Query         gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 626
No_of_seqs    205 out of 2102
Neff          6.3 
Searched_HMMs 39220
Date          Tue May 31 15:31:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780808.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK05192 tRNA uridine 5-carbox 100.0       0       0 1832.4  46.2  616    1-619     2-620 (621)
  2 COG0445 GidA Flavin-dependent  100.0       0       0 1769.3  36.3  617    2-619     1-620 (621)
  3 KOG2311 consensus              100.0       0       0 1531.4  30.9  616    4-623    27-658 (679)
  4 TIGR00136 gidA glucose-inhibit 100.0       0       0 1125.9  32.6  611    6-616     1-629 (630)
  5 pfam01134 GIDA Glucose inhibit 100.0       0       0 1106.2  24.5  391    7-397     1-391 (391)
  6 PRK05335 tRNA (uracil-5-)-meth 100.0       0       0  878.9  22.4  364    1-417     1-388 (434)
  7 TIGR00137 gid gid protein; Int 100.0       0       0  833.3  13.8  395    7-475     2-430 (444)
  8 COG1206 Gid NAD(FAD)-utilizing 100.0       0       0  771.4  16.3  365    1-418     1-391 (439)
  9 PRK09078 sdhA succinate dehydr  99.4 6.8E-12 1.7E-16  104.0  12.5   37    1-37      8-44  (598)
 10 PRK07803 sdhA succinate dehydr  99.3 7.7E-12   2E-16  103.6   9.2  155    3-159     6-214 (631)
 11 PRK08626 fumarate reductase fl  99.3   4E-11   1E-15   98.5  12.4   61  335-398   364-434 (657)
 12 PRK06452 sdhA succinate dehydr  99.3 7.7E-12   2E-16  103.6   8.4  153    3-158     3-198 (566)
 13 COG1053 SdhA Succinate dehydro  99.3 1.1E-10 2.7E-15   95.5  13.1  157    1-158     2-202 (562)
 14 PRK08205 sdhA succinate dehydr  99.3 2.3E-10 5.8E-15   93.2  14.7   36    1-37      1-36  (583)
 15 PRK08958 sdhA succinate dehydr  99.3 6.9E-11 1.8E-15   96.9  11.6   35    3-37      5-39  (588)
 16 PRK09231 fumarate reductase fl  99.3 1.1E-10 2.9E-15   95.3  12.8  150    5-159     4-197 (582)
 17 PRK07057 sdhA succinate dehydr  99.3 6.1E-12 1.6E-16  104.3   6.2   37    1-37      8-44  (591)
 18 PRK09077 L-aspartate oxidase;   99.3 4.3E-10 1.1E-14   91.2  15.4  150    3-158     6-207 (535)
 19 COG2081 Predicted flavoprotein  99.3 2.6E-11 6.7E-16   99.9   9.0  339    4-393     2-407 (408)
 20 PRK06854 adenylylsulfate reduc  99.3 3.3E-09 8.5E-14   84.9  19.8  155    1-157     2-197 (610)
 21 PRK08641 sdhA succinate dehydr  99.3 2.4E-10 6.1E-15   93.0  13.6   35    4-38      2-36  (589)
 22 PTZ00139 succinate dehydrogena  99.3 1.6E-10 4.2E-15   94.2  12.3  153    2-159    31-235 (622)
 23 PRK08275 putative oxidoreducta  99.2   1E-10 2.6E-15   95.6  10.1  150    5-157     9-199 (554)
 24 pfam03486 HI0933_like HI0933-l  99.2 2.7E-10 6.8E-15   92.7  10.9  142    6-157     1-163 (405)
 25 PRK06069 sdhA succinate dehydr  99.2 4.7E-10 1.2E-14   90.9  12.0  156    2-158     2-201 (582)
 26 PRK05945 sdhA succinate dehydr  99.2 2.2E-10 5.6E-15   93.3   8.8  154    5-159     3-198 (575)
 27 PRK06263 sdhA succinate dehydr  99.1 3.8E-10 9.7E-15   91.6   8.6  150    5-158     7-197 (539)
 28 PRK10157 putative oxidoreducta  99.1 2.6E-11 6.5E-16   99.9   2.0  141    1-156     1-162 (428)
 29 PRK05976 dihydrolipoamide dehy  99.1 3.1E-10   8E-15   92.2   7.5  136    2-157     1-149 (464)
 30 PRK06481 fumarate reductase fl  99.1 2.8E-09 7.2E-14   85.4  11.3  159    3-162    58-254 (506)
 31 PRK07573 sdhA succinate dehydr  99.1 6.4E-09 1.6E-13   82.9  12.8  149    4-158    32-230 (638)
 32 PRK07395 L-aspartate oxidase;   99.1 3.3E-09 8.5E-14   84.9  11.1  148    2-158     7-198 (556)
 33 PRK06292 dihydrolipoamide dehy  99.0 4.8E-09 1.2E-13   83.8  10.4  138    3-156     1-140 (460)
 34 PTZ00052 thioredoxin reductase  99.0 6.9E-09 1.8E-13   82.6  11.0  140    2-157    38-195 (541)
 35 PRK06370 mercuric reductase; V  99.0 6.8E-10 1.7E-14   89.8   5.8  136    3-157     2-143 (459)
 36 PRK06116 glutathione reductase  99.0 1.9E-09 4.8E-14   86.7   8.1  136    2-157     1-142 (450)
 37 PRK10015 hypothetical protein;  99.0 9.8E-11 2.5E-15   95.8   1.4  145    1-156     1-162 (429)
 38 PRK06327 dihydrolipoamide dehy  99.0   2E-09 5.1E-14   86.5   8.1  140    2-157     1-156 (475)
 39 PRK07818 dihydrolipoamide dehy  99.0   3E-09 7.8E-14   85.2   8.8  137    2-157     1-146 (467)
 40 PRK06175 L-aspartate oxidase;   99.0 5.6E-09 1.4E-13   83.3   9.7  151    2-159     1-190 (433)
 41 PRK10262 thioredoxin reductase  99.0 3.6E-10 9.2E-15   91.8   3.3  112    3-156     4-115 (321)
 42 TIGR03143 AhpF_homolog putativ  98.9 2.8E-09 7.2E-14   85.4   7.2  115    2-159     1-115 (555)
 43 PRK05249 soluble pyridine nucl  98.9 7.1E-09 1.8E-13   82.6   9.0  142    1-156     1-148 (465)
 44 PRK08010 pyridine nucleotide-d  98.9 1.2E-08   3E-13   81.1  10.1  124    3-156     1-129 (441)
 45 PRK08020 ubiF 2-octaprenyl-3-m  98.9 1.7E-08 4.3E-13   79.9  10.7  152    1-157     1-168 (391)
 46 PRK07843 3-ketosteroid-delta-1  98.9 3.2E-08 8.3E-13   77.9  11.8   39    1-39      1-39  (560)
 47 COG0492 TrxB Thioredoxin reduc  98.9 3.1E-09 7.9E-14   85.1   6.5  113    3-158     1-115 (305)
 48 PRK06416 dihydrolipoamide dehy  98.9 1.1E-08 2.9E-13   81.2   9.0  140    4-156     3-144 (462)
 49 TIGR03140 AhpF alkyl hydropero  98.9 7.2E-09 1.8E-13   82.6   7.7  113    4-159   211-324 (515)
 50 PRK06115 dihydrolipoamide dehy  98.9 5.7E-09 1.4E-13   83.3   7.2  138    3-157     1-147 (466)
 51 PRK06467 dihydrolipoamide dehy  98.9 9.5E-09 2.4E-13   81.7   8.2  137    2-156     1-146 (472)
 52 PRK07494 2-octaprenyl-6-methox  98.9 1.2E-08   3E-13   81.1   8.5  147    1-156     1-163 (386)
 53 PRK13748 putative mercuric red  98.8 1.4E-08 3.6E-13   80.4   7.9  136    3-157    96-243 (561)
 54 TIGR01812 sdhA_frdA_Gneg succi  98.8 3.5E-09   9E-14   84.7   4.7  389    7-485     1-537 (636)
 55 PRK08274 tricarballylate dehyd  98.8 5.3E-08 1.3E-12   76.4  10.4  155    3-161     2-190 (456)
 56 PRK12842 putative succinate de  98.8 9.4E-08 2.4E-12   74.6  11.3   38    1-38      1-38  (567)
 57 PRK08849 2-octaprenyl-3-methyl  98.8 9.4E-08 2.4E-12   74.6  11.0  151    4-157     2-166 (384)
 58 PRK07251 pyridine nucleotide-d  98.8 7.2E-08 1.8E-12   75.4  10.2  123    4-157     2-129 (438)
 59 PRK07512 L-aspartate oxidase;   98.8 9.3E-08 2.4E-12   74.6  10.6  150    4-158     8-197 (507)
 60 PRK12844 3-ketosteroid-delta-1  98.8 1.4E-07 3.5E-12   73.5  11.5   37    3-39      4-40  (552)
 61 PRK11259 solA N-methyltryptoph  98.8 2.9E-08 7.5E-13   78.2   8.1  155    4-161     2-207 (377)
 62 PRK12839 hypothetical protein;  98.8 1.1E-07 2.8E-12   74.1  10.9   37    2-38      6-42  (574)
 63 pfam01266 DAO FAD dependent ox  98.8 2.7E-08 6.8E-13   78.5   7.1  149    7-162     1-206 (309)
 64 COG0644 FixC Dehydrogenases (f  98.8   3E-08 7.6E-13   78.1   7.2  144    4-157     2-151 (396)
 65 PRK07121 hypothetical protein;  98.8   3E-07 7.6E-12   71.0  12.3  159    3-162    18-243 (491)
 66 COG0654 UbiH 2-polyprenyl-6-me  98.7 1.3E-07 3.4E-12   73.5  10.2  145    4-157     1-161 (387)
 67 PRK07845 flavoprotein disulfid  98.7 5.7E-08 1.4E-12   76.2   8.2  137    6-156     2-150 (467)
 68 PRK08401 L-aspartate oxidase;   98.7   1E-08 2.6E-13   81.4   4.4  144    6-159     2-176 (464)
 69 PRK12843 putative FAD-binding   98.7 2.2E-07 5.6E-12   72.0  11.0   35    4-38     13-47  (576)
 70 KOG1298 consensus               98.7 9.6E-09 2.5E-13   81.6   3.9  150    3-159    43-209 (509)
 71 COG0029 NadB Aspartate oxidase  98.7 1.9E-07 4.9E-12   72.4  10.3  169    2-212     1-216 (518)
 72 PRK06134 putative FAD-binding   98.7 2.2E-07 5.6E-12   72.0  10.6   37    3-39      8-44  (579)
 73 pfam00890 FAD_binding_2 FAD bi  98.7 2.2E-07 5.6E-12   72.0  10.6  154    7-161     1-206 (401)
 74 TIGR02032 GG-red-SF geranylger  98.7   4E-08   1E-12   77.3   6.6  146    6-158     1-172 (343)
 75 TIGR01816 sdhA_forward succina  98.7 3.7E-08 9.5E-13   77.5   6.2  397    4-494     1-512 (615)
 76 PRK07608 hypothetical protein;  98.7   2E-07 5.2E-12   72.2   9.9  151    2-156     2-166 (389)
 77 PRK12834 putative FAD-binding   98.7 4.9E-07 1.3E-11   69.5  11.7  156    5-163     2-230 (549)
 78 PRK07045 putative monooxygenas  98.7 1.8E-08 4.5E-13   79.8   4.2  155    1-158     1-165 (388)
 79 PRK09126 hypothetical protein;  98.7 1.4E-07 3.5E-12   73.4   8.8  150    1-157     1-166 (392)
 80 PRK06185 hypothetical protein;  98.7 1.6E-08 4.1E-13   80.0   3.6  146    1-156     2-167 (409)
 81 PRK12837 3-ketosteroid-delta-1  98.7 5.3E-07 1.4E-11   69.3  11.2  157    3-162     7-241 (515)
 82 pfam07992 Pyr_redox_2 Pyridine  98.7 1.8E-07 4.7E-12   72.5   8.7  104    7-156     1-105 (277)
 83 PRK08071 L-aspartate oxidase;   98.7 2.1E-07 5.4E-12   72.1   8.9  148    4-159     2-191 (510)
 84 KOG2820 consensus               98.6   7E-08 1.8E-12   75.5   6.4  154    2-163     4-217 (399)
 85 PRK11101 glpA sn-glycerol-3-ph  98.6 1.5E-07 3.8E-12   73.2   8.1  159    1-161     1-213 (545)
 86 PRK08850 2-octaprenyl-6-methox  98.6 3.7E-07 9.3E-12   70.4   9.9  149    2-157     1-167 (405)
 87 COG1148 HdrA Heterodisulfide r  98.6 4.1E-08 1.1E-12   77.1   4.9  110  270-394   428-545 (622)
 88 PRK12835 3-ketosteroid-delta-1  98.6 6.6E-07 1.7E-11   68.6  11.0   37    3-39      9-45  (584)
 89 PRK01747 mnmC 5-methylaminomet  98.6 3.2E-07 8.2E-12   70.8   9.2  148    6-158   257-458 (660)
 90 TIGR01790 carotene-cycl lycope  98.6 1.2E-07 3.1E-12   73.8   7.0  169    7-193     1-180 (419)
 91 PRK05732 2-octaprenyl-6-methox  98.6 5.5E-07 1.4E-11   69.1   9.5  148    3-156     1-167 (395)
 92 COG1249 Lpd Pyruvate/2-oxoglut  98.6 2.1E-07 5.5E-12   72.1   7.4  143    2-157     1-146 (454)
 93 PRK08013 hypothetical protein;  98.6 9.7E-07 2.5E-11   67.4  10.7  153    4-157     2-167 (400)
 94 PRK07364 2-octaprenyl-6-methox  98.6 3.7E-07 9.5E-12   70.4   8.3  151    1-156    13-178 (413)
 95 PRK08774 consensus              98.6 3.4E-07 8.6E-12   70.6   7.8  147    2-156     1-168 (402)
 96 PRK07804 L-aspartate oxidase;   98.5 9.3E-08 2.4E-12   74.6   4.7  150    4-157    14-201 (533)
 97 PRK11445 putative oxidoreducta  98.5 5.3E-07 1.4E-11   69.3   8.5  144    5-157     1-156 (348)
 98 PRK07846 mycothione/glutathion  98.5 7.2E-07 1.8E-11   68.3   8.6  129    5-157     1-141 (453)
 99 TIGR03452 mycothione_red mycot  98.5 3.4E-07 8.7E-12   70.6   6.2  129    4-156     1-141 (452)
100 PRK12845 3-ketosteroid-delta-1  98.5 2.2E-06 5.7E-11   64.8  10.3   35    3-38     14-48  (566)
101 PRK11749 putative oxidoreducta  98.5 3.1E-06   8E-11   63.8  10.9   45  352-397   413-458 (460)
102 PTZ00306 NADH-dependent fumara  98.5 6.1E-06 1.6E-10   61.7  11.9   58  340-397   828-906 (1167)
103 PRK08163 salicylate hydroxylas  98.4   4E-06   1E-10   63.1   9.9  148    2-157     1-165 (396)
104 TIGR00551 nadB L-aspartate oxi  98.4 6.9E-06 1.8E-10   61.3  10.5  362    5-449     2-466 (546)
105 PRK08773 2-octaprenyl-3-methyl  98.4 8.7E-06 2.2E-10   60.6  10.9  150    1-157     1-168 (392)
106 COG0665 DadA Glycine/D-amino a  98.4 3.1E-06   8E-11   63.8   8.5  157    2-162     1-216 (387)
107 PRK11728 hypothetical protein;  98.4 4.9E-06 1.2E-10   62.4   9.4  152    5-158     2-205 (400)
108 PRK12771 putative glutamate sy  98.3 5.5E-06 1.4E-10   62.1   9.5   43  358-400   403-446 (560)
109 PRK13800 putative oxidoreducta  98.3 8.2E-07 2.1E-11   67.9   5.3  146    4-157    12-204 (894)
110 TIGR01377 soxA_mon sarcosine o  98.3 5.1E-07 1.3E-11   69.4   4.1  146    6-163     1-213 (401)
111 pfam01946 Thi4 Thi4 family. Th  98.3 1.9E-06 4.9E-11   65.3   6.7  132    5-156    17-162 (229)
112 PRK00711 D-amino acid dehydrog  98.3   1E-06 2.5E-11   67.3   5.2   63   98-162   198-261 (416)
113 COG0578 GlpA Glycerol-3-phosph  98.3 3.9E-06   1E-10   63.1   8.2  155    1-163     8-230 (532)
114 TIGR01350 lipoamide_DH dihydro  98.3 9.5E-07 2.4E-11   67.5   4.9  130    5-157     1-146 (481)
115 PRK04176 ribulose-1,5-biphosph  98.3 6.5E-06 1.6E-10   61.6   9.1  132    5-156    25-171 (257)
116 PRK12409 D-amino acid dehydrog  98.3 5.9E-06 1.5E-10   61.8   8.8   32    7-38      3-34  (410)
117 PRK06617 2-octaprenyl-6-methox  98.3 5.7E-06 1.5E-10   61.9   8.6  146    6-156     2-158 (374)
118 TIGR03169 Nterm_to_SelD pyridi  98.3 4.8E-07 1.2E-11   69.6   3.0  104    7-158     1-107 (364)
119 TIGR01292 TRX_reduct thioredox  98.3 4.3E-06 1.1E-10   62.8   7.3  300    6-393     1-321 (321)
120 PRK06912 acoL dihydrolipoamide  98.3   5E-06 1.3E-10   62.3   7.7  135    7-157     2-143 (458)
121 COG2509 Uncharacterized FAD-de  98.2 1.6E-05   4E-10   58.8   9.8  350    1-393    14-483 (486)
122 PRK05714 2-octaprenyl-3-methyl  98.2 6.5E-06 1.7E-10   61.5   7.7  147    5-156     2-166 (405)
123 PRK06834 hypothetical protein;  98.2 3.7E-06 9.4E-11   63.3   6.5  139    4-156     2-154 (488)
124 TIGR03329 Phn_aa_oxid putative  98.2 2.1E-05 5.2E-10   58.0   9.6  112  318-445   323-437 (460)
125 PRK06183 mhpA 3-(3-hydroxyphen  98.2   7E-06 1.8E-10   61.3   7.1  147    3-156    10-174 (554)
126 PRK04965 nitric oxide reductas  98.2 8.8E-06 2.2E-10   60.6   7.5  105    2-156     1-109 (378)
127 COG1635 THI4 Ribulose 1,5-bisp  98.2 6.6E-06 1.7E-10   61.5   6.9  133    5-156    30-176 (262)
128 PRK07236 hypothetical protein;  98.2 8.5E-06 2.2E-10   60.7   7.3  144    1-157     4-153 (386)
129 PRK08948 consensus              98.2 3.7E-05 9.5E-10   56.1  10.5  145    6-156     1-164 (392)
130 PRK06126 hypothetical protein;  98.2 2.4E-05 6.2E-10   57.5   9.4  149    1-156     2-186 (545)
131 COG2072 TrkA Predicted flavopr  98.1 1.1E-05 2.7E-10   60.0   7.2  346    1-379     4-396 (443)
132 COG0579 Predicted dehydrogenas  98.1 1.5E-05 3.9E-10   58.9   8.0  159    3-161     1-214 (429)
133 PTZ00153 lipoamide dehydrogena  98.1 1.2E-05 3.2E-10   59.6   7.2  142    4-156   122-292 (673)
134 PRK02106 choline dehydrogenase  98.1 4.3E-06 1.1E-10   62.8   4.5   37    1-37      1-38  (555)
135 PRK05329 anaerobic glycerol-3-  98.1 4.5E-06 1.1E-10   62.7   4.5   35    5-39      2-36  (425)
136 COG1233 Phytoene dehydrogenase  98.1 4.8E-06 1.2E-10   62.4   4.5   35    4-38      2-36  (487)
137 TIGR03378 glycerol3P_GlpB glyc  98.1 5.1E-06 1.3E-10   62.3   4.4   33    6-38      1-33  (419)
138 PRK09754 phenylpropionate diox  98.0 3.7E-05 9.4E-10   56.2   8.0  107    1-157     1-111 (400)
139 PRK06475 salicylate hydroxylas  98.0 1.2E-05 2.9E-10   59.8   5.4  142    5-156     2-165 (400)
140 PRK12266 glpD glycerol-3-phosp  98.0 9.8E-06 2.5E-10   60.3   4.9   37    2-38      3-39  (503)
141 pfam05834 Lycopene_cycl Lycope  98.0 5.9E-06 1.5E-10   61.8   3.7  136    7-157     1-141 (374)
142 PRK13369 glycerol-3-phosphate   98.0 1.1E-05 2.9E-10   59.8   4.8   36    3-38      4-39  (503)
143 TIGR03364 HpnW_proposed FAD de  98.0 9.2E-06 2.3E-10   60.5   4.2   33    6-38      1-33  (365)
144 PRK07333 2-octaprenyl-6-methox  97.9   9E-05 2.3E-09   53.4   8.9  145    6-157     2-166 (403)
145 PRK05675 sdhA succinate dehydr  97.9 0.00033 8.4E-09   49.4  10.8   41  358-398   360-410 (570)
146 PRK12770 putative glutamate sy  97.9 3.7E-05 9.5E-10   56.1   6.0   73  302-396   275-350 (350)
147 TIGR03385 CoA_CoA_reduc CoA-di  97.9 0.00013 3.2E-09   52.4   8.7   95    7-159   139-234 (427)
148 COG3075 GlpB Anaerobic glycero  97.9 2.6E-05 6.6E-10   57.3   5.1   58    5-67      2-69  (421)
149 pfam01494 FAD_binding_3 FAD bi  97.9 1.4E-05 3.6E-10   59.1   3.7  146    5-157     1-161 (349)
150 KOG1335 consensus               97.9 6.9E-05 1.8E-09   54.3   7.2  133    4-156    38-183 (506)
151 PRK07208 hypothetical protein;  97.8 2.5E-05 6.4E-10   57.3   4.8   49    1-52      1-49  (474)
152 TIGR01988 Ubi-OHases Ubiquinon  97.8 9.5E-05 2.4E-09   53.3   7.1  151    7-159     1-191 (445)
153 PRK06847 hypothetical protein;  97.8 5.6E-05 1.4E-09   54.9   5.7  139    8-158     7-163 (375)
154 PRK09564 coenzyme A disulfide   97.8 0.00023 5.8E-09   50.6   8.7  105    8-156     3-113 (443)
155 TIGR02352 thiamin_ThiO glycine  97.8 0.00026 6.6E-09   50.2   8.9  150    8-159     1-209 (357)
156 TIGR02053 MerA mercuric reduct  97.8 0.00034 8.7E-09   49.3   9.4  135    6-156     1-147 (494)
157 COG1252 Ndh NADH dehydrogenase  97.8  0.0001 2.6E-09   53.0   6.8  305    1-397     1-335 (405)
158 pfam04820 Trp_halogenase Trypt  97.7 0.00012   3E-09   52.6   7.0   58   97-155   153-211 (457)
159 PRK06996 hypothetical protein;  97.7 8.9E-05 2.3E-09   53.4   6.2  146    1-156     7-172 (397)
160 TIGR03467 HpnE squalene-associ  97.7 4.5E-05 1.1E-09   55.6   4.4   31    8-38      1-31  (430)
161 TIGR03219 salicylate_mono sali  97.7 0.00028 7.1E-09   50.0   8.3  137    7-158     2-159 (414)
162 PRK07538 hypothetical protein;  97.7 0.00031 7.8E-09   49.6   8.4  140    7-156     2-163 (413)
163 TIGR01813 flavo_cyto_c flavocy  97.7 0.00016 4.1E-09   51.6   6.9  152    7-163     1-214 (487)
164 PRK05868 hypothetical protein;  97.7 0.00011 2.8E-09   52.8   6.0  137    8-156     4-158 (372)
165 PRK08132 hypothetical protein;  97.7  0.0004   1E-08   48.8   8.8  142    4-156    22-183 (549)
166 KOG0029 consensus               97.7 7.6E-05 1.9E-09   54.0   4.9   35    4-38     14-48  (501)
167 PRK06184 hypothetical protein;  97.7 8.7E-05 2.2E-09   53.5   5.1   40    1-40      1-41  (503)
168 TIGR02023 BchP-ChlP geranylger  97.6 5.5E-05 1.4E-09   55.0   3.8  115    6-132     1-126 (408)
169 KOG2614 consensus               97.6 0.00072 1.8E-08   47.0   9.4  141    7-157     4-162 (420)
170 PRK13512 coenzyme A disulfide   97.6 0.00038 9.7E-09   49.0   7.6  107    8-156     4-115 (438)
171 COG3634 AhpF Alkyl hydroperoxi  97.6  0.0001 2.6E-09   53.0   4.7  109    4-159   210-326 (520)
172 PRK11883 protoporphyrinogen ox  97.6 0.00011 2.9E-09   52.7   4.7   31    8-38      3-35  (452)
173 TIGR01984 UbiH 2-polyprenyl-6-  97.6 0.00027 6.9E-09   50.0   6.5  146    7-156     1-192 (425)
174 PRK07233 hypothetical protein;  97.5 0.00011 2.9E-09   52.7   4.5   31    8-38      2-32  (430)
175 PRK07588 hypothetical protein;  97.5 0.00017 4.3E-09   51.5   5.3  136    8-157     3-157 (391)
176 COG2303 BetA Choline dehydroge  97.5 0.00014 3.5E-09   52.1   4.6   57  109-165   210-273 (542)
177 PRK12810 gltD glutamate syntha  97.5 0.00026 6.6E-09   50.1   6.0   45  354-399   427-472 (472)
178 PRK06116 glutathione reductase  97.5 0.00072 1.8E-08   47.0   8.1   75  351-426   287-370 (450)
179 PRK05976 dihydrolipoamide dehy  97.5 0.00072 1.8E-08   47.0   8.1   88  328-426   280-374 (464)
180 PRK12831 putative oxidoreducta  97.5 0.00027 6.8E-09   50.1   5.8   75  304-396   388-463 (464)
181 PRK06753 hypothetical protein;  97.5 3.3E-05 8.3E-10   56.6   1.2  139    8-157     3-151 (373)
182 PRK09564 coenzyme A disulfide   97.5  0.0007 1.8E-08   47.1   8.0   96    7-159   151-247 (443)
183 PRK08244 hypothetical protein;  97.5 0.00018 4.7E-09   51.2   4.7   36    5-40      2-37  (494)
184 COG0446 HcaD Uncharacterized N  97.5 0.00089 2.3E-08   46.3   8.1   95    7-156   138-235 (415)
185 PRK07845 flavoprotein disulfid  97.4 0.00099 2.5E-08   46.0   8.2   39  352-391   298-337 (467)
186 KOG2404 consensus               97.4 0.00076 1.9E-08   46.9   7.6  141    7-159    11-207 (477)
187 PRK05249 soluble pyridine nucl  97.4 0.00087 2.2E-08   46.4   7.9   39  351-390   295-334 (465)
188 PRK08294 phenol 2-monooxygenas  97.4 0.00018 4.7E-09   51.2   4.3   38    4-41     31-69  (634)
189 PRK13984 putative oxidoreducta  97.4 0.00047 1.2E-08   48.3   5.8   56    8-64    286-342 (604)
190 TIGR00031 UDP-GALP_mutase UDP-  97.4 0.00025 6.3E-09   50.3   4.3   34    5-38      1-35  (390)
191 TIGR02733 desat_CrtD C-3',4' d  97.4 0.00025 6.3E-09   50.3   4.2   32    7-38      3-34  (499)
192 PRK12814 putative NADPH-depend  97.3 0.00068 1.7E-08   47.2   6.1  120  303-448   428-549 (652)
193 PRK09754 phenylpropionate diox  97.3   0.001 2.6E-08   45.9   6.9  101    7-163   146-246 (400)
194 PRK07846 mycothione/glutathion  97.3  0.0018 4.7E-08   44.1   8.1   69  352-421   287-364 (453)
195 TIGR01316 gltA glutamate synth  97.3  0.0007 1.8E-08   47.1   5.7   58    6-66    143-203 (462)
196 PRK06912 acoL dihydrolipoamide  97.3  0.0021 5.5E-08   43.7   8.1   69  351-420   289-364 (458)
197 PRK07190 hypothetical protein;  97.3 0.00055 1.4E-08   47.8   5.1   41    1-41      1-41  (480)
198 TIGR02730 carot_isom carotene   97.3 0.00031 7.9E-09   49.6   3.8   33    6-38      1-33  (506)
199 TIGR03315 Se_ygfK putative sel  97.2  0.0011 2.8E-08   45.7   6.2   56    8-64    540-596 (1012)
200 TIGR03452 mycothione_red mycot  97.2  0.0022 5.6E-08   43.5   7.8   70  351-421   287-365 (452)
201 PRK09853 putative selenate red  97.2  0.0012 3.1E-08   45.4   6.2   56    8-64    553-609 (1032)
202 PRK12809 putative oxidoreducta  97.2  0.0013 3.3E-08   45.2   6.1   57    7-64    312-369 (639)
203 PRK12778 putative bifunctional  97.1  0.0013 3.4E-08   45.1   5.9   74  304-396   686-760 (760)
204 PRK12769 putative oxidoreducta  97.1  0.0013 3.3E-08   45.2   5.8   57    8-65    330-387 (654)
205 PRK06292 dihydrolipoamide dehy  97.1  0.0033 8.5E-08   42.3   7.6   70  351-421   290-367 (460)
206 TIGR01811 sdhA_Bsu succinate d  97.1 0.00057 1.4E-08   47.8   3.5  139    8-158     1-199 (620)
207 TIGR02374 nitri_red_nirB nitri  97.0  0.0034 8.7E-08   42.2   7.3  104    8-162   150-254 (813)
208 COG3573 Predicted oxidoreducta  97.0  0.0009 2.3E-08   46.3   4.3  187    3-214     3-268 (552)
209 COG4529 Uncharacterized protei  97.0  0.0053 1.4E-07   40.8   8.2  135    6-156     2-162 (474)
210 pfam00070 Pyr_redox Pyridine n  97.0 0.00097 2.5E-08   46.1   4.0   32    8-39      2-33  (82)
211 TIGR00292 TIGR00292 thiazole b  96.9 0.00095 2.4E-08   46.2   3.8  112    5-143    21-151 (283)
212 KOG0042 consensus               96.9 0.00037 9.3E-09   49.1   1.4   35    3-37     65-99  (680)
213 TIGR01372 soxA sarcosine oxida  96.9  0.0013 3.4E-08   45.1   4.0  152    2-195   173-332 (1026)
214 TIGR02734 crtI_fam phytoene de  96.9  0.0012 3.2E-08   45.3   3.8   53  104-156   230-291 (526)
215 PRK08243 4-hydroxybenzoate 3-m  96.8  0.0021 5.3E-08   43.7   4.8   33    6-38      3-35  (392)
216 TIGR02485 CobZ_N-term precorri  96.8  0.0013 3.2E-08   45.3   3.6  369    6-395     2-467 (467)
217 COG1232 HemY Protoporphyrinoge  96.8  0.0031 7.8E-08   42.5   5.5   44    8-52      3-48  (444)
218 COG1231 Monoamine oxidase [Ami  96.8  0.0019 4.8E-08   44.0   4.4   35    4-38      6-40  (450)
219 COG1249 Lpd Pyruvate/2-oxoglut  96.8   0.015 3.8E-07   37.6   8.9   30    8-37    176-205 (454)
220 KOG4716 consensus               96.8   0.023 5.8E-07   36.4   9.6  326    3-402    17-371 (503)
221 COG3349 Uncharacterized conser  96.7  0.0021 5.2E-08   43.8   4.2   31    8-38      3-33  (485)
222 TIGR02028 ChlP geranylgeranyl   96.7  0.0014 3.4E-08   45.1   3.3   34    8-41      3-36  (401)
223 KOG1399 consensus               96.6  0.0097 2.5E-07   39.0   7.1  137    1-158     4-153 (448)
224 COG0562 Glf UDP-galactopyranos  96.6   0.003 7.6E-08   42.6   4.4   34    5-38      1-34  (374)
225 COG1251 NirB NAD(P)H-nitrite r  96.6  0.0088 2.2E-07   39.3   6.7   31    8-38    148-178 (793)
226 PTZ00318 NADH dehydrogenase; P  96.5  0.0087 2.2E-07   39.3   6.3  115    1-159     8-132 (514)
227 TIGR01421 gluta_reduc_1 glutat  96.5  0.0032 8.1E-08   42.4   4.0  135    4-157     1-153 (475)
228 KOG2852 consensus               96.5  0.0059 1.5E-07   40.5   5.0  157    6-163    11-213 (380)
229 PRK12779 putative bifunctional  96.4  0.0093 2.4E-07   39.1   5.8   58    7-65    308-366 (944)
230 TIGR03140 AhpF alkyl hydropero  96.4   0.022 5.5E-07   36.5   7.6   38  358-395   475-514 (515)
231 PRK12416 protoporphyrinogen ox  96.4  0.0059 1.5E-07   40.5   4.6   30    8-37      4-39  (466)
232 PRK12775 putative trifunctiona  96.4   0.011 2.8E-07   38.7   5.9  307    7-401   434-761 (993)
233 PRK07530 3-hydroxybutyryl-CoA   96.3    0.01 2.5E-07   38.9   5.3   39    1-41      1-40  (292)
234 PRK09260 3-hydroxybutyryl-CoA   96.2    0.01 2.6E-07   38.9   5.1   39    1-42      1-39  (289)
235 PRK07251 pyridine nucleotide-d  96.2  0.0074 1.9E-07   39.8   4.2   39  351-390   275-314 (438)
236 KOG4254 consensus               96.1   0.007 1.8E-07   40.0   3.8   56  104-159   267-322 (561)
237 PRK06370 mercuric reductase; V  96.1   0.008   2E-07   39.6   4.1   69  351-420   292-368 (459)
238 TIGR02061 aprA adenylylsulfate  96.1  0.0051 1.3E-07   41.0   2.9  366    7-402     1-488 (651)
239 PTZ00052 thioredoxin reductase  96.0   0.053 1.4E-06   33.7   8.0   38  353-390   342-381 (541)
240 KOG2844 consensus               96.0   0.008   2E-07   39.6   3.8  165    5-171    39-256 (856)
241 PRK08293 3-hydroxybutyryl-CoA   96.0   0.016 4.1E-07   37.4   5.2   39    1-41      1-39  (288)
242 TIGR03143 AhpF_homolog putativ  96.0   0.011 2.7E-07   38.7   4.2   42  353-395   267-310 (555)
243 KOG0405 consensus               96.0   0.035   9E-07   35.0   6.9  138    3-156    18-163 (478)
244 PRK07660 consensus              95.9   0.017 4.3E-07   37.3   5.2   40    1-42      1-40  (283)
245 PRK06416 dihydrolipoamide dehy  95.9   0.013 3.2E-07   38.2   4.4   39  351-390   293-332 (462)
246 PRK08010 pyridine nucleotide-d  95.9   0.011 2.9E-07   38.5   4.2   38  352-390   277-315 (441)
247 PRK05808 3-hydroxybutyryl-CoA   95.9   0.019 4.9E-07   36.9   5.2   39    1-41      1-39  (282)
248 pfam01262 AlaDh_PNT_C Alanine   95.9   0.012 3.1E-07   38.3   4.1   39    6-44     21-59  (150)
249 COG0492 TrxB Thioredoxin reduc  95.9   0.039   1E-06   34.7   6.7   42  356-397   261-304 (305)
