus 206 FL~~~g~dV~V~VRSI~LrGFDqdca~-kv~ehm~e~Gvkfk~~~-~p~kve~~~~G----tPGrlk~~v~ftD~~G~~~ 279 (513)
T TIGR01438 206 FLAALGLDVTVLVRSILLRGFDQDCAV-KVKEHMKEQGVKFKEQV-VPKKVEKVDSG----TPGRLKVLVKFTDKDGNTI 279 (513)
T ss_pred HHHHCCCCEEEEEEEEECCCCCHHHHH-HHHHHHHCCCEEEEEEE-EEEEEEEECCC----CCCEEEEEEEEECCCCCCC
T ss_conf 986339964999988523475778999-99988640896887014-67876651588----9951789999845788744
Q ss_pred CEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf 01301578776454347766689889999998754340010011000121102354565677654033415662133043
Q gi|254780808|r 293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT 372 (626)
Q Consensus 293 VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gt 372 (626)
. ....|.+|=.|=...++ . =+|||+ .|+-|==+-+-+-..++--.+|.+|.-|-| +
T Consensus 280 ~-----eeYdTVl~AiGR~~~~~---------~-lnLen~-------gv~~nk~~gKI~ade~~~tn~p~iyAvGDi--~ 335 (513)
T TIGR01438 280 E-----EEYDTVLYAIGRKADLK---------K-LNLENV-------GVKVNKKSGKILADELERTNVPSIYAVGDI--V 335 (513)
T ss_pred C-----CCCCEEEEEECCCCCCC---------C-CCCCCC-------CEEEECCCCCEEECCCCCCCCCCEEEEEEE--E
T ss_conf 4-----23011566625876644---------3-163213-------207615578775032335788827886456--5
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 34666666778999998742033456546
Q gi|254780808|r 373 TGYEEAAAQGLVAGINSARKSNKLDCICF 401 (626)
Q Consensus 373 eGYeEAAAqGl~AGiNa~~~~~~~~p~~l 401 (626)
|+=.|=+=--+=||-=.|+++-+....+.
T Consensus 336 e~~~ELtPvAIqaG~lLA~RLf~~S~~i~ 364 (513)
T TIGR01438 336 EDKLELTPVAIQAGKLLADRLFKDSKEIV 364 (513)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 48655543778877999987414882688
No 262
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.46 E-value=0.022 Score=36.42 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCCCC----C---CCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 5677654033415662133043346-6666677899999874203345----6---546532107999999886078774
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKSNKLD----C---ICFSRTDSYIGVMIDDLTSKGVLE 422 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~GteGY-eEAAAqGl~AGiNa~~~~~~~~----p---~~l~R~eaYiGVlIDDLitkg~~E 422 (626)
-+..++| .+||+|.||-+||---. -.|..||.+|+-|+.......+ | |+.| .=|++|.--+++..+|.
T Consensus 306 vd~~~~T-s~p~IyA~GDv~g~~~l~~~A~~eg~~a~~~~~g~~~~~~~~~vP~~vft~P-eia~vGlte~~a~~~g~-- 381 (475)
T PRK06327 306 VDDHCRT-NVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSP-EIAWVGKTEQQLKAEGV-- 381 (475)
T ss_pred CCCCCCC-CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CEEEEECCHHHHHHCCC--
T ss_conf 6997546-9975387101478877755999999999998669997665676614884377-67866588999987699--
Q ss_pred CHHH
Q ss_conf 0244
Q gi|254780808|r 423 PYRM 426 (626)
Q Consensus 423 PYRM 426 (626)
+|++
T Consensus 382 ~~~~ 385 (475)
T PRK06327 382 EYKA 385 (475)
T ss_pred CEEE
T ss_conf 8899
No 263
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.34 E-value=0.025 Score=36.08 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 788988942689999999858998999980762
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
+|.|||||.||.-||++|...|..|.++|.---
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 479975636889999999866957999973887
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.34 E-value=0.029 Score=35.63 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=60.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
.|+|||||.-|+|.|..++++|++|.|+++.+. + .+.+.
T Consensus 150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~-~-----~~~~d----------------------------------- 188 (438)
T PRK13512 150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK-I-----NKLMD----------------------------------- 188 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC-C-----CCCCC-----------------------------------
T ss_conf 799989558999999999972990899993573-1-----20049-----------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 7855534678784999999999999708996898-001011202588113222035863344543334664310
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
.+ +++.+.+.++.+ +|++. ..+|+.+... .+.+.+|..+.+..||+++|---+
T Consensus 189 -------------~~-~~~~~~~~l~~~-gv~~~~~~~v~~i~~~-----~v~~~~g~~~~~D~vi~a~G~~Pn 242 (438)
T PRK13512 189 -------------AD-MNQPILDELDKR-EIPYRLNEEIDAINGN-----EITFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred -------------HH-HHHHHHHHHHHC-CCEEEECCEEEEEECC-----EEEEEECCEEEECEEEEEEECCCC
T ss_conf -------------99-999999999868-9999958779999797-----999932889740789996710027
No 265
>KOG0404 consensus
Probab=95.30 E-value=0.049 Score=33.96 Aligned_cols=115 Identities=23% Similarity=0.395 Sum_probs=69.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35788988942689999999858998999980762601246670022112248999--9986303999999886314887
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~--Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
+-.|+|||-|-|+--||..+||.-+|-+|||- .|.-+++-| |||.- |++-+-|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG------~~~~~i~pG----GQLtTTT~veNfPGF-------------- 63 (322)
T KOG0404 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEG------MMANGIAPG----GQLTTTTDVENFPGF-------------- 63 (322)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE------EECCCCCCC----CEEEEEECCCCCCCC--------------
T ss_conf 20389983580677789997650267568811------111686888----634565201348999--------------
Q ss_pred HCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 30787855-534678784999999999999708996898001011202588113222035863344543334664310
Q gi|254780808|r 83 LNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 83 ln~skGpA-v~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
|- +-++ ..+||. ++--+. -..+|+.+.|.++......-. +.| +.....+.++|++||.-..
T Consensus 64 ------Pdgi~G~-~l~d~m------rkqs~r-~Gt~i~tEtVskv~~sskpF~-l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404 64 ------PDGITGP-ELMDKM------RKQSER-FGTEIITETVSKVDLSSKPFK-LWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred ------CCCCCCH-HHHHHH------HHHHHH-HCCEEEEEEHHHCCCCCCCEE-EEE-CCCCEEEEEEEEECCCCEE
T ss_conf ------7545668-899999------988875-164654100222223689769-884-3772453069992163012
No 266
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=95.23 E-value=0.11 Score=31.61 Aligned_cols=88 Identities=15% Similarity=0.378 Sum_probs=64.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
+|+|||||=.=+|=|+.|++.+.+|.|+.=| |.|
T Consensus 153 ~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRR-d~f--------------------------------------------- 186 (321)
T TIGR01292 153 EVAVVGGGDSALEEALYLTRIAKKVTLVHRR-DKF--------------------------------------------- 186 (321)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECC-CCC---------------------------------------------
T ss_conf 8999879824888889998538767999779-863---------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCC--CCEEE-HHHHCCCCCCC-CCEEEEEECCCC-----CCCCCCCCCCCC
Q ss_conf 78555346787849999999999997089--96898-00101120258-811322203586-----334454333466
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQE--NLDVI-QGEVAGFNTEK-NIISSIVMQDNS-----MIRCSTVVLTTG 155 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~p--ni~i~-~~eV~~l~~~~-~~~~~v~~~~g~-----~~~~~~viiatG 155 (626)
|| ++.+.+++++.| ||+++ ..+|.+|.-++ ..|.+|.+.+.. ++.+..|-++-|
T Consensus 187 --------RA-------~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG 249 (321)
T TIGR01292 187 --------RA-------EKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIG 249 (321)
T ss_pred --------CC-------CHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEEC
T ss_conf --------63-------2899989983789878996486899996178315533589962388488998444789841
No 267
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=95.23 E-value=0.03 Score=35.50 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC----CCEEEEEC--CHHH
Q ss_conf 57889889426899999998589----98999980--7626
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG----ASTALITH--KTST 40 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G----~~v~L~~~--~~~~ 40 (626)
|||+|+|||++|.==|.++...- .||.|+++ .|+.
T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l 41 (481)
T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKL 41 (481)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH
T ss_conf 92898888578999999973187320230678652348234
No 268
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.10 E-value=0.037 Score=34.88 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=14.3
Q ss_pred HHHHHHHCCCEEEEEEEEEC
Q ss_conf 67765403341566213304
Q gi|254780808|r 352 FPTLETKKISGLFLAGQING 371 (626)
Q Consensus 352 ~~tLe~k~~~~LffAGQI~G 371 (626)
++++|+ .+||+|.||-++|
T Consensus 256 d~~~~T-s~~~VyA~GDva~ 274 (277)
T pfam07992 256 DEYLRT-SVPGIYAAGDVAE 274 (277)
T ss_pred CCCCEE-CCCCEEEEEECCC
T ss_conf 929740-9999999886889
No 269
>PTZ00318 NADH dehydrogenase; Provisional
Probab=95.08 E-value=0.064 Score=33.16 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 104 s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
+++..+.|+.. +|+|....|++...+ .+.+.+|..+.+..+|=|+|--.+.
T Consensus 236 s~~a~~~L~~~-GVeV~~~~vv~v~~~-----~v~~~~Ge~i~~~tvVWtAGV~a~p 286 (514)
T PTZ00318 236 RRWGKRRLDAL-GVRIVKGAVVAVTDK-----EVFTKSGEVLPTGLVVWSTGVGPSP 286 (514)
T ss_pred HHHHHHHHHHC-CEEEEECCEEEEECC-----EEEECCCCEEECCEEEEECCCCCCC
T ss_conf 99999999878-949983628998689-----5896798199866899915887670
No 270
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.98 E-value=0.17 Score=30.07 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=88.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHH-----------------CCCCCC--CCCCCCCCHHHHHH
Q ss_conf 9876357889889426899999998589-989999807626-----------------012466--70022112248999
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTST-----------------IGSMSC--NPAIGGLGKGHLVR 60 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~-----------------~ael~C--nps~gg~akg~L~~ 60 (626)
||++.||+|-||-|-+----|.++...+ .+++-+|.+|+= ++-||- ||.=-=.= =.-.+
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySF-LNYL~ 79 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSF-LNYLH 79 (436)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHH-HHHHH
T ss_conf 98764026887048327899987350257525787347888767875557864445005632553589983079-99998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHC---CCCCCCCCEEEE
Q ss_conf 99863039999998863148873078785553467878499999999999970899689800101---120258811322
Q gi|254780808|r 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA---GFNTEKNIISSI 137 (626)
Q Consensus 61 Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~---~l~~~~~~~~~v 137 (626)
|=+.| |+-||...= . +=|..|..+.+-+-+.-|++..- ++|+ +++.+.....-+
T Consensus 80 ~h~RL--------------y~Fl~~e~f-------~-i~R~Ey~dY~~Waa~~l~~~rfg-~~V~~i~~~~~d~~~~~~~ 136 (436)
T COG3486 80 EHGRL--------------YEFLNYETF-------H-IPRREYNDYCQWAASQLPSLRFG-EEVTDISSLDGDAVVRLFV 136 (436)
T ss_pred HCCHH--------------HHHHHHHCC-------C-CCHHHHHHHHHHHHHHCCCCCCC-CEECCCCCCCCCCEEEEEE
T ss_conf 70657--------------655420023-------5-55888999999998408723368-7012210247763058999
Q ss_pred EECCCCCCCCCCCCCCCCC
Q ss_conf 2035863344543334664
Q gi|254780808|r 138 VMQDNSMIRCSTVVLTTGT 156 (626)
Q Consensus 138 ~~~~g~~~~~~~viiatGt 156 (626)
.+.++..+.|+.+|+.+|+
T Consensus 137 ~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 137 VTANGTVYRARNLVLGVGT 155 (436)
T ss_pred ECCCCCEEEEEEEEECCCC
T ss_conf 8278847886037982599
No 271
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.90 E-value=0.22 Score=29.33 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCEEEEEEEEECC-------CHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5677654033415662133043-------3466666677899999874203345654
Q gi|254780808|r 351 LFPTLETKKISGLFLAGQINGT-------TGYEEAAAQGLVAGINSARKSNKLDCIC 400 (626)
Q Consensus 351 L~~tLe~k~~~~LffAGQI~Gt-------eGYeEAAAqGl~AGiNa~~~~~~~~p~~ 400 (626)
.+++||++..||+|.+|-..-+ +|+ -|-.||-+++-|..+.++|+++-.
T Consensus 262 Vd~~lq~~~~~~VfAiGD~a~~~~~p~pk~g~-~A~~qa~~~a~Ni~~~l~g~~~~~ 317 (364)
T TIGR03169 262 VDPTLQSLSHPHVFAAGDCAVITDAPRPKAGV-YAVRQAPILAANLRASLRGQPLRP 317 (364)
T ss_pred ECCCCEECCCCCEEEECCEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78873768999999971543688999997438-899999999999999966999999
No 272
>PRK09117 consensus
Probab=94.89 E-value=0.05 Score=33.90 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=32.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|.|||||.-|+-=|+.+|+.|.+|.|+..+++.+.
T Consensus 5 VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~ 39 (282)
T PRK09117 5 VGIIGAGTMGNGIAQACAVAGLDVVMVDISDAAVQ 39 (282)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 99989779999999999967996899989889999
No 273
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=94.79 E-value=0.051 Score=33.87 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=71.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 635788988942689999999858998999980762601246670022112248-9999986303999999886314887
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDALDGLMGRVADAAGIQFRV 82 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~-L~~Ei~aLgg~m~~~aD~~~i~~r~ 82 (626)
|+ |.|||||.+|.-||-.+-+.|+.+.++|.+. .|||+=.=. =..+ | ...+-+ .-.
T Consensus 2 Kr--VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~----------~iGG~W~~~~~~~~-----~-~~~~y~-----sl~ 58 (532)
T pfam00743 2 KK--VAVIGAGVSGLSSIKCCLEEGLEPTCFERSD----------DIGGLWRFTEHVEE-----G-RASIYK-----SVV 58 (532)
T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC----------CCCCCCCCCCCCCC-----C-CCCCCC-----CEE
T ss_conf 87--9998972999999999987799829997799----------97350668888788-----8-676489-----706
Q ss_pred HCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE--HHHHCCCCCCC----CCEEEEEEC-CCCCC-
Q ss_conf 307878---------55534678784999999999999708996898--00101120258----811322203-58633-
Q gi|254780808|r 83 LNVKKG---------PAVRGPRTQADRELYRLAMQREILSQENLDVI--QGEVAGFNTEK----NIISSIVMQ-DNSMI- 145 (626)
Q Consensus 83 ln~skG---------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~--~~eV~~l~~~~----~~~~~v~~~-~g~~~- 145 (626)
+|.||. |.-+.. - .-+..+.++++...+......-+ .-+|+++...+ ..-..|.+. +|...
T Consensus 59 ~Ntsk~~~~fSDfP~P~~~p~-f-~~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~ 136 (532)
T pfam00743 59 TNSSKEMSCFSDFPFPEDYPN-F-MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGKQES 136 (532)
T ss_pred EECCCHHHCCCCCCCCCCCCC-C-CCHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEEECCEEEE
T ss_conf 858900513899989987889-9-89899999999999980996737657789999976676668618999985890889
Q ss_pred -CCCCCCCCCCCCCHHHHH
Q ss_conf -445433346643101344
Q gi|254780808|r 146 -RCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 146 -~~~~viiatGtfl~g~~~ 163 (626)
.-.+||+|||.+....+-
T Consensus 137 ~~fD~ViVctG~~~~P~iP 155 (532)
T pfam00743 137 AVFDAVMVCTGHHTNPHLP 155 (532)
T ss_pred EEEEEEEEECCCCCCCCCC
T ss_conf 9977999946677868767
No 274
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.76 E-value=0.076 Score=32.62 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=35.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 98763578898894268999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|+-=.|.|||||.=|+-=|+.+|+.|++|.|+..+++.+
T Consensus 1 M~~~Ik~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~~~~l 41 (310)
T PRK06130 1 MDNPIQNLAIIGAGAMGSGIAALFASKGLDVVLIDPMPGAL 41 (310)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 98998889897877999999999985899889997999999
No 275
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=94.75 E-value=0.16 Score=30.37 Aligned_cols=104 Identities=21% Similarity=0.316 Sum_probs=64.2
Q ss_pred EEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCHHHCCC------CCC---------------------CCC
Q ss_conf 88988942-----------6899999998589989999807626012------466---------------------700
Q gi|254780808|r 8 VIVIGGGH-----------AGCEAAAVAAKLGASTALITHKTSTIGS------MSC---------------------NPA 49 (626)
Q Consensus 8 ViVIGaG~-----------AG~EAA~~~Ar~G~~v~L~~~~~~~~ae------l~C---------------------nps 49 (626)
|.|||+|. +|+.|..++-..|+.|.|+..||.++.- -++ =|+
T Consensus 10 vLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~~ 89 (1068)
T PRK12815 10 ILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRREKPDALLAT 89 (1068)
T ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 99989881531234465656999999999869989998898326208987444378858989999999997499989867
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH
Q ss_conf 2211224899999863039999998863148873078785553467878499999999999970899689800
Q gi|254780808|r 50 IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122 (626)
Q Consensus 50 ~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~ 122 (626)
+||--.=.|-.|+..-|-+ ++.+| ++|-+ -..+...--||++|.+.|.+.=...|.-.++..
T Consensus 90 ~GGqtaLnla~~L~~~GiL-----~k~~v--~llGt----~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s 151 (1068)
T PRK12815 90 LGGQTALNLAVKLLEAGIL-----EQYGV--ELLGT----NVEAIQKGEDRERFRALMKELGEPVPESEIVDS 151 (1068)
T ss_pred CCCHHHHHHHHHHHHCCCH-----HHCCC--EEECC----CHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCC
T ss_conf 7784799999999975977-----86596--49679----999998645999999999976999997052199
No 276
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.72 E-value=0.024 Score=36.16 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=32.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 57889889426899999998589989999807626012
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
-.|-|||+|-||--||++|++.|+.|.+++..+.--|.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl 161 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL 161 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE
T ss_conf 67999888951555889998689879982666777447
No 277
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.59 E-value=0.13 Score=31.10 Aligned_cols=108 Identities=22% Similarity=0.344 Sum_probs=66.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC-------------CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 578898894268999999985899-------------8999980762601246670022112248999998630399999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGA-------------STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV 72 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~-------------~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~ 72 (626)
-+|+|||||..|+|-|-.++.+-. +|.|+|.-|
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p---------------------------------- 201 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP---------------------------------- 201 (405)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC----------------------------------
T ss_conf 1899989882389999999999998765334786531899982571----------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCC-CCCCCCC
Q ss_conf 98863148873078785553467878499999999999970899689800-101120258811322203586-3344543
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNS-MIRCSTV 150 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~-~~~~~~v 150 (626)
|+| |. .-...+.++++.|++. +++|.-+ .|+++..+ +|.+..+. .+.+..+
T Consensus 202 --------~IL-----p~--------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tv 254 (405)
T COG1252 202 --------RIL-----PM--------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTV 254 (405)
T ss_pred --------HHC-----CC--------CCHHHHHHHHHHHHHC-CCEEECCCCEEEECCC-----CEEECCCCEEEECCEE
T ss_conf --------213-----58--------8889999999999987-9789869814897699-----1797558837762779
Q ss_pred CCCCCCCCHHHHHH--HHCCCCCCCC
Q ss_conf 33466431013444--3202332224
Q gi|254780808|r 151 VLTTGTFLRGVIHI--GKLKIPAGRM 174 (626)
Q Consensus 151 iiatGtfl~g~~~~--g~~~~~~gr~ 174 (626)
|-|+|.--+..+-. +.+....||.
T Consensus 255 vWaaGv~a~~~~~~l~~~e~dr~Grl 280 (405)
T COG1252 255 VWAAGVRASPLLKDLSGLETDRRGRL 280 (405)
T ss_pred EECCCCCCCHHHHHCCHHHHCCCCCE
T ss_conf 98577757866663270221348977
No 278
>PRK13748 putative mercuric reductase; Provisional
Probab=94.53 E-value=0.062 Score=33.25 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHHH
Q ss_conf 6567765403341566213304334666-66677899999874
Q gi|254780808|r 350 ELFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSAR 391 (626)
Q Consensus 350 ~L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~~ 391 (626)
..+..||| .+|++|-+|-+||.--..- |+.||.+|+.|+.-
T Consensus 386 ~Vd~~~rT-s~p~IYA~GDv~g~~~Lah~A~~eG~~aa~ni~g 427 (561)
T PRK13748 386 VIDQGMRT-SVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred ECCCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 24887430-7862999610167875568999999999998619
No 279
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.033 Score=35.17 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=4.4
Q ss_pred CCEEEEEEEE
Q ss_conf 3415662133
Q gi|254780808|r 360 ISGLFLAGQI 369 (626)
Q Consensus 360 ~~~LffAGQI 369 (626)
+||+|.||--
T Consensus 479 vpGvFAAGD~ 488 (520)
T COG3634 479 VPGVFAAGDC 488 (520)
T ss_pred CCCEEECCCC
T ss_conf 8723533753
No 280
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=94.45 E-value=0.077 Score=32.58 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=32.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|-|||||.-|+-=|+.+|+.|.+|.|+..+++.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~ 36 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALE 36 (180)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 89999788999999999967993999979989999
No 281
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=94.44 E-value=0.046 Score=34.17 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=38.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 9876357889889426899999998589989999807626012
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
||-+.-.|.|||+|==|+==|=-+|+.|+.|.||-.+++-++.