250 PRK06467 dihydrolipoamide dehy  95.8   0.012 3.1E-07   38.3   4.1   69  351-420   296-371 (472)
251 TIGR01317 GOGAT_sm_gam glutama  95.8   0.027 6.8E-07   35.9   5.8   59    7-67    153-214 (517)
252 TIGR01350 lipoamide_DH dihydro  95.8   0.079   2E-06   32.5   8.2   96    8-158   181-283 (481)
253 COG0686 Ald Alanine dehydrogen  95.8    0.01 2.6E-07   38.8   3.5   40    6-45    169-208 (371)
254 PRK07818 dihydrolipoamide dehy  95.8   0.015 3.8E-07   37.7   4.3   69  351-420   296-373 (467)
255 pfam00996 GDI GDP dissociation  95.7   0.016   4E-07   37.5   4.3   37    2-38      1-37  (439)
256 KOG1238 consensus               95.7   0.014 3.5E-07   37.9   3.9   33    3-35     55-88  (623)
257 PRK06035 3-hydroxyacyl-CoA deh  95.7   0.026 6.5E-07   36.0   5.3   40    1-42      1-40  (291)
258 PRK06115 dihydrolipoamide dehy  95.7   0.016 4.2E-07   37.4   4.2   36  352-388   298-334 (466)
259 TIGR01789 lycopene_cycl lycope  95.6   0.012   3E-07   38.4   3.4  147    7-182     1-169 (392)
260 PRK05294 carB carbamoyl phosph  95.6    0.04   1E-06   34.6   6.0  102    8-120    10-149 (1063)
261 TIGR01438 TGR thioredoxin and   95.6   0.016   4E-07   37.5   3.9  333    4-401     1-364 (513)
262 PRK06327 dihydrolipoamide dehy  95.5   0.022 5.7E-07   36.4   4.3   72  351-426   306-385 (475)
263 COG3380 Predicted NAD/FAD-depe  95.3   0.025 6.3E-07   36.1   4.2   33    7-39      3-35  (331)
264 PRK13512 coenzyme A disulfide   95.3   0.029 7.3E-07   35.6   4.5   92    7-159   150-242 (438)
265 KOG0404 consensus               95.3   0.049 1.3E-06   34.0   5.6  115    5-159     8-125 (322)
266 TIGR01292 TRX_reduct thioredox  95.2    0.11 2.7E-06   31.6   7.1   88    7-155   153-249 (321)
267 TIGR01989 COQ6 Ubiquinone bios  95.2    0.03 7.7E-07   35.5   4.3   35    6-40      1-41  (481)
268 pfam07992 Pyr_redox_2 Pyridine  95.1   0.037 9.4E-07   34.9   4.4   19  352-371   256-274 (277)
269 PTZ00318 NADH dehydrogenase; P  95.1   0.064 1.6E-06   33.2   5.6   51  104-160   236-286 (514)
270 COG3486 IucD Lysine/ornithine   95.0    0.17 4.5E-06   30.1   7.6  132    1-156     1-155 (436)
271 TIGR03169 Nterm_to_SelD pyridi  94.9    0.22 5.7E-06   29.3   8.0   49  351-400   262-317 (364)
272 PRK09117 consensus              94.9    0.05 1.3E-06   33.9   4.7   35    8-42      5-39  (282)
273 pfam00743 FMO-like Flavin-bind  94.8   0.051 1.3E-06   33.9   4.5  135    4-163     2-155 (532)
274 PRK06130 3-hydroxybutyryl-CoA   94.8   0.076 1.9E-06   32.6   5.3   41    1-41      1-41  (310)
275 PRK12815 carB carbamoyl phosph  94.7    0.16   4E-06   30.4   6.9  104    8-122    10-151 (1068)
276 COG0493 GltD NADPH-dependent g  94.7   0.024 6.2E-07   36.2   2.7   38    6-43    124-161 (457)
277 COG1252 Ndh NADH dehydrogenase  94.6    0.13 3.2E-06   31.1   6.1  108    6-174   156-280 (405)
278 PRK13748 putative mercuric red  94.5   0.062 1.6E-06   33.2   4.4   41  350-391   386-427 (561)
279 COG3634 AhpF Alkyl hydroperoxi  94.5   0.033 8.5E-07   35.2   3.0   10  360-369   479-488 (520)
280 pfam02737 3HCDH_N 3-hydroxyacy  94.4   0.077   2E-06   32.6   4.7   35    8-42      2-36  (180)
281 TIGR02279 PaaC-3OHAcCoADH 3-hy  94.4   0.046 1.2E-06   34.2   3.6   43    1-43      1-43  (508)
282 TIGR02732 zeta_caro_desat caro  94.4   0.054 1.4E-06   33.7   3.9   31    8-38      2-32  (474)
283 PRK07819 3-hydroxybutyryl-CoA   94.4   0.081 2.1E-06   32.4   4.8   34    8-41      5-38  (284)
284 KOG1276 consensus               94.4   0.056 1.4E-06   33.6   3.9   35    6-40     12-48  (491)
285 PRK06129 3-hydroxyacyl-CoA deh  94.4   0.089 2.3E-06   32.2   5.0   35    8-42      5-39  (308)
286 TIGR01369 CPSaseII_lrg carbamo  94.3    0.11 2.8E-06   31.5   5.3  110    8-129     9-157 (1089)
287 PRK07531 bifunctional 3-hydrox  94.3   0.086 2.2E-06   32.3   4.7   37    1-40      1-37  (489)
288 PRK12770 putative glutamate sy  94.1   0.088 2.2E-06   32.2   4.4   35    6-40     18-52  (350)
289 PRK09424 pntA NAD(P) transhydr  93.8   0.096 2.4E-06   31.9   4.1   34    7-40    167-200 (510)
290 PRK12831 putative oxidoreducta  93.8    0.11 2.7E-06   31.6   4.3   38    4-43    141-178 (464)
291 PRK04965 nitric oxide reductas  93.8    0.12 3.1E-06   31.1   4.7   97    8-160   144-241 (378)
292 COG2907 Predicted NAD/FAD-bind  93.7   0.086 2.2E-06   32.3   3.7   31    6-37      9-39  (447)
293 PRK11064 wecC UDP-N-acetyl-D-m  93.4    0.17 4.3E-06   30.2   4.8   43    1-45      1-43  (415)
294 PRK08268 3-hydroxybutyryl-CoA   93.3    0.18 4.6E-06   30.0   4.8   35    8-42      6-40  (503)
295 TIGR01424 gluta_reduc_2 glutat  93.2    0.14 3.5E-06   30.8   4.1   34    5-38      2-35  (478)
296 TIGR01318 gltD_gamma_fam gluta  93.1    0.11 2.7E-06   31.6   3.5   33    7-39    145-177 (480)
297 KOG4405 consensus               92.9    0.11 2.8E-06   31.5   3.3   42    4-45      7-51  (547)
298 PRK07066 3-hydroxybutyryl-CoA   92.9    0.23 5.9E-06   29.2   4.9   33    8-40     10-42  (321)
299 TIGR01373 soxB sarcosine oxida  92.8     0.1 2.6E-06   31.7   3.0   88  316-414   313-407 (407)
300 pfam03721 UDPG_MGDP_dh_N UDP-g  92.7    0.19 4.8E-06   29.8   4.3   39    8-46      3-41  (185)
301 KOG2960 consensus               92.6    0.22 5.5E-06   29.4   4.5  118    5-143    76-205 (328)
302 PRK12814 putative NADPH-depend  92.4     0.2 5.1E-06   29.6   4.1   57    8-65    196-253 (652)
303 KOG1439 consensus               92.3    0.11 2.7E-06   31.6   2.6   37    2-38      1-37  (440)
304 PRK08229 2-dehydropantoate 2-r  92.3    0.28 7.1E-06   28.6   4.7   37    1-41      1-37  (341)
305 PRK11730 fadB multifunctional   92.3    0.25 6.4E-06   29.0   4.4   89  385-481   326-421 (715)
306 PRK12778 putative bifunctional  92.1    0.32 8.1E-06   28.2   4.9   28    7-35    100-131 (760)
307 KOG2853 consensus               92.0    0.18 4.5E-06   30.0   3.5   49    4-53     85-137 (509)
308 PRK10262 thioredoxin reductase  92.0    0.18 4.7E-06   29.9   3.5   50  347-397   267-318 (321)
309 KOG0685 consensus               91.9     0.3 7.8E-06   28.4   4.5   32    4-35     20-52  (498)
310 COG1748 LYS9 Saccharopine dehy  91.6    0.35 8.9E-06   27.9   4.6   40    1-44      1-41  (389)
311 PRK12771 putative glutamate sy  91.6    0.35   9E-06   27.9   4.6   55    8-63    140-195 (560)
312 pfam06039 Mqo Malate:quinone o  91.4     0.4   1E-05   27.5   4.7   47    2-49      1-52  (489)
313 TIGR03026 NDP-sugDHase nucleot  91.3    0.37 9.4E-06   27.8   4.4   40    8-47      3-42  (411)
314 KOG3855 consensus               91.2    0.17 4.3E-06   30.2   2.6   57   99-155   150-214 (481)
315 pfam01210 NAD_Gly3P_dh_N NAD-d  91.1    0.37 9.4E-06   27.8   4.3   37    8-44      3-39  (159)
316 COG0458 CarB Carbamoylphosphat  91.1    0.68 1.7E-05   25.9   5.6   31   11-41     12-42  (400)
317 PRK11749 putative oxidoreducta  91.0    0.36 9.3E-06   27.8   4.2   36    8-43    143-178 (460)
318 PRK00094 gpsA NAD(P)H-dependen  90.9    0.42 1.1E-05   27.4   4.4   45    1-49      1-48  (325)
319 PTZ00153 lipoamide dehydrogena  90.8     0.3 7.7E-06   28.4   3.6   39  352-390   457-501 (673)
320 PRK08277 D-mannonate oxidoredu  90.8     1.2   3E-05   24.2   6.6   85    1-120     1-91  (278)
321 PRK05335 tRNA (uracil-5-)-meth  90.5    0.13 3.4E-06   30.9   1.5   58  235-302   188-253 (434)
322 TIGR01176 fum_red_Fp fumarate   90.5     0.4   1E-05   27.5   4.0  421    5-486     3-498 (585)
323 TIGR00518 alaDH alanine dehydr  90.4    0.21 5.4E-06   29.5   2.6   44    4-47    167-213 (372)
324 PRK00141 murD UDP-N-acetylmura  90.2    0.45 1.2E-05   27.1   4.1   36    2-39     16-51  (476)
325 pfam00743 FMO-like Flavin-bind  90.2    0.31   8E-06   28.3   3.3   29    8-36    186-214 (532)
326 KOG1336 consensus               90.2     1.5 3.8E-05   23.4   8.0   30    7-36     76-105 (478)
327 KOG2415 consensus               90.0    0.38 9.7E-06   27.7   3.5   33    4-36     75-113 (621)
328 KOG0399 consensus               89.8    0.48 1.2E-05   26.9   3.9   37  241-277   542-578 (2142)
329 PRK11154 fadJ multifunctional   89.8     0.5 1.3E-05   26.9   4.0   79  394-480   339-417 (706)
330 PRK09496 trkA potassium transp  89.7    0.62 1.6E-05   26.2   4.4   38    8-45      3-40  (455)
331 PRK00066 ldh L-lactate dehydro  89.3    0.67 1.7E-05   25.9   4.4   38    1-38      1-41  (315)
332 PRK00683 murD UDP-N-acetylmura  89.2    0.66 1.7E-05   26.0   4.3   41    1-43      1-41  (418)
333 COG1250 FadB 3-hydroxyacyl-CoA  89.2    0.79   2E-05   25.4   4.7   39    1-41      1-39  (307)
334 cd01487 E1_ThiF_like E1_ThiF_l  89.1    0.63 1.6E-05   26.1   4.1   27    8-34      2-28  (174)
335 KOG2304 consensus               89.0    0.51 1.3E-05   26.8   3.6   41    3-43      9-49  (298)
336 TIGR02053 MerA mercuric reduct  89.0    0.37 9.5E-06   27.7   2.9   95    8-157   184-283 (494)
337 COG2072 TrkA Predicted flavopr  89.0     0.6 1.5E-05   26.3   3.9   33    8-40    178-210 (443)
338 PRK05708 2-dehydropantoate 2-r  88.8    0.83 2.1E-05   25.3   4.5   39    1-42      1-39  (305)
339 PRK12769 putative oxidoreducta  88.4    0.73 1.9E-05   25.7   4.0   38  355-393   613-651 (654)
340 pfam00899 ThiF ThiF family. Th  88.2    0.81 2.1E-05   25.3   4.2   29    8-36      4-33  (134)
341 KOG2665 consensus               87.7    0.55 1.4E-05   26.5   3.1  114    3-123    46-170 (453)
342 PRK13339 malate:quinone oxidor  87.6     1.2 3.1E-05   24.1   4.8   46    3-49      4-54  (497)
343 PRK05690 molybdopterin biosynt  87.5    0.98 2.5E-05   24.7   4.3   35    6-41     33-67  (245)
344 PRK12834 putative FAD-binding   87.5    0.51 1.3E-05   26.7   2.8   10  360-369   503-512 (549)
345 PRK08644 thiamine biosynthesis  87.4    0.99 2.5E-05   24.7   4.2   31    6-36     28-59  (209)
346 pfam07350 DUF1479 Protein of u  87.3     1.5 3.9E-05   23.4   5.2   55  102-163    90-145 (408)
347 pfam02254 TrkA_N TrkA-N domain  87.3    0.93 2.4E-05   24.9   4.0   37    8-45      1-37  (115)
348 PRK06718 precorrin-2 dehydroge  86.9     1.2   3E-05   24.2   4.4   34    3-38     10-43  (202)
349 PTZ00325 malate dehydrogenase;  86.9       1 2.5E-05   24.7   4.0   30    8-37      4-34  (313)
350 PTZ00188 adrenodoxin reductase  86.9     1.1 2.7E-05   24.5   4.1   35    4-38     38-73  (506)
351 PRK02006 murD UDP-N-acetylmura  86.8     1.1 2.9E-05   24.3   4.2   31    8-38     10-40  (501)
352 PRK01438 murD UDP-N-acetylmura  86.8       1 2.6E-05   24.6   4.0   35    3-39     14-48  (481)
353 KOG2755 consensus               86.7    0.64 1.6E-05   26.1   2.9   31    8-38      2-34  (334)
354 PRK06249 2-dehydropantoate 2-r  86.7     1.5 3.9E-05   23.4   4.9   36    1-36      1-36  (313)
355 PRK12475 thiamine/molybdopteri  86.5     1.2   3E-05   24.1   4.2   28    7-34     26-53  (337)
356 cd00757 ThiF_MoeB_HesA_family   86.4     1.3 3.3E-05   23.9   4.4   29    6-34     22-50  (228)
357 PRK01390 murD UDP-N-acetylmura  86.2     1.1 2.8E-05   24.4   3.9   38    4-43     10-47  (457)
358 PRK12748 3-ketoacyl-(acyl-carr  86.2     2.6 6.7E-05   21.7   7.5   94    1-120     3-99  (257)
359 COG0240 GpsA Glycerol-3-phosph  86.1     1.4 3.5E-05   23.7   4.3   45    8-52      4-52  (329)
360 PRK08328 hypothetical protein;  86.1     1.4 3.6E-05   23.6   4.4   30    6-35     28-58  (230)
361 PRK09434 aminoimidazole ribosi  85.8     1.7 4.4E-05   23.0   4.8   32    1-35      1-49  (304)
362 TIGR00137 gid gid protein; Int  85.7     0.5 1.3E-05   26.8   2.0  100  166-276   155-254 (444)
363 PRK07688 thiamine/molybdopteri  85.5     1.4 3.6E-05   23.7   4.2   27    7-33     26-52  (339)
364 PRK08306 dipicolinate synthase  85.4     1.6 4.1E-05   23.2   4.5   32    6-37      3-34  (296)
365 COG0569 TrkA K+ transport syst  85.4     1.6 4.1E-05   23.3   4.4   36    8-43      3-38  (225)
366 PRK05562 precorrin-2 dehydroge  85.1     1.5 3.9E-05   23.4   4.2   47    4-50     23-70  (222)
367 PTZ00117 malate dehydrogenase;  85.0     1.7 4.3E-05   23.1   4.4   32    2-37      1-32  (313)
368 PRK06522 2-dehydropantoate 2-r  85.0     2.1 5.3E-05   22.4   4.8   32    8-39      3-34  (307)
369 PRK10669 putative cation:proto  84.8     1.9 4.8E-05   22.7   4.6   25   17-41     53-81  (558)
370 TIGR00479 rumA 23S rRNA (uraci  84.5    0.77   2E-05   25.5   2.5   39  284-322   208-248 (434)
371 cd01483 E1_enzyme_family Super  84.1     1.6 4.1E-05   23.2   4.0   33    8-41      2-34  (143)
372 cd00755 YgdL_like Family of ac  84.0     1.9 4.9E-05   22.7   4.3   32    6-37     12-44  (231)
373 cd01484 E1-2_like Ubiquitin ac  83.7     2.1 5.4E-05   22.3   4.4   33    8-41      2-34  (234)
374 cd01485 E1-1_like Ubiquitin ac  83.5     2.1 5.3E-05   22.4   4.3   29    6-34     20-48  (198)
375 PRK08223 hypothetical protein;  83.5       2 5.2E-05   22.5   4.2   30    6-35     28-57  (287)
376 TIGR01423 trypano_reduc trypan  83.4    0.39 9.9E-06   27.6   0.6   34    4-37      2-36  (486)
377 cd05293 LDH_1 A subgroup of L-  83.4     1.7 4.4E-05   23.0   3.9   32    8-39      6-39  (312)
378 PRK03806 murD UDP-N-acetylmura  83.3       2   5E-05   22.6   4.1   34    3-38      6-39  (438)
379 PRK03369 murD UDP-N-acetylmura  83.3     1.6 4.2E-05   23.2   3.7   34    8-41     15-48  (487)
380 PRK07878 molybdopterin biosynt  83.2       2 5.2E-05   22.5   4.2   30    6-35     43-72  (392)
381 pfam01488 Shikimate_DH Shikima  83.1     2.7 6.8E-05   21.7   4.8   36    3-40     12-48  (134)
382 TIGR02731 phytoene_desat phyto  82.9     1.6 4.2E-05   23.2   3.6   37    8-45      2-38  (454)
383 TIGR01810 betA choline dehydro  82.8    0.76 1.9E-05   25.6   1.8   99  106-221   204-309 (540)
384 PRK08255 salicylyl-CoA 5-hydro  82.7     1.9 4.8E-05   22.7   3.9   39    8-46      3-45  (770)
385 PRK06719 precorrin-2 dehydroge  82.5     2.4 6.2E-05   22.0   4.3   31    8-38     16-46  (157)
386 PRK07832 short chain dehydroge  82.5     3.1 7.9E-05   21.2   4.9   79    8-120     3-82  (272)
387 cd00650 LDH_MDH_like NAD-depen  82.5     1.9 4.8E-05   22.7   3.8   33    8-40      1-38  (263)
388 PRK08762 molybdopterin biosynt  82.0     2.3 5.9E-05   22.1   4.1   29    6-34    139-167 (379)
389 TIGR02356 adenyl_thiF thiazole  81.8     1.9 4.8E-05   22.7   3.6   28    8-35     24-51  (210)
390 KOG3851 consensus               81.7       1 2.7E-05   24.5   2.2  289    4-399    38-366 (446)
391 PRK07411 hypothetical protein;  81.7     2.5 6.3E-05   21.9   4.1   29    6-34     39-67  (390)
392 PRK02472 murD UDP-N-acetylmura  81.6     2.3 5.8E-05   22.1   3.9   34    3-38      9-42  (450)
393 PRK09288 purT phosphoribosylgl  81.5     2.4   6E-05   22.0   4.0   43    8-50     15-57  (395)
394 PTZ00082 L-lactate dehydrogena  81.4     2.4 6.1E-05   22.0   4.0   37    1-38      4-41  (322)
395 PRK05600 thiamine biosynthesis  81.4     2.6 6.6E-05   21.7   4.2   28    6-33     42-69  (370)
396 PRK12921 2-dehydropantoate 2-r  81.1     2.3 5.9E-05   22.1   3.8   33    8-41      3-35  (306)
397 cd01492 Aos1_SUMO Ubiquitin ac  80.8     2.9 7.4E-05   21.4   4.3   33    5-37     21-54  (197)
398 cd05290 LDH_3 A subgroup of L-  80.7     2.4 6.2E-05   21.9   3.8   31    8-38      2-34  (307)
399 PRK09310 aroDE bifunctional 3-  80.7     2.6 6.7E-05   21.7   4.0  106  300-420   213-328 (477)
400 LOAD_Hrd consensus              80.7       2   5E-05   22.6   3.4   35  574-608    28-62  (77)
401 cd01489 Uba2_SUMO Ubiquitin ac  80.6     3.2 8.2E-05   21.1   4.4   26    8-33      2-27  (312)
402 KOG2403 consensus               80.6     1.9 4.8E-05   22.8   3.2  152    5-159    55-255 (642)
403 PRK06179 short chain dehydroge  80.0     4.1  0.0001   20.4   4.8   42    1-44      1-44  (270)
404 PRK08340 glucose-1-dehydrogena  79.6     2.1 5.3E-05   22.5   3.2   34    8-41      3-37  (259)
405 COG5044 MRS6 RAB proteins gera  79.6     3.4 8.7E-05   20.9   4.3   48    4-61      5-52  (434)
406 PRK06223 malate dehydrogenase;  79.4     2.9 7.4E-05   21.4   3.9   31    8-38      3-35  (312)
407 cd01065 NAD_bind_Shikimate_DH   79.4       4  0.0001   20.4   4.6   37    5-41     19-56  (155)
408 COG0476 ThiF Dinucleotide-util  79.4     2.3 5.9E-05   22.1   3.4   27    7-33     32-58  (254)
409 pfam02558 ApbA Ketopantoate re  79.2     3.1 7.8E-05   21.2   3.9   31    8-38      1-31  (150)
410 PRK05855 short chain dehydroge  79.1     4.8 0.00012   19.8   5.7   56  362-421   310-365 (582)
411 PRK03562 glutathione-regulated  79.0     3.4 8.7E-05   20.9   4.1   25   17-41     51-79  (615)
412 cd05292 LDH_2 A subgroup of L-  78.8     3.1 7.9E-05   21.2   3.8   31    8-38      3-35  (308)
413 PRK05597 molybdopterin biosynt  78.5     3.7 9.4E-05   20.6   4.2   29    7-35     30-58  (355)
414 pfam00056 Ldh_1_N lactate/mala  78.4     3.2 8.1E-05   21.1   3.8   31    8-38      3-36  (142)
415 COG0026 PurK Phosphoribosylami  78.3     3.4 8.8E-05   20.9   4.0  110    8-122     4-122 (375)
416 PRK05472 redox-sensing transcr  77.7     3.7 9.3E-05   20.7   4.0   86    2-114    81-169 (211)
417 pfam00570 HRDC HRDC domain. Th  77.7     2.8 7.2E-05   21.5   3.4   33  575-607    26-58  (68)
418 PRK04308 murD UDP-N-acetylmura  77.3     3.8 9.7E-05   20.6   4.0   34    3-38      5-38  (445)
419 PRK01710 murD UDP-N-acetylmura  77.0     3.9   1E-04   20.5   4.0   34    3-38     14-47  (458)
420 cd01337 MDH_glyoxysomal_mitoch  76.4       4  0.0001   20.4   3.9   30    8-37      3-35  (310)
421 KOG2018 consensus               76.2     3.8 9.8E-05   20.5   3.7   33    8-41     77-109 (430)
422 KOG3923 consensus               76.2       4  0.0001   20.4   3.8   43    6-48      4-50  (342)
423 PRK08017 short chain dehydroge  76.0     5.1 0.00013   19.7   4.3   41    2-44      1-42  (256)
424 PRK08263 short chain dehydroge  75.6     5.3 0.00014   19.5   4.3   79    1-120     1-81  (275)
425 cd00300 LDH_like L-lactate deh  75.6     3.5 8.9E-05   20.8   3.4   31    8-38      1-33  (300)
426 PRK07024 short chain dehydroge  75.4       5 0.00013   19.7   4.2   42    2-45      1-43  (256)
427 PRK03659 glutathione-regulated  75.4     5.9 0.00015   19.2   4.5   24   18-41     53-80  (602)
428 PRK06949 short chain dehydroge  75.0     6.2 0.00016   19.1   6.6   78    8-120    12-90  (258)
429 cd01075 NAD_bind_Leu_Phe_Val_D  74.5     6.3 0.00016   19.0   4.6   34    7-40     30-63  (200)
430 COG0169 AroE Shikimate 5-dehyd  74.5     5.5 0.00014   19.4   4.2   23    8-30    129-151 (283)
431 KOG2764 consensus               74.5       2 5.2E-05   22.5   2.0   19    3-21     65-83  (247)
432 PRK12384 sorbitol-6-phosphate   74.3     6.2 0.00016   19.1   4.4   38    2-41      1-39  (259)
433 TIGR00562 proto_IX_ox protopor  73.9     4.7 0.00012   19.9   3.7   43    6-48      3-52  (556)
434 pfam01593 Amino_oxidase Flavin  73.6     3.5 8.8E-05   20.9   3.0   54  104-158   207-260 (444)
435 COG1648 CysG Siroheme synthase  73.1     6.8 0.00017   18.8   4.4   39    8-46     15-54  (210)
436 TIGR01763 MalateDH_bact malate  73.1     2.9 7.3E-05   21.4   2.4   29    8-36      4-34  (308)
437 COG0771 MurD UDP-N-acetylmuram  72.8     5.2 0.00013   19.6   3.7   70  325-394   271-343 (448)
438 PRK07201 short chain dehydroge  72.2     7.1 0.00018   18.6   6.0  234  180-420   166-425 (663)
439 smart00341 HRDC Helicase and R  71.9     4.7 0.00012   19.9   3.3   34  575-608    29-62  (81)
440 cd05294 LDH-like_MDH_nadp A la  71.7     6.2 0.00016   19.1   3.9   28    8-35      3-31  (309)
441 KOG1800 consensus               71.6     6.5 0.00017   18.9   4.0   32    7-38     22-55  (468)
442 PRK01368 murD UDP-N-acetylmura  71.5     5.3 0.00013   19.6   3.5   69  326-394   271-342 (450)
443 pfam03446 NAD_binding_2 NAD bi  71.5     5.5 0.00014   19.4   3.6   38    1-42      1-38  (163)
444 PRK00258 aroE shikimate 5-dehy  71.4     7.5 0.00019   18.5   4.7   23   20-42     26-48  (275)
445 cd01339 LDH-like_MDH L-lactate  71.1     5.7 0.00014   19.3   3.6   27    8-35      1-27  (300)
446 PRK07109 short chain dehydroge  71.1     7.6 0.00019   18.4   6.2   36    8-43     10-47  (338)
447 PRK13394 3-hydroxybutyrate deh  70.9     7.4 0.00019   18.5   4.1   34    8-41     10-44  (262)
448 cd05291 HicDH_like L-2-hydroxy  70.7     7.1 0.00018   18.7   4.0   32    8-39      3-36  (306)
449 PRK03803 murD UDP-N-acetylmura  70.6       6 0.00015   19.1   3.6   32    7-38      9-40  (448)
450 PRK12823 benD 1,6-dihydroxycyc  70.6     7.7  0.0002   18.4   4.7   37    1-37      1-41  (260)
451 PRK06720 hypothetical protein;  70.5     7.8  0.0002   18.4   6.5   78    8-120    18-97  (169)
452 PRK07502 cyclohexadienyl dehyd  70.5     7.5 0.00019   18.5   4.1   40    1-43      5-46  (307)
453 PTZ00142 6-phosphogluconate de  70.3     6.2 0.00016   19.1   3.6   45    1-45      1-45  (474)
454 pfam03435 Saccharop_dh Sacchar  70.1     6.7 0.00017   18.8   3.8   38    8-45      1-40  (384)
455 PRK07776 consensus              70.0     7.9  0.0002   18.3   6.6   42    1-42      1-46  (252)
456 PRK07831 short chain dehydroge  69.9       8  0.0002   18.3   4.2   38    8-45     19-58  (261)
457 PRK06019 phosphoribosylaminoim  69.7     7.4 0.00019   18.5   3.9   45    8-52     10-54  (377)
458 KOG2017 consensus               69.6       4  0.0001   20.4   2.5   30    4-33     65-94  (427)
459 KOG1201 consensus               69.5     5.8 0.00015   19.3   3.3   34    8-41     41-75  (300)
460 PRK12550 shikimate 5-dehydroge  69.5     8.2 0.00021   18.2   4.6   21  310-330   220-240 (272)
461 PRK07417 arogenate dehydrogena  69.4     8.2 0.00021   18.2   4.4   35    8-42      4-38  (280)
462 cd01491 Ube1_repeat1 Ubiquitin  68.6     7.4 0.00019   18.5   3.8   42    6-47     20-62  (286)
463 TIGR03197 MnmC_Cterm tRNA U-34  67.9     8.7 0.00022   18.0   4.0   60   97-159   131-191 (381)
464 PRK12743 acetoin dehydrogenase  67.8     6.5 0.00017   18.9   3.3   37    2-40      1-38  (253)
465 PRK06139 short chain dehydroge  67.7     8.3 0.00021   18.2   3.8   77    8-120     8-87  (324)
466 TIGR03573 WbuX N-acetyl sugar   67.4     8.9 0.00023   17.9   4.3   35    4-38     58-94  (343)
467 COG2910 Putative NADH-flavin r  67.1     9.1 0.00023   17.9   4.6   37    8-44      3-40  (211)
468 cd01488 Uba3_RUB Ubiquitin act  66.9     9.1 0.00023   17.9   4.4   33    8-41      2-34  (291)
469 PRK05867 short chain dehydroge  66.7     9.1 0.00023   17.9   3.9   34    8-41     12-46  (253)
470 pfam00670 AdoHcyase_NAD S-aden  66.7     7.2 0.00018   18.6   3.4   31    8-38     26-56  (162)
471 PRK02705 murD UDP-N-acetylmura  66.5     8.9 0.00023   17.9   3.8   31    8-38      3-33  (459)
472 PRK07102 short chain dehydroge  66.1     9.5 0.00024   17.8   4.0   37    8-44      4-41  (243)
473 PRK06123 short chain dehydroge  65.9     9.5 0.00024   17.7   4.4   34    1-37      1-36  (249)
474 PRK06180 short chain dehydroge  65.6     9.6 0.00025   17.7   4.4   42    1-44      1-44  (277)
475 PRK07097 gluconate 5-dehydroge  65.6     9.6 0.00025   17.7   4.7   41    1-41      1-47  (265)
476 PRK10637 cysG siroheme synthas  65.6     9.6 0.00025   17.7   3.8   45    3-49     12-57  (457)
477 cd01490 Ube1_repeat2 Ubiquitin  65.3     8.4 0.00021   18.1   3.5   34    8-41      2-39  (435)
478 TIGR02964 xanthine_xdhC xanthi  64.9      10 0.00025   17.6   4.0   49    6-54    116-166 (270)
479 PRK07062 short chain dehydroge  64.4      10 0.00026   17.5   4.4   41    1-41      1-45  (265)
480 TIGR02354 thiF_fam2 thiamine b  63.9     7.6 0.00019   18.4   3.1   29    6-34     22-50  (200)
481 PRK12548 shikimate 5-dehydroge  63.9      10 0.00026   17.5   4.2   25   20-44     30-54  (289)
482 PRK09897 hypothetical protein;  63.5      11 0.00027   17.4   7.8  137    8-157     4-165 (535)
483 PRK05993 short chain dehydroge  63.5      11 0.00027   17.4   4.3   41    2-44      3-44  (277)
484 PRK05650 short chain dehydroge  63.4      11 0.00027   17.4   6.2   36    8-43      3-39  (270)
485 TIGR02360 pbenz_hydroxyl 4-hyd  63.2      11 0.00027   17.4   4.5   31    8-38      5-35  (393)
486 PRK08643 acetoin reductase; Va  63.1      11 0.00027   17.4   3.7   37    2-41      1-39  (256)
487 cd07659 BAR_PICK1 The Bin/Amph  62.8       7 0.00018   18.7   2.7   15  604-618   168-182 (215)
488 PRK06914 short chain dehydroge  62.4      11 0.00028   17.3   4.1   38    2-41      1-40  (280)
489 COG1179 Dinucleotide-utilizing  62.3     8.1 0.00021   18.2   2.9   36    6-43     31-67  (263)
490 KOG1346 consensus               61.8     6.6 0.00017   18.9   2.4   66  355-420   472-554 (659)
491 pfam00289 CPSase_L_chain Carba  61.5      11 0.00029   17.2   4.7   35    8-42      4-38  (109)
492 PRK06124 gluconate 5-dehydroge  60.6      12  0.0003   17.1   6.6   35    8-42     17-52  (259)
493 PRK02201 putative inner membra  60.6     9.9 0.00025   17.6   3.1   11  267-277    66-76  (392)
494 PRK04690 murD UDP-N-acetylmura  60.5      12  0.0003   17.1   4.2   32    3-36      8-39  (468)
495 PRK07478 short chain dehydroge  60.5      12  0.0003   17.1   5.5   41    1-41      1-43  (254)
496 cd05213 NAD_bind_Glutamyl_tRNA  60.2      12  0.0003   17.0   4.6   36    1-38    176-211 (311)
497 PRK13479 2-aminoethylphosphona  59.5      12 0.00031   16.9   5.9   81    3-120    53-135 (368)
498 COG1004 Ugd Predicted UDP-gluc  59.3      12 0.00032   16.9   4.4   44    2-49      1-44  (414)
499 PRK00045 hemA glutamyl-tRNA re  58.8      13 0.00032   16.9   4.7   35    1-37    180-214 (429)
500 TIGR02442 Cob-chelat-sub cobal  58.8     5.2 0.00013   19.6   1.5   35   31-65      4-48  (688)