T Consensus 1 al~~~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r~eA~a~ 43 (508)
T TIGR02279 1 ALINVVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIRAEALAR 43 (508)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 9654106899646852103899998259848872288899999
No 282
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=94.43 E-value=0.054 Score=33.67 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=30.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|.|||+|+||.-+|..+...|..|.+||.|+
T Consensus 2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~ 32 (474)
T TIGR02732 2 VAIVGAGLAGLATAVELVDAGHEVEIYESRS 32 (474)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 5787256778999999973897278852433
No 283
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.43 E-value=0.081 Score=32.42 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=32.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|||||.-|+-=|..+|+.|++|.|+..+++.+
T Consensus 5 V~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~~ 38 (284)
T PRK07819 5 VGVVGAGQMGSGIAEVCARAGVDVLVFETTEEAA 38 (284)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 9998977899999999995799089997988999
No 284
>KOG1276 consensus
Probab=94.40 E-value=0.056 Score=33.60 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=29.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEE--EECCHHH
Q ss_conf 5788988942689999999858998999--9807626
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTAL--ITHKTST 40 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L--~~~~~~~ 40 (626)
-+|.|+|||.+|--|||.+||++.++.+ +|-.+-.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 6699988853688999999854899559998427866
No 285
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.39 E-value=0.089 Score=32.15 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|-|||+|.-|+-=|..+|+.|++|.|+..+++.+.
T Consensus 5 VaViGaG~mG~giA~~~a~~G~~V~l~D~~~~~l~ 39 (308)
T PRK06129 5 IAIVGAGLIGRAWAIVFARAGHRVRLWDADPAALA 39 (308)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 99977789999999999858993899989889999
No 286
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=94.31 E-value=0.11 Score=31.50 Aligned_cols=110 Identities=27% Similarity=0.425 Sum_probs=67.8
Q ss_pred EEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCHHHC------C----------CCCCC-----------CC
Q ss_conf 88988942-----------68999999985899899998076260------1----------24667-----------00
Q gi|254780808|r 8 VIVIGGGH-----------AGCEAAAVAAKLGASTALITHKTSTI------G----------SMSCN-----------PA 49 (626)
Q Consensus 8 ViVIGaG~-----------AG~EAA~~~Ar~G~~v~L~~~~~~~~------a----------el~Cn-----------ps 49 (626)
|.|||.|= +||=|..+|=.-|..|.|+..||.|+ | |-|=. |.
T Consensus 9 vLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPDgiL~t 88 (1089)
T TIGR01369 9 VLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDGILPT 88 (1089)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCC
T ss_conf 99966673113120230247899999987649579997588472338866866002525458888666531686600025
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCEEEHHHHCCCC
Q ss_conf 2211224899999863039999998863148873078785553467878-499999999999970899689800101120
Q gi|254780808|r 50 IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQENLDVIQGEVAGFN 128 (626)
Q Consensus 50 ~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqv-DR~~fs~~vt~~l~~~pni~i~~~eV~~l~ 128 (626)
|||==.=.|-=||+-.|-| ++.+| +|| |--+.|. .+. ||++|...|.+.=+..|-=.+++.+-..+.
T Consensus 89 ~GGQTALNlav~L~~~GVL-----~kYgV--~vL----GT~~eaI-~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~ 156 (1089)
T TIGR01369 89 LGGQTALNLAVELEESGVL-----EKYGV--EVL----GTPVEAI-KKAEDRELFREAMKEIGEPVPKSEIVHSVEEALK 156 (1089)
T ss_pred CCCHHHHHHHHHHHHCCCC-----HHHCC--EEE----CCCHHHH-HHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 7603577778866206851-----45291--785----2342435-2020279999999973899881100278899999
Q ss_pred C
Q ss_conf 2
Q gi|254780808|r 129 T 129 (626)
Q Consensus 129 ~ 129 (626)
.
T Consensus 157 ~ 157 (1089)
T TIGR01369 157 A 157 (1089)
T ss_pred H
T ss_conf 9
No 287
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.29 E-value=0.086 Score=32.27 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=33.8
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 9876357889889426899999998589989999807626
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
|++| |-|||||.=|+==|...|..|..|.|+..+|+.
T Consensus 1 MIkk---VAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~peA 37 (489)
T PRK07531 1 MIMK---AACIGGGVIGGGWAARFLLNGWDVAVFDPHPEA 37 (489)
T ss_pred CCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9767---999871886899999999579969999488789
No 288
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.06 E-value=0.088 Score=32.18 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 57889889426899999998589989999807626
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
.+|+|||||-||.-||+++|++|.+|.++|-.+..
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~ 52 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEP 52 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 98999995588999999999789985999536969
No 289
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.78 E-value=0.096 Score=31.92 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 7889889426899999998589989999807626
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
.|.|||||-||--|+-.+.++|+.|.-+.-||+.
T Consensus 167 kVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~~ 200 (510)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV 200 (510)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 2899746477799999996279789996587889
No 290
>PRK12831 putative oxidoreductase; Provisional
Probab=93.78 E-value=0.11 Score=31.62 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 6357889889426899999998589989999807626012
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
|+ |-|||+|-||--|||.||++|++|.+||..+.-=|.
T Consensus 141 kk--VAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~ 178 (464)
T PRK12831 141 KK--VAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGV 178 (464)
T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCE
T ss_conf 98--999897689999999999769917998278888980
No 291
>PRK04965 nitric oxide reductase; Provisional
Probab=93.76 E-value=0.12 Score=31.15 Aligned_cols=97 Identities=19% Similarity=0.308 Sum_probs=70.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk 87 (626)
|+|||||+-|||+|..++++|.+|.|+++.+.-+..+ .|
T Consensus 144 vvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~----------------------------l~------------- 182 (378)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL----------------------------MP------------- 182 (378)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----------------------------CC-------------
T ss_conf 9998983889999999996798899976667442211----------------------------78-------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 855534678784999999999999708996898001-0112025881132220358633445433346643101
Q gi|254780808|r 88 GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 88 GpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
...++.+++.++++ +|+++-++ |+++. ..+....|.+.+|..+.+..||+++|---+-
T Consensus 183 -------------~~~~~~l~~~l~~~-GV~~~~~~~v~~i~-~~~~~~~v~l~dG~~i~aD~Vv~a~Gv~Pnt 241 (378)
T PRK04965 183 -------------PEVSSRLQHRLTEM-GVHLLLKSQLQGLE-KTESGIRATLDDGRSIEVDAVIAAAGLRPNT 241 (378)
T ss_pred -------------HHHHHHHHHHHHHC-CEEEEECCEEEEEE-ECCCEEEEEECCCCEEECCEEEECCCCCCCH
T ss_conf -------------99999999999978-90999698899999-6599899998599799849999894775482
No 292
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=93.65 E-value=0.086 Score=32.26 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=28.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 57889889426899999998589989999807
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
-+|-|||+|-||--|||.++++ ..|.|||-.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~ 39 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD 39 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHCC-CCEEEEECC
T ss_conf 6168972562014457753235-524788606
No 293
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.38 E-value=0.17 Score=30.19 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 987635788988942689999999858998999980762601246
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
|.-|+ |.|||.|+-|.=-|..+|..|.+|.-+..+.+.+..|-
T Consensus 1 m~~kk--I~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~~kv~~l~ 43 (415)
T PRK11064 1 MSFET--ISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 99887--99988687789999999968894899989999999997
No 294
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.26 E-value=0.18 Score=29.99 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=32.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|-|||+|.-|+-=|+.+|+.|++|.|+..+++.+.
T Consensus 6 VaViGaGtMG~gIA~~~a~aG~~V~l~D~~~~~l~ 40 (503)
T PRK08268 6 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAA 40 (503)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99979688999999999938990899979989999
No 295
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=93.15 E-value=0.14 Score=30.81 Aligned_cols=34 Identities=44% Similarity=0.687 Sum_probs=31.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 3578898894268999999985899899998076
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+||.=|||||=-|.-||=.+|..|.||..-|-..
T Consensus 2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~ 35 (478)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYR 35 (478)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 7630687067166899999987299089821567
No 296
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=93.14 E-value=0.11 Score=31.56 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 788988942689999999858998999980762
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
-|-|||||=||-=+|=.|+|.|++|..|-=.|+
T Consensus 145 rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~ 177 (480)
T TIGR01318 145 RVAVIGAGPAGLACADILARAGVQVVVFDRHPE 177 (480)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 789977886025799987517855999747703
No 297
>KOG4405 consensus
Probab=92.89 E-value=0.11 Score=31.49 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---HHCCCCC
Q ss_conf 63578898894268999999985899899998076---2601246
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMS 45 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---~~~ael~ 45 (626)
.+|||||||-|+--+=-|.+++|.|.+|+-+..|+ ++.|-.+
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS 51 (547)
T KOG4405 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS 51 (547)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEE
T ss_conf 034389981798489999986003770586068655577640014
No 298
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.86 E-value=0.23 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=27.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 889889426899999998589989999807626
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
|-|||+|.=|+==|...+..|.+|.|+..+++.
T Consensus 10 VaVIGaG~MG~giAa~~a~~G~~V~l~D~~~~a 42 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAPGA 42 (321)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 999888788899999999479859999698889
No 299
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=92.75 E-value=0.1 Score=31.71 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHCCEEEE-CCHHHHCCCCHHHHHHHHHHHCCCEEEE-EEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8899999987543400100110-0012110235456567765403341566-2133043346666667789999987420
Q gi|254780808|r 316 EEIQHQFIRTIPGLEKVNIIRP-GYAIEYDYINPKELFPTLETKKISGLFL-AGQINGTTGYEEAAAQGLVAGINSARKS 393 (626)
Q Consensus 316 ~~~Q~rv~r~IPGLEnAef~R~-Gy~ieyd~~~P~~L~~tLe~k~~~~Lff-AGQI~GteGYeEAAAqGl~AGiNa~~~~ 393 (626)
..+-..++-|+|.|...+++|= | .|==-+.| =.|=+..-=+||||| +|= ||=|+---=|+|.+= |...+
T Consensus 313 e~v~~~~~emfP~l~r~r~~R~Wg-GivD~~pD---~SPIi~~tP~~nLylNcGW--g~GGFKAtPasG~~f---A~~lA 383 (407)
T TIGR01373 313 EHVLEAILEMFPILSRVRMLRSWG-GIVDVTPD---GSPIIGKTPVPNLYLNCGW--GTGGFKATPASGTVF---AHTLA 383 (407)
T ss_pred HHHHHHHHHHCCHHHHHEEEECCC-CEEECCCC---CCCCCCCCCCCCCEEECCC--CCCCEEEECCHHHHH---HHHHC
T ss_conf 999999987502233101112158-87840578---8876778888864465324--578803146127899---99970
Q ss_pred CCC-----CCCCCCCCCCHHHHHHHH
Q ss_conf 334-----565465321079999998
Q gi|254780808|r 394 NKL-----DCICFSRTDSYIGVMIDD 414 (626)
Q Consensus 394 ~~~-----~p~~l~R~eaYiGVlIDD 414 (626)
+++ .||.++|=++ |.||||
T Consensus 384 ~g~p~~~~apF~ldRF~~--G~lIDe 407 (407)
T TIGR01373 384 KGEPHDIAAPFTLDRFHS--GRLIDE 407 (407)
T ss_pred CCCCCCCCCCCCCCCCCC--CCEECC
T ss_conf 798765578720000133--640039
No 300
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=92.73 E-value=0.19 Score=29.81 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=35.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC
Q ss_conf 889889426899999998589989999807626012466
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC 46 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C 46 (626)
|.|||.|+-|.-.|..+|+.|.+|.-+..+.+.+..+-.
T Consensus 3 I~ViGlGyVGl~~a~~la~~G~~V~g~D~d~~~v~~ln~ 41 (185)
T pfam03721 3 IAVIGLGYVGLPTAVCLAEIGHDVVGVDINQSKIDKLNN 41 (185)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC
T ss_conf 999897874899999999489939999799899999862
No 301
>KOG2960 consensus
Probab=92.65 E-value=0.22 Score=29.40 Aligned_cols=118 Identities=22% Similarity=0.361 Sum_probs=68.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf 3578898894268999999985--899899998076260124667002211224899999863039999998----8631
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAK--LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD----AAGI 78 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD----~~~i 78 (626)
.-||+|||||-||--|||..++ -.++|.++|.. .+|-=|.---|||-.-| .|.+-|+ +-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S--------VaPGGGaWLGGQLFSAM-----vvRKPAhLFL~Eigv 142 (328)
T KOG2960 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS--------VAPGGGAWLGGQLFSAM-----VVRKPAHLFLQEIGV 142 (328)
T ss_pred CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEE--------ECCCCCCCCCCHHHHHH-----HHCCHHHHHHHHHCC
T ss_conf 04569987786654146663036998469999700--------36997434010154565-----424728888887389
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCC-----CEEEEEECCCC
Q ss_conf 488730787855534678784999999999999708996898001-011202588-----11322203586
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKN-----IISSIVMQDNS 143 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~-----~~~~v~~~~g~ 143 (626)
.| .-.|.-| +--.-.+|...+-..+.+-||+.+.... |.||+..++ ++.||.|.+..
T Consensus 143 pY----edegdYV----VVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtL 205 (328)
T KOG2960 143 PY----EDEGDYV----VVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTL 205 (328)
T ss_pred CC----CCCCCEE----EEEEHHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCCCEEEEEEEEEEEE
T ss_conf 73----4678779----995078899999999862786000010113555003686773688789740177
No 302
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=92.42 E-value=0.2 Score=29.63 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=42.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 8898894268999999985899899998076260124667-002211224899999863
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDAL 65 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aL 65 (626)
|-|||||-||--|||+|+++|.+|.+||..+.-=|.|.=- |.+.- -|..|-+||+.+
T Consensus 196 VAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRL-Pk~vld~EI~~i 253 (652)
T PRK12814 196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRL-PESVIDADIAPL 253 (652)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCC-CHHHHHHHHHHH
T ss_conf 9996837899999999997799069981588889867644863338-999999999999
No 303
>KOG1439 consensus
Probab=92.35 E-value=0.11 Score=31.60 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=32.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8763578898894268999999985899899998076
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+..|||||.|-|+--|=-+.++++-|-+|+.+--|+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~ 37 (440)
T KOG1439 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRND 37 (440)
T ss_pred CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCC
T ss_conf 9875149997377364100000257695899970788
No 304
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.29 E-value=0.28 Score=28.63 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=32.5
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 98763578898894268999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
||.| |.|||+|==|+=-|..+++.|..|.|+. ++...
T Consensus 1 ~mmk---I~IiGaGAvG~~~a~~L~~aG~~V~lv~-r~~~~ 37 (341)
T PRK08229 1 MMAR---ICVLGAGSIGCYLGGRLAAAGADVTLIG-RARIG 37 (341)
T ss_pred CCCE---EEEECCCHHHHHHHHHHHHCCCCEEEEE-CHHHH
T ss_conf 9477---9998967999999999985899879995-67899
No 305
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.27 E-value=0.25 Score=28.97 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCC-------CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999987420334565465321-------0799999988607877402442000122121157871366888787737883
Q gi|254780808|r 385 AGINSARKSNKLDCICFSRTD-------SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG 457 (626)
Q Consensus 385 AGiNa~~~~~~~~p~~l~R~e-------aYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~ 457 (626)
+||-......|.+-...++++ .+|.=+++.++.+|-..|-.+=.- --|+..-.|-++ | ...-+|=
T Consensus 326 ~GIA~~~a~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~--l~ri~~~~~~~~--l----~~~DlVI 397 (715)
T PRK11730 326 GGIAYQSASKGVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGV--LSTITPTLDYAG--F----KDVDVVV 397 (715)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHCCCCCCCCHH--H----CCCCEEE
T ss_conf 9999999957995799978999999999999999999986489987999999--956874154024--3----3588899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999999999987633
Q gi|254780808|r 458 ERRQKRFAKYIQEYNFLRSLLKSL 481 (626)
Q Consensus 458 ~~r~~~~~~k~~~~~~~~~~l~~~ 481 (626)
+.-.+.+.-|++-+.++...+...
T Consensus 398 EAV~E~l~~K~~vf~~l~~~~~~~ 421 (715)
T PRK11730 398 EAVVENPKVKAAVLAEVEQKVRED 421 (715)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 854365889999999998655875
No 306
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.14 E-value=0.32 Score=28.21 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=19.4
Q ss_pred CEEEECCCHHHHHHHHHHHH----CCCCEEEEE
Q ss_conf 78898894268999999985----899899998
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAK----LGASTALIT 35 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar----~G~~v~L~~ 35 (626)
.|++||||. |+=..+-+|| .|.+|..+-
T Consensus 100 ~vv~VgGGv-G~Ap~~piakalk~~Gn~v~~I~ 131 (760)
T PRK12778 100 TVVCAGGGV-GVAPMLPIVQALKAAGNRVITVL 131 (760)
T ss_pred EEEEEECCE-EHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 399995869-68987999999998699599998
No 307
>KOG2853 consensus
Probab=92.03 E-value=0.18 Score=30.00 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=33.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHH----HCCCCEEEEECCHHHCCCCCCCCCCCCC
Q ss_conf 6357889889426899999998----5899899998076260124667002211
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAA----KLGASTALITHKTSTIGSMSCNPAIGGL 53 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~A----r~G~~v~L~~~~~~~~ael~Cnps~gg~ 53 (626)
..-||+|||||..|+--|+.+- +.|.+|..+|-+ |+.++-+--=|+||+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd-dtytqssT~lSvGGi 137 (509)
T KOG2853 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD-DTYTQSSTMLSVGGI 137 (509)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCEEEEECCE
T ss_conf 43678998888652265899988764379439999626-752100114555444
No 308
>PRK10262 thioredoxin reductase; Provisional
Probab=91.99 E-value=0.18 Score=29.92 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHCCCEEEEEEEEECCCH--HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5456567765403341566213304334--66666677899999874203345
Q gi|254780808|r 347 NPKELFPTLETKKISGLFLAGQINGTTG--YEEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 347 ~P~~L~~tLe~k~~~~LffAGQI~GteG--YeEAAAqGl~AGiNa~~~~~~~~ 397 (626)
++...+.+.+ -.+||+|.||-|++-.+ -.-|.+.|-+|+++|.+++.+..
T Consensus 267 d~~~~~~~~~-TsipGifAaGDv~~~~~~qv~~Avg~G~~Aa~~a~~yL~~~~ 318 (321)
T PRK10262 267 QSGIHGNATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLA 318 (321)
T ss_pred CCCCCCCCCC-CCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 8887678776-898998999947789887687807858999999999997541
No 309
>KOG0685 consensus
Probab=91.89 E-value=0.3 Score=28.36 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf 635788988942689999999858998-99998
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGAS-TALIT 35 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~ 35 (626)
.+--|+|||||.||.-||-.+-..|.. ++++|
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE 52 (498)
T KOG0685 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE 52 (498)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 796499989856779999999982896489997
No 310
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.65 E-value=0.35 Score=27.92 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHCCCC
Q ss_conf 9876357889889426899999998589-9899998076260124
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTSTIGSM 44 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~~ael 44 (626)
||+ |+|||+|.=|+=+|+-+|+.| ..|.+..-.+++.+..
T Consensus 1 m~~----ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i 41 (389)
T COG1748 1 MMK----ILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARI 41 (389)
T ss_pred CCC----EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 972----89989866679999999857896299984888899998
No 311
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.61 E-value=0.35 Score=27.88 Aligned_cols=55 Identities=35% Similarity=0.421 Sum_probs=38.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf 88988942689999999858998999980762601246-670022112248999998
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREID 63 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~ 63 (626)
|-|||||-||-=|||+||++|+.|.+||..+.-=|.|. .-|.+. +-+-.|-+|++
T Consensus 140 VAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yR-LP~~vl~~ei~ 195 (560)
T PRK12771 140 VAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYR-LPRDVLDAEIQ 195 (560)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCC-CCHHHHHHHHH
T ss_conf 999897789999999999769858996767888988835687544-75899999999
No 312
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=91.43 E-value=0.4 Score=27.55 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCC---CCC
Q ss_conf 876357889889426899999998589--989999807626012466---700
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSC---NPA 49 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~C---nps 49 (626)
.+++|||++||||--|+--++-+++.- .++.|+| |.+.+|+.+- |||
T Consensus 1 ~~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~E-rl~~~A~eSS~~wNNA 52 (489)
T pfam06039 1 EHDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFE-RLDGVAQESSNPWNNA 52 (489)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHCCCCCCC
T ss_conf 996102999996288999999999759987489998-1475255507886655
No 313
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.30 E-value=0.37 Score=27.75 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=36.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC
Q ss_conf 8898894268999999985899899998076260124667
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn 47 (626)
|.|||.|+=|.-.|..+|..|.+|.-+..+++.+..|-+.
T Consensus 3 I~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~~~i~~l~~g 42 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCC
T ss_conf 9998978779999999994899489998999999999779
No 314
>KOG3855 consensus
Probab=91.23 E-value=0.17 Score=30.18 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEHHHH-CC-------CCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 49999999999997089968980010-11-------20258811322203586334454333466
Q gi|254780808|r 99 DRELYRLAMQREILSQENLDVIQGEV-AG-------FNTEKNIISSIVMQDNSMIRCSTVVLTTG 155 (626)
Q Consensus 99 DR~~fs~~vt~~l~~~pni~i~~~eV-~~-------l~~~~~~~~~v~~~~g~~~~~~~viiatG 155 (626)
|--.+|-+.-......+||+|+..+- .+ +..+++...-+.+.+|..+.++-.|-+-|
T Consensus 150 ~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg 214 (481)
T KOG3855 150 DNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADG 214 (481)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEECEEECCCC
T ss_conf 47799888877764147624311453232012345678998653789932684544100404545
No 315
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=91.09 E-value=0.37 Score=27.77 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=32.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 8898894268999999985899899998076260124
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
|.|||||-=|+=-|..+|+.|..|.|+..+++.+.++
T Consensus 3 I~IiGaG~wGtAla~~la~n~~~V~l~~r~~~~~~~i 39 (159)
T pfam01210 3 IAVLGAGSWGTALAKVLARNGHEVRLWGRDEELIEEI 39 (159)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
T ss_conf 9999969999999999998799899999043666778
No 316
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=91.08 E-value=0.68 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.8
Q ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8894268999999985899899998076260
Q gi|254780808|r 11 IGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 11 IGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
+++..+|.+|+.++-..|..|.|+..+|.++
T Consensus 12 ~efdysG~qac~aLkeeg~~vvlvnsnpAti 42 (400)
T COG0458 12 AEFDYSGTQACKALKEEGYGVVLVNSNPATI 42 (400)
T ss_pred EEECHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 1114367899999986697599972887212
No 317
>PRK11749 putative oxidoreductase; Provisional
Probab=91.00 E-value=0.36 Score=27.80 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=31.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 889889426899999998589989999807626012
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
|.|||||-||.-||+.||++|++|.+||..+.--|.
T Consensus 143 VAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGl 178 (460)
T PRK11749 143 VAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL 178 (460)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE
T ss_conf 999896789999999999769847997047878755
No 318
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.87 E-value=0.42 Score=27.36 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=36.3
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH---CCCCCCCCC
Q ss_conf 9876357889889426899999998589989999807626---012466700
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---IGSMSCNPA 49 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~---~ael~Cnps 49 (626)
||+ |.|||||-=|+=-|..+|+-|.+|.|+..+.+. |-+--+||.
T Consensus 1 Mmk----I~ViGaGawGtAlA~~la~n~~~V~lw~r~~~~~~~In~~~~n~~ 48 (325)
T PRK00094 1 MMK----IAVLGAGSWGTALAILLARNGHDVVLWGRDPEHAAEINTDRENPR 48 (325)
T ss_pred CCE----EEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCC
T ss_conf 988----999898999999999999789978999838999999996498865
No 319
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.77 E-value=0.3 Score=28.40 Aligned_cols=39 Identities=23% Similarity=0.148 Sum_probs=25.1
Q ss_pred HHHHHHHC-----CCEEEEEEEEECCCHHHH-HHHHHHHHHHHHH
Q ss_conf 67765403-----341566213304334666-6667789999987
Q gi|254780808|r 352 FPTLETKK-----ISGLFLAGQINGTTGYEE-AAAQGLVAGINSA 390 (626)
Q Consensus 352 ~~tLe~k~-----~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~ 390 (626)
+..+||.. +|++|..|-++|.-=--- |.+||++|-=+.+
T Consensus 457 De~~rTnv~g~~~v~hIYAIGDV~G~~mLAHvAs~EGi~ave~I~ 501 (673)
T PTZ00153 457 DDHLQVKMEDNEIYDHIFCIGDANGKQMLAHTASHQALKVIDFIE 501 (673)
T ss_pred CCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 996375688886677879998568852568799986799999872
No 320
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.77 E-value=1.2 Score=24.20 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=53.6
Q ss_pred CCCCCCC-----EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9876357-----88988942-68999999985899899998076260124667002211224899999863039999998
Q gi|254780808|r 1 MINRSYD-----VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD 74 (626)
Q Consensus 1 m~~~~~d-----ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD 74 (626)
||++-|| |+|-||+- =|-..|.++|+.|++|.+.-.+.+..- .++.|+...|+..
T Consensus 1 mm~~lf~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~--------------~~~~~l~~~g~~~----- 61 (278)
T PRK08277 1 MMNNLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE--------------AVVEEIKANGGEA----- 61 (278)
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--------------HHHHHHHHCCCEE-----
T ss_conf 940063889998999586748999999999987998999979889999--------------9999998459909-----
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8631488730787855534678784999999999999708996898
Q gi|254780808|r 75 AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 75 ~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
..+ .+= + .|.+.-.+.+.+.++.+-.|+++
T Consensus 62 -~~~-------------~~D-v-td~~~v~~~~~~~~~~~G~iDiL 91 (278)
T PRK08277 62 -IAL-------------KAD-V-LDKESLEQARQQILKDFGRCDIL 91 (278)
T ss_pred -EEE-------------ECC-C-CCHHHHHHHHHHHHHHHCCCCEE
T ss_conf -999-------------824-8-99999999999999984998889
No 321
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.50 E-value=0.13 Score=30.91 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCC--CCHHHHHH------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 000000001232--00147776------402457541443235642225532123356764334520130157877
Q gi|254780808|r 235 NRQIECGITRTN--LETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT 302 (626)
Q Consensus 235 ~~q~~~~~~~t~--~~~~~~~~------~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~ 302 (626)
..+++|+.+++. ...+.++. .+++.+++|.| |||||++..|+++..+|.. ++|+|+..
T Consensus 188 ~dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feG---------C~pIE~~a~rg~~~lrfgp-~kPvGL~d 253 (434)
T PRK05335 188 ADYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEG---------CLPIEVMAERGRETLRFGP-MKPVGLED 253 (434)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCHHHHHHCCCCCEECCC-CCCCCCCC
T ss_conf 552238998799889998752002035665445766578---------8778877414765320267-65667778
No 322
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=90.48 E-value=0.4 Score=27.52 Aligned_cols=421 Identities=21% Similarity=0.231 Sum_probs=188.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEE----CCHHHCCCCCCCCCCCC------------CCHHHHHHHHHHHH
Q ss_conf 357889889426899999998589--9899998----07626012466700221------------12248999998630
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLG--ASTALIT----HKTSTIGSMSCNPAIGG------------LGKGHLVREIDALD 66 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~----~~~~~~ael~Cnps~gg------------~akg~L~~Ei~aLg 66 (626)
.-|++|||||=||--||.++|..+ ++|+|+. ||-.+++-=--|-|+-+ .+=|-=.+|=|+..
T Consensus 3 ~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKVYPMRSHTVaAEGGsAAV~~D~DSld~H~~DTV~GGDWLC~QD~Ve 82 (585)
T TIGR01176 3 QADIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTKDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (585)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 32367883784468999999840898537898511577641111355311210564124541445345664322021899
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCCC----CC-----------CCHHHHHHHHHHHHH--HHHHHHCCCCCEEEHH-HHCC
Q ss_conf 399999988631488730--78785----55-----------346787849999999--9999970899689800-1011
Q gi|254780808|r 67 GLMGRVADAAGIQFRVLN--VKKGP----AV-----------RGPRTQADRELYRLA--MQREILSQENLDVIQG-EVAG 126 (626)
Q Consensus 67 g~m~~~aD~~~i~~r~ln--~skGp----Av-----------~alraqvDR~~fs~~--vt~~l~~~pni~i~~~-eV~~ 126 (626)
-.+..+..+ -||.-.-- =|+=| +| |= | +|+-.|.-- .-.++-..|.|.=..+ =|++
T Consensus 83 ~FV~~ap~E-~~QlE~WGCPWSRk~dG~V~VR~FGGMK~~RTWF--A-ADKTGFH~LHTLFQ~~l~y~~i~R~DE~F~~~ 158 (585)
T TIGR01176 83 YFVAEAPKE-LVQLEHWGCPWSRKPDGRVNVRRFGGMKVERTWF--A-ADKTGFHLLHTLFQTSLKYPQIKRYDEYFVVD 158 (585)
T ss_pred HHHHHCCHH-HHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEE--C-CCCCCHHHHHHHHHHHCCCCCCEEHHCEEEEE
T ss_conf 987413345-6643127888774789857762268812210010--1-12234268899998630563310001013555
Q ss_pred CCCCCCCEEEEE-----ECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCCC
Q ss_conf 202588113222-----0358633445433346643101344432023322247511133--100001011200544445
Q gi|254780808|r 127 FNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS--LFNSFMKFDFDTGRLKTG 199 (626)
Q Consensus 127 l~~~~~~~~~v~-----~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~--ls~~l~~~~~~~~r~ktg 199 (626)
|++|++.|.|.. +..-..+.|.+||+|||- +||.......+ .+-+=+.+. |..|
T Consensus 159 lLVDdG~v~GLvAi~~~~G~l~~I~A~aVvlaTGG--------------aGRVy~~~TN~~I~TGDGMa~A-----~~~G 219 (585)
T TIGR01176 159 LLVDDGRVRGLVAIELAEGRLVTIKADAVVLATGG--------------AGRVYRFNTNGGIVTGDGMALA-----FRHG 219 (585)
T ss_pred EEEECCEEEEEEEEEECCCEEEEEEEEEEEEECCC--------------CCCCEEECCCCCCCCCCHHHHH-----HHCC
T ss_conf 57517735557888633670688874278993089--------------8730331058873126148999-----8478
Q ss_pred CCCHHHHCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH--HCCCCCC--CCCCCCCCCCCC
Q ss_conf 44101100001344321147876687774--35657800000000123200147776--4024575--414432356422
Q gi|254780808|r 200 TPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIECGITRTNLETHRIIM--ENIKHSA--IYSGDIKSYGPR 273 (626)
Q Consensus 200 tppri~~~sidf~~~e~q~~d~~~~~~s~--~~~~~~~~q~~~~~~~t~~~~~~~~~--~~~~~~~--~~~g~~~~~gpr 273 (626)
.|= =|.+.+-| -..-.||+= +++-. . -.--.--|+.-.+-+. ......| .+--+-...|||
T Consensus 220 ~PL-~DMEFVQY--------HPTGLP~tGIL~TE~~--R--~EGG~l~NK~GYRYLQDY~~G~~TP~G~Pk~k~MELGPR 286 (585)
T TIGR01176 220 VPL-RDMEFVQY--------HPTGLPGTGILMTEGC--R--GEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPR 286 (585)
T ss_pred CCC-CCCCCEEE--------CCCCCCCCCHHCCCCC--C--CCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 883-32430100--------6889886521000334--4--377667816874130005777888888875342046886
Q ss_pred CCCC----CCCCCCCCCCCCCC-CCE--EEECCCCCCEEEECCCCCCCCHH-HHHHHHHHHHHHHHCCEEEECCHHHHCC
Q ss_conf 2553----21233567643345-201--30157877645434776668988-9999998754340010011000121102
Q gi|254780808|r 274 YCPS----IEDKIVRFGERNGH-QIF--LEPEGLNTDVVYPNGISTALPEE-IQHQFIRTIPGLEKVNIIRPGYAIEYDY 345 (626)
Q Consensus 274 ycPs----ie~k~~~~~~~p~h-~Vq--LrpE~~~~~~~n~vGFqTsL~~~-~Q~rv~r~IPGLEnAef~R~Gy~ieyd~ 345 (626)
-=.| =|..-=++=+.|+. ||+ ||.=|.+ =++.+||+= |=-+-...|-=..+-.=+||- +||..
T Consensus 287 Dk~SQAF~HE~~KG~Ti~~P~GdVVyLDLRHLG~~-------~l~~~LPFi~ELak~Y~~vDPv~E~iPvRP~--vHY~M 357 (585)
T TIGR01176 287 DKVSQAFWHEHRKGNTIDTPYGDVVYLDLRHLGED-------LLDERLPFICELAKAYVHVDPVKEPIPVRPT--VHYTM 357 (585)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHH-------HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC--EEEEE
T ss_conf 53024457464178722589897788500442378-------8752073578998863266873245368860--24330
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEEECC----------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 354565677654033415662133043----------3466666677899999874203345654653210799999988
Q gi|254780808|r 346 INPKELFPTLETKKISGLFLAGQINGT----------TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL 415 (626)
Q Consensus 346 ~~P~~L~~tLe~k~~~~LffAGQI~Gt----------eGYeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDL 415 (626)
= --.-+..=+|+ +||||.+|--.-| ----|=-.=|-+||-.|+-++-.....--.-+.| |--=+
T Consensus 358 G-Gi~Td~~c~T~-~~GLfA~GE~asV~l~GANRLGSNSLaEl~VFG~~AG~~A~~~AA~~~~~~rGp~~A-i~AQ~--- 431 (585)
T TIGR01176 358 G-GIETDINCETR-IKGLFAVGECASVGLHGANRLGSNSLAELVVFGRLAGEKAAERAARAKKSNRGPESA-IRAQA--- 431 (585)
T ss_pred C-CEEECCCCCCC-CCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHH---
T ss_conf 6-54457876411-463344022013311353424300367899987766789999998623677787899-99999---
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 6078774024420001221211578713668887877378838------9999999999999999998763368832
Q gi|254780808|r 416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE------RRQKRFAKYIQEYNFLRSLLKSLVLTSK 486 (626)
Q Consensus 416 itkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~------~r~~~~~~k~~~~~~~~~~l~~~~~~p~ 486 (626)
|---.|-+ +++-|+...++|...+--++|.-=+ ..-..+++-.+++..+.++.+...++-+
T Consensus 432 ---------~~~~~Rl~-~~~~~~G~GgE~~A~IR~~M~~t~E~~~GIYR~~~~~~~~i~~l~~L~ERf~~~~I~D~ 498 (585)
T TIGR01176 432 ---------RTVELRLE-RLLSQEGQGGENWADIRAEMGATLESGCGIYRDEELLQKTIDKLAELQERFKRVGIDDK 498 (585)
T ss_pred ---------HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf ---------99999999-99862588865166888999888985077446826799999999986542226656205
No 323
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=90.44 E-value=0.21 Score=29.45 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=37.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC---CCCCCC
Q ss_conf 63578898894268999999985899899998076260---124667
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---GSMSCN 47 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~---ael~Cn 47 (626)
+.-||+|||||.+|.+||-.+--+|..+.++..+.|++ .++-|+
T Consensus 167 ~~g~~~~~ggg~~g~~~~~~~~g~g~~~~~~d~n~d~l~~l~~~f~~ 213 (372)
T TIGR00518 167 EPGDVTILGGGVVGTNAAKMAVGLGADVTILDLNVDRLRQLDDLFGG 213 (372)
T ss_pred CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 64526786076112102344313675156762354665554565312
No 324
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.23 E-value=0.45 Score=27.12 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 87635788988942689999999858998999980762
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
++++ |.|+|.|-.|.-+|-.|.++|++|.++.-+..
T Consensus 16 l~~k--vlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~ 51 (476)
T PRK00141 16 LRGR--VLVAGAGVSGLGIAKMLSELGCDVVVADDNET 51 (476)
T ss_pred HCCC--EEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6998--89992278899999999978997999989987
No 325
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=90.22 E-value=0.31 Score=28.26 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=16.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 88988942689999999858998999980
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITH 36 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~ 36 (626)
|+|||+|..|++.|..+|+...+|.|.+-
T Consensus 186 VlVVG~GnSg~DIA~els~~a~~V~ls~R 214 (532)
T pfam00743 186 VLVIGLGNSGGDIAVELSRTAAQVFLSTR 214 (532)
T ss_pred EEEECCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf 99978889841059999852786899970
No 326
>KOG1336 consensus
Probab=90.15 E-value=1.5 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=24.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 788988942689999999858998999980
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITH 36 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~ 36 (626)
.|+|||||-+|+=|+-.+-..|....+.-+
T Consensus 76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~ 105 (478)
T KOG1336 76 HFVIVGGGPGGAVAIETLRQVGFTERIALV 105 (478)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 499976882033557667752887660787
No 327
>KOG2415 consensus
Probab=89.97 E-value=0.38 Score=27.67 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=26.1
Q ss_pred CCCCEEEECCCHHHHHHHHHH------HHCCCCEEEEEC
Q ss_conf 635788988942689999999------858998999980
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVA------AKLGASTALITH 36 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~------Ar~G~~v~L~~~ 36 (626)
..|||+|||||-||--||..+ +..-++|.++|.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEK 113 (621)
T KOG2415 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEK 113 (621)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 040589988881567888889988876078368999961
No 328
>KOG0399 consensus
Probab=89.81 E-value=0.48 Score=26.93 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=19.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012320014777640245754144323564222553
Q gi|254780808|r 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS 277 (626)
Q Consensus 241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPs 277 (626)
...||.+....++.-.....-+..|-++-..|--|-|
T Consensus 542 afgYt~E~v~mll~pMa~~gkEalgsMGnDaplA~LS 578 (2142)
T KOG0399 542 AFGYTSEQVQMLLEPMAKQGKEALGSMGNDAPLACLS 578 (2142)
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHC
T ss_conf 6167388899999988745875424567876100105
No 329
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.76 E-value=0.5 Score=26.85 Aligned_cols=79 Identities=11% Similarity=-0.063 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 33456546532107999999886078774024420001221211578713668887877378838999999999999999
Q gi|254780808|r 394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF 473 (626)
Q Consensus 394 ~~~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~ 473 (626)
...++-.+.|.-.+|.=++|.++.+|--.+--.= ..=-||..-.|-. --....+|=+.-.+.+.-|++-+.+
T Consensus 339 ~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~--~~l~~i~~~~~~~------~~~~~DlVIEAv~E~~~~K~~v~~~ 410 (706)
T PRK11154 339 KDINPQGINHALKYSWDLLDKKVKRRHMTPAERD--KQMALISGTTDYR------GFKHADLVIEAVFEDLALKQQMVAD 410 (706)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--HHHHCEEEECCHH------HHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 9799999999999889999999861899989999--9862241004412------3156887999714528889999999
Q ss_pred HHHHHHH
Q ss_conf 9998763
Q gi|254780808|r 474 LRSLLKS 480 (626)
Q Consensus 474 ~~~~l~~ 480 (626)
+-..+..
T Consensus 411 le~~~~~ 417 (706)
T PRK11154 411 VEQNCAE 417 (706)
T ss_pred HHHHCCC
T ss_conf 9964798
No 330
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.68 E-value=0.62 Score=26.18 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=35.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 88988942689999999858998999980762601246
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
|+|||||-=|..-|=+|+..|..|.+++.+++.+.++.
T Consensus 3 IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~ 40 (455)
T PRK09496 3 IIILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQ 40 (455)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 99999888999999999868997999989999999988
No 331
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.34 E-value=0.67 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=29.9
Q ss_pred CCC-CCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCH
Q ss_conf 987-635788988942689999999858998--99998076
Q gi|254780808|r 1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGAS--TALITHKT 38 (626)
Q Consensus 1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~ 38 (626)
||+ |.-.|.|||+|+-|+-.|+.++..|.- ..|+-.+.