No 1  
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=100.00  E-value=0  Score=1832.44  Aligned_cols=616  Identities=53%  Similarity=0.853  Sum_probs=605.9

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      ++.++|||||||||||||||||++||+|++|+|+||++++||+|||||||||+||||||||||||||+|+++||+++|||
T Consensus         2 ~~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~   81 (621)
T PRK05192          2 YYPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQF   81 (621)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             98887988998975799999999996799679996581311586045203672165766687753689999998876168


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             87307878555346787849999999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g  160 (626)
                      ||||+||||||||||||+||.+|+++|++.|++||||+|+|+||++|+.+++.+.||.|.+|..+.|++||+||||||+|
T Consensus        82 r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlttGTFL~G  161 (621)
T PRK05192         82 RMLNTSKGPAVRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLTTGTFLRG  161 (621)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCCC
T ss_conf             76158888300673988859999999999996499978998145799987999999996687099852699831564562


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r  161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC  240 (626)
Q Consensus       161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~  240 (626)
                      ++|+|...+++||+|+.++.+||+++.++||+++|||||||||++++||||++++.|++|+.+.||||++.....+|++|
T Consensus       162 ~ihiG~~~~~~GR~Ge~~s~~Ls~~l~~~gf~~gRlKTGTPpRl~~~SId~s~le~Q~gD~~p~pFSf~~~~~~~~q~~C  241 (621)
T PRK05192        162 KIHIGEKSYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGDEDPPPFSFMTAEIHPPQIPC  241 (621)
T ss_pred             EEEECCEECCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             68755501146677760345889999973997000147998510367668866731469999844524677778675632


Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf             00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r  241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH  320 (626)
Q Consensus       241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~  320 (626)
                      |.|+||++||+++++|++.||||+|.+.++|||||||||||++||++|++|||||||||++++++|+||||||||+++|+
T Consensus       242 ~iT~Tn~~th~iI~~nl~~Spmy~G~I~g~GPRYCPSIEdKVvRF~dk~~HqiFLEPEGl~t~~iY~NG~STSLP~evQ~  321 (621)
T PRK05192        242 YITYTNEKTHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDSHQIFLEPEGLDTNEVYPNGISTSLPEDVQL  321 (621)
T ss_pred             CCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCHHHHH
T ss_conf             02264488999998156347512786612699999988998601325566323670156778757526755678989999


Q ss_pred             HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r  321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC  400 (626)
Q Consensus       321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~  400 (626)
                      +++|||||||||+|+||||||||||+||++|++|||+|+++|||||||||||||||||||||||||||||++++|++||+
T Consensus       322 ~~lrsIpGLE~a~i~rpGYAIEYDyvdP~qL~~tLEtK~i~gLf~AGQINGTTGYEEAAaQGliAGINAa~~~~~~~p~i  401 (621)
T PRK05192        322 EMLRSIPGLENAEILRPGYAIEYDYFDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI  401 (621)
T ss_pred             HHHHCCCCCCEEEEEECCEEEEECEECHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             99852757551699751114664405723433353316559877777667750789988546798999999965999876


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r  401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS  480 (626)
Q Consensus       401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~  480 (626)
                      |+|+||||||||||||||||+||||||||||||||+||+||||+|||++|+++|||+++||+.|++|++.++++.+.|++
T Consensus       402 l~R~eaYIGVlIDDLvtkGv~EPYRMFTSRAEyRL~LR~DNAD~RLt~~g~~~Glv~~~r~~~~~~k~~~~~~~~~~L~~  481 (621)
T PRK05192        402 LKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKS  481 (621)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             46031124441566760799964103304777776513665888879999984998899999999999999999999962


Q ss_pred             CCCCCHHHHHHHC---CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3688326766201---0125886647889854899998999862366113999999998898677779899999999998
Q gi|254780808|r  481 LVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIK  557 (626)
Q Consensus       481 ~~~~p~~~~~~~~---~~~~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klk  557 (626)
                      ++++|+.+....+   ...++++.++++++|+||++++++|.+++|+   +++.+.+|+++++||+|||+||+++|++++
T Consensus       482 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lL~rp~v~~~~l~~~~~~---~~~~v~~~veie~kY~gYi~Rq~~~i~~~~  558 (621)
T PRK05192        482 TRVTPNEEAVNELLALGGAPLKRGVSLADLLRRPEITYEDLAELLPA---LDPEVAEQVEIEIKYEGYIERQQEEIEKLK  558 (621)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             83380167776776447777788713999838999899999865657---999999999998402999999999999997


Q ss_pred             HHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             51157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r  558 FEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK  619 (626)
Q Consensus       558 k~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k  619 (626)
                      ++|+++||+||||+.|+|||+|++|||+++||.||||||||||||||||++|++||||++++
T Consensus       559 ~~e~~~IP~~~dY~~i~gLS~E~~eKL~~~rP~TlgqAsRI~GvtPa~i~~Ll~~lk~~~~~  620 (621)
T PRK05192        559 RLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISGVTPADISILLVYLKKRGRK  620 (621)
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             34689893997956785356999999974699998899668998999999999999986569