T Consensus 1 ~m~~k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~ 41 (315)
T PRK00066 1 MMKKKHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 98878984999997988999999998669988899980898
No 332
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.23 E-value=0.66 Score=25.98 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=34.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 9876357889889426899999998589989999807626012
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
|-.|+ |.|+|.|..|.-||-.+.+.|+.|..+..+++.+.+
T Consensus 1 ~~~Kk--vlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~~~~~~ 41 (418)
T PRK00683 1 MGLQR--VVVLGLGVTGKSVARFLAQKGVYVIGVDNSLEALQS 41 (418)
T ss_pred CCCCE--EEEEEECHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 99866--999808887999999999782989998298145454
No 333
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.21 E-value=0.79 Score=25.41 Aligned_cols=39 Identities=33% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 98763578898894268999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|+-++ |-|||||.=|+==|..+|.-|+.|.|+..+++.+
T Consensus 1 ~~i~k--v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~ 39 (307)
T COG1250 1 MEIKK--VAVIGAGVMGAGIAAVFALAGYDVVLKDISPEAL 39 (307)
T ss_pred CCCCE--EEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 97407--9997246020999999973499569995898999
No 334
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.13 E-value=0.63 Score=26.12 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 889889426899999998589989999
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
|.|||+|==||.+|..||+.|+..+-+
T Consensus 2 V~IvG~GGLG~~~a~~La~aGvg~i~l 28 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKL 28 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 899876788999999999818973999
No 335
>KOG2304 consensus
Probab=89.05 E-value=0.51 Score=26.77 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=34.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 76357889889426899999998589989999807626012
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
++.-.|.|||||+-||--|--+|..|..|.|+..+-+.+.+
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~ 49 (298)
T KOG2304 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSR 49 (298)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHH
T ss_conf 45662478756643203999988519946985477789999
No 336
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=89.02 E-value=0.37 Score=27.75 Aligned_cols=95 Identities=21% Similarity=0.392 Sum_probs=70.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK 87 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk 87 (626)
++|||||-=|.|.|=..||+|++|.|+.-.- . +|.+
T Consensus 184 L~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~-~----------------ll~~--------------------------- 219 (494)
T TIGR02053 184 LVVIGGGAIGVELAQAFARLGSEVTILQRSE-R----------------LLPR--------------------------- 219 (494)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEHHHHHH-H----------------HCCC---------------------------
T ss_conf 8888652899999999985776140367998-6----------------4464---------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH--HCCCCCCC-CCEEE-EEE-CCCCCCCCCCCCCCCCCC
Q ss_conf 855534678784999999999999708996898001--01120258-81132-220-358633445433346643
Q gi|254780808|r 88 GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE--VAGFNTEK-NIISS-IVM-QDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 88 GpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e--V~~l~~~~-~~~~~-v~~-~~g~~~~~~~viiatGtf 157 (626)
|-+-+ |..|++.|.+...|+|+..- +.++...+ +.... +.. .....+.+....+|||=-
T Consensus 220 ----~epei-------s~~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~ 283 (494)
T TIGR02053 220 ----EEPEI-------SAAVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRR 283 (494)
T ss_pred ----CCHHH-------HHHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCC
T ss_conf ----68889-------99999984147877998044035544452798189998558987457431125552787
No 337
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.98 E-value=0.6 Score=26.26 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=29.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 889889426899999998589989999807626
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
|.|||+|-.|+..|-++++.|.+|.|+--.|..
T Consensus 178 V~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 178 VLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999898703999999997306717898517975
No 338
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.79 E-value=0.83 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=33.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 987635788988942689999999858998999980762601
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|..| |.|||+|==||=-|+.|++.|..|.|+...+.++.
T Consensus 1 m~Mk---I~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~~~~~ 39 (305)
T PRK05708 1 MSMT---WHILGAGSLGSLWACRLARAGLPVRLILRDRQRLA 39 (305)
T ss_pred CCCE---EEEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9988---99988239999999999848997399994789999
No 339
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.41 E-value=0.73 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65403341566213-3043346666667789999987420
Q gi|254780808|r 355 LETKKISGLFLAGQ-INGTTGYEEAAAQGLVAGINSARKS 393 (626)
Q Consensus 355 Le~k~~~~LffAGQ-I~GteGYeEAAAqGl~AGiNa~~~~ 393 (626)
++| .+|++|.||- ++|-.=-++|.+.|-.|+....+++
T Consensus 613 ~~T-s~pgVFAgGD~v~G~stVV~Ai~~Gr~AA~aId~yL 651 (654)
T PRK12769 613 YQT-SNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred CCC-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 448-999989807856682899999999999999999986
No 340
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=88.17 E-value=0.81 Score=25.32 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=24.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE-EEEEC
Q ss_conf 889889426899999998589989-99980
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAST-ALITH 36 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v-~L~~~ 36 (626)
|.|||+|=-|||.|..||++|+.. .|+-.
T Consensus 4 VlivG~GglG~~~~~~La~~Gvg~i~lvD~ 33 (134)
T pfam00899 4 VLVVGAGGLGSPAAEYLARAGVGKLTLVDF 33 (134)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999898889999999999938974999989
No 341
>KOG2665 consensus
Probab=87.67 E-value=0.55 Score=26.50 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=58.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCCC---CCC--CHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 7635788988942689999999858--99899998076260124667002---211--22489999986303-9999998
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAI---GGL--GKGHLVREIDALDG-LMGRVAD 74 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~ael~Cnps~---gg~--akg~L~~Ei~aLgg-~m~~~aD 74 (626)
..+||.+|||||--|+-.|-++.=+ +.+|.++|--.+---..+--||= -|+ -.|-|+.-+=.=|- +.-.-.|
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred CCCCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEEEEEEEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf 56554799888432225567776317872577540001021551256665056434417766000110342999999852
Q ss_pred HHHHHHHHHCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
Q ss_conf 863148873078785---5534678784999999999999708996898001
Q gi|254780808|r 75 AAGIQFRVLNVKKGP---AVRGPRTQADRELYRLAMQREILSQENLDVIQGE 123 (626)
Q Consensus 75 ~~~i~~r~ln~skGp---Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~e 123 (626)
+-.|.|+- -|- |+..--..-=..+|++..++ .-|.|..++++
T Consensus 126 e~~IpyKk----~GKLIVAt~~~EiprLd~L~~~g~qN---~v~glrmieg~ 170 (453)
T KOG2665 126 EKKIPYKK----TGKLIVATESEEIPRLDALMHRGTQN---GVPGLRMIEGS 170 (453)
T ss_pred HCCCCHHH----CCEEEEEECHHHCCHHHHHHHHHHHC---CCCCEEEECCC
T ss_conf 40797345----06389971721150389999765225---99970653121
No 342
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.61 E-value=1.2 Score=24.06 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=35.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCC---CCC
Q ss_conf 76357889889426899999998589--989999807626012466---700
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSC---NPA 49 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~C---nps 49 (626)
+++|||++||||--|+--|+-+++.- .++.|+| +.+.+|+.|- |||
T Consensus 4 ~~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~E-rl~~~A~ESS~~wNNA 54 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVE-RLDSPAIESSNERNNA 54 (497)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHCCCCCCCC
T ss_conf 77778899895288999999999769987489998-1475454407886655
No 343
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.53 E-value=0.98 Score=24.73 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=27.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 578898894268999999985899899998076260
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
-.|.|||+|=-||.+|..||+.|+...-+- +.|.+
T Consensus 33 s~VlivG~GGlG~~~~~~La~aGvg~i~lv-D~D~v 67 (245)
T PRK05690 33 ARVLVVGLGGLGCAAAQYLAAAGVGTLTLV-DFDTV 67 (245)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCCC
T ss_conf 978998777778999999998599659999-68867
No 344
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=87.49 E-value=0.51 Score=26.75 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=3.5
Q ss_pred CCEEEEEEEE
Q ss_conf 3415662133
Q gi|254780808|r 360 ISGLFLAGQI 369 (626)
Q Consensus 360 ~~~LffAGQI 369 (626)
+||||.||-+
T Consensus 503 I~GLYAAGE~ 512 (549)
T PRK12834 503 LPGLYAAGEA 512 (549)
T ss_pred ECCEEECCCC
T ss_conf 3880746022
No 345
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.41 E-value=0.99 Score=24.73 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=25.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEE-EEEC
Q ss_conf 578898894268999999985899899-9980
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTA-LITH 36 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~ 36 (626)
-.|.|||+|==||.+|..||+.|+... |+..
T Consensus 28 s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~ 59 (209)
T PRK08644 28 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDF 59 (209)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 96899888788999999999938981899889
No 346
>pfam07350 DUF1479 Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.
Probab=87.35 E-value=1.5 Score=23.38 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9999999999708996898001011202588113222-0358633445433346643101344
Q gi|254780808|r 102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMIRCSTVVLTTGTFLRGVIH 163 (626)
Q Consensus 102 ~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~-~~~g~~~~~~~viiatGtfl~g~~~ 163 (626)
.+.+.+.+.|+.++ .+.+++.++..+.++- +....+..+..-++++--||+.+-|
T Consensus 90 ~w~~el~~Yi~~N~-------~f~~~~~~~pqiy~lYWS~aQv~AR~hp~m~~~q~fLn~LW~ 145 (408)
T pfam07350 90 AWKQEIVDYLEANP-------DFKGFPPDKPQIYELYWSKAQVEARQHPNMLATQRFLNSLWH 145 (408)
T ss_pred HHHHHHHHHHHCCC-------CCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 99999999997097-------667899999737873068889876329889999999986441
No 347
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=87.33 E-value=0.93 Score=24.92 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 88988942689999999858998999980762601246
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
|+|||.|--|..-|-.+.+.| +|.+++.+++.+-++.
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~ 37 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELR 37 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHH
T ss_conf 999878889999999998089-9999999879987788
No 348
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.95 E-value=1.2 Score=24.20 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+++ |.|||||..+..=+-.+.+.|+.|.++....
T Consensus 10 gk~--vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~~ 43 (202)
T PRK06718 10 NKR--VVIVGGGKVAGRRAITLLKYGAHITVISPEI 43 (202)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 986--9998898999999999986899699986999
No 349
>PTZ00325 malate dehydrogenase; Provisional
Probab=86.87 E-value=1 Score=24.69 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=25.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 889889-426899999998589989999807
Q gi|254780808|r 8 VIVIGG-GHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 8 ViVIGa-G~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
|.|||| |+=|+-.|+.++..|+-..|+=.+
T Consensus 4 V~IIGA~G~VG~s~A~~l~~~~~~~elvL~D 34 (313)
T PTZ00325 4 VAVLGAAGGIGQPLSLLLKRNPYVSTLSLYD 34 (313)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9998999869999999998389977799980
No 350
>PTZ00188 adrenodoxin reductase; Provisional
Probab=86.86 E-value=1.1 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCH
Q ss_conf 63578898894268999999985-899899998076
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar-~G~~v~L~~~~~ 38 (626)
+.|-|-|||+|-||+=||.+|-+ -+++|.+||--|
T Consensus 38 rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 765799988883899999999638997798882689
No 351
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.81 E-value=1.1 Score=24.30 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|.|+|.|-.|.-||-.|.++|++|.++..+.
T Consensus 10 vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~ 40 (501)
T PRK02006 10 VLVLGLGESGLAMARWCARHGCRLRVADTRE 40 (501)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9998336889999999997898499998999
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.78 E-value=1 Score=24.64 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 7635788988942689999999858998999980762
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
+|+ |.|+|.|-.|.-||-.|.++|++|.++.-+.+
T Consensus 14 gk~--v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~ 48 (481)
T PRK01438 14 GLR--VVVAGLGVSGFPAADALHELGASVTVVADGDD 48 (481)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 998--99995758899999999967998999979987
No 353
>KOG2755 consensus
Probab=86.73 E-value=0.64 Score=26.06 Aligned_cols=31 Identities=42% Similarity=0.557 Sum_probs=25.1
Q ss_pred EEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Q ss_conf 8898894268999999985--899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAK--LGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~ 38 (626)
-+|||||.||.-+|-|+|. ....++|+|-.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCH
T ss_conf 599857614325899997538887389996417
No 354
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.66 E-value=1.5 Score=23.36 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 987635788988942689999999858998999980
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~ 36 (626)
|-+++=.|.|||+|==||=-|+.|++.|..|.|+.-
T Consensus 1 M~~~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r 36 (313)
T PRK06249 1 MDSETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999988899999149999999999966995699967
No 355
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.49 E-value=1.2 Score=24.15 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7889889426899999998589989999
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
-|.|||+|==||.+|..||+.|+..+-+
T Consensus 26 ~VlIVGaGGLGs~~a~~La~aGVG~l~i 53 (337)
T PRK12475 26 HVLIIGAGALGAANAEALVRAGIGKLTI 53 (337)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 6999977777899999999828986999
No 356
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.42 E-value=1.3 Score=23.91 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=24.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57889889426899999998589989999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
--|.|||+|=-||.+|..||+.|+..+-+
T Consensus 22 s~VlivG~GGlGs~~~~~La~~Gvg~i~l 50 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGL 50 (228)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 97899887788999999999839975899
No 357
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.23 E-value=1.1 Score=24.42 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=32.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 6357889889426899999998589989999807626012
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
|+ |.|+|.|-.|.-||-.+.++|.+|..+..+++...+
T Consensus 10 k~--v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~ 47 (457)
T PRK01390 10 KT--VALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAK 47 (457)
T ss_pred CE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf 98--999943699999999999789979999399206689
No 358
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.17 E-value=2.6 Score=21.70 Aligned_cols=94 Identities=11% Similarity=-0.021 Sum_probs=51.5
Q ss_pred CCCCCCCEEEECCC---HHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894---268999999985899899998076260124667002211224899999863039999998863
Q gi|254780808|r 1 MINRSYDVIVIGGG---HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG 77 (626)
Q Consensus 1 m~~~~~dViVIGaG---~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~ 77 (626)
|++|. ++|-||. -=|-+.|..+|+.|++|.+.-.+.+..++-.+...-. .-.+.+|+.+.|+..
T Consensus 3 L~gKv--alVTGasr~~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-------- 69 (257)
T PRK12748 3 LMKKI--AIVTGASRLNGIGAAICRVLAQKGIDIFFTYWSQYDKAMPWGMHDKE---PFLLKEEIESYGVRC-------- 69 (257)
T ss_pred CCCCE--EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHH---HHHHHHHHHHCCCEE--------
T ss_conf 99988--99928899985499999999987999999707525544342346067---999999999659828--------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 1488730787855534678784999999999999708996898
Q gi|254780808|r 78 IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 78 i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
-++.+- . .|.+.-...+...++....|++.
T Consensus 70 -----------~~~~~D-v-s~~~~~~~~~~~~~~~~G~iDiL 99 (257)
T PRK12748 70 -----------EMLEID-L-SQSYSPNRLFYMVSERLGDPSIL 99 (257)
T ss_pred -----------EEEECC-C-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf -----------999846-8-99999999999999974999899
No 359
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=86.09 E-value=1.4 Score=23.75 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=37.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC---CCC-CCCC
Q ss_conf 88988942689999999858998999980762601246---670-0221
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---CNP-AIGG 52 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~---Cnp-s~gg 52 (626)
|.|||||-=|+==|..+|+-|..|.|+-.+++.+.++- +|+ -++|
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~ 52 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPG 52 (329)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCC
T ss_conf 8998178379999999996698469996289999999734767010599
No 360
>PRK08328 hypothetical protein; Provisional
Probab=86.07 E-value=1.4 Score=23.64 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=25.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEE-EEE
Q ss_conf 578898894268999999985899899-998
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTA-LIT 35 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~ 35 (626)
-.|.|||+|==||.+|..+|+.|+... |+-
T Consensus 28 s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD 58 (230)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGTVLLID 58 (230)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9789988787899999999984898689874
No 361
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=85.82 E-value=1.7 Score=22.97 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=23.0
Q ss_pred CCCCCCCEEEECC-----------------CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9876357889889-----------------4268999999985899899998
Q gi|254780808|r 1 MINRSYDVIVIGG-----------------GHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 1 m~~~~~dViVIGa-----------------G~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
||+| |+|||- |=++.-.|.++||+|.+|.++.
T Consensus 1 mm~k---i~~iGe~~~d~~~~~~~~~~~~pGG~~~N~A~~larLG~~~~~vg 49 (304)
T PRK09434 1 MMNK---VWVLGDAVVDLIPEGQNRYLKCPGGAPANVAVGVARLGGESGFIG 49 (304)
T ss_pred CCCC---EEEECCCEEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 9984---999815499986668896604668779999999998699879999
No 362
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=85.65 E-value=0.5 Score=26.80 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=67.9
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20233222475111331000010112005444454410110000134432114787668777435657800000000123
Q gi|254780808|r 166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT 245 (626)
Q Consensus 166 ~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~~~~~t 245 (626)
.+.+++.++.+.+|+..+..+....|+.|--.+-+||....++-+|...-.....-++..|+-.+..++ +-
T Consensus 155 yFyDAaaPIVe~dS~d~~k~f~~SRYdKGeaaYlNCp~teEey~~F~eaL~~AE~vplKdFdrEka~fF---------EG 225 (444)
T TIGR00137 155 YFYDAAAPIVEKDSVDKEKAFLASRYDKGEAAYLNCPLTEEEYKKFYEALLEAEKVPLKDFDREKAVFF---------EG 225 (444)
T ss_pred HHHHHCCCEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE---------CC
T ss_conf 455300540000004522110102357765553267777456778999998734788987744221332---------28
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2001477764024575414432356422255
Q gi|254780808|r 246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCP 276 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~gprycP 276 (626)
|-+.+++... +.....| |.++.+|.-.+.
T Consensus 226 ClPIEemA~R-G~kTmlf-GPmKPVGL~dpr 254 (444)
T TIGR00137 226 CLPIEEMAKR-GKKTMLF-GPMKPVGLVDPR 254 (444)
T ss_pred CCCHHHHHHC-CHHHCCC-CCCCCCCCCCCC
T ss_conf 8778999624-3223025-888864665675
No 363
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.49 E-value=1.4 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 788988942689999999858998999
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTAL 33 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L 33 (626)
.|.|||+|==||.+|..||++|+..+-
T Consensus 26 ~VlVvGaGGLGs~~a~~La~aGVG~i~ 52 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVT 52 (339)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf 789987777779999999984898299
No 364
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.43 E-value=1.6 Score=23.22 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 57889889426899999998589989999807
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
..+.||||-.=-.|-+-.+++.|.+|.++-..
T Consensus 3 ~~iaviGGD~Rq~~l~~~L~~~g~~V~~~gf~ 34 (296)
T PRK08306 3 MHIAVIGGDARQLELIRKLVELGAKVSLVGFD 34 (296)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 48999787589999999999779979998357
No 365
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.40 E-value=1.6 Score=23.25 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=34.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 889889426899999998589989999807626012
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
++|||+|--|..-|-.+++.|..|.+++.+++.+.+
T Consensus 3 iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~ 38 (225)
T COG0569 3 IIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEE 38 (225)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 999898578899999998789908999768899998
No 366
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.09 E-value=1.5 Score=23.39 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCCCCCC
Q ss_conf 63578898894268999999985899899998076-260124667002
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAI 50 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~Cnps~ 50 (626)
++..|.|||||-.+..=+-.+-+.|+.|.++.... +.+-+|.....+
T Consensus 23 ~klkvLVVGGG~VA~RKi~~Ll~agA~VtVVSP~~~~el~~L~~~~~I 70 (222)
T PRK05562 23 NKIKVLVIGGGKAAFIKGKTFLKKGCYVEILSKEFSKEFLDLKKYGNL 70 (222)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCE
T ss_conf 676699999879999999999878998999878668899999975986
No 367
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.98 E-value=1.7 Score=23.09 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 876357889889426899999998589989999807
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
|.| |.|||+|+-|+-+|+.++..|+. .|+=.+
T Consensus 1 M~K---V~IIGaG~VG~~~A~~l~~~~~~-eivLiD 32 (313)
T PTZ00117 1 MKK---ISIIGSGQIGAIVGLLLLQENLG-DVYLYD 32 (313)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHCCCC-EEEEEE
T ss_conf 978---99989798999999999708998-799995
No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.97 E-value=2.1 Score=22.44 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=29.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 88988942689999999858998999980762
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTS 39 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~ 39 (626)
|.|||+|==||=-|+.+++.|..|.|+...+.
T Consensus 3 I~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~ 34 (307)
T PRK06522 3 IAILGAGAIGGLFGARLAQAGHDVTLVARGAT 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 99999149999999999848998899978888
No 369
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.82 E-value=1.9 Score=22.73 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=14.0
Q ss_pred HHHHHHHHHHCCCCEEEEE----CCHHHC
Q ss_conf 8999999985899899998----076260
Q gi|254780808|r 17 GCEAAAVAAKLGASTALIT----HKTSTI 41 (626)
Q Consensus 17 G~EAA~~~Ar~G~~v~L~~----~~~~~~ 41 (626)
..|.--.+|+.|+-.+|++ ++++++
T Consensus 53 ~~~~i~~laelGVv~LLF~iGLE~sl~~L 81 (558)
T PRK10669 53 DTKLAPELAELGVILLMFGVGLHFSLKDL 81 (558)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 87899999999799999987866899999
No 370
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=84.49 E-value=0.77 Score=25.49 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=19.8
Q ss_pred CCCCCCCCCCEEEEC--CCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 676433452013015--787764543477666898899999
Q gi|254780808|r 284 RFGERNGHQIFLEPE--GLNTDVVYPNGISTALPEEIQHQF 322 (626)
Q Consensus 284 ~~~~~p~h~VqLrpE--~~~~~~~n~vGFqTsL~~~~Q~rv 322 (626)
+||++..=..+|-++ +..+=..|+||=-||-=+|+...+
T Consensus 208 ~fph~E~~~~~~~~~~P~vksI~~Ninp~ktnvIFG~~t~~ 248 (434)
T TIGR00479 208 KFPHKEELVLELQERYPDVKSIVQNINPEKTNVIFGEETEV 248 (434)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEECCCCEEE
T ss_conf 38533689999985188446088603789874220771168
No 371
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.15 E-value=1.6 Score=23.20 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=25.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|||+|==|||+|..+++.|+...- =.++|.+
T Consensus 2 VlivG~GglG~~va~~L~~~Gv~~i~-ivD~D~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKIT-LIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEE-EEECCCC
T ss_conf 99999798999999999993797199-9978987
No 372
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.00 E-value=1.9 Score=22.68 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=26.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCE-EEEECC
Q ss_conf 57889889426899999998589989-999807
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGAST-ALITHK 37 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v-~L~~~~ 37 (626)
-.|.|||.|==||.+|.+|||.|+.. .|+.+.
T Consensus 12 s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D 44 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 978998886368999999998099759997199
No 373
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=83.65 E-value=2.1 Score=22.35 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=26.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|||+|==|||.+..+|.+|+...-+ .+.|++
T Consensus 2 VlvvGaGglGce~~k~La~~Gvg~i~i-iD~D~I 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHV-IDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCEE
T ss_conf 899948887999999999839986999-759900
No 374
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.52 E-value=2.1 Score=22.41 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57889889426899999998589989999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
-.|.|||+|==|||+|..+|..|+...-+
T Consensus 20 s~VlVvG~GGLG~~v~~~La~aGVg~i~i 48 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITI 48 (198)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 98999877889999999999749986999
No 375
>PRK08223 hypothetical protein; Validated
Probab=83.45 E-value=2 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 578898894268999999985899899998
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
--|.|||+|=-||-+|..+|+.|+-..-+-
T Consensus 28 s~VlVvG~GGlGs~~a~~LAraGVG~i~lv 57 (287)
T PRK08223 28 SRVAIAGLGGVGGVHLLTLARLGIGKFNIA 57 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 968999367557999999998289759997
No 376
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=83.41 E-value=0.39 Score=27.60 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=27.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 63578898894268999999985899-89999807
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGA-STALITHK 37 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~-~v~L~~~~ 37 (626)
+.||.+|||||-.|.||-|.+|.+-- +|..+...
T Consensus 2 ~a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q 36 (486)
T TIGR01423 2 KAYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQ 36 (486)
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEE
T ss_conf 40578998247774100101233210316899842
No 377
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.38 E-value=1.7 Score=23.03 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE--EEEECCHH
Q ss_conf 889889426899999998589989--99980762
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKTS 39 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~~ 39 (626)
|.|||+|+-|+-.|+.++..|.-. .|+..+++
T Consensus 6 v~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 39 (312)
T cd05293 6 VTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9998978889999999996699887999938898
No 378
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.31 E-value=2 Score=22.59 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=30.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+|+ |.|+|.|-.|.-||-.+.++|++|..+..+.
T Consensus 6 ~k~--v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKN--VVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 39 (438)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998--9999457888999999997899699998999
No 379
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.30 E-value=1.6 Score=23.16 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|+|.|..|.-+|-.+.+.|++|..+..+++.+
T Consensus 15 V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~ 48 (487)
T PRK03369 15 VLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL 48 (487)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 9999156838999999997869799998982577
No 380
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=83.25 E-value=2 Score=22.51 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=26.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 578898894268999999985899899998
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
--|.|||+|=-||-+|..||..|+-.+-+-
T Consensus 43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~iv 72 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIV 72 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 978998787578999999998289759998
No 381
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=83.09 E-value=2.7 Score=21.65 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHH
Q ss_conf 7635788988942689999999858998-9999807626
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTST 40 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~~ 40 (626)
+++ |.|||+|-.|.-++-.+.++|++ +.++.=.+++
T Consensus 12 ~~~--vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~k 48 (134)
T pfam01488 12 GKK--VLLIGAGEMARLAAKHLLSKGAKKITIANRTLEK 48 (134)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 898--9999960999999999997599889995475789
No 382
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=82.86 E-value=1.6 Score=23.15 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=30.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 88988942689999999858998999980762601246
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
|+|-|||+||.-+|-.++..|..-.++|.+- -+|-.|
T Consensus 2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~-vlGG~v 38 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARD-VLGGKV 38 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECHH-HCCCCE
T ss_conf 5772274556778878763589626863210-035502
No 383
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=82.76 E-value=0.76 Score=25.55 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC------CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999997089968980-0101120258811322203586------33445433346643101344432023322247511
Q gi|254780808|r 106 AMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS------MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP 178 (626)
Q Consensus 106 ~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~------~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~ 178 (626)
|...+ .+-|||+|.+ .-++.|..++++++||.-.-+. .-.++-|||+.|.|-|.++. .-+
T Consensus 204 YL~pA-~kRpNle~~t~af~~ki~feg~ratGVe~~~ggst~~e~~~ankEVilsagainSPqlL------------~lS 270 (540)
T TIGR01810 204 YLDPA-LKRPNLEVRTRAFVDKIVFEGKRATGVEFKKGGSTIKERVKANKEVILSAGAINSPQLL------------QLS 270 (540)
T ss_pred HHHHH-HCCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCEECCCCEEEEECCHHHHHHHH------------HHC
T ss_conf 64466-40787200142222000330883799888228973300001244578833412135899------------762
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCC
Q ss_conf 1331000010112005444454410110000134432114787
Q gi|254780808|r 179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE 221 (626)
Q Consensus 179 s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~ 221 (626)
-++-|+-|++++++..- .-|-|-..--|.-.+..|..-.
T Consensus 271 GiG~aehL~e~gI~~~~----~lPGVGeNl~DHlE~Y~Q~~ck 309 (540)
T TIGR01810 271 GIGDAEHLKELGIELKV----ELPGVGENLQDHLEVYLQYACK 309 (540)
T ss_pred CCCCHHHHHHCCCCEEE----CCCCCCCCHHHHHHHHHHHHCC
T ss_conf 89717999855896065----2787876334356423224228
No 384
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=82.67 E-value=1.9 Score=22.71 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=33.7
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEECCH--HHCCCCCC
Q ss_conf 88988942689999999858--99899998076--26012466
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKL--GASTALITHKT--STIGSMSC 46 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~--~~~ael~C 46 (626)
|.|||||-||-=.|..+-++ +..+..+|.|+ |++|.-|-
T Consensus 3 I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVV 45 (770)
T PRK08255 3 IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVV 45 (770)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEE
T ss_conf 9997787589999999986589997479842799995244687
No 385
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.50 E-value=2.4 Score=21.95 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+|||||-.+..=+-.+.+.|++|.++...+
T Consensus 16 vLVvGGG~VA~rK~~~Ll~~ga~VtVvsp~~ 46 (157)
T PRK06719 16 VVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9998898999999999987879699999986
No 386
>PRK07832 short chain dehydrogenase; Provisional
Probab=82.48 E-value=3.1 Score=21.19 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=52.1
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88988942-68999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
|+|-||+- =|-+-|.++|+.|++|.|.--+.+.+.+ +..|++.+|+....
T Consensus 3 alITGassGIG~a~A~~la~~Ga~v~l~~r~~~~l~~--------------~~~~l~~~g~~~~~--------------- 53 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQ--------------TVADARALGGTVPE--------------- 53 (272)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------------HHHHHHHCCCCEEE---------------
T ss_conf 9994720199999999999889989999898899999--------------99999845897147---------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7855534678784999999999999708996898
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
..++.. .|.+.-...+.+.++.+..|+++
T Consensus 54 ----~~~~Dv-sd~~~v~~~~~~~~~~~g~iDiL 82 (272)
T PRK07832 54 ----HRALDI-SDYDAVAAFAADIHAAHPSMDVV 82 (272)
T ss_pred ----EEECCC-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf ----885668-99999999999999972998889
No 387
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=82.48 E-value=1.9 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=27.2
Q ss_pred EEEECC-CHHHHHHHHHHHHCCC----CEEEEECCHHH
Q ss_conf 889889-4268999999985899----89999807626
Q gi|254780808|r 8 VIVIGG-GHAGCEAAAVAAKLGA----STALITHKTST 40 (626)
Q Consensus 8 ViVIGa-G~AG~EAA~~~Ar~G~----~v~L~~~~~~~ 40 (626)
|.|||| |+-|+..|+.++..+. .+.|+..+++.
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~ 38 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK 38 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 98987797799999999982899999889999589872
No 388
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.99 E-value=2.3 Score=22.11 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=25.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57889889426899999998589989999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
-.|.|||+|=-||-+|..||+.|+-.+-+
T Consensus 139 a~VlivG~GGLGs~~a~yLA~aGVG~i~l 167 (379)
T PRK08762 139 ARVLLIGAGGLGSPAAFYLAAAGVGHLRI 167 (379)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 97899888755799999999837975897
No 389
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=81.85 E-value=1.9 Score=22.75 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=25.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898894268999999985899899998
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
|.|||+|==||-||..||++|+=+.-+=
T Consensus 24 VLiiGaGgLGs~~~~~LA~AGVG~i~i~ 51 (210)
T TIGR02356 24 VLIIGAGGLGSPAALYLAAAGVGTITIV 51 (210)
T ss_pred EEEEEECHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5999726145689999982888378998
No 390
>KOG3851 consensus
Probab=81.71 E-value=1 Score=24.54 Aligned_cols=289 Identities=20% Similarity=0.228 Sum_probs=144.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 63578898894268999999985899--8999980762601246670022112248999998630399999988631-48
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI-QF 80 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i-~~ 80 (626)
+.|.|.|||||-+||-.|.+.+|.=- +|..+|..-+.. --|-+--+|- |+|.. |.+.- |.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy----YQPgfTLvGg-----------Gl~~l--~~srr~~a 100 (446)
T KOG3851 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY----YQPGFTLVGG-----------GLKSL--DSSRRKQA 100 (446)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHCC----CCCCEEEECC-----------CHHHH--HHCCCCCC
T ss_conf 0348999867863057899998656898557755215324----5765178643-----------04446--55367411
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 87307878555346787849999999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG 160 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g 160 (626)
-+ -|++ -+-+++-|.++.++++. |.|..|.++.-.-.|+|+|--|+-
T Consensus 101 ~l-----iP~~-------------------------a~wi~ekv~~f~P~~N~---v~t~gg~eIsYdylviA~Giql~y 147 (446)
T KOG3851 101 SL-----IPKG-------------------------ATWIKEKVKEFNPDKNT---VVTRGGEEISYDYLVIAMGIQLDY 147 (446)
T ss_pred CC-----CCCC-------------------------CHHHHHHHHHCCCCCCE---EECCCCCEEEEEEEEEEEECEECC
T ss_conf 11-----5677-------------------------58999888750877674---770599677665676654024440
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf 34443202332224751113310000101120054444544101100001344321147876687774356---578000
Q gi|254780808|r 161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD---KITNRQ 237 (626)
Q Consensus 161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~---~~~~~q 237 (626)
... .++.+.+.. -+.|-.-...++|-.--+.+.....+.-|.|-+. +.-..|
T Consensus 148 ~~I----------------kGl~Eal~t---------P~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQ 202 (446)
T KOG3851 148 GKI----------------KGLVEALDT---------PGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQ 202 (446)
T ss_pred CHH----------------CCHHHHCCC---------CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCH
T ss_conf 200----------------375766259---------9835546867899999999723578657834998641178853
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCEEEE--CCCCCCEEEECCC
Q ss_conf 000001232001477764024575414432356422255321233567643345-----201301--5787764543477
Q gi|254780808|r 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-----QIFLEP--EGLNTDVVYPNGI 310 (626)
Q Consensus 238 ~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h-----~VqLrp--E~~~~~~~n~vGF 310 (626)
..||+++.--.-+. .|++.+.. |-.|++. -|+-+.|+ ++|=|- -|...+++-++
T Consensus 203 Ki~yise~y~Rk~g-vRd~a~ii-------------y~Tsl~~---iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~-- 263 (446)
T KOG3851 203 KIMYISESYFRKRG-VRDNANII-------------YNTSLPT---IFGVKHYADALEKVIQERNITVNYKRNLIEVR-- 263 (446)
T ss_pred HHHHHHHHHHHHHC-CCCCCCEE-------------EECCCCC---EECHHHHHHHHHHHHHHCCEEEEECCCEEEEE--
T ss_conf 31123599998727-55565279-------------8517650---10378899999999875453763012358985--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCEEEEC--CHHHHCCC-------CHHHH---------------HHHHHHHCCCEEEEE
Q ss_conf 6668988999999875434001001100--01211023-------54565---------------677654033415662
Q gi|254780808|r 311 STALPEEIQHQFIRTIPGLEKVNIIRPG--YAIEYDYI-------NPKEL---------------FPTLETKKISGLFLA 366 (626)
Q Consensus 311 qTsL~~~~Q~rv~r~IPGLEnAef~R~G--y~ieyd~~-------~P~~L---------------~~tLe~k~~~~LffA 366 (626)
..+|+.||..+- .|| +-++|+.+ .|..| ..|||+|+.||+|--
T Consensus 264 -----~~~~~AvFe~L~--------kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgi 330 (446)
T KOG3851 264 -----TNDRKAVFENLD--------KPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGI 330 (446)
T ss_pred -----CCCHHHHHHHCC--------CCCCEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCEECCHHHHCCCCCCCCEEE
T ss_conf -----364143887547--------9985147756036416998872554137565755646547323202568870241
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 13304334---6666667789999987420334565
Q gi|254780808|r 367 GQINGTTG---YEEAAAQGLVAGINSARKSNKLDCI 399 (626)
Q Consensus 367 GQI~GteG---YeEAAAqGl~AGiNa~~~~~~~~p~ 399 (626)
|--.++-- |-..|||-=+---|....++|+.|.
T Consensus 331 GDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt 366 (446)
T KOG3851 331 GDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPT 366 (446)
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 234689952667888742744356599996479864
No 391
>PRK07411 hypothetical protein; Validated
Probab=81.71 E-value=2.5 Score=21.92 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=25.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57889889426899999998589989999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
--|.|||+|=-||-+|..||..|+-..-+
T Consensus 39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~i 67 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGI 67 (390)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 97899888723799999999838975999
No 392
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.60 E-value=2.3 Score=22.14 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=30.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+|+ |.|||.|-.|.-||-.|.++|++|.....++
T Consensus 9 ~k~--i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (450)
T PRK02472 9 NKK--VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 42 (450)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998--9999778999999999998869899984886
No 393
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=81.50 E-value=2.4 Score=22.02 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=37.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC
Q ss_conf 8898894268999999985899899998076260124667002
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~ 50 (626)
|-|+|||-=|..-|.++.++|++|..+...+|.-|.-+|+-.+
T Consensus 15 IgIlGgGQLg~Mla~aA~~LG~~vivld~~~d~PA~~vAd~~~ 57 (395)
T PRK09288 15 VMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSH 57 (395)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEE
T ss_conf 9998988999999999998799899984899594467286579
No 394
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.40 E-value=2.4 Score=21.99 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCE-EEEECCH
Q ss_conf 9876357889889426899999998589989-9998076
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAST-ALITHKT 38 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v-~L~~~~~ 38 (626)
||+ +-.|.|||+|+-|+-.|+.+...|+.- .|+-.+.
T Consensus 4 ~~~-~~KV~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~ 41 (322)
T PTZ00082 4 MIP-RKKISLIGSGNIGGVMAYLIQLKNLADVVLFDIVP 41 (322)
T ss_pred CCC-CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 017-98299989698999999999638997799997889
No 395
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.35 E-value=2.6 Score=21.74 Aligned_cols=28 Identities=39% Similarity=0.571 Sum_probs=24.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 5788988942689999999858998999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTAL 33 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L 33 (626)
--|.|||+|=-||-+|..||..|+-..-
T Consensus 42 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ 69 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTIT 69 (370)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf 9789988875789999999982897489
No 396
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.10 E-value=2.3 Score=22.10 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=29.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|+|+|==||=-|+.+++.|..|.|+. +.+++
T Consensus 3 I~I~GaGAiG~~~a~~L~~~g~~V~lv~-r~~~~ 35 (306)
T PRK12921 3 IAVVGAGAVGGTFGARLLEAGRDVTFLG-RSARA 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCHH
T ss_conf 9999924999999999983699889997-00099
No 397
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.79 E-value=2.9 Score=21.38 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEE-EEECC
Q ss_conf 3578898894268999999985899899-99807
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHK 37 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~~ 37 (626)
+-.|.|||+|=-|||+|..+|+.|+... |+-.+
T Consensus 21 ~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d 54 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 0959998878899999999998379869999899
No 398
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.71 E-value=2.4 Score=21.94 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=25.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE--EEEECCH
Q ss_conf 889889426899999998589989--9998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~ 38 (626)
|.|||+|+-|+-.|+.++.+|.-- .|+-.+.
T Consensus 2 I~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 899996989999999998569988799992889
No 399
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.70 E-value=2.6 Score=21.68 Aligned_cols=106 Identities=13% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHH-HHHHHCCEEEECCHHHHCCC--CHHHHHHHHHHHCCCEEEEEEEEECCCHHH
Q ss_conf 877645434776668988999999875-43400100110001211023--545656776540334156621330433466
Q gi|254780808|r 300 LNTDVVYPNGISTALPEEIQHQFIRTI-PGLEKVNIIRPGYAIEYDYI--NPKELFPTLETKKISGLFLAGQINGTTGYE 376 (626)
Q Consensus 300 ~~~~~~n~vGFqTsL~~~~Q~rv~r~I-PGLEnAef~R~Gy~ieyd~~--~P~~L~~tLe~k~~~~LffAGQI~GteGYe 376 (626)
..+..|.+.|-- |=||. |-|.|+-|-.+|.-..|..+ ++..|...++.-..++ |+| .|=|==|=
T Consensus 213 ~~tk~fgviG~P----------I~HS~SP~lHN~~f~~~gl~~~Y~~~~v~~~~l~~f~~~~~~~~--f~G-~sVTiP~K 279 (477)
T PRK09310 213 AQSHIYGLIGDP----------VDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPEFFSLIRDLP--FLG-LSVTMPLK 279 (477)
T ss_pred CCCCEEEEECCC----------HHHCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCE-EEECCCCH
T ss_conf 567489998176----------23133899999999977999677888568889999999875379--988-99880779
Q ss_pred HHHHHHHHH-------HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 666677899-------99987420334565465321079999998860787
Q gi|254780808|r 377 EAAAQGLVA-------GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420 (626)
Q Consensus 377 EAAAqGl~A-------GiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~ 420 (626)
|++-. ++- -|.|+..+..++.-..+-+.-|.|. +..|...++
T Consensus 280 ~~i~~-~lDeld~~A~~iGAVNTiv~~~gkl~G~NTD~~G~-~~~L~~~~~ 328 (477)
T PRK09310 280 TAVLD-FLDKLDPSVKLCGSCNTLVFRNGKILGYNTDGEGL-FSLLKQKNI 328 (477)
T ss_pred HHHHH-HHCCCCHHHHHHCCEEEEEEECCEEEEEECCHHHH-HHHHHHHCC
T ss_conf 99998-71528988997376658998899899982578999-999997099
No 400
>LOAD_Hrd consensus
Probab=80.66 E-value=2 Score=22.58 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHH
Q ss_conf 46568999876232737888750288999899999
Q gi|254780808|r 574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608 (626)
Q Consensus 574 ~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~ 608 (626)
.=+++.....+.+.+|.|+.|-.+|+||++.-+.-
T Consensus 28 ~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~~ 62 (77)
T LOAD_Hrd 28 SIFSDATLKEMAALLPTTVSELLAIDGVGEAKVEK 62 (77)
T ss_pred EEECHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH
T ss_conf 45899999999997899999982899969999999
No 401
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=80.64 E-value=3.2 Score=21.07 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88988942689999999858998999
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTAL 33 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L 33 (626)
|.|||+|=-|||.+--+|.+|+...-
T Consensus 2 VlvvGaGglG~e~lk~La~~Gvg~i~ 27 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIH 27 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf 89988888899999999982898599
No 402
>KOG2403 consensus
Probab=80.60 E-value=1.9 Score=22.75 Aligned_cols=152 Identities=26% Similarity=0.300 Sum_probs=75.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEE----CCHHHCCCCCCCCCC-CCCC------------H------------
Q ss_conf 3578898894268999999985899899998----076260124667002-2112------------2------------
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAI-GGLG------------K------------ 55 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~----~~~~~~ael~Cnps~-gg~a------------k------------ 55 (626)
.||-+|||+|=||--||..+|..|.+|.-++ .++.++++.--+|+. |-.. |
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i~ 134 (642)
T KOG2403 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAIH 134 (642)
T ss_pred ECEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 01058993153334666665306733788732425666513643212444326777514554444002323467432446
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-----CCCCCCCCHHHHH---HHHHHHHHHHHHHHCCCCCEEE
Q ss_conf ------489999986303999999886314887-307-----8785553467878---4999999999999708996898
Q gi|254780808|r 56 ------GHLVREIDALDGLMGRVADAAGIQFRV-LNV-----KKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 56 ------g~L~~Ei~aLgg~m~~~aD~~~i~~r~-ln~-----skGpAv~alraqv---DR~~fs~~vt~~l~~~pni~i~ 120 (626)
-.-+.|+..+|--..+..|.. |.-|. .-- +.|-|.++-++ + ++.+++.--+..+...-+..+
T Consensus 135 ym~~ea~~a~~el~~~g~~f~~~~dg~-i~q~~~gg~s~~~gkggq~~r~~~~-Ad~tg~~~~~tL~~~~l~~~~~~f~- 211 (642)
T KOG2403 135 YMCREAPKAVIELENYGMPFSRTEDGK-IYQRAFGGQSLDFGKGGQAYRACCV-ADRTGHALLHTLYGQSLRHNTSFFV- 211 (642)
T ss_pred HHHHHCCHHHHHHHHCCCCCCCCCCCC-HHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHCCCHHHHH-
T ss_conf 877416234788873468656566775-7776541235676666666617886-2166607776667777401045689-
Q ss_pred HHHHCCCCCCCCC-----EEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 0010112025881-----13222035863344543334664310
Q gi|254780808|r 121 QGEVAGFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 121 ~~eV~~l~~~~~~-----~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
.==..+++...+. ...+.+.....+.++.+|++||..=+
T Consensus 212 ~yfa~dll~~~g~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~ 255 (642)
T KOG2403 212 EYFALDLLMSQGECVGVIALNLEDGTIHRFRAKNTILATGGYGR 255 (642)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCE
T ss_conf 99999988741681079999962264211134006999841662
No 403
>PRK06179 short chain dehydrogenase; Provisional
Probab=79.95 E-value=4.1 Score=20.36 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCCCCCCEEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 987635788988942689--99999985899899998076260124
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
|+|++ |+||=||-.|+ +.|..+|+.|++|.+..-+.+...++
T Consensus 1 M~~~K--valITGassGIG~a~A~~la~~G~~V~~~~r~~~~~~~~ 44 (270)
T PRK06179 1 MSNKK--VALVTGASSGIGRATAEALARAGYRVFGTSRNPARATPI 44 (270)
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf 98995--899907246999999999998799999996897773054
No 404
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.64 E-value=2.1 Score=22.45 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=28.3
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894-268999999985899899998076260
Q gi|254780808|r 8 VIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|+|-||+ -=|-+.|..+|+.|++|.+.-.+.+.+
T Consensus 3 VlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l 37 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENL 37 (259)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 99975877899999999998799999997998999
No 405
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=79.63 E-value=3.4 Score=20.90 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=36.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6357889889426899999998589989999807626012466700221122489999
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~E 61 (626)
..|||+|.|-|+--|=-+-++|.-|-+|+.+.- ||.-|+...++-..+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~----------Nd~YG~~~asltl~q 52 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDK----------NDYYGSTSASLTLTQ 52 (434)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC----------CCCCCCCCCCEEHHH
T ss_conf 300189962668999998886226751799707----------876675333343899
No 406
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.44 E-value=2.9 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE--EECCH
Q ss_conf 88988942689999999858998999--98076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTAL--ITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L--~~~~~ 38 (626)
|.|||+|+-|+-.|+.++..|.--.| +..+.