No 2  
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA    [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00  E-value=0  Score=1769.31  Aligned_cols=617  Identities=54%  Similarity=0.856  Sum_probs=600.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
                      |.+.||||||||||||||||+++||||++|+|+|+++|++|+|||||||||+||||||||||||||+|++++|+++||||
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r   80 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR   80 (621)
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHCCCCHH
T ss_conf             99878569989984204777766436980799973777446503564457735532677524124557776665078653


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             730787855534678784999999999999708996898001011202588-1132220358633445433346643101
Q gi|254780808|r   82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus        82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~-~~~~v~~~~g~~~~~~~viiatGtfl~g  160 (626)
                      |||+||||||||+|||+||.+|++.|++.|+++|||+|+|++|++|..+++ .+.||.|..|..+.|++||+||||||+|
T Consensus        81 ~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G  160 (621)
T COG0445          81 MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRG  160 (621)
T ss_pred             HCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCEEECCEEEEEECCCCCC
T ss_conf             33677762104506544289999999999854999552476667871337976899992787851068799963344362


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             34443202332224751113310000101120054444544101100001344321147876687774356578000000
Q gi|254780808|r  161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC  240 (626)
Q Consensus       161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~  240 (626)
                      ++|+|...+++||.|+.+|..||..|.++||+++|||||||||++++||||++++.|++|+++..|||.. .....|++|
T Consensus       161 ~I~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs~le~q~gD~~~~~fs~~~-~~~~~Qi~C  239 (621)
T COG0445         161 KIHIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGDEPPPVFSFTT-EPHPPQIPC  239 (621)
T ss_pred             EEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCCCCCCE
T ss_conf             6886664566777787310577899996594774331689986589866746514376888987413577-777545512


Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHH
Q ss_conf             00123200147776402457541443235642225532123356764334520130157877645434776668988999
Q gi|254780808|r  241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQH  320 (626)
Q Consensus       241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~  320 (626)
                      |+||||+.||++|++|+|.||||+|.+.|+|||||||||||++||+||++|||||||||++++++|+||||||||+++|.
T Consensus       240 ~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~  319 (621)
T COG0445         240 YITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQE  319 (621)
T ss_pred             EEECCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHH
T ss_conf             45468747899999765427100350234488889977876414788765247866788887638647514669899999


Q ss_pred             HHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99987543400100110001211023545656776540334156621330433466666677899999874203345654
Q gi|254780808|r  321 QFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCIC  400 (626)
Q Consensus       321 rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~  400 (626)
                      +++|||||||||+|+|||||||||||+|++|++|||+|+++||||||||||||||||||||||+||||||+++++++||+
T Consensus       320 ~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGYEEAAaQGliAGiNAal~~~~~~p~i  399 (621)
T COG0445         320 QIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFI  399 (621)
T ss_pred             HHHHHCCCCCCCEEECCCEEEEECCCCHHHCCCCHHHCEECCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99871846123346213115663230745455413222644627755136873367787624888899999746899824


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65321079999998860787740244200012212115787136688878773788389999999999999999998763
Q gi|254780808|r  401 FSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS  480 (626)
Q Consensus       401 l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~~  480 (626)
                      |+|+||||||||||||||||+||||||||||||||+||+||||+|||++|+++|||+++||+.|++|+++++.++++|++
T Consensus       400 l~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~  479 (621)
T COG0445         400 LRRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKS  479 (621)
T ss_pred             CCCCCCEEEEEEHHHHCCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             36675114567401113799873431100888878761245666616778870788899999999999999999999873


Q ss_pred             CCCCCHHHHHHHCC-CC-CCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             36883267662010-12-58866478898548999989998623661139999999988986777798999999999985
Q gi|254780808|r  481 LVLTSKNLSSTSIS-FK-QDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESSYAAYTGRQMIEAKEIKF  558 (626)
Q Consensus       481 ~~~~p~~~~~~~~~-~~-~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~~~~~~~eqieie~KY~gYI~RQ~~ei~klkk  558 (626)
                      ++++|+.+...... .. +.....+++++|+||++++++|.+++|....++..+.+|+||++||+|||+||+.+|++++|
T Consensus       480 ~~v~p~~~~~~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~p~~~~~~~~v~eqveieiKY~gYI~rq~~~i~~~~~  559 (621)
T COG0445         480 TWVTPSEVAKELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPADLDAEVLEQVEIEIKYEGYIKRQQEQIEKLKR  559 (621)
T ss_pred             EECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHH
T ss_conf             02570788899998625776430029999638898899998747762336888986762000099999999999999977


Q ss_pred             HCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             1157876999822354656899987623273788875028899989999999999850465
Q gi|254780808|r  559 EEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVK  619 (626)
Q Consensus       559 ~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k  619 (626)
                      +|+++||.||||+.|+|||+|++|||+++||.||||||||||||||||++|++||+++..+
T Consensus       560 ~e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsGitpadI~~Ll~~l~~~~~~  620 (621)
T COG0445         560 LENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGVTPADISILLVYLKKGKNK  620 (621)
T ss_pred             HHCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             6445698766843246433999999851599847776405799999999999998530137


No 3  
>KOG2311 consensus
Probab=100.00  E-value=0  Score=1531.41  Aligned_cols=616  Identities=48%  Similarity=0.822  Sum_probs=595.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998076260124667002211224899999863039999998863148873
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL   83 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l   83 (626)
                      -.||||||||||||||||.++||+|.+|+|+|++.|+||||||||||||+|||||+||+|||||+|++++|.++|||+||
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L  106 (679)
T KOG2311          27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL  106 (679)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHH
T ss_conf             75557998787520488898874187347863255610134457655876653024431200256765411555568775


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCC-----EEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             07878555346787849999999999997089968980010112025881-----1322203586334454333466431
Q gi|254780808|r   84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~-----~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                      |+|||||||+||||+||.+|+++|++.|.++|||+|.+++|++|+..++.     +.||.+.+|+.+.+.+||+||||||
T Consensus       107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL  186 (679)
T KOG2311         107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL  186 (679)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEEEECCCEECCCEEEEEECCCE
T ss_conf             02579722370876519999999998752687600122001333631688873477789975572731434999613212


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCC---C
Q ss_conf             0134443202332224751113310000101120054444544101100001344321147876687774356578---0
Q gi|254780808|r  159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKIT---N  235 (626)
Q Consensus       159 ~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~---~  235 (626)
                      +|.+++|.+.+++||+||.++.+|++.+.++||++||+|||||||++++||||++++.|.+|+.+.||||.+...+   .
T Consensus       187 ~~~I~iGlk~~pAGRiGe~ps~~Lse~l~klGF~~gRLKTGTPpRlak~sInfS~le~q~gD~~p~pfSFln~~v~i~~e  266 (679)
T KOG2311         187 RGQINIGLKTHPAGRIGEQPSIGLSETLQKLGFELGRLKTGTPPRLAKESINFSKLERQIGDEPPIPFSFLNETVWIEPE  266 (679)
T ss_pred             EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCCCCCCCCHH
T ss_conf             23785043114474446774357889999727142442479984313345776876553389998740023774244721


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCC
Q ss_conf             00000001232001477764024575414432356422255321233567643345201301578776454347766689
Q gi|254780808|r  236 RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALP  315 (626)
Q Consensus       236 ~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~  315 (626)
                      .|++||.+||++.+|+++++|+|..+-+.+.+.  |||||||||+|++|||+| .|+|||||||++.++||++|||++||
T Consensus       267 ~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~~--gPRYCPSiEsKilRFp~k-~HqiwLEpEGlDs~~iYpqG~S~tlp  343 (679)
T KOG2311         267 DQLPCYLTHTTPRVHEIVRKNLHENPHVKETTI--GPRYCPSIESKILRFPDK-SHQIWLEPEGLDSDLIYPQGLSNTLP  343 (679)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHCCCCC-CCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             047620024768899999744213752245545--886687478777227541-13265357678887451465556797


Q ss_pred             HHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             88999999875434001001100012110235456567765403341566213304334666666778999998742033
Q gi|254780808|r  316 EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK  395 (626)
Q Consensus       316 ~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~  395 (626)
                      .+.|..++|+|||||||+++||||+|+|||++|+||++|||+|+++|||||||||||||||||||||++|||||++...+
T Consensus       344 ee~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQlk~sLeTkkV~GLF~AGQINGTTGYEEAAAQGIiAGiNA~~~a~~  423 (679)
T KOG2311         344 EELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLETKKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRASG  423 (679)
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCEECCCCHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             78888999855573224351356531222458687360565400143477412358540577876516753005555137


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             45654653210799999988607877402442000122121157871366888787-73788389999999999999999
Q gi|254780808|r  396 LDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGM-KLGCIGERRQKRFAKYIQEYNFL  474 (626)
Q Consensus       396 ~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~-~~GLv~~~r~~~~~~k~~~~~~~  474 (626)
                      ++|++++|+|+|||||||||||+||.||||||||||||||+||.||||.||||+|+ ..||+|+.||+.|++++..+++.
T Consensus       424 ~~~~~v~Rte~yIGvLIDDL~t~g~~EPYRMfTSRsEfRLslR~DNAD~RLT~lg~~~~~l~s~~rw~~fq~~k~~l~~~  503 (679)
T KOG2311         424 KPPVVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRSEFRLSLRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSRLDEG  503 (679)
T ss_pred             CCCEEEECCCCEEEEEEHHHHCCCCCCCHHHHCCHHHHEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99705642543367772233415876506653003341566247764421461005434864678999999889888889


Q ss_pred             HHHHHHCCCCCHHHHHHHCCCCCCCCCCC----HHHHHCCCCCCHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99876336883267662010125886647----889854899998999862366---11399999999889867777989
Q gi|254780808|r  475 RSLLKSLVLTSKNLSSTSISFKQDGKTRT----AYEFLSYPDFSIQNLFSICPD---ARKFSSLVIERLQIESSYAAYTG  547 (626)
Q Consensus       475 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~s----~~~lL~rp~v~~~~l~~~~~~---~~~~~~~~~eqieie~KY~gYI~  547 (626)
                      ++.+++.++++..|.+..- +...+..++    ++++|++.++++.+|.+..|+   ..+++..+.++++||.||++||.
T Consensus       504 ~~~lk~~k~s~~~w~~l~~-ia~~s~~~~k~~~a~d~l~~~~~d~~~L~~~~p~~~~~~~~~r~~~erl~Ie~kYe~~i~  582 (679)
T KOG2311         504 IKRLKEFKLSSQKWKKLIP-IASISTSRSKPVRALDLLKFKDLDLDKLIECHPDPLKNLTIPRELAERLKIEGKYESFIV  582 (679)
T ss_pred             HHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCHHHHHHHEEEEEEEHHHHH
T ss_conf             9998886211888876324-665344665415466510445466899998566432024212887766266312113899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998511578769998223546568999876232737888750288999899999999998504656433
Q gi|254780808|r  548 RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKNTVKLNEI  623 (626)
Q Consensus       548 RQ~~ei~klkk~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~~~k~~~~  623 (626)
                      ||+++++.+.++|++.||.|+||..+++||.|++|||+++||+||||||||+|||||||..||+|+|++..+.+-+
T Consensus       583 rq~q~~q~~~~de~~~lP~D~Dy~tm~~lS~E~rekL~~vrP~TIg~asRI~GvtpaaI~~Llr~v~~~~~~~s~~  658 (679)
T KOG2311         583 RQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRVRPQTIGAASRIQGVTPAAIIRLLRHVKTNQRRQSAM  658 (679)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf             9998998776776523885456101144479999886415821233455237988899999999860235556654


No 4  
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416   Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=100.00  E-value=0  Score=1125.92  Aligned_cols=611  Identities=50%  Similarity=0.814  Sum_probs=597.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             57889889426899999998589989999807626012466700221122489999986303999999886314887307
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV   85 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~   85 (626)
                      |||+||||||||||||++++++|.+|.|++++++++|.++|||++||++||++++|+|+|||+|++++|.+++|||+||.
T Consensus         1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~~~~~g~~~cnp~~gg~~~g~~~~e~d~lgg~~g~~~d~~~~~~~~ln~   80 (630)
T TIGR00136         1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLNLDTLGKCPCNPAIGGPGKGILVKEIDALGGLMGKAADKTGLQFRLLNS   80 (630)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             90688617620035677765417513455404122202556644465323410002334201466655344444443204


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCEEEHHHHCCCCCC-----CCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             87855534678784999999999999708---9968980010112025-----881132220358633445433346643
Q gi|254780808|r   86 KKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGEVAGFNTE-----KNIISSIVMQDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        86 skGpAv~alraqvDR~~fs~~vt~~l~~~---pni~i~~~eV~~l~~~-----~~~~~~v~~~~g~~~~~~~viiatGtf  157 (626)
                      +||||||++|||+|+..|...++..+++.   ||+++.++++.++...     ++.+.|+.+..|..+.+..+|++||||
T Consensus        81 ~~gp~~~~~~~~~d~~~y~~~~~~~~~~~~~~pn~~~~~~~~~~~~~~~~gcg~~~~~g~~~~~g~~~~~~~~~~~~g~~  160 (630)
T TIGR00136        81 SKGPAVRALRAQIDKLLYRKWAKNTLENQKAHPNLSLLQGEVEDLLLEDPGCGNDEVKGVVTKDGAEFRAKAVVLTTGTF  160 (630)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEECCC
T ss_conf             56641000245666899999999887531146533566767777764046888651246653046300023256740410


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf             101344432023322247511133100001011200544445441011000013443211478766877743565780--
Q gi|254780808|r  158 LRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN--  235 (626)
Q Consensus       158 l~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~--  235 (626)
                      +.+.+|+|......|+.++.++..++..+..+||+.+|+|||||||++.+++||+.++.+.+|..+.+|||.+..+..  
T Consensus       161 l~g~~~~g~~~~~~g~~~~~~~~~l~~~l~~~g~~~~~l~~g~p~~~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~~~~  240 (630)
T TIGR00136       161 LRGKIHIGDLSYEGGRAGEKPSVGLSETLRELGFKLGRLKTGTPPRIDKRSIDFSKLEVQPGDEPPPPFSFLNKNFLPPL  240 (630)
T ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHEECCCCCCCHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCC
T ss_conf             02223422321234544321101234557553630000026875101000033011201367654430000454234440


Q ss_pred             -CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCC
Q ss_conf             -0000000123200147776402457541443235642225532123356764334520130157877645434776668
Q gi|254780808|r  236 -RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTAL  314 (626)
Q Consensus       236 -~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL  314 (626)
                       .|++||.++|++.+|+++..|+|.+|+|.|.+.+.||||||+++||+.+|.+++.|++|++||+.+.+.+|++||+|+|
T Consensus       241 ~~~~~c~~~~~~~~~h~~~~~n~~~~~~~~g~~~~~gp~ycp~~ed~~~~f~~~~~h~~~~ep~g~~~~~~y~~g~~~~~  320 (630)
T TIGR00136       241 EKQLPCYLTHTNPKTHELIRDNLHRSPLYSGSIEGNGPRYCPSIEDKVVRFADKERHQIFLEPEGLNSDEVYLNGLSTSL  320 (630)
T ss_pred             HHHCEEEEEECCHHHHHHHHHHHHHCHHCCCEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCCCC
T ss_conf             01010235405446789987422100000450102576436422445431257655436754567653300103312237


Q ss_pred             CHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98899999987543400100110001211023545656776540334156621330433466666677899999874203
Q gi|254780808|r  315 PEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN  394 (626)
Q Consensus       315 ~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~  394 (626)
                      |.++|.++++++||++||+++||||+++|||++|++|+++|++|.+.|||||||||||+||+|||+||++|||||++.++
T Consensus       321 p~~~~~~~~~~~~g~~~~~~~~~gy~~eyd~~~~~~l~p~l~~~~~~gl~~~g~~ng~~gyee~~~~g~~~g~n~~~~~~  400 (630)
T TIGR00136       321 PEDVQLKLLRSLPGLENAEILRPGYAIEYDFFDPTQLKPTLETKLIKGLFLAGQINGTTGYEEAAAQGLLAGINAALKLQ  400 (630)
T ss_pred             CHHHHHHHHHHCCCHHHEEEECCCCEEEECCCCCHHCCCHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             75789999974132010001113320110143510012003334320001211125765401343201355545777641


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             34565465321079999998860787740244200012212115787136688878773788389999999999999999
Q gi|254780808|r  395 KLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFL  474 (626)
Q Consensus       395 ~~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~  474 (626)
                      +++++++.|+++|||||||||+|+|+.||||||||||||||.||+||+|.||+++|+++|++++++|..|.++...++..
T Consensus       401 ~~~~~~~~~~~~y~g~~~~dl~~~~~~~py~~~~~~~e~~l~l~~d~~~~~l~~~~~~~gl~~~~~~~~~~~~~~~~~~~  480 (630)
T TIGR00136       401 GKEPFILKRSEAYLGVLIDDLVTKGTKEPYRLFTSRAEYRLLLREDNADLRLTPIGRELGLIDDDRYARFLKKKANIEEE  480 (630)
T ss_pred             CCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             55432020354300223344441255521455430113311110253034554434341354568898876677888999


Q ss_pred             HHHHHHCCCCCHHHHHHHC---CCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCC--CC--HHHHHHHHHHHHHHHHHH
Q ss_conf             9987633688326766201---0125886647889854899998999862366113--99--999999889867777989
Q gi|254780808|r  475 RSLLKSLVLTSKNLSSTSI---SFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARK--FS--SLVIERLQIESSYAAYTG  547 (626)
Q Consensus       475 ~~~l~~~~~~p~~~~~~~~---~~~~~~~~~s~~~lL~rp~v~~~~l~~~~~~~~~--~~--~~~~eqieie~KY~gYI~  547 (626)
                      ..+++++++++.......+   ...+.....+++++++||+++++++.++.|....  ++  ..+.+++++++||+|||+
T Consensus       481 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~y~gy~~  560 (630)
T TIGR00136       481 KERLKSTRLGPSKEVLEELKKLLGSPLKDEVDGYDLLKRPEINLDKLTKLLPFLPPNLLDDPEEVLEQVEIEVKYEGYIE  560 (630)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHEEECHHHH
T ss_conf             98887530331577888887631001101101344330356655667554020000001311676654332000001344


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999851157876999822354656899987623273788875028899989999999999850
Q gi|254780808|r  548 RQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGMTPAALNLLLIYIKKN  616 (626)
Q Consensus       548 RQ~~ei~klkk~e~~~IP~~~dY~~i~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~Ll~~lkk~  616 (626)
                      ||+..++++.++++++||.+|||..++|||+|+++||++++|.+++||+||+||+|++|.+|+++++.+
T Consensus       561 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~e~~~~l~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~  629 (630)
T TIGR00136       561 KQEEEIKKLDRLENVKLPAGFDYRKIPGLSTEAREKLSKFRPLSLGQASRISGINPADISALLVYLKNQ  629 (630)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             567888887655432167655411202224789998751363012223221577557889998876327


No 5  
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=100.00  E-value=0  Score=1106.19  Aligned_cols=391  Identities=56%  Similarity=0.923  Sum_probs=389.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      ||||||||||||||||++||+|++|+|+|++.++||+|||||||||+||||||+|||||||+|+++||+++|||||||+|
T Consensus         1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~LN~s   80 (391)
T pfam01134         1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRMLNTS   80 (391)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             97999987899999999986899689997342431588656556875304399999872589999999975456530446


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             78555346787849999999999997089968980010112025881132220358633445433346643101344432
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGK  166 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g~  166 (626)
                      ||||||||||||||++|+++|++.|++||||+|+|+||++|+.+++.+.||.+.+|..+.+++||+|||||++|.+|+|.
T Consensus        81 kGpAv~a~R~q~Dr~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g~~i~a~~vIltTGTFl~G~i~iG~  160 (391)
T pfam01134        81 KGPAVRALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGTFLNGKIHIGL  160 (391)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCCCEEECCEEEEECCCCCCCCEEEEE
T ss_conf             78766685899879999999999997599939995464003026995999993799785144599931564454155344


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             02332224751113310000101120054444544101100001344321147876687774356578000000001232
Q gi|254780808|r  167 LKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN  246 (626)
Q Consensus       167 ~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~~~~~t~  246 (626)
                      ..+++||.++.++..|++++.++|++++|||||||||++++||||++++.|++|+.+.+|||++.+...+|++||.++|+
T Consensus       161 ~~~~~Gr~ge~~s~~Ls~~L~~lg~~~~rlktGTpPri~~~SId~~~l~~q~~d~~~~~fs~~~~~~~~~q~~c~~t~tn  240 (391)
T pfam01134       161 KCYPAGRLGELTSEGLSESLKELGFELGRFKTGTPPRIDKDSIDFSKLEEQPGDKPGPPFSYLNCPMNKEQYPCFLTYTN  240 (391)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             43235788866438999999982862103206878065359737200525338999999787899898203447998875


Q ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             00147776402457541443235642225532123356764334520130157877645434776668988999999875
Q gi|254780808|r  247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTI  326 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~I  326 (626)
                      +.||.++++|++.+|||.|.+.+.|||||||||||++||++|++|||||||||+++++||||||||||||++|+++||||
T Consensus       241 ~~th~ii~~~~~~s~~~~G~I~~~gpRycpSiedKv~rf~dk~~h~IfLepEg~~~~~~y~nG~stslp~~~Q~~~~r~I  320 (391)
T pfam01134       241 EATHEIIRDNLHRSPMFEGCIEGIGPRYCPSIEDKPVRFADKPYHQVFLEPEGLDTDEYYLVGFSTSLPEDVQKRVLRTI  320 (391)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCC
T ss_conf             88789887411330202565563379999987766635555666338973267768679850655479989999998638


Q ss_pred             HHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             43400100110001211023545656776540334156621330433466666677899999874203345
Q gi|254780808|r  327 PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       327 PGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~  397 (626)
                      ||||||+|+||||+|||||++|++|++|||+|.+||||||||||||||||||||||||||||||++++|++
T Consensus       321 pGLena~~~r~Gy~veyd~i~p~~l~~tLe~k~~~~Lf~AGQInGt~GYeEAaaqGliAGiNaa~~~~~~e  391 (391)
T pfam01134       321 PGLENAEIVRPGYAIEYDYIDPPQLLPTLETKKIPGLFFAGQINGTEGYEEAAAQGLLAGINAARKALGKE  391 (391)
T ss_pred             CCCCCCEEEECCEEEEECCCCCHHCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             16014457633411554618802203035405469878766224770799999999999999999971999


No 6  
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=100.00  E-value=0  Score=878.87  Aligned_cols=364  Identities=26%  Similarity=0.311  Sum_probs=317.2

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---------HHHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf             9876357889889426899999998589989999807---------6260124667002211----22489999986303
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---------TSTIGSMSCNPAIGGL----GKGHLVREIDALDG   67 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~---------~~~~ael~Cnps~gg~----akg~L~~Ei~aLgg   67 (626)
                      ||+++  ||||||||||||||||+||+|++|+|+||+         .|+||||||||||||+    ||||||+|||||||
T Consensus         1 ~m~~~--ViVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgg   78 (434)
T PRK05335          1 MMMKP--VNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS   78 (434)
T ss_pred             CCCCC--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             99885--6998986899999999996899679999335667776246663687356456888644420589999998469


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r   68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC  147 (626)
Q Consensus        68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~  147 (626)
                      +|+++||+++|          |||+|| | |||++|+++||+.|++||||+|+|+||++|+.++                
T Consensus        79 lm~~~aD~~~v----------PAg~al-a-VDR~~y~~~m~~~l~~~pni~i~~~eV~~i~~~~----------------  130 (434)
T PRK05335         79 LIIEAADAHRV----------PAGGAL-A-VDREGFSAYVTEALKNHPLITVIREEVTEIPEDG----------------  130 (434)
T ss_pred             HHHHHHHHHCC----------CCCCHH-H-HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----------------
T ss_conf             89999898667----------872178-9-9899999999999974999499984402557889----------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf             543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r  148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF  226 (626)
Q Consensus       148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~  226 (626)
                       .||+||||++++                    .|++++.++ |.+..+|+|++|||++++||||++++.|...+.... 
T Consensus       131 -~vIiaTGplts~--------------------~L~~~l~~~~G~~~l~f~da~~P~v~~~SID~~~~~~~sr~~kg~~-  188 (434)
T PRK05335        131 -ITIIATGPLTSD--------------------ALAEAIKALTGEDYLYFFDAAAPIVEKDSIDMDKAYLASRYDKGEA-  188 (434)
T ss_pred             -CEEEECCCCCHH--------------------HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCC-
T ss_conf             -889961756769--------------------9999999861964211246778532346546023100356688975-