T Consensus 3 I~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (312)
T PRK06223 3 ISIIGAGNVGATLAHLLALKELGKDVVLFDIPE 35 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 999996989999999998579987489976999
No 407
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.39 E-value=4 Score=20.44 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=28.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEE-EEECCHHHC
Q ss_conf 3578898894268999999985899899-998076260
Q gi|254780808|r 5 SYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTI 41 (626)
Q Consensus 5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~~~~~~ 41 (626)
+-+|.|||+|=|+-=++++++++|++-. ++.-+.++.
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~ 56 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKA 56 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 99999986758999999999971998228860899999
No 408
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=79.39 E-value=2.3 Score=22.10 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 788988942689999999858998999
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTAL 33 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L 33 (626)
-|.|||+|-=||++|+.+|++|+...-
T Consensus 32 ~vlvvG~GglG~~~~~~la~aGvg~l~ 58 (254)
T COG0476 32 RVLVVGAGGLGSPAAKYLALAGVGKLT 58 (254)
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCEEE
T ss_conf 289977763351999999982698599
No 409
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=79.20 E-value=3.1 Score=21.22 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|.|||+|==||=-|+.+++.|..|.|+.-..
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~ 31 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGR 31 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999668999999999997799289997563
No 410
>PRK05855 short chain dehydrogenase; Validated
Probab=79.09 E-value=4.8 Score=19.84 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=45.3
Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 156621330433466666677899999874203345654653210799999988607877
Q gi|254780808|r 362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL 421 (626)
Q Consensus 362 ~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~~ 421 (626)
.=.|.|++-=+|| |++||=..+--..--.|-.-.+.+|++.=.--..+.+-..|..
T Consensus 310 ~~rFsGKvAvVTG----A~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~ 365 (582)
T PRK05855 310 RGRFGGKLVVVTG----AGSGIGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAV 365 (582)
T ss_pred CCCCCCCEEEEEC----CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCE
T ss_conf 8874995899958----7578999999999977999999607999999999999951984
No 411
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.95 E-value=3.4 Score=20.89 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCCEEEEE----CCHHHC
Q ss_conf 8999999985899899998----076260
Q gi|254780808|r 17 GCEAAAVAAKLGASTALIT----HKTSTI 41 (626)
Q Consensus 17 G~EAA~~~Ar~G~~v~L~~----~~~~~~ 41 (626)
-.|.-...|..|+--+|++ .+|+++
T Consensus 51 ~~~~i~~~aE~GVv~LLF~iGLEls~~rL 79 (615)
T PRK03562 51 DAESILHFAEIGVVLMLFVIGLELDPQRL 79 (615)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 88999999999799999998857899999
No 412
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.76 E-value=3.1 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=25.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE--EEEECCH
Q ss_conf 889889426899999998589989--9998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~ 38 (626)
|.|||+|+-|+-.|+.++..|.-. .|+-.+.
T Consensus 3 I~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~ 35 (308)
T cd05292 3 VAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999994888999999998679988799991889
No 413
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.54 E-value=3.7 Score=20.64 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=25.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 78898894268999999985899899998
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
-|.|||+|==||-+|..||..|+-..-+-
T Consensus 30 ~VlvvG~GGLG~~~~~yLa~aGvG~i~i~ 58 (355)
T PRK05597 30 KVSVIGAGGLGSPALLYLAGAGVGHITII 58 (355)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 68998777668999999998499759997
No 414
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=78.45 E-value=3.2 Score=21.13 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=25.2
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCC--EEEEECCH
Q ss_conf 88988942-689999999858998--99998076
Q gi|254780808|r 8 VIVIGGGH-AGCEAAAVAAKLGAS--TALITHKT 38 (626)
Q Consensus 8 ViVIGaG~-AG~EAA~~~Ar~G~~--v~L~~~~~ 38 (626)
|.|||+|+ =|+-.|+.++..|.- ..|+-.+.
T Consensus 3 V~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~ 36 (142)
T pfam00056 3 VAVVGAGGGVGSSLAFALALQGLADELVLVDINK 36 (142)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9998987789999999997479663478850577
No 415
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=78.29 E-value=3.4 Score=20.87 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=61.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCC-----CHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 8898894268999999985899899998076260124667002211-----224899999863039----9999988631
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-----GKGHLVREIDALDGL----MGRVADAAGI 78 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~-----akg~L~~Ei~aLgg~----m~~~aD~~~i 78 (626)
|=|||||-=|=-=|++++++|++|..++..++.-|-.+++--+... +--.|+..-|.+-=+ -..+.++..-
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~ 83 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAA 83 (375)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf 99976869999999999864977999569999963341431541577888999999862988998514698899999996
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH
Q ss_conf 48873078785553467878499999999999970899689800
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~ 122 (626)
+..+ . |--.+|+.--||..=+...++.=-..|.-.++..
T Consensus 84 ~~~v---~--p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~ 122 (375)
T COG0026 84 SVKV---F--PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDS 122 (375)
T ss_pred HCCC---C--CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 1676---9--9989988776689999999976999998278579
No 416
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=77.70 E-value=3.7 Score=20.68 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCCCCCEEEECCCHHHHHHHH--HHHHCCCCE-EEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876357889889426899999--998589989-99980762601246670022112248999998630399999988631
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAA--VAAKLGAST-ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~--~~Ar~G~~v-~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
.++.|.|++||+|+=|.--+- ...+.|.++ .+|-.+|+.+|.-+.+-. +.-|+.|... ..+..|
T Consensus 81 ~~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~kiG~~i~gi~---------V~~i~~L~~~----i~~~~i 147 (211)
T PRK05472 81 LDKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPEKVGTKIGGIP---------VYHIDELEEV----IKENDI 147 (211)
T ss_pred CCCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHHHCCCEECCEE---------EECHHHHHHH----HHHHCC
T ss_conf 999750899888779999984876231897899997489788598838838---------7349999999----998199
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 488730787855534678784999999999999708
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~ 114 (626)
+.=+ -||.+-.|| .+.+.|-+.
T Consensus 148 ~iaI------iaVP~~~AQ--------~vad~Lv~a 169 (211)
T PRK05472 148 EIAI------LTVPAEAAQ--------EVADRLVEA 169 (211)
T ss_pred CEEE------EECCHHHHH--------HHHHHHHHH
T ss_conf 3899------955768899--------999999981
No 417
>pfam00570 HRDC HRDC domain. The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain cause human disease. It is interesting to note that the RecQ helicase in Deinococcus radiodurans has three tandem HRDC domains.
Probab=77.69 E-value=2.8 Score=21.49 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHH
Q ss_conf 656899987623273788875028899989999
Q gi|254780808|r 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALN 607 (626)
Q Consensus 575 gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~ 607 (626)
=+|+++...+.+.+|.|+.+-.+|+|+++.-+.
T Consensus 26 I~~d~~L~~ia~~~P~s~~~L~~i~g~~~~~~~ 58 (68)
T pfam00570 26 IFSDATLLEIAEKLPRTLEELLRIPGVGPRKLE 58 (68)
T ss_pred EECHHHHHHHHHHCCCCHHHHHCCCCCCHHHHH
T ss_conf 477999999998784999998089999999999
No 418
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.29 E-value=3.8 Score=20.56 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+|+ |.|||.|-.|--||-.|.+.|++|..+..++
T Consensus 5 ~k~--v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~ 38 (445)
T PRK04308 5 NKK--ILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998--9999989999999999997899199997999
No 419
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.01 E-value=3.9 Score=20.47 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 763578898894268999999985899899998076
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+|+ |.|+|-|-.|.-+|-.+.+.|++|..+..+.
T Consensus 14 ~kk--v~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~ 47 (458)
T PRK01710 14 NKK--VAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 996--9999787889999999997889799998988
No 420
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.37 E-value=4 Score=20.42 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=24.7
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf 889889-42689999999858998--9999807
Q gi|254780808|r 8 VIVIGG-GHAGCEAAAVAAKLGAS--TALITHK 37 (626)
Q Consensus 8 ViVIGa-G~AG~EAA~~~Ar~G~~--v~L~~~~ 37 (626)
|.|||| |+=|+-.|+.++..|.- ..|+-.+
T Consensus 3 V~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 3 VAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999999981899999999729997769998277
No 421
>KOG2018 consensus
Probab=76.18 E-value=3.8 Score=20.54 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|+|||+|--||=++--++|.|+.-.++- .+|.+
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iV-DfdqV 109 (430)
T KOG2018 77 VVVVGAGGVGSWVANMLLRSGVQKIRIV-DFDQV 109 (430)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-CHHHC
T ss_conf 9999168522999999998268638995-31014
No 422
>KOG3923 consensus
Probab=76.15 E-value=4 Score=20.39 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCCCC
Q ss_conf 57889889426899999998589----98999980762601246670
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG----ASTALITHKTSTIGSMSCNP 48 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G----~~v~L~~~~~~~~ael~Cnp 48 (626)
-+|.|||+|--||--||.+.+++ +++.=++.--|++-|..||-
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~ 50 (342)
T KOG3923 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSD 50 (342)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf 60899747710156899999865412688622787457786555554
No 423
>PRK08017 short chain dehydrogenase; Provisional
Probab=75.96 E-value=5.1 Score=19.66 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 87635788988942-68999999985899899998076260124
Q gi|254780808|r 2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
|+|. |+|.||+- =|-+.|.++|+.|.+|.+.--+++.+.++
T Consensus 1 M~K~--vlITGassGIG~a~A~~la~~G~~V~~~~r~~~~l~~~ 42 (256)
T PRK08017 1 MQKS--VLITGCSSGIGLESALELKRQGFRVLAGCRKPDDVARM 42 (256)
T ss_pred CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 9978--99965876899999999998799999996998999999
No 424
>PRK08263 short chain dehydrogenase; Provisional
Probab=75.65 E-value=5.3 Score=19.52 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=48.2
Q ss_pred CCCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98763578898894268--9999999858998999980762601246670022112248999998630399999988631
Q gi|254780808|r 1 MINRSYDVIVIGGGHAG--CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG--~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
||.| |++|=|+-.| -+.|..+++.|.+|.+.--+.+.+.++. .+ +|+ . +
T Consensus 1 m~gK---v~lITGassGIG~a~A~~la~~G~~Vv~~~R~~~~l~~l~--------------~~---~~~-------~--~ 51 (275)
T PRK08263 1 MMGK---VWFITGASRGFGREWTEAALERGDRVVATARDTATLADLA--------------ER---YGD-------A--L 51 (275)
T ss_pred CCCC---EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--------------HH---CCC-------C--E
T ss_conf 9899---8999467439999999999987998999979899999999--------------97---599-------6--7
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 488730787855534678784999999999999708996898
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
-.+ .+.. .|.+.-.+.+.+.++.+-.|+++
T Consensus 52 ----------~~~-~~Dv-td~~~v~~~v~~~~~~~G~iDiL 81 (275)
T PRK08263 52 ----------LPL-ALDV-TDRAAVFAAVEQAVKHFGRLDIV 81 (275)
T ss_pred ----------EEE-EEEC-CCHHHHHHHHHHHHHHHCCCCEE
T ss_conf ----------999-9648-99999999999999984998789
No 425
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=75.61 E-value=3.5 Score=20.81 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=25.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE--EEEECCH
Q ss_conf 889889426899999998589989--9998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~ 38 (626)
|.|||+|+=|+-.|+.++..|.-- .|+..+.
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~ 33 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 989896889999999998679988799981899
No 426
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.38 E-value=5 Score=19.70 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 87635788988942-689999999858998999980762601246
Q gi|254780808|r 2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
|.++ |+|.||.- =|-+-|.++|+.|.+|.|+--+.+.+.++.
T Consensus 1 M~~~--VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~ 43 (256)
T PRK07024 1 MPLK--VFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA 43 (256)
T ss_pred CCCE--EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 9998--999846029999999999988998999989889999999
No 427
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=75.36 E-value=5.9 Score=19.23 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCCEEEE----ECCHHHC
Q ss_conf 99999998589989999----8076260
Q gi|254780808|r 18 CEAAAVAAKLGASTALI----THKTSTI 41 (626)
Q Consensus 18 ~EAA~~~Ar~G~~v~L~----~~~~~~~ 41 (626)
.|.--..|..|+--+|+ |.+|+++
T Consensus 53 ~~~i~~laElGVv~LLF~iGLE~s~~~L 80 (602)
T PRK03659 53 VDEILHFSELGVVFLMFIIGLELNPSKL 80 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 7999999999999999998977899999
No 428
>PRK06949 short chain dehydrogenase; Provisional
Probab=75.02 E-value=6.2 Score=19.07 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=46.0
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88988942-68999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r 8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK 86 (626)
Q Consensus 8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s 86 (626)
|+|-||+- =|-+-|..+|+.|++|.+...+.+.+.+ ++.|+...|+.. ..++
T Consensus 12 alVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~--------------~~~~i~~~g~~~------~~~~------- 64 (258)
T PRK06949 12 ALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKE--------------LRAEIEAEGGAA------HVVS------- 64 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------------HHHHHHHCCCCE------EEEE-------
T ss_conf 9995857799999999999879999999698899999--------------999999659928------9998-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7855534678784999999999999708996898
Q gi|254780808|r 87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
+ .. .|.+.....+.++.+.+..|++.
T Consensus 65 ------~-Dv-~~~~~v~~~v~~~~~~~G~iDiL 90 (258)
T PRK06949 65 ------L-DV-TDYQSIKAAVAHAETEAGTIDIL 90 (258)
T ss_pred ------C-CC-CCHHHHHHHHHHHHHHHCCCCEE
T ss_conf ------2-68-99999999999999984999899
No 429
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=74.55 E-value=6.3 Score=18.99 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 7889889426899999998589989999807626
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
.|+|-|-|..|+.+|..+.+.|.+|.....+++.
T Consensus 30 ~VaIqG~GnVG~~~A~~l~~~Gakvvv~d~~~~~ 63 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEA 63 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9999898799999999999679979998268899
No 430
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=74.51 E-value=5.5 Score=19.40 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=10.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 88988942689999999858998
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAS 30 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~ 30 (626)
|+|+|||=|+-=++|++++.|++
T Consensus 129 vlilGAGGAarAv~~aL~~~g~~ 151 (283)
T COG0169 129 VLILGAGGAARAVAFALAEAGAK 151 (283)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC
T ss_conf 99989768999999999986998
No 431
>KOG2764 consensus
Probab=74.50 E-value=2 Score=22.51 Aligned_cols=19 Identities=42% Similarity=0.842 Sum_probs=15.3
Q ss_pred CCCCCEEEECCCHHHHHHH
Q ss_conf 7635788988942689999
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAA 21 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA 21 (626)
+++|||+||=||+.|+|.=
T Consensus 65 ~~~yDviilPGG~~g~e~L 83 (247)
T KOG2764 65 DSKYDVIILPGGLPGAETL 83 (247)
T ss_pred CCCCCEEEECCCCHHHHHH
T ss_conf 3566689946996056665
No 432
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=74.30 E-value=6.2 Score=19.07 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCCCCCEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8763578898894-268999999985899899998076260
Q gi|254780808|r 2 INRSYDVIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 2 ~~~~~dViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|||. |+|.||+ -=|-+.|.++|+.|++|.+.-.+.+..
T Consensus 1 mnKv--alITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~ 39 (259)
T PRK12384 1 MNKV--AVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKA 39 (259)
T ss_pred CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 9978--99946886899999999998799999997988999
No 433
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=73.89 E-value=4.7 Score=19.94 Aligned_cols=43 Identities=33% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHCCCCC-CCC
Q ss_conf 5788988942689999999858------998999980762601246-670
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKL------GASTALITHKTSTIGSMS-CNP 48 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~------G~~v~L~~~~~~~~ael~-Cnp 48 (626)
-+|+|||||..|.-.++.+++. ++.+.+++..+..-|.+. ||.
T Consensus 3 ~~~~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~c~~ 52 (556)
T TIGR00562 3 KEVVVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDRVGGWIYSCNT 52 (556)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 41688617613578888876522212477305887246655751342123
No 434
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=73.55 E-value=3.5 Score=20.85 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999970899689800101120258811322203586334454333466431
Q gi|254780808|r 104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 104 s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
...+...++....--....+|+.|..+++.+ .|.+.+|..+.+..||+|+.+..
T Consensus 207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~v~~~~G~~~~ad~VI~a~p~~~ 260 (444)
T pfam01593 207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGV-TVTTVDGEVIEADAVIVTVPLGV 260 (444)
T ss_pred HHHHHHHHHCCCCEEEECCEEEEEEEECCEE-EEEECCCCEEECCEEEECCCHHH
T ss_conf 9999999741598699589778999969969-99988997664486898579888
No 435
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=73.13 E-value=6.8 Score=18.76 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=32.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCC
Q ss_conf 8898894268999999985899899998076-26012466
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSC 46 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~C 46 (626)
|.|||||=.|.-=|--+.+.|+.+..+.... ..+..|.=
T Consensus 15 VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~ 54 (210)
T COG1648 15 VLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIE 54 (210)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
T ss_conf 9998998999999999974699799987874499999998
No 436
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=73.12 E-value=2.9 Score=21.44 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=24.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCC--EEEEEC
Q ss_conf 88988942689999999858998--999980
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAS--TALITH 36 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~ 36 (626)
|.|||||--|+=-|+.+|..-.- +.|+-.
T Consensus 4 isvIGAGfvGaTTAf~lA~KeLard~VLlDi 34 (308)
T TIGR01763 4 ISVIGAGFVGATTAFLLAEKELARDVVLLDI 34 (308)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 8997068612589999986740671689850
No 437
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=72.78 E-value=5.2 Score=19.61 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHHHHHHCCEEEECCHHHHCC-CCHHHHHHHHHH-HCCCE-EEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 754340010011000121102-354565677654-03341-56621330433466666677899999874203
Q gi|254780808|r 325 TIPGLEKVNIIRPGYAIEYDY-INPKELFPTLET-KKISG-LFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394 (626)
Q Consensus 325 ~IPGLEnAef~R~Gy~ieyd~-~~P~~L~~tLe~-k~~~~-LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~ 394 (626)
.+||.-|++-.=-.+++=+-. ++|..+.+.|.+ +-.|+ +=+-|+++|+.=|--|.|+-..|-.-|-....