Q ss_pred             CCCCCCCCCCCCCCCCCCC-------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEE
Q ss_conf             7435657800000000123-------20014777640245754144323564222553212335--67643345201301
Q gi|254780808|r  227 SFMTDKITNRQIECGITRT-------NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--RFGERNGHQIFLEP  297 (626)
Q Consensus       227 s~~~~~~~~~q~~~~~~~t-------~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~~~~~p~h~VqLrp  297 (626)
                      +|.+++...+++.+|....       ...++....++.|.|.+....+.....||||+.|.++.  |++++|||||||||
T Consensus       189 dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feGC~pIE~~a~rg~~~lrfgp~kPvGL~dp~~~~~p~avVqLr~  268 (434)
T PRK05335        189 DYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEGCLPIEVMAERGRETLRFGPMKPVGLEDPRTGKRPYAVVQLRQ  268 (434)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             52238998799889998752002035665445766578877887741476532026765667778998986644898256


Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCHHH
Q ss_conf             57877645434776668988999999875434001001100012110235-45656776540334156621330433466
Q gi|254780808|r  298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTGYE  376 (626)
Q Consensus       298 E~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteGYe  376 (626)
                      ||+++++||+|||||||||++|++|||||||||||||+||||+|||||+| |++|++|||+|.++|||||||||||||||
T Consensus       269 En~~~~~ynlvGfsTsLp~~~Q~~i~r~IPGLEnaei~RyG~~~~ndyi~sP~~L~~tLe~K~~~~Lf~AGQInGt~GYe  348 (434)
T PRK05335        269 DNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKSRPNLFFAGQITGVEGYV  348 (434)
T ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCCCCHHHCCCCEEECCCCCCEECCCCCCCHHHH
T ss_conf             67666645402443579859999998718673423354322333011047865548441634879827711336741889


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             66667789999987420334565465321079999998860
Q gi|254780808|r  377 EAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS  417 (626)
Q Consensus       377 EAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLit  417 (626)
                      ||||||||||||||++++|++|++|++..+ ||-|+.-+++
T Consensus       349 EAAAqGliAGiNAa~~~~Gk~p~~~p~~t~-~GaL~~~i~~  388 (434)
T PRK05335        349 ESAASGLLAGINAARLALGKEPVVPPPTTA-LGALLNYITG  388 (434)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHCC
T ss_conf             999988999999999966999989880318-9999998448


No 7  
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=100.00  E-value=0  Score=833.31  Aligned_cols=395  Identities=24%  Similarity=0.315  Sum_probs=350.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH
Q ss_conf             78898894268999999985899899998076---------260124667002211----22489999986303999999
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----GKGHLVREIDALDGLMGRVA   73 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------~~~ael~Cnps~gg~----akg~L~~Ei~aLgg~m~~~a   73 (626)
                      .|+||||||||||||||+|+.|++|.|+||||         +++||||||||+||.    |.|+|+.||++|+|++..+|
T Consensus         2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~SliI~aA   81 (444)
T TIGR00137         2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLIIEAA   81 (444)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             36897188534689999984897279975387657787666660223202101101012012368999886307999876


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             88631488730787855534678784999999999999708996898001011202588113222035863344543334
Q gi|254780808|r   74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT  153 (626)
Q Consensus        74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viia  153 (626)
                      |.++|          |||+|| | |||..||+++|+.+++||||+|+++||++||.+.                 .+|||
T Consensus        82 d~~~V----------PAGGAL-a-VDR~iFs~s~Te~v~sHPnv~lireEV~EIPe~~-----------------~tvia  132 (444)
T TIGR00137        82 DEAAV----------PAGGAL-A-VDRKIFSESVTEKVKSHPNVTLIREEVTEIPEEE-----------------VTVIA  132 (444)
T ss_pred             HHCCC----------CCCCCC-H-HHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCC-----------------EEEEE
T ss_conf             53368----------988520-1-1278999988776412884588716400515997-----------------07986


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCC------CCCCCCC
Q ss_conf             664310134443202332224751113310000101-120054444544101100001344321147------8766877
Q gi|254780808|r  154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFA------DERLIPF  226 (626)
Q Consensus       154 tGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~------d~~~~~~  226 (626)
                      |||++|                    .+||+.+.++ |.++..|+|+..|+|.+||||+++......      |+-+|+|
T Consensus       133 TGPLTS--------------------~aLse~lkeltG~dyLyFyDAaaPIVe~dS~d~~k~f~~SRYdKGeaaYlNCp~  192 (444)
T TIGR00137       133 TGPLTS--------------------EALSEKLKELTGEDYLYFYDAAAPIVEKDSVDKEKAFLASRYDKGEAAYLNCPL  192 (444)
T ss_pred             CCCCCC--------------------HHHHHHHHHHHCCHHHHHHHHCCCEEHHCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf             388882--------------------788999987506302445530054000000452211010235776555326777


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC---------CCCCCCC
Q ss_conf             74356578000000001232001--4777640245754144323564222553212335--676---------4334520
Q gi|254780808|r  227 SFMTDKITNRQIECGITRTNLET--HRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--RFG---------ERNGHQI  293 (626)
Q Consensus       227 s~~~~~~~~~q~~~~~~~t~~~~--~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~~~---------~~p~h~V  293 (626)
                      .-..+..+++.+.-.+.-..+.+  +.-+.+++|++++..++++..+.+|+|++|.+++  |+|         ++|||||
T Consensus       193 teEey~~F~eaL~~AE~vplKdFdrEka~fFEGClPIEemA~RG~kTmlfGPmKPVGL~dprtGdfrdPankeK~PyAVV  272 (444)
T TIGR00137       193 TEEEYKKFYEALLEAEKVPLKDFDREKAVFFEGCLPIEEMAKRGKKTMLFGPMKPVGLVDPRTGDFRDPANKEKKPYAVV  272 (444)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             74567789999987347889877442213322887789996243223025888864665675577777323478850687


Q ss_pred             EEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf             130157877645434776668988999999875434001001100012110235-4565677654033415662133043
Q gi|254780808|r  294 FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGT  372 (626)
Q Consensus       294 qLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~Gt  372 (626)
                      |||+||++|++||||||||+|+|++|+||||.|||||||||||+|+||+|+|++ |.+|+++|++|+..+|||||||+||
T Consensus       273 QLRqedkaGtL~n~VGFQT~L~wgeQkrVfrLIPgLeNaefVR~GvMHRNTFInSp~lL~~~l~fk~r~~lFfAGQ~tGv  352 (444)
T TIGR00137       273 QLRQEDKAGTLYNLVGFQTKLKWGEQKRVFRLIPGLENAEFVRLGVMHRNTFINSPKLLTASLQFKDREDLFFAGQLTGV  352 (444)
T ss_pred             EECCCCCCCCEEEEEEEEECCEECCCCEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEECCC
T ss_conf             30221756762310022210101355514440578431478850743111112763565575304771331331400030


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             34666666778999998742033456546532107999999886078774024420001221211578713668887877
Q gi|254780808|r  373 TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK  452 (626)
Q Consensus       373 eGYeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~  452 (626)
                      |||+||+|+||+|||||||.+.|++++++| .|--||-|+.=.+|+--.+                       |=|.--.
T Consensus       353 EGYvas~A~G~lAGiNAarLalGe~ll~~P-~eTm~Gal~nyI~t~~~k~-----------------------fQPMnpn  408 (444)
T TIGR00137       353 EGYVASAASGLLAGINAARLALGEKLLKLP-AETMLGALVNYISTKSEKE-----------------------FQPMNPN  408 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHCCCCCC-----------------------CCCCCCC
T ss_conf             357766530147777788775066100154-1258887876520067887-----------------------6888866


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             37883899999999999999999
Q gi|254780808|r  453 LGCIGERRQKRFAKYIQEYNFLR  475 (626)
Q Consensus       453 ~GLv~~~r~~~~~~k~~~~~~~~  475 (626)
                      .||+.+= -.++++|+++.+...
T Consensus       409 FGlLpeL-p~kirnKkeR~e~ya  430 (444)
T TIGR00137       409 FGLLPEL-PKKIRNKKERKEQYA  430 (444)
T ss_pred             CCCCCCC-CHHHHHHHHHHHHHH
T ss_conf             7888741-133200433667889


No 8  
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=771.44  Aligned_cols=365  Identities=25%  Similarity=0.308  Sum_probs=327.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCCCCCCC----CHHHHHHHHHHHHH
Q ss_conf             98763578898894268999999985899899998076---------260124667002211----22489999986303
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------STIGSMSCNPAIGGL----GKGHLVREIDALDG   67 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------~~~ael~Cnps~gg~----akg~L~~Ei~aLgg   67 (626)
                      ||.+.  |+||||||||||||||+|++|++|.|+||||         |+|||||||||+||.    |.|+|+.|||.|||
T Consensus         1 ~~~~~--i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgS   78 (439)
T COG1206           1 MMQQP--INVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGS   78 (439)
T ss_pred             CCCCC--EEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98772--5897565445199999987698379997045668975445652430212554640344445788999997211


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             99999988631488730787855534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r   68 LMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC  147 (626)
Q Consensus        68 ~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~  147 (626)
                      ++..+||++.+          |||+|| | |||+.||++||+.|++||||+|+++||++||.++                
T Consensus        79 lii~~Ad~~~V----------PAGgAL-A-VDR~~Fs~~vT~~l~~hpli~vireEvt~iP~dg----------------  130 (439)
T COG1206          79 LIIEAADKHRV----------PAGGAL-A-VDRDGFSQAVTEKLENHPLIEVIREEVTEIPPDG----------------  130 (439)
T ss_pred             HHHHHHHHCCC----------CCCCEE-E-ECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----------------
T ss_conf             78664154068----------887604-6-6176778999999853997798711014689988----------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCC
Q ss_conf             543334664310134443202332224751113310000101-1200544445441011000013443211478766877
Q gi|254780808|r  148 STVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKF-DFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPF  226 (626)
Q Consensus       148 ~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~-~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~  226 (626)
                       .+||||||++++                    .|++.+.++ |.+...|+|+.+|+|+.+|||+++++.+...+... -
T Consensus       131 -~~vIATGPLTs~--------------------~La~~i~~ltG~d~l~FyDAaAPIi~~dSIdmd~~~~~sRYdKg~-a  188 (439)
T COG1206         131 -ITVIATGPLTSD--------------------ALAEKIKELTGEDYLYFYDAAAPIIEFDSIDMDKAYLKSRYDKGE-A  188 (439)
T ss_pred             -CEEEECCCCCCH--------------------HHHHHHHHHHCCCEEEEECCCCCEEECCCCCHHHHHHHHCCCCCC-C
T ss_conf             -579960898978--------------------899999986087527762124743320554347777650035564-1


Q ss_pred             CCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCCCCCEE
Q ss_conf             74356578000-------0000012320014777640245754144323564222553212335--6--76433452013
Q gi|254780808|r  227 SFMTDKITNRQ-------IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIV--R--FGERNGHQIFL  295 (626)
Q Consensus       227 s~~~~~~~~~q-------~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~--~--~~~~p~h~VqL  295 (626)
                      .|.+++...+|       +..........++....++.|++.+.+++++..++||+|+.|.++.  +  ++++|||||||
T Consensus       189 ~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~FegCmPIE~mA~rG~~Tl~~GPmKPvGL~~p~~~tgk~pYAVVQL  268 (439)
T COG1206         189 DYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEGCMPIEVMAERGRKTLRFGPMKPVGLEDPRDPTGKRPYAVVQL  268 (439)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             12069888999999999997434578344125612145676999986270001248888757778877778886179985


Q ss_pred             EECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCC-HHHHHHHHHHHCCCEEEEEEEEECCCH
Q ss_conf             0157877645434776668988999999875434001001100012110235-456567765403341566213304334
Q gi|254780808|r  296 EPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAGQINGTTG  374 (626)
Q Consensus       296 rpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~-P~~L~~tLe~k~~~~LffAGQI~GteG  374 (626)
                      ||||+.|++||||||||+|||++|+||||||||||||||+|||+||+|+|+| |++|+++|++|+.|+||||||||||||
T Consensus       269 Rqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EG  348 (439)
T COG1206         269 RQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEG  348 (439)
T ss_pred             ECCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHCCCEECCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHH
T ss_conf             20465664465430130352102554655367831114442033011353587666457750245888277325404215


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             66666677899999874203345654653210799999988607
Q gi|254780808|r  375 YEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSK  418 (626)
Q Consensus       375 YeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitk  418 (626)
                      |+||||+||+||+|||+..+|++|++++ .+.-||-|+.-+++.
T Consensus       349 YveSaA~Gllag~naa~~~~g~~~~~~P-~tT~~Gal~~yIt~~  391 (439)
T COG1206         349 YVESAASGLLAGINAARLALGEEPLIPP-PTTALGALVNYITGA  391 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCC
T ss_conf             4677653378766799986589877798-445788899997337


No 9  
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41  E-value=6.8e-12  Score=104.03  Aligned_cols=37  Identities=43%  Similarity=0.625  Sum_probs=34.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9876357889889426899999998589989999807
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      ||..+|||+|||+|.||+=||+.+++.|++|.|++..
T Consensus         8 ~~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~   44 (598)
T PRK09078          8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKV   44 (598)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             5566379899995699999999998749907999788


No 10 
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34  E-value=7.7e-12  Score=103.64  Aligned_cols=155  Identities=22%  Similarity=0.255  Sum_probs=79.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHH------------HHHHHHHHHHH---
Q ss_conf             763578898894268999999985899899998076260124667002211224------------89999986303---
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKG------------HLVREIDALDG---   67 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg------------~L~~Ei~aLgg---   67 (626)
                      ..+|||+|||+|.||.-||+++++.|++|.|++-.+  ++.=.++-|-||++..            |..-=|++=.+   
T Consensus         6 ~~e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~--~~~~~s~~A~GGi~a~~~~~~~~Ds~e~h~~Dtl~~G~~l~d   83 (631)
T PRK07803          6 RHEYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSL--FGKAHTVMAEGGCAAAMGNVNPKDNWQVHFGDTMRGGKFLNN   83 (631)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             310598999964999999999987699879997899--998653676576764406899998999999999986278888


Q ss_pred             --HHHHHHHHHHHHHHHHCC-----CC---C-----C-CC-CCHHH-H-HHH-------HHHHHHH-------HHHHHCC
Q ss_conf             --999999886314887307-----87---8-----5-55-34678-7-849-------9999999-------9999708
Q gi|254780808|r   68 --LMGRVADAAGIQFRVLNV-----KK---G-----P-AV-RGPRT-Q-ADR-------ELYRLAM-------QREILSQ  114 (626)
Q Consensus        68 --~m~~~aD~~~i~~r~ln~-----sk---G-----p-Av-~alra-q-vDR-------~~fs~~v-------t~~l~~~  114 (626)
                        ++-..++++.--.+.|..     .+   |     + .+ .-+|. . .|+       .+..+.+       .+....+
T Consensus        84 ~~~v~~l~~~a~~~v~~Le~~Gv~f~r~~dG~~~~~~~GGhs~~R~~~~~d~tG~~i~~~L~~~~~~~~~~~~~~~~~~~  163 (631)
T PRK07803         84 WRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDKAELGDYE  163 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999998599754489987721016886565001127875699999999999973013444432034


Q ss_pred             CCCEEEH-HHHCCCCCCCCCEEEEEEC---CC--CCCCCCCCCCCCCCCCH
Q ss_conf             9968980-0101120258811322203---58--63344543334664310
Q gi|254780808|r  115 ENLDVIQ-GEVAGFNTEKNIISSIVMQ---DN--SMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       115 pni~i~~-~eV~~l~~~~~~~~~v~~~---~g--~~~~~~~viiatGtfl~  159 (626)
                      .+|++.. -+|++|..+++.+.|+...   .|  ..+.|++||+|||-|-.
T Consensus       164 ~~i~v~~~~~v~~Ll~d~g~v~Ga~~~~~~~g~~~~~~AkaVVLATGG~g~  214 (631)
T PRK07803        164 ARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK  214 (631)
T ss_pred             CCEEEEECCEEEEEEEECCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
T ss_conf             673899332889999869999999999878982999962569986776763


No 11 
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.33  E-value=4e-11  Score=98.54  Aligned_cols=61  Identities=28%  Similarity=0.433  Sum_probs=42.9

Q ss_pred             EEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEEC--CCHH--------HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             1100012110235456567765403341566213304--3346--------66666778999998742033456
Q gi|254780808|r  335 IRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING--TTGY--------EEAAAQGLVAGINSARKSNKLDC  398 (626)
Q Consensus       335 ~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~G--teGY--------eEAAAqGl~AGiNa~~~~~~~~p  398 (626)
                      ++|+  .||. +---..+..-++..+||||.||-.+|  +-|.        .|+...|.+||-|||.++.+...
T Consensus       364 V~P~--aHYt-MGGI~vd~~g~t~~I~GLyAaGE~a~~GvHGANRLGgNSLlE~vVfGr~AG~~aA~~~~~~~~  434 (657)
T PRK08626        364 VRPT--QHYS-MGGIRTNPTGESPGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIIGKYVADFCEGNDL  434 (657)
T ss_pred             EECC--CCEE-CCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             4213--4722-668307888862673401240353425666544444304899999999999999999862666


No 12 
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32  E-value=7.7e-12  Score=103.63  Aligned_cols=153  Identities=24%  Similarity=0.290  Sum_probs=79.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCH----------H--HHHH-HHHHHHH--
Q ss_conf             76357889889426899999998589989999807626012466700221122----------4--8999-9986303--
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGK----------G--HLVR-EIDALDG--   67 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~ak----------g--~L~~-Ei~aLgg--   67 (626)
                      .-+|||+|||+|.||+-||+++++.|++|+|++-..-.  .=.++-+-||++.          +  .... -+.+=++  
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~--~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~   80 (566)
T PRK06452          3 KLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPT--RSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLV   80 (566)
T ss_pred             EEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             68707899997499999999998779978999788999--9753686682068635799999899999999998546888


Q ss_pred             ---HHHHHHHHHHHHHHHHCC-----CCCC----C-----CCC-HHH--HHHHHHH--HHHHHHHHHCCCCCEEEHH-HH
Q ss_conf             ---999999886314887307-----8785----5-----534-678--7849999--9999999970899689800-10
Q gi|254780808|r   68 ---LMGRVADAAGIQFRVLNV-----KKGP----A-----VRG-PRT--QADRELY--RLAMQREILSQENLDVIQG-EV  124 (626)
Q Consensus        68 ---~m~~~aD~~~i~~r~ln~-----skGp----A-----v~a-lra--qvDR~~f--s~~vt~~l~~~pni~i~~~-eV  124 (626)
                         ++-..++.+.--.+.|..     ++-|    +     +++ +|.  ..|+...  -..+.+.+. ..+|++... .|
T Consensus        81 d~~~v~~l~~~~~~~i~~L~~~Gv~f~r~~dG~~~~~~~gghs~~R~~~~~d~tG~~i~~~l~~~~~-~~~i~~~~~~~~  159 (566)
T PRK06452         81 DQDAAELLSYKSGEIVELLERWGALFNRQPDGRVALRYFGGQTYPRTRFVGDKTGMALLHTLYERTS-GLNVDFYNEWFA  159 (566)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEEEE
T ss_conf             9999999999899999999983998652899988443347755133574288766899999999986-299789987899


Q ss_pred             CCCCCCCCCEEEEEECC---CC--CCCCCCCCCCCCCCC
Q ss_conf             11202588113222035---86--334454333466431
Q gi|254780808|r  125 AGFNTEKNIISSIVMQD---NS--MIRCSTVVLTTGTFL  158 (626)
Q Consensus       125 ~~l~~~~~~~~~v~~~~---g~--~~~~~~viiatGtfl  158 (626)
                      ++|+.+++.+.|+...+   +.  .+.+++||+|||-+-
T Consensus       160 ~~Ll~~~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g  198 (566)
T PRK06452        160 WDLVRDEKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMG  198 (566)
T ss_pred             EEEEECCCEEEEEEEEECCCCEEEEEECCEEEEECCCCC
T ss_conf             998853986889999976899599998188999178513


No 13 
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.30  E-value=1.1e-10  Score=95.54  Aligned_cols=157  Identities=25%  Similarity=0.306  Sum_probs=83.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-----CCCCCCCCH---H----HHHHHHHHHHH-
Q ss_conf             9876357889889426899999998589989999807626012466-----700221122---4----89999986303-
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-----NPAIGGLGK---G----HLVREIDALDG-   67 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-----nps~gg~ak---g----~L~~Ei~aLgg-   67 (626)
                      |+..+|||+|||||.||+=||..+|..|.+|.|++--+-.-+--+|     |.+++...+   +    |..--+.-.++ 
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l   81 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL   81 (562)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             53211698998784888999999996699579997236889853214565302146665456899899999998743676


Q ss_pred             ----HHHHHHHHHHHHHHHHCC-----CCCCC---------C----CCHHHHHHHHHHH--HHHHHHHHCCCCCE-EEHH
Q ss_conf             ----999999886314887307-----87855---------5----3467878499999--99999997089968-9800
Q gi|254780808|r   68 ----LMGRVADAAGIQFRVLNV-----KKGPA---------V----RGPRTQADRELYR--LAMQREILSQENLD-VIQG  122 (626)
Q Consensus        68 ----~m~~~aD~~~i~~r~ln~-----skGpA---------v----~alraqvDR~~fs--~~vt~~l~~~pni~-i~~~  122 (626)
                          .+...+|.+.--...|++     ++-+.         +    +++.+ .|+..++  ...-+.+...++++ ..+-
T Consensus        82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~-~~~tG~~ll~~L~~~~~~~~~~~~~~~~  160 (562)
T COG1053          82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFA-ADKTGHELLHTLYEQLLKFSGIEIFDEY  160 (562)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf             789999999986379999999808975447876600234688888763225-6667589999999998763131111002


Q ss_pred             HHCCCCCCCCC-EEEEEE-----CCCCCCCCCCCCCCCCCCC
Q ss_conf             10112025881-132220-----3586334454333466431
Q gi|254780808|r  123 EVAGFNTEKNI-ISSIVM-----QDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus       123 eV~~l~~~~~~-~~~v~~-----~~g~~~~~~~viiatGtfl  158 (626)
                      .+++|..+++. +.|+.-     ..-..+.+++||+|||-+-
T Consensus       161 ~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         161 FVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             EEHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCE
T ss_conf             102122317985788999954788489981464899338744


No 14 
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30  E-value=2.3e-10  Score=93.21  Aligned_cols=36  Identities=42%  Similarity=0.608  Sum_probs=31.5

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9876357889889426899999998589989999807
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      |-..+|||+|||+|.||+=||+.+++ |.+|.+++-.
T Consensus         1 ~~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~   36 (583)
T PRK08205          1 MQQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKL   36 (583)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECC
T ss_conf             97431788999962999999997156-9977999788


No 15 
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29  E-value=6.9e-11  Score=96.89  Aligned_cols=35  Identities=40%  Similarity=0.604  Sum_probs=32.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             76357889889426899999998589989999807
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      .++|||+|||+|.||+-||+++++.|.+|.|+|..
T Consensus         5 ~~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~   39 (588)
T PRK08958          5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKV   39 (588)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             75679899995499999999998749938999788


No 16 
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.29  E-value=1.1e-10  Score=95.32  Aligned_cols=150  Identities=23%  Similarity=0.268  Sum_probs=82.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCCC---CCCC---------HHHHHHHHHHHHH---
Q ss_conf             35788988942689999999858--99899998076260124667002---2112---------2489999986303---
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAI---GGLG---------KGHLVREIDALDG---   67 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~ael~Cnps~---gg~a---------kg~L~~Ei~aLgg---   67 (626)
                      ++||+|||+|.||+=||+++++.  |++|.|++...     ...|+|.   ||.+         .-|..--+.+=++   
T Consensus         4 ~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~-----~~~s~s~~a~GG~~a~~~~~Ds~e~~~~Dt~~~G~~l~d   78 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY-----PMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCE   78 (582)
T ss_pred             ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             556899996699999999999868998599997899-----899861877612504479999999999999997067888


Q ss_pred             --HHHHHHHHHHHHHHHHCC-----CC---C-CCC------CCHHHH--HHHHHHH--HHHHHHHHCCCCCEEEHH-HHC
Q ss_conf             --999999886314887307-----87---8-555------346787--8499999--999999970899689800-101
Q gi|254780808|r   68 --LMGRVADAAGIQFRVLNV-----KK---G-PAV------RGPRTQ--ADRELYR--LAMQREILSQENLDVIQG-EVA  125 (626)
Q Consensus        68 --~m~~~aD~~~i~~r~ln~-----sk---G-pAv------~alraq--vDR~~fs--~~vt~~l~~~pni~i~~~-eV~  125 (626)
                        ++-..++.+.-..+.|..     ++   | .++      ...|+-  .|+..+.  ..+.+....+++|++... .++
T Consensus        79 ~~lv~~l~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~~~gGhs~~R~~~~~d~tG~~i~~~l~~~~~~~~~i~~~~~~~~~  158 (582)
T PRK09231         79 QDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQYPQIQRFDEHFVL  158 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             99999999999999999998499821579987754304871046123358986699999999999856997899759998


Q ss_pred             CCCCCCCCEEEEEECC-----CCCCCCCCCCCCCCCCCH
Q ss_conf             1202588113222035-----863344543334664310
Q gi|254780808|r  126 GFNTEKNIISSIVMQD-----NSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       126 ~l~~~~~~~~~v~~~~-----g~~~~~~~viiatGtfl~  159 (626)
                      +|+.+++.+.|+...+     -..+.|++||+|||-+-.
T Consensus       159 ~Ll~~dg~v~Ga~~~d~~~G~~~~i~AkaVILATGG~g~  197 (582)
T PRK09231        159 DILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             EEEECCCEEEEEEEEECCCCCEEEEEECEEEECCCCCCC
T ss_conf             889639808999999889996899973769986788765


No 17 
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29  E-value=6.1e-12  Score=104.34  Aligned_cols=37  Identities=30%  Similarity=0.593  Sum_probs=33.7

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9876357889889426899999998589989999807
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      |..++|||+|||+|.||+=||+++++.|++|.|++..
T Consensus         8 ~~~~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~   44 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8744778899996699999999998769958999788


No 18 
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.28  E-value=4.3e-10  Score=91.20  Aligned_cols=150  Identities=23%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCCCCH---------HHHHHHHHHHHH----
Q ss_conf             7635788988942689999999858998999980762601246670--0221122---------489999986303----
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGK---------GHLVREIDALDG----   67 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg~ak---------g~L~~Ei~aLgg----   67 (626)
                      +++|||+|||+|.||+=||+.++.. .+|+|++..+-.    .+|-  +-||++.         -|..-=+.+=+|    
T Consensus         6 ~~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~----~g~s~~a~gGi~a~~~~~Ds~e~h~~Dt~~~G~gl~d~   80 (535)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLS----EGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDE   80 (535)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCC----CCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             7628989999539999999974038-988999788999----97278870853885299999999999999953898899


Q ss_pred             -HHHHHHHHH----------HHHHHH-----------HCCCCCC-CCCCHHHHHHH--HHHHHHHHHHHHCCCCCEEEHH
Q ss_conf             -999999886----------314887-----------3078785-55346787849--9999999999970899689800
Q gi|254780808|r   68 -LMGRVADAA----------GIQFRV-----------LNVKKGP-AVRGPRTQADR--ELYRLAMQREILSQENLDVIQG  122 (626)
Q Consensus        68 -~m~~~aD~~----------~i~~r~-----------ln~skGp-Av~alraqvDR--~~fs~~vt~~l~~~pni~i~~~  122 (626)
                       ++-..++.+          ++.|.-           |.+.-|- .-+.+.+ .|.  ......+.+.+.++|||++.+.
T Consensus        81 ~lv~~l~~~a~~~i~~L~~~Gv~f~~~~~~~~~~~~~~~r~gGhs~~R~~~~-~d~tG~~i~~~L~~~~~~~~~i~~~~~  159 (535)
T PRK09077         81 DAVRFIAENAREAVQWLIDQGVPFDTDEQPNGEEGYHLTREGGHSHRRILHA-ADATGKAVQTTLVERARNHPNITVLER  159 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             9999999999999999998499565267765442210013578666755215-898689999999999970899789952


Q ss_pred             -HHCCCCCCC------CCEEEEEECC---C--CCCCCCCCCCCCCCCC
Q ss_conf             -101120258------8113222035---8--6334454333466431
Q gi|254780808|r  123 -EVAGFNTEK------NIISSIVMQD---N--SMIRCSTVVLTTGTFL  158 (626)
Q Consensus       123 -eV~~l~~~~------~~~~~v~~~~---g--~~~~~~~viiatGtfl  158 (626)
                       .+++|+.++      +.+.|+...+   |  ..+.|++||+|||-+-
T Consensus       160 ~~~~~Li~~~~~~~~~~~v~Ga~~~d~~~g~~~~i~AkaVILATGG~g  207 (535)
T PRK09077        160 HNAIDLITSDKLGLPGRRVVGAYVWNRNKERVETIRAKFVVLATGGAS  207 (535)
T ss_pred             EEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECEEEEECCCCC
T ss_conf             078899984244566987998999977899389997076999469985


No 19 
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28  E-value=2.6e-11  Score=99.87  Aligned_cols=339  Identities=21%  Similarity=0.284  Sum_probs=169.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HC---CCCCCC--CCCC-------CCCHHHHHH-HHHHHHH
Q ss_conf             635788988942689999999858998999980762---60---124667--0022-------112248999-9986303
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TI---GSMSCN--PAIG-------GLGKGHLVR-EIDALDG   67 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~---ael~Cn--ps~g-------g~akg~L~~-Ei~aLgg   67 (626)
                      +.|||||||||-||--||-++|++|.+|+|+++.+.   +|   |-==||  |+--       -++-|+-.+ =+++..-
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCH
T ss_conf             74218998887889999998864698799980586422136853788743326505899997589820677889872798


Q ss_pred             H-HHHHHHHHHHHHHHHCCCCC---CC-CCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECC
Q ss_conf             9-99999886314887307878---55-534678784999999999999708996898-001011202588113222035
Q gi|254780808|r   68 L-MGRVADAAGIQFRVLNVKKG---PA-VRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQD  141 (626)
Q Consensus        68 ~-m~~~aD~~~i~~r~ln~skG---pA-v~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~  141 (626)
                      . .....+.-+|.+.+-  +.|   |- ..|-.. +      ..+-..++.. +++|. +-+|.++..++ ....+.+.+
T Consensus        82 ~d~i~~~e~~Gi~~~e~--~~Gr~Fp~sdkA~~I-v------~~ll~~~~~~-gV~i~~~~~v~~v~~~~-~~f~l~t~~  150 (408)
T COG2081          82 EDFIDWVEGLGIALKEE--DLGRMFPDSDKASPI-V------DALLKELEAL-GVTIRTRSRVSSVEKDD-SGFRLDTSS  150 (408)
T ss_pred             HHHHHHHHHCCCEEEEC--CCCEECCCCCCHHHH-H------HHHHHHHHHC-CCEEEECCEEEEEEECC-CEEEEECCC
T ss_conf             99999998659715774--685255786666899-9------9999999975-95898146477676338-558998599


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCC
Q ss_conf             863344543334664310134443202332224751113310000-1011200544445441011000013443211478
Q gi|254780808|r  142 NSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF-MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD  220 (626)
Q Consensus       142 g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l-~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d  220 (626)
                      |..+.|.++|+|||-..-.               -..|.+....+ ...|.....+.-+.+|..-..+.. ..+......
T Consensus       151 g~~i~~d~lilAtGG~S~P---------------~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~-~~l~gls~~  214 (408)
T COG2081         151 GETVKCDSLILATGGKSWP---------------KLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFL-ERLAGLSLK  214 (408)
T ss_pred             CCEEECCEEEEECCCCCCC---------------CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCCC
T ss_conf             9889804899922886778---------------789984026899975984056866557724787899-874378656


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q ss_conf             766877743565780000000012320014777640245754144323564222553212335676433-----------
Q gi|254780808|r  221 ERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN-----------  289 (626)
Q Consensus       221 ~~~~~~s~~~~~~~~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p-----------  289 (626)
                      ..+.  +....+-...|.+.-.||---....+.+    .|....     . .-..|....-+.-+|+.+           
T Consensus       215 ~v~~--~v~~~~g~~~~g~~LfTh~GiSGPavl~----~Ss~~~-----~-~~~~~~~~i~iDllP~~~~~~l~~~l~~~  282 (408)
T COG2081         215 SVPL--SVTAGKGITFQGDLLFTHRGLSGPAVLQ----LSSYWR-----L-LEKKGGATLSIDLLPDVDAEELLRELRRA  282 (408)
T ss_pred             CEEE--EEECCCCCEEECCEEEEECCCCHHHHHH----HHHHHH-----H-HCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             5378--9844888133045679805776799999----999998-----7-41289826999648999999999999765


Q ss_pred             -----------------CCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHH----------HHHCCEEEECCHHH
Q ss_conf             -----------------452013015787764543477666898899999987543----------40010011000121
Q gi|254780808|r  290 -----------------GHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPG----------LEKVNIIRPGYAIE  342 (626)
Q Consensus       290 -----------------~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPG----------LEnAef~R~Gy~ie  342 (626)
                                       ..++.|++.+.      +..-.-.|.+.++.++...|..          +++|+..-=|  |.
T Consensus       283 ~~~kslkn~L~~~lp~rlv~~~l~~~~i------~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GG--V~  354 (408)
T COG2081         283 NPKKSLKNALAKLLPKRLVEFLLERAGI------PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGG--VD  354 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCHHHCCHHHHHHHHHHHHCCEEECCCCCCCCEEEEECCC--EE
T ss_conf             8556899999877326799999985357------874256559888999999975474433687654415774483--31


Q ss_pred             HCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHH------HHHHHHHHHHHHHHHHC
Q ss_conf             1023545656776540334156621330433466------66667789999987420
Q gi|254780808|r  343 YDYINPKELFPTLETKKISGLFLAGQINGTTGYE------EAAAQGLVAGINSARKS  393 (626)
Q Consensus       343 yd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYe------EAAAqGl~AGiNa~~~~  393 (626)
                      -+-+||+    ||++|.+|||||||-+=-++||.      -|=++|+.||-+++...
T Consensus       355 ~~eid~k----Tmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~  407 (408)
T COG2081         355 TKEIDSK----TMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL  407 (408)
T ss_pred             HHHCCHH----HHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1114877----7776408983887788884057774799999999999998656630


No 20 
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.28  E-value=3.3e-09  Score=84.92  Aligned_cols=155  Identities=23%  Similarity=0.321  Sum_probs=84.4

Q ss_pred             CCCC-----CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHH----HCCCC--CCCCCCCC-CC-HHHHHHHHHHH
Q ss_conf             9876-----3578898894268999999985--8998999980762----60124--66700221-12-24899999863
Q gi|254780808|r    1 MINR-----SYDVIVIGGGHAGCEAAAVAAK--LGASTALITHKTS----TIGSM--SCNPAIGG-LG-KGHLVREIDAL   65 (626)
Q Consensus         1 m~~~-----~~dViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~~----~~ael--~Cnps~gg-~a-kg~L~~Ei~aL   65 (626)
                      |||-     ++||+|||+|.||+=||+.+++  .|++|+|++-.+-    ..|+=  -+|..++- .. .-|...-+.+.
T Consensus         2 ~~~~~~~~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~~Sg~~A~G~~~i~a~~~~~ds~e~~~~~~~~~~   81 (610)
T PRK06854          2 MMNPEVVEVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANIDRSGAVAQGLSAINTYIGEENTPEDYVDYVRNDL   81 (610)
T ss_pred             CCCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             99984578876999999769999999999877899979999899999643899999999850789999999999999851


Q ss_pred             HHH--------HHHH-------HHHHHHHHHHHCCCCCC-CCCCHHH-HHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCC
Q ss_conf             039--------9999-------98863148873078785-5534678-78499999999999970899689800-10112
Q gi|254780808|r   66 DGL--------MGRV-------ADAAGIQFRVLNVKKGP-AVRGPRT-QADRELYRLAMQREILSQENLDVIQG-EVAGF  127 (626)
Q Consensus        66 gg~--------m~~~-------aD~~~i~~r~ln~skGp-Av~alra-qvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l  127 (626)
                      .|+        |.+.       -+.-+++|--  ...|. +-.+-|. -+.-..+...+.+.+...++|+|.+. .+++|
T Consensus        82 ~gl~d~~~v~~~~~~~~~~i~~L~~~Gv~f~r--~~~G~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~i~i~e~~~~~dL  159 (610)
T PRK06854         82 MGIVREDLVYDLARHVDSSVHLFEEWGLPIWK--DDEGKYVRRGKWQIMINGESYKPIVAEAAKKALADNIYNRVFIVDL  159 (610)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEEEECCCEECCCCHHHHHHHHHHHHCCCCCEEECCEEEEEE
T ss_conf             57845999999999889999999977998650--9999887334866632889999999999965799889851687888


Q ss_pred             CCCCC---CEEEEEE---CCC--CCCCCCCCCCCCCCC
Q ss_conf             02588---1132220---358--633445433346643
Q gi|254780808|r  128 NTEKN---IISSIVM---QDN--SMIRCSTVVLTTGTF  157 (626)
Q Consensus       128 ~~~~~---~~~~v~~---~~g--~~~~~~~viiatGtf  157 (626)
                      +.+++   +++|+..   ..|  ..+.|++||+|||-.
T Consensus       160 l~~~~~~~r~~Ga~~~d~~~g~~~~~~AkaVILATGG~  197 (610)
T PRK06854        160 LVDDNKPNRIAGAVGFSVRENKFYVFKAKAVIVATGGA  197 (610)
T ss_pred             EEECCCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCC
T ss_conf             66089777599999996168918999702799804775


No 21 
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27  E-value=2.4e-10  Score=93.01  Aligned_cols=35  Identities=37%  Similarity=0.474  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             63578898894268999999985899899998076
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      .++||+|||+|.||+=||+++++.|.+|.|++..+
T Consensus         2 ~~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~   36 (589)
T PRK08641          2 AKKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP   36 (589)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             86878998986999999999987599779997778


No 22 
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.26  E-value=1.6e-10  Score=94.22  Aligned_cols=153  Identities=24%  Similarity=0.281  Sum_probs=78.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCCH--H---------HHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076260124667002---21122--4---------89999986303
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLGK--G---------HLVREIDALDG   67 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~ak--g---------~L~~Ei~aLgg   67 (626)
                      ...+|||+|||+|.||+=||+.+++.|.+|+|+|-.+     ...|||+   ||++.  |         |.--=|.+=++
T Consensus        31 ~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~-----~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlkaG~~  105 (622)
T PTZ00139         31 IDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLF-----PTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW  105 (622)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-----CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             5776587999966999999999997699089997889-----99974899987787406789999989999999986268


Q ss_pred             -----HHHHHHHHHHHHHHHHCC--------CC---------------CCCCCCHHH--HHHHHHH--HHHHHHHHHCCC
Q ss_conf             -----999999886314887307--------87---------------855534678--7849999--999999997089
Q gi|254780808|r   68 -----LMGRVADAAGIQFRVLNV--------KK---------------GPAVRGPRT--QADRELY--RLAMQREILSQE  115 (626)
Q Consensus        68 -----~m~~~aD~~~i~~r~ln~--------sk---------------GpAv~alra--qvDR~~f--s~~vt~~l~~~p  115 (626)
                           ++-..++.+.--.+.|..        .-               +...++.|+  -.|+...  -..+......+.
T Consensus       106 l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~  185 (622)
T PTZ00139        106 LGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQSLQYN  185 (622)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             77999999999989999999997799722579987812156772034667874157887578619999999999998659


Q ss_pred             CCEEEHHHHCCCCC-CCCCEEEEEEC---CCC--CCCCCCCCCCCCCCCH
Q ss_conf             96898001011202-58811322203---586--3344543334664310
Q gi|254780808|r  116 NLDVIQGEVAGFNT-EKNIISSIVMQ---DNS--MIRCSTVVLTTGTFLR  159 (626)
Q Consensus       116 ni~i~~~eV~~l~~-~~~~~~~v~~~---~g~--~~~~~~viiatGtfl~  159 (626)
                      ...+.+-.+++|+. +++.+.|+...   .|.  .+.|++||+|||-|-.
T Consensus       186 i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~  235 (622)
T PTZ00139        186 CNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGR  235 (622)
T ss_pred             CEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCC
T ss_conf             97999889999997589959999999778990999971369987787543


No 23 
>PRK08275 putative oxidoreductase; Provisional
Probab=99.23  E-value=1e-10  Score=95.65  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=78.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHH-HCCCCCCCCCCCCCC----------HHHHHHHHHHHHHH---
Q ss_conf             35788988942689999999858--998999980762-601246670022112----------24899999863039---
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTS-TIGSMSCNPAIGGLG----------KGHLVREIDALDGL---   68 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~-~~ael~Cnps~gg~a----------kg~L~~Ei~aLgg~---   68 (626)
                      ++||+|||+|.||+-||+.+++.  |++|.|++-.+- .-+  ++..+.||++          ..|+.--+.+=+|+   
T Consensus         9 ~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~sg--~~~~~~~g~~~~~~~~~~~~e~~~~dt~~ag~gl~d~   86 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSG--AISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ   86 (554)
T ss_pred             ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             72889999719999999999986898979999799989881--7999988888734689999999999999853898779


Q ss_pred             --HHHHHHHHHHHHHHHCC-----CC---C-CCCCC----HH-H--HHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCC
Q ss_conf             --99999886314887307-----87---8-55534----67-8--784999999999999708996898001-011202
Q gi|254780808|r   69 --MGRVADAAGIQFRVLNV-----KK---G-PAVRG----PR-T--QADRELYRLAMQREILSQENLDVIQGE-VAGFNT  129 (626)
Q Consensus        69 --m~~~aD~~~i~~r~ln~-----sk---G-pAv~a----lr-a--qvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~  129 (626)
                        .-..++++.--.+.|..     ++   | .+++.    .+ +  ...-......+.+.+.++ +|.+.+.. +++|+.
T Consensus        87 ~~v~~lv~~a~~~i~~L~~~Gv~f~r~~~G~~~~~~~~~~~~~~~~~~~G~~i~~~l~~~~~~~-~i~i~~~~~~~~Ll~  165 (554)
T PRK08275         87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRA-RVLITNRIMATRLLT  165 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEEEEEE
T ss_conf             9999999989999999997699877389998600110367764321698699999999999865-996998799999998


Q ss_pred             C-CCCEEEEEEC---CC--CCCCCCCCCCCCCCC
Q ss_conf             5-8811322203---58--633445433346643
Q gi|254780808|r  130 E-KNIISSIVMQ---DN--SMIRCSTVVLTTGTF  157 (626)
Q Consensus       130 ~-~~~~~~v~~~---~g--~~~~~~~viiatGtf  157 (626)
                      + ++++.|+...   .|  ..+.|++||+|||-+
T Consensus       166 d~dGrv~Ga~~~d~~~g~~~~~~AkaVVLATGG~  199 (554)
T PRK08275        166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA  199 (554)
T ss_pred             CCCCEEEEEEEEECCCCEEEEEECCCEEEECCCC
T ss_conf             5899399999994479839999338279915764


No 24 
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.20  E-value=2.7e-10  Score=92.70  Aligned_cols=142  Identities=25%  Similarity=0.358  Sum_probs=79.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC------CCCCCC--CCCCC-------CCHHH-HHHHHHHHHHH-
Q ss_conf             578898894268999999985899899998076260------124667--00221-------12248-99999863039-
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI------GSMSCN--PAIGG-------LGKGH-LVREIDALDGL-   68 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~------ael~Cn--ps~gg-------~akg~-L~~Ei~aLgg~-   68 (626)
                      |||+|||||-||.-||..+|+.|.+|.|+|.++.--      |-==||  |+.--       ...+. |..=+..++-. 
T Consensus         1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d   80 (405)
T pfam03486         1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD   80 (405)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH
T ss_conf             97999996699999999998689959999589987501588268961407899979998625775799999998489999


Q ss_pred             HHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf             99999886314887307878---5553467878499999999999970899689-8001011202588113222035863
Q gi|254780808|r   69 MGRVADAAGIQFRVLNVKKG---PAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSM  144 (626)
Q Consensus        69 m~~~aD~~~i~~r~ln~skG---pAv~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~~~~g~~  144 (626)
                      +...-..-+|.+++-  ..|   |.-.  +|+-=.+    .++..+.. .++++ .+.+|++|..+++....+.+ .+..
T Consensus        81 ~~~ff~~~Gl~~~~e--~~GrvfP~s~--~A~~Vl~----~L~~~l~~-~gV~i~~~~~V~~I~~~~~~~~~v~~-~~~~  150 (405)
T pfam03486        81 FIAWFEELGVPLKEE--DHGRLFPVSD--KASDIVD----ALLNELKE-LGVKIRTRTRVLSVEKDDDGRFRVDT-GGEE  150 (405)
T ss_pred             HHHHHHHCCCEEEEC--CCCEEECCCC--CHHHHHH----HHHHHHHH-CCCEEEECCEEEEEEECCCCEEEEEE-CCCE
T ss_conf             999999779905977--8997978989--8699999----99999997-79789958887899975994599994-8958


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3445433346643
Q gi|254780808|r  145 IRCSTVVLTTGTF  157 (626)
Q Consensus       145 ~~~~~viiatGtf  157 (626)
                      +.++.||+|||-.
T Consensus       151 ~~a~~vIlAtGG~  163 (405)
T pfam03486       151 LEADSLVLATGGL  163 (405)
T ss_pred             EEECEEEEECCCC
T ss_conf             9727899904886


No 25 
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19  E-value=4.7e-10  Score=90.92  Aligned_cols=156  Identities=20%  Similarity=0.264  Sum_probs=82.3

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHH----HC-C--CC--CCCCCCCCCCH-HHHHHHHHHHHH-
Q ss_conf             87635788988942689999999858---998999980762----60-1--24--66700221122-489999986303-
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKL---GASTALITHKTS----TI-G--SM--SCNPAIGGLGK-GHLVREIDALDG-   67 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~---G~~v~L~~~~~~----~~-a--el--~Cnps~gg~ak-g~L~~Ei~aLgg-   67 (626)
                      -.-+|||+|||+|.||+=||+.+++.   |++|+|++.-+-    .+ |  -+  +++|.--+.-. -|..-=+.+-++ 
T Consensus         2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~l   81 (582)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDFL   81 (582)
T ss_pred             CEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             77870689999739999999999985389986999979899997089998779987178889999899999999853688


Q ss_pred             ----HHHHHHHHHHHHHHHHCC-----CC---C-----C-CCC----CHHHHHHHHH--HHHHHHHHHHCCCCCEEEHH-
Q ss_conf             ----999999886314887307-----87---8-----5-553----4678784999--99999999970899689800-
Q gi|254780808|r   68 ----LMGRVADAAGIQFRVLNV-----KK---G-----P-AVR----GPRTQADREL--YRLAMQREILSQENLDVIQG-  122 (626)
Q Consensus        68 ----~m~~~aD~~~i~~r~ln~-----sk---G-----p-Av~----alraqvDR~~--fs~~vt~~l~~~pni~i~~~-  122 (626)
                          ++-..++.+.--.+.|-.     .|   |     + .++    +.++ .|+..  ....+.+.+..+++|++... 
T Consensus        82 ~d~~lv~~l~~~a~~~v~~le~~Gv~f~r~~~G~~~~~~~gGhs~~R~~~~-~d~tG~~i~~~l~~~~~~~~gv~~~~~~  160 (582)
T PRK06069         82 ADQDAVEVLVREAPEEIRFLDHWGVPWSRDPDGRISQRPFGGMSFPRTTFA-ADKTGFYIMSTLYSRALRFDNIHFYHEH  160 (582)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCCCCEEECC-CCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             889999999998999999999769971068999887521587034500036-7875399999999999846994899778


Q ss_pred             HHCCCCCCCCCEEEEEECC---C--CCCCCCCCCCCCCCCC
Q ss_conf             1011202588113222035---8--6334454333466431
Q gi|254780808|r  123 EVAGFNTEKNIISSIVMQD---N--SMIRCSTVVLTTGTFL  158 (626)
Q Consensus       123 eV~~l~~~~~~~~~v~~~~---g--~~~~~~~viiatGtfl  158 (626)
                      .+++|+.+++.+.|+...+   |  ..+.|++||+|||-+-
T Consensus       161 ~vt~Ll~~~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g  201 (582)
T PRK06069        161 FVTSLIVENGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAG  201 (582)
T ss_pred             EEEEEEECCCEEEEEEEEECCCCEEEEEEECEEEECCCCCC
T ss_conf             98888743998999999976898299998255998988675


No 26 
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16  E-value=2.2e-10  Score=93.31  Aligned_cols=154  Identities=21%  Similarity=0.262  Sum_probs=77.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH-HH----C---CCCCCCCCCC-CCCHHHHHHHH-HHHHH-----
Q ss_conf             357889889426899999998589--9899998076-26----0---1246670022-11224899999-86303-----
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKT-ST----I---GSMSCNPAIG-GLGKGHLVREI-DALDG-----   67 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~-~~----~---ael~Cnps~g-g~akg~L~~Ei-~aLgg-----   67 (626)
                      ++||+|||+|.|||=||+.+++.|  ++|+|++... ..    .   |.-.|+..+. +.-.-....++ .+-++     
T Consensus         3 e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d~~   82 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLADQD   82 (575)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             08989999659999999999987899829999788999972688878899884379999899999999998646888899