T Consensus 271 ~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~ 343 (448)
T COG0771 271 KLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFD 343 (448)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 8754524998999999999839998999999973899986227988619889960787888889999997189
No 438
>PRK07201 short chain dehydrogenase; Provisional
Probab=72.21 E-value=7.1 Score=18.62 Aligned_cols=234 Identities=12% Similarity=0.101 Sum_probs=114.7
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCC--------------CCCCCCCCC-------CCCCCCCCC
Q ss_conf 33100001011200544445441011000013443211478--------------766877743-------565780000
Q gi|254780808|r 180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--------------ERLIPFSFM-------TDKITNRQI 238 (626)
Q Consensus 180 ~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d--------------~~~~~~s~~-------~~~~~~~q~ 238 (626)
.++--+.++-++-.|.-+||....+|+-+.-|..+.....- -+..|.+|- .........
T Consensus 166 ~glP~~IyRPg~V~GdS~TG~~~k~Dgpy~~~~ll~~l~~~~p~~~P~~~~~~~~~n~vPVDfV~~Ai~~Ls~~~~~~g~ 245 (663)
T PRK07201 166 CGLPWRIYRPAVVVGDSRTGEMDKIDGPYYFFKVIQKLRAVLPSWTPMLGPEGGRTNIVPVDYVVDALDHLAHADGRDGQ 245 (663)
T ss_pred CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCC
T ss_conf 89987998085762366567644664078999999999863655456667777732251166799999999559887886
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC---CEEEECCCCCCEEEECCCCCC
Q ss_conf 0000123200147776402457541443235642225532123356764--33452---013015787764543477666
Q gi|254780808|r 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--RNGHQ---IFLEPEGLNTDVVYPNGISTA 313 (626)
Q Consensus 239 ~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~--~p~h~---VqLrpE~~~~~~~n~vGFqTs 313 (626)
.-|.+..++..-..+...+....-..-......-+--.+++..+.+--. .+... ..+..-|.-...+....+.|.
T Consensus 246 ~fHL~dP~p~~~~~v~~~~a~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~ 325 (663)
T PRK07201 246 TFHLTDPKPYRVGDIYNIFAEAAGAPRMALRIDAPLFGFLPGAVAAPLLALRPVARVRNAAATDLGIPAEILDFVNYPTT 325 (663)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCE
T ss_conf 78705999863899999988733897544444401322575666540136764777877667652998889864358866
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89889999998754340010011000121102354565677654033415662133043346666667789999987420
Q gi|254780808|r 314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS 393 (626)
Q Consensus 314 L~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~ 393 (626)
+.-.+-.+.++- +|.+--+|--|+ -..++|. -+.|++.+-.+..+.--+.|++-=+|| |++|+=+.+--+.--
T Consensus 326 ~d~~~t~~~l~~-~~i~~p~l~~ya-~~lw~yw-~~~ldp~~~~~~~~~g~L~GKvalITG----ASSGIG~A~A~~LA~ 398 (663)
T PRK07201 326 FDSRETQEALKG-TGIEVPRLASYA-PRLWDYW-ERHLDPDRARDRDLRGPLEGKHVIITG----ASSGIGRATAIKVAE 398 (663)
T ss_pred ECCHHHHHHHCC-CCCCCCCHHHHH-HHHHHHH-HHCCCCCCCCCCCCCCCCCCCEEEECC----CCCHHHHHHHHHHHH
T ss_conf 432657887600-588887745512-7888888-752692001377768887994799938----875999999999998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 334565465321079999998860787
Q gi|254780808|r 394 NKLDCICFSRTDSYIGVMIDDLTSKGV 420 (626)
Q Consensus 394 ~~~~p~~l~R~eaYiGVlIDDLitkg~ 420 (626)
.|-.-++..|++.=+--+.+++-..|-
T Consensus 399 ~GA~Vvl~AR~~e~Le~v~~ei~~~Gg 425 (663)
T PRK07201 399 AGATVFALARDGEKLDELVAEIRARGG 425 (663)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 799899998999999999999995599
No 439
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=71.88 E-value=4.7 Score=19.90 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHH
Q ss_conf 6568999876232737888750288999899999
Q gi|254780808|r 575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNL 608 (626)
Q Consensus 575 gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~ 608 (626)
=+|++....+.+.+|.|+.+-..|+||++.-+.-
T Consensus 29 I~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~ 62 (81)
T smart00341 29 VLPDETLIKMAAALPTNVSELLAIDGVGEEKARR 62 (81)
T ss_pred EECHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHH
T ss_conf 5666899999998879999984689999999999
No 440
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=71.69 E-value=6.2 Score=19.07 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.7
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889889-4268999999985899899998
Q gi|254780808|r 8 VIVIGG-GHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 8 ViVIGa-G~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
|.|||| |+=|+-.|+.++..|+-..|+=
T Consensus 3 V~IiGAaG~VG~~~a~~l~~~~~~~el~L 31 (309)
T cd05294 3 VSIIGASGRVGSATALLLAKEDVVKEINL 31 (309)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999997699999999983799875999
No 441
>KOG1800 consensus
Probab=71.55 E-value=6.5 Score=18.89 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=28.2
Q ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Q ss_conf 78898894268999999985--899899998076
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAK--LGASTALITHKT 38 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~ 38 (626)
-|-|||+|-||-=+|.-+-+ -++.|.++|-.|
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~P 55 (468)
T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLP 55 (468)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 5999888836889999997258997067541577
No 442
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.52 E-value=5.3 Score=19.57 Aligned_cols=69 Identities=17% Similarity=0.384 Sum_probs=37.2
Q ss_pred HHHHHHCCEEEECCHHHHCC-CCHHHHHHHHH-HHCCCE-EEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 54340010011000121102-35456567765-403341-56621330433466666677899999874203
Q gi|254780808|r 326 IPGLEKVNIIRPGYAIEYDY-INPKELFPTLE-TKKISG-LFLAGQINGTTGYEEAAAQGLVAGINSARKSN 394 (626)
Q Consensus 326 IPGLEnAef~R~Gy~ieyd~-~~P~~L~~tLe-~k~~~~-LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~ 394 (626)
+||..|.+=+=-..++-.-. +++......|+ ++-.|+ +=+-|.++|++=|--|-|+=.-|-+.|-....
T Consensus 271 L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V~~~~gv~~iNDSKaTN~~a~~~Al~~~~ 342 (450)
T PRK01368 271 LQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALD 342 (450)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEEECCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 575658999999999999809977777876424677001468999989999971788789999999985689
No 443
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=71.51 E-value=5.5 Score=19.43 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 987635788988942689999999858998999980762601
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
||+ |-+||-|.-|..=|..+.+.|.+|..|.-+++...
T Consensus 1 M~~----Ig~IGlG~MG~~ma~~L~~~g~~v~v~d~~~~~~~ 38 (163)
T pfam03446 1 MAK----IGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVE 38 (163)
T ss_pred CCE----EEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 988----99983679899999999977996999979788779
No 444
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=71.37 E-value=7.5 Score=18.49 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=9.9
Q ss_pred HHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 99999858998999980762601
Q gi|254780808|r 20 AAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 20 AA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
+++........-..++-.++.+.
T Consensus 26 ~~f~~~gl~~~Y~~~~v~~~~l~ 48 (275)
T PRK00258 26 AAAKQLGLDGEYLAFLVPLDDLE 48 (275)
T ss_pred HHHHHCCCCCEEEEEECCHHHHH
T ss_conf 99998699938998878888999
No 445
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=71.11 E-value=5.7 Score=19.33 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=22.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8898894268999999985899899998
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALIT 35 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~ 35 (626)
|.|||+|+=|+-.|+.++..|+- .|+=
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~-el~L 27 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVL 27 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC-EEEE
T ss_conf 98989688899999999857996-7999
No 446
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.06 E-value=7.6 Score=18.44 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=28.2
Q ss_pred EEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 88988942689--9999998589989999807626012
Q gi|254780808|r 8 VIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 8 ViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
|+||=|+-.|+ +.|.++|+.|.+|.|+--+.+.+.+
T Consensus 10 vVvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~ 47 (338)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEG 47 (338)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 89994843499999999999879989999899999999
No 447
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.92 E-value=7.4 Score=18.52 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=24.6
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894-268999999985899899998076260
Q gi|254780808|r 8 VIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
++|.||+ ==|-+.|..+|+.|++|.+.-.+.+..
T Consensus 10 alVTGgs~GIG~a~A~~la~~Ga~V~i~~~~~~~~ 44 (262)
T PRK13394 10 AVVTGAASGIGKEIALELARAGAAVAIADLNQDGA 44 (262)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 99958577899999999998799999997988999
No 448
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=70.66 E-value=7.1 Score=18.65 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=26.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCC--EEEEECCHH
Q ss_conf 88988942689999999858998--999980762
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAS--TALITHKTS 39 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~~ 39 (626)
|.|||+|+=|+-.|+.++..|.- ..|+..+++
T Consensus 3 I~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9999969889999999985799877999818987
No 449
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.59 E-value=6 Score=19.14 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 78898894268999999985899899998076
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
.++|+|.|-.|.-+|-.+.++|++|..+..+.
T Consensus 9 ~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~ 40 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLARQGYQFAVTDTRE 40 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 58999989999999999997889599991899
No 450
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=70.56 E-value=7.7 Score=18.37 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=27.6
Q ss_pred CCCCCCC--EEEE-CC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876357--8898-89-426899999998589989999807
Q gi|254780808|r 1 MINRSYD--VIVI-GG-GHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 1 m~~~~~d--ViVI-Ga-G~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
||++++. |++| || +-=|-+.|.++|+.|++|.+.-.+
T Consensus 1 mM~~~l~gKvalITGas~GIG~aiA~~la~~Ga~V~~~~r~ 41 (260)
T PRK12823 1 MMNQRFAGKVAVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 98888799989994886789999999999879999999694
No 451
>PRK06720 hypothetical protein; Provisional
Probab=70.54 E-value=7.8 Score=18.36 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=50.1
Q ss_pred EEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 889889426--899999998589989999807626012466700221122489999986303999999886314887307
Q gi|254780808|r 8 VIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV 85 (626)
Q Consensus 8 ViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~ 85 (626)
|+||=||=. |-+.|.++|+.|++|.+.-.+.+... .+..|+..+|+.. .
T Consensus 18 valITGa~~GIG~a~A~~la~~Ga~Vvi~d~~~~~~~--------------~~~~~i~~~g~~a------~--------- 68 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ--------------ATVEEITNLGGEA------L--------- 68 (169)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHH--------------HHHHHHHHCCCCE------E---------
T ss_conf 9999897548999999999986998999527636599--------------9999999749953------7---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 87855534678784999999999999708996898
Q gi|254780808|r 86 KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 86 skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
++.. .. .|++...+.+.+.++.+-.|++.
T Consensus 69 ----~~~~-Dv-s~~~~v~~~i~~~~~~~g~iDiL 97 (169)
T PRK06720 69 ----FVSY-DM-EKQGDWQRVISITLNAFSRIDML 97 (169)
T ss_pred ----EEEC-CC-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf ----8975-88-99999999999999975989989
No 452
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=70.49 E-value=7.5 Score=18.45 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=29.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCE--EEEECCHHHCCC
Q ss_conf 9876357889889426899999998589989--999807626012
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAST--ALITHKTSTIGS 43 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~~~~ae 43 (626)
|+++ |.|||-||=|.==|.++-+.|... .-+..+.+++..
T Consensus 5 ~f~~---I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~ 46 (307)
T PRK07502 5 LFDR---VALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRAR 46 (307)
T ss_pred CCCE---EEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 4566---89992787999999999854998579998499999999
No 453
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.35 E-value=6.2 Score=19.06 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 987635788988942689999999858998999980762601246
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
|-+++.||=|||-|-=|.-=|.-+++.|.+|..|.-.++.+.+++
T Consensus 1 m~~~~~~IGiIGLGvMG~nmA~Nl~~~G~~V~vynrt~~k~~~~~ 45 (474)
T PTZ00142 1 MDEGESDIGLIGLAVMGQNLSLNMYSRGFKVSVYNRTTEKVEEFM 45 (474)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 997767466873638679999999978987999779879999999
No 454
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=70.06 E-value=6.7 Score=18.82 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=30.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCC
Q ss_conf 8898894268999999985899--8999980762601246
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMS 45 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~ 45 (626)
|+|||+|.-|+-++..|++.+. ++.+...+.++...++
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~ 40 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALA 40 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf 9898977879999999972899886999989889989877
No 455
>PRK07776 consensus
Probab=70.02 E-value=7.9 Score=18.29 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCCCC--EEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 9876357--889889426--89999999858998999980762601
Q gi|254780808|r 1 MINRSYD--VIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 1 m~~~~~d--ViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
||+-+++ |++|-||-- |-+.|.++|+.|++|.+.-.+.+.+.
T Consensus 1 ~m~~~L~gKv~lITG~~~GIG~aiA~~la~~Ga~V~i~~~~~~~l~ 46 (252)
T PRK07776 1 MTSLDLTGRTAIVTGASRGIGLAIAQALAAAGANVVITARKQEALD 46 (252)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 9988999998999477879999999999987998999979889999
No 456
>PRK07831 short chain dehydrogenase; Provisional
Probab=69.90 E-value=8 Score=18.27 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=28.2
Q ss_pred EEEECCC-H-HHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf 8898894-2-689999999858998999980762601246
Q gi|254780808|r 8 VIVIGGG-H-AGCEAAAVAAKLGASTALITHKTSTIGSMS 45 (626)
Q Consensus 8 ViVIGaG-~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~ 45 (626)
++|.||+ . =|-+.|..+|+.|++|.+.-.+.+.+.|..
T Consensus 19 alVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~ 58 (261)
T PRK07831 19 VVVTAAAGTGIGSATARRALEEGADVVISDIHERRLGETA 58 (261)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 9994999647899999999987998999808777789999
No 457
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=69.70 E-value=7.4 Score=18.49 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=39.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC
Q ss_conf 889889426899999998589989999807626012466700221
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg 52 (626)
|-|||||-=|-.=|.++.++|++|..+..+++.-|.-+|.-.+-|
T Consensus 10 IGIlGgGQLgrMla~aA~~lG~~v~vldp~~~~PA~~va~~~~~~ 54 (377)
T PRK06019 10 IGIIGGGQLGRMLALAAAPLGYKVIVLDPDADCPAAQVADRVIVA 54 (377)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEEC
T ss_conf 999878689999999999789989998489849847837848986
No 458
>KOG2017 consensus
Probab=69.58 E-value=4 Score=20.42 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=26.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 635788988942689999999858998999
Q gi|254780808|r 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTAL 33 (626)
Q Consensus 4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L 33 (626)
++-.|.|||+|=-||-||..+|-.|+-.+=
T Consensus 65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lG 94 (427)
T KOG2017 65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLG 94 (427)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCEEC
T ss_conf 776379981687788789999873778130
No 459
>KOG1201 consensus
Probab=69.52 E-value=5.8 Score=19.28 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=29.0
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 889889426-8999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHA-GCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~A-G~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|-||||- |=+=|++.||+|.++.|+-.+.+..
T Consensus 41 vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~ 75 (300)
T KOG1201 41 VLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN 75 (300)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCH
T ss_conf 99968986078999999997078489995565123
No 460
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=69.46 E-value=8.2 Score=18.21 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 766689889999998754340
Q gi|254780808|r 310 ISTALPEEIQHQFIRTIPGLE 330 (626)
Q Consensus 310 FqTsL~~~~Q~rv~r~IPGLE 330 (626)
-.|.|-...+.+=.++|.||+
T Consensus 220 ~~T~ll~~A~~~G~~~i~Gl~ 240 (272)
T PRK12550 220 AETPLIRYARARGKTVITGAE 240 (272)
T ss_pred CCCHHHHHHHHCCCCEECCHH
T ss_conf 878999999988493627699
No 461
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.38 E-value=8.2 Score=18.20 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=30.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|.|||-||=|.=-|.++.+.|.+|.-+..+++++.
T Consensus 4 I~IiGlGLIGgSla~al~~~~~~V~g~d~~~~~~~ 38 (280)
T PRK07417 4 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 38 (280)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99993185799999999968997999979999999
No 462
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=68.62 E-value=7.4 Score=18.50 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHCCCCCCC
Q ss_conf 5788988942689999999858998-99998076260124667
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCN 47 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~~~ael~Cn 47 (626)
-.|.|||.|--|+|.|--++-.|+. +.|+-.++-...-|..|
T Consensus 20 s~Vli~G~~glg~Ei~Knlvl~Gv~~i~i~D~~~v~~~dl~~q 62 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQ 62 (286)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCC
T ss_conf 9299999876399999999973996599995996886776347
No 463
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=67.93 E-value=8.7 Score=17.99 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCE-EEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 7849999999999997089968-98001011202588113222035863344543334664310
Q gi|254780808|r 97 QADRELYRLAMQREILSQENLD-VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 97 qvDR~~fs~~vt~~l~~~pni~-i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
++|=..|.+.+-+.... ..+ +.+.+|++|..+++.+. +.+.+|..+.+..||+|+|....
T Consensus 131 ~v~p~~~~~al~~~a~~--g~~~~~~~~V~~i~~~g~~~~-v~~~~g~~~~ad~vV~AaG~~s~ 191 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEGWQ-LLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred EECHHHHHHHHHHHHHH--CCEEEECCEEEEEEEECCEEE-EEECCCCEEECCEEEECCCCCHH
T ss_conf 54789999999999972--978993625899999599899-99899988973558985542035
No 464
>PRK12743 acetoin dehydrogenase; Provisional
Probab=67.78 E-value=6.5 Score=18.90 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=25.6
Q ss_pred CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 87635788988942-6899999998589989999807626
Q gi|254780808|r 2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTST 40 (626)
Q Consensus 2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~ 40 (626)
|||- ++|.||+- =|-+.|..+|+.|++|.+...+.+.
T Consensus 1 M~KV--alITGgs~GIG~a~a~~la~~Ga~V~i~~~~~~~ 38 (253)
T PRK12743 1 MAQV--AIVTASDSGIGKACALLLAQQGFDIGITWHSDEE 38 (253)
T ss_pred CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 9998--9990758899999999999879989997489979
No 465
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.73 E-value=8.3 Score=18.16 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=45.7
Q ss_pred EEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
Q ss_conf 88988942689--9999998589989999807626012466700221122489999986303999-99988631488730
Q gi|254780808|r 8 VIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG-RVADAAGIQFRVLN 84 (626)
Q Consensus 8 ViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~-~~aD~~~i~~r~ln 84 (626)
|+||=|+=.|+ +.|..+|+.|.+|.|.--+.+.+.+ +..|++.+|+... ..+|
T Consensus 8 vvlITGASsGIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~--------------~a~e~~~~G~~~~~v~~D---------- 63 (324)
T PRK06139 8 VVVITGASSGIGRATAEAFARRGARLVLAARDEEALFE--------------VAEECRALGAEVLVVPTD---------- 63 (324)
T ss_pred EEEEECHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------------HHHHHHHCCCCEEEEECC----------
T ss_conf 79993825499999999999879989999899999999--------------999999549948999766----------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 787855534678784999999999999708996898
Q gi|254780808|r 85 VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 85 ~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
+ .|.+.....+.+.++.+..|+++
T Consensus 64 -----------V-sd~~~v~~~~~~~~~~~G~IDiL 87 (324)
T PRK06139 64 -----------V-THADQVQALATQAASFLGRIDVW 87 (324)
T ss_pred -----------C-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf -----------7-88578999999999974998788
No 466
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=67.39 E-value=8.9 Score=17.92 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=28.3
Q ss_pred CCCCEEE-ECCCHHHHHHHHHHH-HCCCCEEEEECCH
Q ss_conf 6357889-889426899999998-5899899998076
Q gi|254780808|r 4 RSYDVIV-IGGGHAGCEAAAVAA-KLGASTALITHKT 38 (626)
Q Consensus 4 ~~~dViV-IGaG~AG~EAA~~~A-r~G~~v~L~~~~~ 38 (626)
++||+|| +-||-=-|=+|+.+. +.|.+++++|.++
T Consensus 58 ~~YDCiv~vSGGkDS~y~~~~l~~~~gl~pL~vt~d~ 94 (343)
T TIGR03573 58 GRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDP 94 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9886898688772899999999998299259998359
No 467
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=67.11 E-value=9.1 Score=17.88 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=34.3
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 889889-4268999999985899899998076260124
Q gi|254780808|r 8 VIVIGG-GHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 8 ViVIGa-G~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
+-|||| |+||++-+--+-+||..|+-+..++.++++.