Q ss_pred             HHHHHHHHHHHHHHHHCC-----CCCC---------CCCC-HHH--HHHHHH--HHHHHHHHHHCCCCCEEEH-HHHCCC
Q ss_conf             999999886314887307-----8785---------5534-678--784999--9999999997089968980-010112
Q gi|254780808|r   68 LMGRVADAAGIQFRVLNV-----KKGP---------AVRG-PRT--QADREL--YRLAMQREILSQENLDVIQ-GEVAGF  127 (626)
Q Consensus        68 ~m~~~aD~~~i~~r~ln~-----skGp---------Av~a-lra--qvDR~~--fs~~vt~~l~~~pni~i~~-~eV~~l  127 (626)
                      ++-..++.+.--.+.|..     +|-+         .+++ +|+  -.|+..  .-..+.+.+..+ +|++.. -.|++|
T Consensus        83 lv~~l~~~~~~~v~~Le~~Gv~f~r~~dG~~~~~~~gGhs~~R~~~~~~~tG~~i~~~L~~~~~~~-gv~i~~~~~v~~L  161 (575)
T PRK05945         83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRY-GVTIYDEWYVMRL  161 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEEEE
T ss_conf             999999999999999998699776088988801103671025554568883999999999998546-9789941788889


Q ss_pred             CCCCCCEEEEEE---CCC--CCCCCCCCCCCCCCCCH
Q ss_conf             025881132220---358--63344543334664310
Q gi|254780808|r  128 NTEKNIISSIVM---QDN--SMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       128 ~~~~~~~~~v~~---~~g--~~~~~~~viiatGtfl~  159 (626)
                      +.+++.+.|+..   ..|  ..+.|++||+|||-|-.
T Consensus       162 l~~dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        162 ILEENEAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             EEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCCC
T ss_conf             8709978999999716883899989989989999877


No 27 
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12  E-value=3.8e-10  Score=91.61  Aligned_cols=150  Identities=20%  Similarity=0.294  Sum_probs=77.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC-CCCCC------CH---HHHHHHHHHHHH-----HH
Q ss_conf             35788988942689999999858998999980762601246670-02211------22---489999986303-----99
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP-AIGGL------GK---GHLVREIDALDG-----LM   69 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp-s~gg~------ak---g~L~~Ei~aLgg-----~m   69 (626)
                      ++||+|||+|.|||=||+.+++.| +|.|++-..-.-  =.|+. +-||+      .-   -|+.-=+.+-++     ++
T Consensus         7 ~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~--sG~s~~a~gg~~a~~~~~Ds~e~~~~Dt~~~g~~l~d~~lv   83 (539)
T PRK06263          7 ITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGK--SGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV   83 (539)
T ss_pred             ECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCC--CCCHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             649899995399999999998259-979997789899--98478886677150899999999999999852688889999


Q ss_pred             HHHHHHHHHHHHHHCC--------CCC-----CC-CCC-HHH--HHHHH--HHHHHHHHHHHCCCCCEEEH-HHHCCCCC
Q ss_conf             9999886314887307--------878-----55-534-678--78499--99999999997089968980-01011202
Q gi|254780808|r   70 GRVADAAGIQFRVLNV--------KKG-----PA-VRG-PRT--QADRE--LYRLAMQREILSQENLDVIQ-GEVAGFNT  129 (626)
Q Consensus        70 ~~~aD~~~i~~r~ln~--------skG-----pA-v~a-lra--qvDR~--~fs~~vt~~l~~~pni~i~~-~eV~~l~~  129 (626)
                      -..++.+.--.+.|-.        ..|     |. +++ +|.  ..|+.  .+...+.+.+... +|++.. -.+++|+.
T Consensus        84 ~~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s~~R~~~~~~~tG~~i~~~L~~~~~~~-gv~i~~~~~~~~Ll~  162 (539)
T PRK06263         84 EILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKE-RIKILEEVMAIKLLV  162 (539)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEEEEEEE
T ss_conf             9999999999999998399851279986731004785444322357766199999999998616-977995159999998


Q ss_pred             C-CCCEEEEEEC---CC--CCCCCCCCCCCCCCCC
Q ss_conf             5-8811322203---58--6334454333466431
Q gi|254780808|r  130 E-KNIISSIVMQ---DN--SMIRCSTVVLTTGTFL  158 (626)
Q Consensus       130 ~-~~~~~~v~~~---~g--~~~~~~~viiatGtfl  158 (626)
                      + ++.+.|+...   .|  ..+.|++||+|||-+-
T Consensus       163 ~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~  197 (539)
T PRK06263        163 DELGKVFGAVFLDLRNGDIVPIYAKSTILATGGAG  197 (539)
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEECEEEECCCCCC
T ss_conf             17996999999977898299996056998989876


No 28 
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.10  E-value=2.6e-11  Score=99.93  Aligned_cols=141  Identities=22%  Similarity=0.319  Sum_probs=85.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf             9876357889889426899999998589989999807626012466700221122489999986303999999886----
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA----   76 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~----   76 (626)
                      |...+|||||||||.||+=||+.+||.|.+|+|+|-. +-.+.=.|+-   |.--.+-+.|+      +.-..+.+    
T Consensus         1 m~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg-~~pG~k~~sG---~~l~~~~l~~l------iP~~~~~aP~er   70 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERG-NSAGAKNVTG---GRLYAHSLEHI------IPGFADSAPVER   70 (428)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCC---CEECCCHHHHH------CCCCHHCCCCCE
T ss_conf             9887577899996889999999998789909999678-8899876117---54052068886------878410298624


Q ss_pred             --------------H--HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEE
Q ss_conf             --------------3--148873078785553467878499999999999970899689800-10112025881132220
Q gi|254780808|r   77 --------------G--IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVM  139 (626)
Q Consensus        77 --------------~--i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~  139 (626)
                                    .  +.|+-.+..+.+-.   .-+|.|..|-+.+-+.-++. ..+|+.+ .|+++..++++++||.+
T Consensus        71 ~V~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~y~V~R~~FD~wLa~~Ae~a-GA~i~~g~~V~~li~~~GrVvGV~~  146 (428)
T PRK10157         71 LITHEKLAFMTEKSAMTMDYCNGDETSPSQR---SYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVEA  146 (428)
T ss_pred             EEEEEEEEEECCCCCEECCCCCCCCCCCCCC---CEEEEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEECCEEEEEEC
T ss_conf             7898689998689845567778775668876---18989999999999999980-9889868581001434897999975


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             35863344543334664
Q gi|254780808|r  140 QDNSMIRCSTVVLTTGT  156 (626)
Q Consensus       140 ~~g~~~~~~~viiatGt  156 (626)
                       +|..+.|+.||.|.|-
T Consensus       147 -~G~~i~A~vVI~AdGv  162 (428)
T PRK10157        147 -DGDVIEAKTVILADGV  162 (428)
T ss_pred             -CCCEEEEEEEEEECCC
T ss_conf             -8958987179994472


No 29 
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.10  E-value=3.1e-10  Score=92.20  Aligned_cols=136  Identities=27%  Similarity=0.404  Sum_probs=77.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHH-----HHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076--260124667002211224899-----999863039999998
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLV-----REIDALDGLMGRVAD   74 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~-----~Ei~aLgg~m~~~aD   74 (626)
                      |.++|||+|||||-||..||+.+|++|.+|+|+|-..  -++-.--|=||     |.++.     +.++.+.+     .+
T Consensus         1 M~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~GGtC~n~GCiPs-----K~l~~~a~~~~~~~~~~~-----~~   70 (464)
T PRK05976          1 MAKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPS-----KALIHSAEVFHTAKKFAG-----AS   70 (464)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCH-----HHHHHHHHHHHHHHHHCC-----CC
T ss_conf             99718899999788999999999978992999978997971363683147-----999999999999865211-----10


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHH----HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC--CCCCCCCC
Q ss_conf             86314887307878555346787849----9999999999970899689800101120258811322203--58633445
Q gi|254780808|r   75 AAGIQFRVLNVKKGPAVRGPRTQADR----ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIRCS  148 (626)
Q Consensus        75 ~~~i~~r~ln~skGpAv~alraqvDR----~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~--~g~~~~~~  148 (626)
                      ..++.      ..+++..-.+++.-+    +.++..+.+.++. .+|++++++..=+ ...  .+.|.+.  .+..+.++
T Consensus        71 ~~gi~------~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~-~~v~~i~G~a~f~-~~~--~v~V~~~~g~~~~i~a~  140 (464)
T PRK05976         71 PLGIS------VQAPALDFAKVQAWKDGIVDRLTKGVAALLKK-GKVDVFHGIGRIL-DGK--TVSVETATGENEMIIPE  140 (464)
T ss_pred             CCCEE------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEC-CCC--CEEEECCCCCCEEEEEC
T ss_conf             05354------56765389999999999999987889999986-8928997268865-898--11444278873699826


Q ss_pred             CCCCCCCCC
Q ss_conf             433346643
Q gi|254780808|r  149 TVVLTTGTF  157 (626)
Q Consensus       149 ~viiatGtf  157 (626)
                      .+|||||.-
T Consensus       141 ~iIIATGs~  149 (464)
T PRK05976        141 NLLIATGSR  149 (464)
T ss_pred             EEEECCCCC
T ss_conf             699876888


No 30 
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.07  E-value=2.8e-09  Score=85.42  Aligned_cols=159  Identities=16%  Similarity=0.312  Sum_probs=89.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCC----------C--CHHHHHHHHHHHHH--
Q ss_conf             7635788988942689999999858998999980762601246-6700221----------1--22489999986303--
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGG----------L--GKGHLVREIDALDG--   67 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg----------~--akg~L~~Ei~aLgg--   67 (626)
                      ..+|||+|||+|.||.=||+.+|+.|++|+|+|..+-.=|-.. |+-.+.+          +  -.-....|+-..++  
T Consensus        58 ~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~~  137 (506)
T PRK06481         58 KDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT  137 (506)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             69846799898899999999999889978999689999951888558845269999997389999999999999734888


Q ss_pred             ----HHHHHHHHHHHHHHHHC----------CCCCCCCCCHHHHHHHH----HHHHHHHHHHHCCCCCEE-EHHHHCCCC
Q ss_conf             ----99999988631488730----------78785553467878499----999999999970899689-800101120
Q gi|254780808|r   68 ----LMGRVADAAGIQFRVLN----------VKKGPAVRGPRTQADRE----LYRLAMQREILSQENLDV-IQGEVAGFN  128 (626)
Q Consensus        68 ----~m~~~aD~~~i~~r~ln----------~skGpAv~alraqvDR~----~fs~~vt~~l~~~pni~i-~~~eV~~l~  128 (626)
                          ++-..+|.++--..+|.          .+.|..+....-..|-.    .+...+.+.++.. ++++ .+-.|++|.
T Consensus       138 ~d~~l~~~~~~~s~~~idWl~~~G~~~~~~~~~g~~~~~~~~~~~~g~~~g~~lv~~l~~~~~~~-gv~i~~~t~~~~L~  216 (506)
T PRK06481        138 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVNADVTKIT  216 (506)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC-CCEEEECCEEEEEE
T ss_conf             88999999998389999999975984666766788776703434887647999999999999877-98799877832323


Q ss_pred             CCCCCEEEEEEC--CC--CCCCCCCCCCCCCCCCHHHH
Q ss_conf             258811322203--58--63344543334664310134
Q gi|254780808|r  129 TEKNIISSIVMQ--DN--SMIRCSTVVLTTGTFLRGVI  162 (626)
Q Consensus       129 ~~~~~~~~v~~~--~g--~~~~~~~viiatGtfl~g~~  162 (626)
                      .++++|+||...  .+  ..+.+++||||||-|-+..=
T Consensus       217 ~~dG~V~GV~~~~~~g~~~~i~akaVILATGGf~~N~e  254 (506)
T PRK06481        217 EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKK  254 (506)
T ss_pred             ECCCCEEEEEEEECCCEEEEEECCEEEECCCCCCCCHH
T ss_conf             05893789999968984999973569997788776799


No 31 
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06  E-value=6.4e-09  Score=82.92  Aligned_cols=149  Identities=22%  Similarity=0.256  Sum_probs=83.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC------------HHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998076260124667002---2112------------24899999863039
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG------------KGHLVREIDALDGL   68 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a------------kg~L~~Ei~aLgg~   68 (626)
                      ++|||+|||+|.||+=||+++|+.|.+|.+++.+..-   + .+||+   ||++            ..|..--|.+=+++
T Consensus        32 ~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~~~---~-~snS~~AqGGInAa~~~~~~~DS~e~H~~DTlkaG~gl  107 (638)
T PRK07573         32 RKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQDSP---R-RAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFR  107 (638)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC---C-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             6488899996699999999999749956999922899---9-62088875556740468999989899999999862787


Q ss_pred             -----HHHHHHHHHHHHHHHC----------------CCCC----C----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             -----9999988631488730----------------7878----5----553467878499999999999970899689
Q gi|254780808|r   69 -----MGRVADAAGIQFRVLN----------------VKKG----P----AVRGPRTQADRELYRLAMQREILSQENLDV  119 (626)
Q Consensus        69 -----m~~~aD~~~i~~r~ln----------------~skG----p----Av~alraqvDR~~fs~~vt~~l~~~pni~i  119 (626)
                           +-..++++.--.+.|.                +.-|    |    |..+...++=..+|+.-.++ + ..+||++
T Consensus       108 ~d~~~V~~l~~~ap~~I~~L~~~Gv~Fdr~~~g~l~~~~~GGhS~~Ri~ha~d~TG~~i~~~l~~~L~~~-~-~~~~I~~  185 (638)
T PRK07573        108 AREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYSALSRQ-I-AAGTVEL  185 (638)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH-H-HCCCCEE
T ss_conf             7499999999988999999997599875689986604456676652477328961689999999999998-7-3389889


Q ss_pred             EH-HHHCCCCCCCCCEEEEEECC---C--CCCCCCCCCCCCCCCC
Q ss_conf             80-01011202588113222035---8--6334454333466431
Q gi|254780808|r  120 IQ-GEVAGFNTEKNIISSIVMQD---N--SMIRCSTVVLTTGTFL  158 (626)
Q Consensus       120 ~~-~eV~~l~~~~~~~~~v~~~~---g--~~~~~~~viiatGtfl  158 (626)
                      .. -.|.+|+.+++.+.|+...+   |  ..+.+++||||||-+-
T Consensus       186 ~~~~~~~dLi~~dg~~~Gv~~~d~~~G~~~~~~AkaVILATGG~g  230 (638)
T PRK07573        186 FTRTEMLDLVVVDGRARGIVARNLVTGEIERHAADAVVLATGGYG  230 (638)
T ss_pred             EECEEEEEEEEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCC
T ss_conf             935799998998999999999965899489997167998578575


No 32 
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.05  E-value=3.3e-09  Score=84.91  Aligned_cols=148  Identities=23%  Similarity=0.330  Sum_probs=82.2

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC---CCCCCH------H--HHHHH-HHHHHH--
Q ss_conf             876357889889426899999998589989999807626012466700---221122------4--89999-986303--
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA---IGGLGK------G--HLVRE-IDALDG--   67 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps---~gg~ak------g--~L~~E-i~aLgg--   67 (626)
                      |.++|||+|||+|.||+=||+++++ +.+|.|++..+-     ..++|   -||++.      +  +.+.+ +.+=+|  
T Consensus         7 ~~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~-----~~g~s~~a~GGi~a~~~~~Ds~e~h~~Dt~kaG~gl~   80 (556)
T PRK07395          7 LPSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTL-----KTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC   80 (556)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC-----CCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             8865978999963999999997235-998899989999-----9962667636051727999999999999999558888


Q ss_pred             ---HHHHHHH----------HHHHHHHHHCCCCC-C-----CCC-CHHHH--HHH--HHHHHHHHHHHHCCCCCEEEHH-
Q ss_conf             ---9999998----------86314887307878-5-----553-46787--849--9999999999970899689800-
Q gi|254780808|r   68 ---LMGRVAD----------AAGIQFRVLNVKKG-P-----AVR-GPRTQ--ADR--ELYRLAMQREILSQENLDVIQG-  122 (626)
Q Consensus        68 ---~m~~~aD----------~~~i~~r~ln~skG-p-----Av~-alraq--vDR--~~fs~~vt~~l~~~pni~i~~~-  122 (626)
                         ++-..++          .-++.|.   +..| .     +++ .+|.-  .|+  ..+.+.+.+.+..++||++... 
T Consensus        81 d~~~v~~l~~~a~~~i~~L~~~Gv~f~---r~~~~~~~~~~gghs~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~i~~~~  157 (556)
T PRK07395         81 DPEAVRFLVEQAPEAIASLVELGVAFD---RHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLERPNIEIISQA  157 (556)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCE---ECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             899999999999999999997699705---57994400121686666124457775589999999999967995698889


Q ss_pred             HHCCCCCC--CCCEEEEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf             10112025--881132220358---6334454333466431
Q gi|254780808|r  123 EVAGFNTE--KNIISSIVMQDN---SMIRCSTVVLTTGTFL  158 (626)
Q Consensus       123 eV~~l~~~--~~~~~~v~~~~g---~~~~~~~viiatGtfl  158 (626)
                      .+++|..+  ++.+.|+.....   ..+.|++||+|||-+-
T Consensus       158 ~~~~Ll~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~g  198 (556)
T PRK07395        158 LALDLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG  198 (556)
T ss_pred             EEEEEEEECCCCEEEEEEEEECCCEEEEECCEEEECCCCCC
T ss_conf             99999995589879999999899699997898998999871


No 33 
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.01  E-value=4.8e-09  Score=83.80  Aligned_cols=138  Identities=29%  Similarity=0.431  Sum_probs=79.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             763578898894268999999985899899998076--260124667002211224899999863039999998863148
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      .++|||+|||||.||-.||+.+||.|.+|+|+|-.+  -++-.--|-||     |-++ .-.+... .+.. .+..++..
T Consensus         1 M~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GGtC~~~GCiPs-----K~l~-~~a~~~~-~~~~-~~~~gi~~   72 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCMPS-----KALI-AAAEAFH-EAKH-AAKFGIHV   72 (460)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHH-----HHHH-HHHHHHH-HHHH-HHHCCCCC
T ss_conf             9816989999778999999999969790999958998861050571515-----9999-9999999-9975-34148666


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             8730787855534678784999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                      .  ..-.++++.. |.+--.+.+...+.+.+...+++++++++..=+  +++.   +....+..+.++.+|||||.
T Consensus        73 ~--~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~--~~~~---v~v~~~~~i~a~~vIIATGs  140 (460)
T PRK06292         73 D--PKIDGKKVMA-RVRSERDRFVGGVVEGLEKKPKIDKIKGTARFI--DPNT---VEVGNGEEIEAKNIVIATGS  140 (460)
T ss_pred             C--CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCCE---EEECCCEEEEECEEEEECCC
T ss_conf             7--8409999999-999999998656899997338819998489963--7988---99789779961589996089


No 34 
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.00  E-value=6.9e-09  Score=82.65  Aligned_cols=140  Identities=20%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCHHH------CC----CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998-07626------01----2466700221122489999986303999
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTST------IG----SMSCNPAIGGLGKGHLVREIDALDGLMG   70 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~-~~~~~------~a----el~Cnps~gg~akg~L~~Ei~aLgg~m~   70 (626)
                      |.-+|||+|||||.||-.||+.+|++|.+|+|+| -+|++      +|    --=|=||     |-++..  -.+...+-
T Consensus        38 ~~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPS-----K~L~~a--a~~~~~~~  110 (541)
T PTZ00052         38 LTYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPK-----KLMHYA--GLMGSSFK  110 (541)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHH-----HHHHHH--HHHHHHHH
T ss_conf             78779989999788999999999988990999942455666871779501178362899-----999999--99999997


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC-C-CHHHHHH--HHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEE-EEECC--CC
Q ss_conf             999886314887307878555-3-4678784--9999999999997089968980010112025881132-22035--86
Q gi|254780808|r   71 RVADAAGIQFRVLNVKKGPAV-R-GPRTQAD--RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISS-IVMQD--NS  143 (626)
Q Consensus        71 ~~aD~~~i~~r~ln~skGpAv-~-alraqvD--R~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~-v~~~~--g~  143 (626)
                      .-+...+++.     + .+.+ | ++...++  ....+..+...++ ..+++++++...=.  +++.+.. +...+  ..
T Consensus       111 ~~~~~~Gi~~-----~-~~~~d~~~l~~~~~~~i~~l~~~~~~~l~-~~~V~~i~G~a~f~--~~~tV~v~~~~~~g~~~  181 (541)
T PTZ00052        111 LDSQMYGWKT-----S-SLSHEWGKLVETVQSHIRSLNFSYRTGLR-SSNVKYINGLAKLK--DPHTVEYYLKGDNSQEE  181 (541)
T ss_pred             HHHHHCCCCC-----C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEEE--CCCEEEEEECCCCCCEE
T ss_conf             5688658327-----8-76316999999999999998888998887-68968998589983--69878998425888527


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             33445433346643
Q gi|254780808|r  144 MIRCSTVVLTTGTF  157 (626)
Q Consensus       144 ~~~~~~viiatGtf  157 (626)
                      .+.++.+|||||.-
T Consensus       182 ~i~a~~iIIATGS~  195 (541)
T PTZ00052        182 TITSKYILIATGCR  195 (541)
T ss_pred             EEEEEEEEECCCCC
T ss_conf             99952799857888


No 35 
>PRK06370 mercuric reductase; Validated
Probab=99.00  E-value=6.8e-10  Score=89.80  Aligned_cols=136  Identities=24%  Similarity=0.309  Sum_probs=77.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             763578898894268999999985899899998076--260124667002211224899999863039999998863148
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      .++|||+|||||-||..||..+|+.|.+|+|+|-.+  -++..--|-||---+....+..+++..        ..-++. 
T Consensus         2 ~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~GG~Cln~GCiPsK~l~~~a~~~~~~~~~--------~~~g~~-   72 (459)
T PRK06370          2 AQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRA--------AEYGVS-   72 (459)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH--------HCCCCC-
T ss_conf             87175899998889999999999689919999689977432146835289999999999999776--------607922-


Q ss_pred             HHHCCCCCCCC--CCHHHHHH--HHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             87307878555--34678784--999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r   81 RVLNVKKGPAV--RGPRTQAD--RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        81 r~ln~skGpAv--~alraqvD--R~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                          .+..+.+  .++....|  +...+..+...+++.+++++++++..=.. . ..+    ...+..+.++.+|||||.
T Consensus        73 ----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~~-~-~tv----~v~~~~~~a~~iiIATGs  142 (459)
T PRK06370         73 ----IGGPVAVDFKAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFEG-P-NTV----RVGGELLRAKRIFINTGA  142 (459)
T ss_pred             ----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-C-CCC----CCCCEEEEEEEEEECCCC
T ss_conf             ----588677689999999999998752338988522587299996899715-6-753----569859976289988898


Q ss_pred             C
Q ss_conf             3
Q gi|254780808|r  157 F  157 (626)
Q Consensus       157 f  157 (626)
                      -
T Consensus       143 ~  143 (459)
T PRK06370        143 R  143 (459)
T ss_pred             C
T ss_conf             6


No 36 
>PRK06116 glutathione reductase; Validated
Probab=99.00  E-value=1.9e-09  Score=86.67  Aligned_cols=136  Identities=22%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076--26012466700221122489999986303999999886314
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      |.++|||+|||||-||--||..+|+.|.+|+|+|-+.  -++..--|-||---+...++.+++...+..++.......+.
T Consensus         1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~~~~~~d   80 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDVTENKFD   80 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99748889999888999999999968796999937997852541571646999999999999997787558136877528


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             88730787855534678784999----99999999970899689800101120258811322203586334454333466
Q gi|254780808|r   80 FRVLNVKKGPAVRGPRTQADREL----YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG  155 (626)
Q Consensus        80 ~r~ln~skGpAv~alraqvDR~~----fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatG  155 (626)
                                  |+- ..-.++.    .+..+.+.+++ .++++++++..=+  ++..+.    ..+..+.++.+|||||
T Consensus        81 ------------~~~-~~~~~~~~i~~l~~~~~~~~~~-~~V~~~~g~a~f~--~~~tv~----v~~~~i~a~~ivIATG  140 (450)
T PRK06116         81 ------------WKK-LIANRDAYIDRLHGSYRRGLEN-NGVDLIEGFARFV--DAHTVE----VNGETYTADHILIATG  140 (450)
T ss_pred             ------------HHH-HHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEC--CCCCCC----CCCEEEEEEEEEECCC
T ss_conf             ------------999-9999999999999999999876-8968997068872--687403----5982985417999878


Q ss_pred             CC
Q ss_conf             43
Q gi|254780808|r  156 TF  157 (626)
Q Consensus       156 tf  157 (626)
                      .-
T Consensus       141 s~  142 (450)
T PRK06116        141 GR  142 (450)
T ss_pred             CC
T ss_conf             97