T Consensus 3 IaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~ 40 (211)
T COG2910 3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR 40 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCC
T ss_conf 78995374567999999986798048998076766522
No 468
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.89 E-value=9.1 Score=17.85 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=26.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894268999999985899899998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|.|||+|==|||.+-.+|..|+... .=.+.|++
T Consensus 2 vlvvG~GglG~e~~k~la~~Gvg~i-~ivD~d~i 34 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNI-HVIDMDTI 34 (291)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEE-EEECCCEE
T ss_conf 8999288889999999998489859-99739934
No 469
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.74 E-value=9.1 Score=17.86 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=24.9
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8898894-268999999985899899998076260
Q gi|254780808|r 8 VIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
++|-||+ -=|-+.|..+|+.|++|.+.-.+.+.+
T Consensus 12 alVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~ 46 (253)
T PRK05867 12 ALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL 46 (253)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 99979565999999999998699999997988999
No 470
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=66.72 E-value=7.2 Score=18.59 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|+|+|=|.-|-=.|-.+..+|++|..+|.+|
T Consensus 26 vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDP 56 (162)
T pfam00670 26 AVVCGYGDVGKGCAASLKGQGARVIVTEIDP 56 (162)
T ss_pred EEEECCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 9996787667779998622999899994793
No 471
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.48 E-value=8.9 Score=17.93 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
-+|+|.|-.|--||-.+.++|.+|.++..++
T Consensus 3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 33 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND 33 (459)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999548999999999997899599998989
No 472
>PRK07102 short chain dehydrogenase; Provisional
Probab=66.11 E-value=9.5 Score=17.75 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=29.8
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 889889426-8999999985899899998076260124
Q gi|254780808|r 8 VIVIGGGHA-GCEAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 8 ViVIGaG~A-G~EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
|+|.||+-- |-+-|.++|+.|.+|.|+--+.+.+.++
T Consensus 4 vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~ 41 (243)
T PRK07102 4 ILIIGATSDIARACARRYAAAGARLYLAARDTERLERI 41 (243)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 99915745999999999998799899998988999999
No 473
>PRK06123 short chain dehydrogenase; Provisional
Probab=65.91 E-value=9.5 Score=17.73 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=25.8
Q ss_pred CCCCCCCEEEECCCH--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 987635788988942--6899999998589989999807
Q gi|254780808|r 1 MINRSYDVIVIGGGH--AGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 1 m~~~~~dViVIGaG~--AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
|||| |++|-||- =|-+.|..+|+.|++|.+.-.+
T Consensus 1 m~nK---valITGas~GIG~aia~~la~~Ga~V~i~~~~ 36 (249)
T PRK06123 1 MMRK---VMIITGASRGIGAATALLAAERGYAVCLNYLR 36 (249)
T ss_pred CCCC---EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9998---89996868799999999999879989998089
No 474
>PRK06180 short chain dehydrogenase; Provisional
Probab=65.64 E-value=9.6 Score=17.69 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCCCCCCEEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 987635788988942689--99999985899899998076260124
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
|.+.+ |++|=|+-.|. +.|.++++.|.+|.+..-+.+.+.++
T Consensus 1 M~~~K--vvlITGassGIG~aiA~~l~~~G~~Vi~~~R~~~~l~~l 44 (277)
T PRK06180 1 MASMK--TWLITGVSSGFGRALAQAALAAGHRVVGTVRSAAARRDF 44 (277)
T ss_pred CCCCC--EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 99998--899917873999999999998799999998999999999
No 475
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.64 E-value=9.6 Score=17.69 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCCCCCC----EEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 9876357----889889426--8999999985899899998076260
Q gi|254780808|r 1 MINRSYD----VIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~d----ViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
||.+-|| |++|-||-. |-..|..+|+.|++|.+.-.+.+.+
T Consensus 1 ~m~~~f~l~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~ 47 (265)
T PRK07097 1 FMENMFSLKGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELV 47 (265)
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 96404198999899958576899999999998699999995998999
No 476
>PRK10637 cysG siroheme synthase; Provisional
Probab=65.59 E-value=9.6 Score=17.70 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCCCCC
Q ss_conf 763578898894268999999985899899998076-26012466700
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPA 49 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~Cnps 49 (626)
+++ |+|||||.....=+-.+.+.|..+.++.... +.+..++.+..
T Consensus 12 gk~--vLVVGGG~vA~rK~~~Ll~agA~VtViap~~~~~l~~l~~~g~ 57 (457)
T PRK10637 12 DRD--CLIVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGM 57 (457)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCC
T ss_conf 986--9998998999999999987898799989989989999986698
No 477
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=65.29 E-value=8.4 Score=18.11 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=26.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE----EEEECCHHHC
Q ss_conf 889889426899999998589989----9998076260
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAST----ALITHKTSTI 41 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v----~L~~~~~~~~ 41 (626)
|.|||||==|||-.=-+|-+|+.+ .+.-.+.|+|
T Consensus 2 vlvVGAGgIGCEllKnlal~G~~~~~~G~i~v~D~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCE
T ss_conf 89993776418999999983878689880899708847
No 478
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=64.88 E-value=10 Score=17.59 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=40.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHC-CCCCCCCCCCCCC
Q ss_conf 57889889426899999998589-9899998076260-1246670022112
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTSTI-GSMSCNPAIGGLG 54 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~~-ael~Cnps~gg~a 54 (626)
..|.|=||||=|-+=+-.||... ++|.++.-|-+.| -+-.=.++++|+.
T Consensus 116 ~~v~lFGAGHVG~ALv~~La~lP~~~~~WvD~Re~~F~P~~~p~~~~~gV~ 166 (270)
T TIGR02964 116 PHVVLFGAGHVGRALVRALAPLPECRVTWVDSREEEFYPEDIPLALIDGVA 166 (270)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCC
T ss_conf 817998677188899998616995799986371555487432202547752
No 479
>PRK07062 short chain dehydrogenase; Provisional
Probab=64.42 E-value=10 Score=17.53 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCCCCCC--EEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 9876357--88988942--68999999985899899998076260
Q gi|254780808|r 1 MINRSYD--VIVIGGGH--AGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~d--ViVIGaG~--AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
||+-++. |+||=||- =|-+.|.++|+.|++|.+.-.+.+++
T Consensus 1 mm~~~L~gK~alITG~s~GIG~a~a~~la~~Ga~Vvi~~r~~~~l 45 (265)
T PRK07062 1 MMQIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERL 45 (265)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 997788999899957577999999999998799999997988999
No 480
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=63.94 E-value=7.6 Score=18.43 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57889889426899999998589989999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~ 34 (626)
--|-|.|=|==||.+|.-|||.|++-+.+
T Consensus 22 a~VAicGlGGLGS~~AinLAR~GigkLiL 50 (200)
T TIGR02354 22 ASVAICGLGGLGSNVAINLARAGIGKLIL 50 (200)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 82789701611689999998730220256
No 481
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=63.91 E-value=10 Score=17.47 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=9.6
Q ss_pred HHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 9999985899899998076260124
Q gi|254780808|r 20 AAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 20 AA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
+++....+-..-..++..++.+...
T Consensus 30 ~~~~~~gi~~~Y~~~~v~~~~l~~~ 54 (289)
T PRK12548 30 YSFQKAGLDYAYLAFDVPKEKVADA 54 (289)
T ss_pred HHHHHCCCCCEEEEEECCHHHHHHH
T ss_conf 9999869992999787788899999
No 482
>PRK09897 hypothetical protein; Provisional
Probab=63.49 E-value=11 Score=17.42 Aligned_cols=137 Identities=13% Similarity=0.134 Sum_probs=72.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCC--EEEEECCH-----------HHCCCCCCC------CCCCCCC----HHHHHHHHHH
Q ss_conf 88988942689999999858998--99998076-----------260124667------0022112----2489999986
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGAS--TALITHKT-----------STIGSMSCN------PAIGGLG----KGHLVREIDA 64 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~-----------~~~ael~Cn------ps~gg~a----kg~L~~Ei~a 64 (626)
|-|||||--|.=.-..+-+.+.+ +.+||..- ++-.+|.|| |.|-.+- +.+=...+.+
T Consensus 4 IAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e~ns~~mlaNIas~EIPpi~~t~~~WL~~q~~~~L~~ 83 (535)
T PRK09897 4 IAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQR 83 (535)
T ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHH
T ss_conf 79966786249999998646998269998215667789986854455888750310558851356999987388878987
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCC
Q ss_conf 303999999886314887-307878555346787849999999999997089968980-010112025881132220358
Q gi|254780808|r 65 LDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDN 142 (626)
Q Consensus 65 Lgg~m~~~aD~~~i~~r~-ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g 142 (626)
.| .|.+.+|-|- | |=+- |+. -=|+.|...+...=.+.-.|.|.. -+|+||....+.+........
T Consensus 84 ~~------id~~~l~~rqfl-----PRiL-lGe-Yl~~QF~~Lve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~~~ 150 (535)
T PRK09897 84 YG------VKKETLHDRQFL-----PRIL-LGE-YFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL 150 (535)
T ss_pred CC------CCHHHCCCCCEE-----HHHH-HHH-HHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCEEEEECCCC
T ss_conf 19------983226410100-----4888-889-9999999999999865966999757666764436995599833788
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 633445433346643
Q gi|254780808|r 143 SMIRCSTVVLTTGTF 157 (626)
Q Consensus 143 ~~~~~~~viiatGtf 157 (626)
....-..+|||||-.
T Consensus 151 ~~~~FD~vVIaTGH~ 165 (535)
T PRK09897 151 PSETFDLAVIATGHV 165 (535)
T ss_pred CCCCCEEEEEECCCC
T ss_conf 764320799807987
No 483
>PRK05993 short chain dehydrogenase; Provisional
Probab=63.47 E-value=11 Score=17.42 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=28.0
Q ss_pred CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 87635788988942-68999999985899899998076260124
Q gi|254780808|r 2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSM 44 (626)
Q Consensus 2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael 44 (626)
|+|. |+|-||+- =|-+.|.++|+.|.+|.+..-+.+.+..+
T Consensus 3 m~K~--vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l 44 (277)
T PRK05993 3 MKRS--ILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAAL 44 (277)
T ss_pred CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 9868--99925686999999999998799999997999999999
No 484
>PRK05650 short chain dehydrogenase; Provisional
Probab=63.36 E-value=11 Score=17.40 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=28.9
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf 88988942-6899999998589989999807626012
Q gi|254780808|r 8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGS 43 (626)
Q Consensus 8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ae 43 (626)
|+|-||+- =|-+-|..+|+.|++|.|...+.+.+.+
T Consensus 3 VlITGassGIG~alA~~la~~G~~V~l~~r~~~~l~~ 39 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEE 39 (270)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 9998876499999999999889989999798899999
No 485
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=63.20 E-value=11 Score=17.38 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 8898894268999999985899899998076
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
|-|||||=||-==---|-+.|+.+..+|-+.
T Consensus 5 VaIiG~GPsGLLLGQLLh~~GId~viLEr~~ 35 (393)
T TIGR02360 5 VAIIGAGPSGLLLGQLLHKAGIDTVILERKS 35 (393)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9997577357899999986698589972357
No 486
>PRK08643 acetoin reductase; Validated
Probab=63.09 E-value=11 Score=17.40 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCCCCCEEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 876357889889426--8999999985899899998076260
Q gi|254780808|r 2 INRSYDVIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 2 ~~~~~dViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
||| |.+|-||-. |-+.|..+|+.|++|.+.-.+.+.+
T Consensus 1 mnK---valVTGg~~GIG~aia~~la~~Ga~V~i~d~~~~~~ 39 (256)
T PRK08643 1 MSK---VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETA 39 (256)
T ss_pred CCC---EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 984---999957578899999999998799999996988999
No 487
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=62.82 E-value=7 Score=18.67 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999985046
Q gi|254780808|r 604 AALNLLLIYIKKNTV 618 (626)
Q Consensus 604 AaI~~Ll~~lkk~~~ 618 (626)
+|+++=|-+|.-+++
T Consensus 168 ~DV~vKle~Leen~v 182 (215)
T cd07659 168 QDVLEKLELLDQKHV 182 (215)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999986259
No 488
>PRK06914 short chain dehydrogenase; Provisional
Probab=62.39 E-value=11 Score=17.28 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=27.3
Q ss_pred CCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 8763578898894268--999999985899899998076260
Q gi|254780808|r 2 INRSYDVIVIGGGHAG--CEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG--~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
|+++ |++|-||=.| -+.|..+|+.|.+|.+.--+.+..
T Consensus 1 l~~K--~alITGassGIG~a~A~~la~~G~~V~~~~r~~~~~ 40 (280)
T PRK06914 1 MNKK--IAIITGASSGFGLLTTLELAKKDYLVIATMRNLEKQ 40 (280)
T ss_pred CCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 9519--899907344999999999998799899998988999
No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.34 E-value=8.1 Score=18.24 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEE-EEECCHHHCCC
Q ss_conf 578898894268999999985899899-99807626012
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGS 43 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~~~~~~ae 43 (626)
-.|+|||.|=-||=|+-+|||-|+.-. |+ .+|.+..
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlI--D~D~v~v 67 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLI--DMDDVCV 67 (263)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEE--ECHHCCC
T ss_conf 948999458453999999998188818997--1201022
No 490
>KOG1346 consensus
Probab=61.83 E-value=6.6 Score=18.88 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=40.0
Q ss_pred HHHHCCCEEEEEEEEE----------CCCHHHHHHHHHHHHHHHHHHHCC---CCCC--CCCCCCCCH--HHHHHHHHHC
Q ss_conf 6540334156621330----------433466666677899999874203---3456--546532107--9999998860
Q gi|254780808|r 355 LETKKISGLFLAGQIN----------GTTGYEEAAAQGLVAGINSARKSN---KLDC--ICFSRTDSY--IGVMIDDLTS 417 (626)
Q Consensus 355 Le~k~~~~LffAGQI~----------GteGYeEAAAqGl~AGiNa~~~~~---~~~p--~~l~R~eaY--iGVlIDDLit 417 (626)
-+++...|+|.||-+. -||-.+-|--+|-+||-|.+--.+ .+.. --|+-+-+| ||..=--|-|
T Consensus 472 aeL~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSLpT 551 (659)
T KOG1346 472 AELKARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPT 551 (659)
T ss_pred HEEECCCCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCC
T ss_conf 20001543365042445405311100003244324502002654444568764445025368863461122000367874
Q ss_pred CCC
Q ss_conf 787
Q gi|254780808|r 418 KGV 420 (626)
Q Consensus 418 kg~ 420 (626)
-||
T Consensus 552 VgV 554 (659)
T KOG1346 552 VGV 554 (659)
T ss_pred CEE
T ss_conf 145
No 491
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=61.46 E-value=11 Score=17.17 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
|.|++.|-..+.+...+-++|+++.++--++|+.+
T Consensus 4 vLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s 38 (109)
T pfam00289 4 VLVANRGEIAVRIIRALRELGIETVAVNSNPDTVS 38 (109)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCC
T ss_conf 99988879999999999986997999963344152
No 492
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=60.62 E-value=12 Score=17.07 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=25.3
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf 88988942-689999999858998999980762601
Q gi|254780808|r 8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIG 42 (626)
Q Consensus 8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~a 42 (626)
++|.||+- =|-+.|-++|+.|++|.+.-.+.+.+.
T Consensus 17 alITGgs~GIG~~ia~~la~~Ga~V~i~~r~~~~~~ 52 (259)
T PRK06124 17 ALVTGSARGLGLEIARALAEAGAHVLVNGRNAARVE 52 (259)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999286748999999999987999999969889999
No 493
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=60.58 E-value=9.9 Score=17.62 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=4.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 23564222553
Q gi|254780808|r 267 IKSYGPRYCPS 277 (626)
Q Consensus 267 ~~~~gprycPs 277 (626)
..|.|.....+
T Consensus 66 ~~g~G~e~y~~ 76 (392)
T PRK02201 66 TVGSGLEFYTS 76 (392)
T ss_pred EECCCEEEECC
T ss_conf 74245188536
No 494
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.53 E-value=12 Score=17.06 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7635788988942689999999858998999980
Q gi|254780808|r 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36 (626)
Q Consensus 3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~ 36 (626)
+|+ |.|+|.|-.|--||-.|.+.|..+.+..-
T Consensus 8 gkk--v~V~GlG~sG~aaa~~L~~~g~~~~v~~~ 39 (468)
T PRK04690 8 GKR--VALWGWGREGRAAYRALRAQLPAQPLTVF 39 (468)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 797--99983478799999999966990499972
No 495
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.48 E-value=12 Score=17.06 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=27.5
Q ss_pred CCCCCCCEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf 987635788988942--68999999985899899998076260
Q gi|254780808|r 1 MINRSYDVIVIGGGH--AGCEAAAVAAKLGASTALITHKTSTI 41 (626)
Q Consensus 1 m~~~~~dViVIGaG~--AG~EAA~~~Ar~G~~v~L~~~~~~~~ 41 (626)
||.-+=.|++|=||- =|-+.|..+|+.|++|.+.-.+.+.+
T Consensus 1 Mm~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l 43 (254)
T PRK07478 1 MMLLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAEL 43 (254)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 9888998799958876899999999998799999997988999
No 496
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=60.24 E-value=12 Score=17.03 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 98763578898894268999999985899899998076
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~ 38 (626)
+-+++ |.|||+|--|.-+|-.+...|+.-..++-|.
T Consensus 176 l~~~~--vLviGaGem~~l~~~~L~~~g~~~i~v~nRt 211 (311)
T cd05213 176 LKGKK--VLVIGAGEMGELAAKHLAAKGVAEITIANRT 211 (311)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 21167--9998687999999999996599825997686
No 497
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=59.49 E-value=12 Score=16.94 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCCEEEE-CCCHHHHHHHH-HHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 763578898-89426899999-9985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r 3 NRSYDVIVI-GGGHAGCEAAA-VAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF 80 (626)
Q Consensus 3 ~~~~dViVI-GaG~AG~EAA~-~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~ 80 (626)
.+.|+++++ |-|.+|-|||. .+-..|-+|+. |||-. .|--+..++...++++
T Consensus 53 ~~~~~~v~~~gSGT~amEaai~nl~~~gdkvLv------------~~~G~--------------FG~R~~~ia~~~g~~v 106 (368)
T PRK13479 53 EEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLV------------PDNGA--------------YGARIAKIAEYLGIAH 106 (368)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEE------------ECCCH--------------HHHHHHHHHHHHCCCE
T ss_conf 887079997168679999999615479997999------------81792--------------7999999999819975
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8730787855534678784999999999999708996898
Q gi|254780808|r 81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 (626)
Q Consensus 81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~ 120 (626)
.+++..-|-++..- .+.+.|+++|.++.+
T Consensus 107 ~~l~~~~g~~~~~~-----------~ve~~L~~~~~~~~v 135 (368)
T PRK13479 107 VVLDTGEDEPPDAA-----------AVEAALAADPRITHV 135 (368)
T ss_pred EEEECCCCCCCCHH-----------HHHHHHHHCCCCCEE
T ss_conf 99878999988999-----------999999749996789
No 498
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=59.32 E-value=12 Score=16.92 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=0.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC
Q ss_conf 876357889889426899999998589989999807626012466700
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA 49 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps 49 (626)
|+ |.|||.|--|-=-|.-+|..|..|..+...++++..|-|.-|
T Consensus 1 Mk----I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~ 44 (414)
T COG1004 1 MK----ITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGIS 44 (414)
T ss_pred CC----EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC
T ss_conf 91----589888556887899998709848999578899999867999
No 499
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=58.77 E-value=13 Score=16.86 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876357889889426899999998589989999807
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK 37 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~ 37 (626)
+-+++ |.|||+|--|.-+|-.+..+|++-..++-|
T Consensus 180 l~~~~--vlviGaGem~~l~~k~L~~~g~~~i~v~nR 214 (429)
T PRK00045 180 LSGKK--VLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (429)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 12065--999767489999999998559984999758
No 500
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=58.77 E-value=5.2 Score=19.58 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=0.0
Q ss_pred EEEEECCHHHCCCCCC--CCCCCCC--------CHHHHHHHHHHH
Q ss_conf 9999807626012466--7002211--------224899999863
Q gi|254780808|r 31 TALITHKTSTIGSMSC--NPAIGGL--------GKGHLVREIDAL 65 (626)
Q Consensus 31 v~L~~~~~~~~ael~C--nps~gg~--------akg~L~~Ei~aL 65 (626)
++++=+..=+.|-|.| ||+|||. ||+..+|=|.+|
T Consensus 4 ~AiVGQe~LK~ALLL~Av~P~iGGVLirG~KGTAKSTaaR~L~~L 48 (688)
T TIGR02442 4 TAIVGQEDLKLALLLNAVNPRIGGVLIRGEKGTAKSTAARGLAAL 48 (688)
T ss_pred CCCCCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 422142798653210025266370788778886278988848761
Done!