No 37 
>PRK10015 hypothetical protein; Provisional
Probab=99.00  E-value=9.8e-11  Score=95.80  Aligned_cols=145  Identities=23%  Similarity=0.346  Sum_probs=82.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHH---HHH-H--------
Q ss_conf             9876357889889426899999998589989999807626012466700221122489999986---303-9--------
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA---LDG-L--------   68 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~a---Lgg-~--------   68 (626)
                      |...+|||||||||.||+=||+.+|+.|++|+|+|-- +.+|.=.|+   ||.--.+-..|+--   -+. +        
T Consensus         1 m~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg-~~~G~k~~s---Ggvl~~~~le~liP~~~~~aP~er~V~~~~   76 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG-DSAGCKNMT---GGRLYAHTLEAIIPGFAASAPVERKVTREK   76 (429)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCC---CCEECHHHHHHHCCCCCCCCCCCEEEEEEE
T ss_conf             9976158899996889999999998779919999678-879985512---637416278886889644798521589878


Q ss_pred             HHHHHHHHHH--HHHHHCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCC
Q ss_conf             9999988631--4887307--87855534678784999999999999708996898001-01120258811322203586
Q gi|254780808|r   69 MGRVADAAGI--QFRVLNV--KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNS  143 (626)
Q Consensus        69 m~~~aD~~~i--~~r~ln~--skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~  143 (626)
                      +.-.++.+++  .|+....  ..-..-.-+|++.||-+-.++.     +. ..+|+.+. |++|..++++++||.+.+ .
T Consensus        77 ~~~l~~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae-----~a-Ga~i~~g~~v~~l~~e~g~V~GV~tg~-~  149 (429)
T PRK10015         77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-----QA-GAQFIPGVRVDALVREGNKVTGVQAGD-D  149 (429)
T ss_pred             EEEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHH-----HC-CCEEECCCEEEEEEEECCEEEEEECCC-C
T ss_conf             9998789806667656786766778659899999999999999-----75-999977958999996299899998798-2


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3344543334664
Q gi|254780808|r  144 MIRCSTVVLTTGT  156 (626)
Q Consensus       144 ~~~~~~viiatGt  156 (626)
                      .+.++.||+|.|-
T Consensus       150 ~l~A~vVI~AdGv  162 (429)
T PRK10015        150 ILEANVVILADGV  162 (429)
T ss_pred             EEEEEEEEEECCC
T ss_conf             6886589981562


No 38 
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.00  E-value=2e-09  Score=86.48  Aligned_cols=140  Identities=21%  Similarity=0.348  Sum_probs=77.8

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH-----HCCC----CCCCCCCCCCCHHHHHH-HHHHHHHHHHH
Q ss_conf             87635788988942689999999858998999980762-----6012----46670022112248999-99863039999
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS-----TIGS----MSCNPAIGGLGKGHLVR-EIDALDGLMGR   71 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~-----~~ae----l~Cnps~gg~akg~L~~-Ei~aLgg~m~~   71 (626)
                      |.++|||+|||||-||..||..+||.|.+|+|+|-.+.     .+|-    --|=||     |-++.. |+-.   .+.+
T Consensus         1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPs-----K~L~~~a~~~~---~~~~   72 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPS-----KALLASSEEFE---NAGH   72 (475)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCH-----HHHHHHHHHHH---HHHH
T ss_conf             996188999998889999999999789919999725776778888014472770130-----99999999999---9987


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHH-HH----HHHHHHHHHHHCCCCCEEEHHHHCCCCCCC-CCEEEEEECCCCCC
Q ss_conf             9988631488730787855534678784-99----999999999970899689800101120258-81132220358633
Q gi|254780808|r   72 VADAAGIQFRVLNVKKGPAVRGPRTQAD-RE----LYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQDNSMI  145 (626)
Q Consensus        72 ~aD~~~i~~r~ln~skGpAv~alraqvD-R~----~fs~~vt~~l~~~pni~i~~~eV~~l~~~~-~~~~~v~~~~g~~~  145 (626)
                      .+...++.      ..++.+.-..+ .+ ++    .+.+.+...++. .++++++++..=+.... ...+.+....+..+
T Consensus        73 ~~~~~Gi~------~~~~~~d~~~~-~~~k~~~~~~~~~~~~~~~~~-~~v~~~~G~a~f~~~~~~~~~v~v~~~~~~~i  144 (475)
T PRK06327         73 HFADHGIS------VDGVKIDVAKM-IGRKDTVVKQMTGGIEGLFKK-NKITVLKGRGSFVGKTDAGYEIKVKGEGETVV  144 (475)
T ss_pred             HHHHCCEE------CCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEEECCCCCEEEEECCCCCCEE
T ss_conf             89865841------46763079999-999999999988899999871-69389999999961478845999838985099


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             445433346643
Q gi|254780808|r  146 RCSTVVLTTGTF  157 (626)
Q Consensus       146 ~~~~viiatGtf  157 (626)
                      .++.+|||||.-
T Consensus       145 ~a~~iiIATGs~  156 (475)
T PRK06327        145 KAKNVIIATGSE  156 (475)
T ss_pred             EECEEEECCCCC
T ss_conf             968799978996


No 39 
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99  E-value=3e-09  Score=85.19  Aligned_cols=137  Identities=23%  Similarity=0.340  Sum_probs=72.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076--26012466700221122489999986303999999886314
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      |.++|||+|||||-||..||+.+|++|.+|+|+|.+.  -++-.--|=||     |-++ +.-+.. -.+.+.+..-++.
T Consensus         1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~GGtC~n~GCiPs-----K~l~-~~a~~~-~~~~~~~~~~gi~   73 (467)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYWGGVCLNVGCIPS-----KALL-RNAELA-HIFTKEAKTFGIS   73 (467)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCHHH-----HHHH-HHHHHH-HHHHHHHHHCCCC
T ss_conf             98568789999788999999999978990999948996875061760113-----9999-999999-9999788867977


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHH-----HHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC--CCCCCCCCCCCC
Q ss_conf             8873078785553467878499-----999999999970899689800101120258811322203--586334454333
Q gi|254780808|r   80 FRVLNVKKGPAVRGPRTQADRE-----LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--DNSMIRCSTVVL  152 (626)
Q Consensus        80 ~r~ln~skGpAv~alraqvDR~-----~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~--~g~~~~~~~vii  152 (626)
                              +.+-.-..+..+|.     .....+. .+....++++++++..=+ .. + ...|...  .+..+.++.+|+
T Consensus        74 --------~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~G~a~f~-~~-~-~v~V~~~~~~~~~i~a~~iiI  141 (467)
T PRK07818         74 --------GEVTFDYGAAFDRSRKVAEGRVAGVH-FLMKKNKITEIHGYGTFT-DA-N-TLEVDLNDGGTETVTFDNAII  141 (467)
T ss_pred             --------CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHCCEEEEECEEEEE-CC-C-EEEEECCCCCEEEEEEEEEEE
T ss_conf             --------42416899999999999999875699-999867939994307982-48-5-138971789627999526898


Q ss_pred             CCCCC
Q ss_conf             46643
Q gi|254780808|r  153 TTGTF  157 (626)
Q Consensus       153 atGtf  157 (626)
                      |||.-
T Consensus       142 ATGs~  146 (467)
T PRK07818        142 ATGSS  146 (467)
T ss_pred             CCCCC
T ss_conf             76887


No 40 
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.98  E-value=5.6e-09  Score=83.32  Aligned_cols=151  Identities=18%  Similarity=0.204  Sum_probs=84.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCCH-------HHHHHH-HHHHHH---
Q ss_conf             8763578898894268999999985899899998076260124667002---21122-------489999-986303---
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLGK-------GHLVRE-IDALDG---   67 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~ak-------g~L~~E-i~aLgg---   67 (626)
                      ||...||+|||+|.||+=||+++ +.|.+|+|++..+-.     .+||.   ||++.       -..+.. +.+=.+   
T Consensus         1 ~~~~tDVlVIGsG~AGl~AAi~a-~~~~~V~li~K~~~~-----~~nS~~A~GGi~aa~~~dd~~~~~~DtlkaG~~~~d   74 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYCALNL-RKDLKIVLVSKKKLN-----ECNTYLAQGGISVARNKEDIPTFVEDTLKAGQYKNN   74 (433)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHC-CCCCCEEEEECCCCC-----CCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf             98648789999569999999961-789988999788999-----976687602724732899879999999986578788


Q ss_pred             --HHHHHHHHHHHHHHHHCC-------C-CC-----CCCCCH-H---HHHHHHH--HHHHHHHHHHCCCCCEEEHH-HHC
Q ss_conf             --999999886314887307-------8-78-----555346-7---8784999--99999999970899689800-101
Q gi|254780808|r   68 --LMGRVADAAGIQFRVLNV-------K-KG-----PAVRGP-R---TQADREL--YRLAMQREILSQENLDVIQG-EVA  125 (626)
Q Consensus        68 --~m~~~aD~~~i~~r~ln~-------s-kG-----pAv~al-r---aqvDR~~--fs~~vt~~l~~~pni~i~~~-eV~  125 (626)
                        ++-..++.+.--.++|-.       . .|     ..+++. |   + -|+-.  ..+.+.+.+..++||++..+ .++
T Consensus        75 ~~lv~~l~~~s~~ai~~L~~~Gv~f~r~~~g~~~~r~GgHs~~R~~~~-~d~tG~~i~~~L~~~~~~~~~I~i~~~~~~~  153 (433)
T PRK06175         75 LEAVKILANESIENINKLIDMGLNFDKDEKELNYTKEGAHSVNRIVHF-KDYTGKKVEKILLKKVKKRKNITIIENCELV  153 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             999999999889999999975986211688724541465667852335-8862999999999999717996799738878


Q ss_pred             CCCCCCCCEEEEEEC---CCCCCCCCCCCCCCCCCCH
Q ss_conf             120258811322203---5863344543334664310
Q gi|254780808|r  126 GFNTEKNIISSIVMQ---DNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       126 ~l~~~~~~~~~v~~~---~g~~~~~~~viiatGtfl~  159 (626)
                      +|+.+++.+.|+...   .-..+.+++||+|||-|-+
T Consensus       154 ~Li~~~~~v~G~v~~~~g~~~~i~AkaVILATGG~g~  190 (433)
T PRK06175        154 DIIENDNTCIGGILLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             EEEEECCEEEEEEEEECCCEEEEEECEEEECCCCCCC
T ss_conf             8787389899999995797899983669986798654


No 41 
>PRK10262 thioredoxin reductase; Provisional
Probab=98.97  E-value=3.6e-10  Score=91.77  Aligned_cols=112  Identities=18%  Similarity=0.295  Sum_probs=66.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76357889889426899999998589989999807626012466700221122489999986303999999886314887
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      .|+|||+|||||-||.=||..++|+|.+|.|++-.. .-|.+.=.+-+                                
T Consensus         4 ~k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~-~GG~l~~~~~i--------------------------------   50 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEV--------------------------------   50 (321)
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCE--------------------------------
T ss_conf             606009999976899999999998699679996059-68742005603--------------------------------


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             30787855534678784999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r   83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                      -|.--.|...+-...++      .+.+-+... +.+++.++|+.+...++. ..+. .+...+.+++||||||.
T Consensus        51 ~n~pg~~~~i~G~~l~~------~~~~q~~~~-~~~i~~~~v~~i~~~~~~-f~v~-t~~g~~~a~aViiAtG~  115 (321)
T PRK10262         51 ENWPGDPNDLTGPLLME------RMHEHATKF-ETEIIFDHINKVDLQNRP-FRLT-GDSGEYTCDALIIATGA  115 (321)
T ss_pred             EECCCCCCCCCHHHHHH------HHHHHHHHH-CCEEEECCCCEEEEECCC-EEEE-CCCCEEEEEEEEEEECC
T ss_conf             56178887647799999------999999970-874894123157740365-1997-58988999899996468


No 42 
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95  E-value=2.8e-09  Score=85.43  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=76.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
                      |++-|||||||||-||.-||..+||.|.+|+++|..  .+|-..|..+-                               
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~--~~GGqi~~t~~-------------------------------   47 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQITITSE-------------------------------   47 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCEECCC-------------------------------
T ss_conf             984472999995688999999999789967999668--86865563685-------------------------------


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             730787855534678784999999999999708996898001011202588113222035863344543334664310
Q gi|254780808|r   82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      +-|.   |....    +.-....+.|++-.++. .+++.+++|+++...+. +..|.|..+ .+.+++||||||.--+
T Consensus        48 VeNY---PG~~~----isG~eL~~~m~~qA~~~-Gve~~~~~V~~i~~~g~-~k~V~t~~g-~~~ak~VIIATGa~pr  115 (555)
T TIGR03143        48 VVNY---PGILN----TTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPR  115 (555)
T ss_pred             EEEC---CCCCC----CCHHHHHHHHHHHHHHC-CCEEEEEEEEEEECCCC-CEEEEECCC-EEEECEEEECCCCCCC
T ss_conf             6878---88779----86899999999999977-96999656999973799-589998897-8996979999999714


No 43 
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.94  E-value=7.1e-09  Score=82.60  Aligned_cols=142  Identities=23%  Similarity=0.250  Sum_probs=73.5

Q ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987-635788988942689999999858998999980762---6012466700221122489999986303999999886
Q gi|254780808|r    1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA   76 (626)
Q Consensus         1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~   76 (626)
                      ||+ ++|||+|||||.||--||..+|+.|.+|+|+|..+.   ++-.--|=||     |- |.+-...+-..  +.....
T Consensus         1 ~m~m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPs-----K~-L~~~a~~~~~~--~~~~~~   72 (465)
T PRK05249          1 MMHMYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPS-----KA-LREAVLRIIGF--NQNPLY   72 (465)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHH-----HH-HHHHHHHHHHH--HHCCCC
T ss_conf             99877789899997789999999999789929999769997665344461767-----99-99999999998--755424


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCCCCCC
Q ss_conf             314887307878555346787849999999999997089968980010112025881132220358--633445433346
Q gi|254780808|r   77 GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLTT  154 (626)
Q Consensus        77 ~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~viiat  154 (626)
                      .. +..-..-..+++..- .+--.......++..++. .++++++++..=+. ..  ...|...+|  ..+.++.+||||
T Consensus        73 ~~-~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~-~gv~~i~G~a~f~~-~~--~v~V~~~dg~~~~i~a~~iIIAT  146 (465)
T PRK05249         73 RD-YRVKLRITFADLLAR-ADRVINKQVEVRRGFYAR-NRVEVIQGRASFVD-PH--TVEVECPDGSVETLTAEKIVIAT  146 (465)
T ss_pred             CC-CCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH-CCCEEEEEEEEECC-CC--CEEEECCCCCEEEEEEEEEEEEC
T ss_conf             65-566686289999999-999998887899999986-89789984789727-98--40443489962899842799953


Q ss_pred             CC
Q ss_conf             64
Q gi|254780808|r  155 GT  156 (626)
Q Consensus       155 Gt  156 (626)
                      |.
T Consensus       147 Gs  148 (465)
T PRK05249        147 GS  148 (465)
T ss_pred             CC
T ss_conf             75


No 44 
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.94  E-value=1.2e-08  Score=81.06  Aligned_cols=124  Identities=26%  Similarity=0.332  Sum_probs=74.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             763578898894268999999985899899998076260----1246670022112248999998630399999988631
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~----ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      +++|||+|||||-||..||..+|+.|.+|+|+|-+...+    ..--|-||     |- |++.-..       ..|-...
T Consensus         1 M~~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPs-----K~-Li~~a~~-------~~d~~~~   67 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPT-----KT-LVHDAQQ-------HTDFVRA   67 (441)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH-----HH-HHHHHHH-------CCCHHHH
T ss_conf             997898999978899999999997899299997589987732456685888-----99-9999987-------2579999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCC
Q ss_conf             4887307878555346787849999999999997089968980010112025881132220358-63344543334664
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGT  156 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g-~~~~~~~viiatGt  156 (626)
                      ..|.      -++      +++  ........+...+++++++++..=+.  ++. ..|...+| ..+.++.+|||||.
T Consensus        68 ~~~~------~~~------~~~--~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~-v~V~~~~g~~~l~a~~ivIATGs  129 (441)
T PRK08010         68 IQRK------NEV------VNF--LRNKNFHNLADMPNIDVIDGQAEFIN--NHS-LRVHRPDGNLEIHGEKIFINTGA  129 (441)
T ss_pred             HHHH------HHH------HHH--HHHCCHHHHHHCCCCEEEEEEEEECC--CCC-EEEECCCCCEEEEEEEEEEECCC
T ss_conf             9879------999------999--87553988854269589998999857--982-37764899899982589993377


No 45 
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.93  E-value=1.7e-08  Score=79.94  Aligned_cols=152  Identities=16%  Similarity=0.217  Sum_probs=93.9

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC--H--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987635788988942689999999858998999980762601246670022112--2--489999986303999999886
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--K--GHLVREIDALDGLMGRVADAA   76 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a--k--g~L~~Ei~aLgg~m~~~aD~~   76 (626)
                      |.++.|||+|||||.+|.=+|+.+|+.|++|.++|.++..-..-.-.|.....|  .  -.+.+++....-+..    ..
T Consensus         1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~----~~   76 (391)
T PRK08020          1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQA----MR   76 (391)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHH----HC
T ss_conf             99999848999936999999999986699789994899876665579873389878899999998888487786----25


Q ss_pred             HHHHHHHCCCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf             3148873078785-----------5534678784999999999999708996898-001011202588113222035863
Q gi|254780808|r   77 GIQFRVLNVKKGP-----------AVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSM  144 (626)
Q Consensus        77 ~i~~r~ln~skGp-----------Av~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~  144 (626)
                      ...++.+.....+           ....+..-|.+........+.++++|||++. ..+|+++...+.. +.+.+.+|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~-~~v~l~~g~~  155 (391)
T PRK08020         77 CHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDG-WELELADGET  155 (391)
T ss_pred             CCCEEEEEEECCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCE-EEEEECCCCE
T ss_conf             687148986127885587254432897540121269999999999983899699958802688974986-8999489999


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3445433346643
Q gi|254780808|r  145 IRCSTVVLTTGTF  157 (626)
Q Consensus       145 ~~~~~viiatGtf  157 (626)
                      +.++-+|.|-|..
T Consensus       156 i~a~lvIgADG~~  168 (391)
T PRK08020        156 IQAKLVIGADGAN  168 (391)
T ss_pred             EEECEEEEECCCC
T ss_conf             9837999907997


No 46 
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92  E-value=3.2e-08  Score=77.89  Aligned_cols=39  Identities=41%  Similarity=0.618  Sum_probs=36.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             987635788988942689999999858998999980762
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      |..++|||+|||+|+||.=||+.+|..|.+|+|+|..+.
T Consensus         1 ~~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~   39 (560)
T PRK07843          1 MTGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH   39 (560)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             998665789989678999999999988998899969999


No 47 
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91  E-value=3.1e-09  Score=85.12  Aligned_cols=113  Identities=24%  Similarity=0.407  Sum_probs=72.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7635788988942689999999858998-999980762601246670022112248999998630399999988631488
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
                      .+.|||+|||||-||.=||..++|.|.+ +++++...-. +.+.=.+.+.+            .-|.             
T Consensus         1 ~~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~g-g~~~~~~~ven------------ypg~-------------   54 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTTDVEN------------YPGF-------------   54 (305)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCEEECC------------CCCC-------------
T ss_conf             942288998958899999999987589856999478758-86344333357------------6798-------------


Q ss_pred             HHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             730787855-53467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r   82 VLNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        82 ~ln~skGpA-v~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                             |. ..++   .-    .+.|.+-.+ .++++++..+|.++..... ...|.|..+. +.|+.+|+|||.--
T Consensus        55 -------~~~~~g~---~L----~~~~~~~a~-~~~~~~~~~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~  115 (305)
T COG0492          55 -------PGGILGP---EL----MEQMKEQAE-KFGVEIVEDEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA  115 (305)
T ss_pred             -------CCCCCHH---HH----HHHHHHHHH-HCCEEEEEEEEEEEEECCC-EEEEEECCCE-EEEEEEEECCCCCC
T ss_conf             -------6777508---99----999997776-3470888899899860686-0999947974-98656999617765


No 48 
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.90  E-value=1.1e-08  Score=81.16  Aligned_cols=140  Identities=24%  Similarity=0.341  Sum_probs=75.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998076--2601246670022112248999998630399999988631488
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
                      -+|||+|||||-||-.||+.+|++|.+|+|+|-..  -++-.--|-||=--+....+.+.++..... +..+....+  .
T Consensus         3 ~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~-Gi~~~~~~~--d   79 (462)
T PRK06416          3 FDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERYREARHSEDF-GIKAENVGF--D   79 (462)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCC--C
T ss_conf             7799899998889999999999689939999679978620416705069999999999999877626-812677640--8


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             730787855534678784999999999999708996898001011202588113222035863344543334664
Q gi|254780808|r   82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                      +      ++++.-+-+ -.+.....+...++++ ++++++++.. + .+++.+.......+..+.++.+|||||.
T Consensus        80 ~------~~~~~~~~~-~~~~l~~~~~~~l~~~-gv~~i~G~a~-f-~~~~~v~V~~~~~~~~~~a~~iIIATGs  144 (462)
T PRK06416         80 F------KKVQEWKNG-VVARLTGGVEGLLKKN-KVDIIRGEAK-L-VDPNTVRVKGEDGEQTYTAKNIILATGS  144 (462)
T ss_pred             H------HHHHHHHHH-HHHHHHHHHHHHHHHC-CCEEEEEEEE-E-ECCCEEEEEECCCCEEEEECEEEECCCC
T ss_conf             9------999999999-9999878899999877-9789983899-8-1276045553699669994869999899


No 49 
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89  E-value=7.2e-09  Score=82.55  Aligned_cols=113  Identities=23%  Similarity=0.438  Sum_probs=75.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998076260124667002211224899999863039999998863148873
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL   83 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l   83 (626)
                      ..|||+|||||-||.=||..+||.|++|.+++.+..  |++.-.+.+            +                    
T Consensus       211 ~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~G--Gqv~~t~~I------------e--------------------  256 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG--GQVKDTVGI------------E--------------------  256 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCEECCCE------------E--------------------
T ss_conf             888889989678999999999977997699924877--531303460------------0--------------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             0787855534678784999999999999708996898001-011202588113222035863344543334664310
Q gi|254780808|r   84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      |.   |.+..    +.-..+...|.+-.++. ++++++.+ |..+. ..+....+.+..|..+.+++||+|||.--+
T Consensus       257 Ny---pG~~~----i~G~eL~~~~~~qa~~~-gv~~~~~~~v~~i~-~~~~~~~v~~~~g~~~~aktVIiATGa~~r  324 (515)
T TIGR03140       257 NL---ISVPY----TTGSQLAANLEEHIKQY-PIDLMENQRAKKIE-TEDGLIVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             EC---CCCCC----CCHHHHHHHHHHHHHHC-CCEEEECCEEEEEE-CCCCCEEEEECCCCEEEECEEEECCCCCCC
T ss_conf             44---89877----75799999999999974-96899133699997-279818999879989993979995698735


No 50 
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.89  E-value=5.7e-09  Score=83.27  Aligned_cols=138  Identities=23%  Similarity=0.338  Sum_probs=73.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             763578898894268999999985899899998076---26012466700221122489999986303999999886314
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      +|+|||+|||||-||-.||+.+|++|.+|+|+|-+.   -++.---|-||     |.++.. -+...  ..+..+....-
T Consensus         1 M~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPs-----K~Ll~~-a~~~~--~~~~~~~~~~g   72 (466)
T PRK06115          1 MKSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPS-----KALLHA-SELYE--AASGGEFAHLG   72 (466)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHH-----HHHHHH-HHHHH--HHHCCCCCCCC
T ss_conf             98469899997889999999999789939999679996465204575669-----999999-99999--86344020387


Q ss_pred             HHHHCCCCCCCC-C-CHHHHHHH--HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCCCCC
Q ss_conf             887307878555-3-46787849--999999999997089968980010112025881132220358--63344543334
Q gi|254780808|r   80 FRVLNVKKGPAV-R-GPRTQADR--ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVLT  153 (626)
Q Consensus        80 ~r~ln~skGpAv-~-alraqvDR--~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~viia  153 (626)
                      ..    .+ |.. | .+..+.|+  ...++.+...++ ..++++++++.. +..  ...+.|...+|  ..+.++.+|||
T Consensus        73 ~~----~~-~~~d~~~~~~~~~~~v~~~~~~~~~~~~-~~~v~~i~G~a~-f~~--~~~v~V~~~~g~~~~i~a~~iiIA  143 (466)
T PRK06115         73 IE----VK-PTLNLAQMMKQKDESVTALTKGVEFLFR-KNKVDWIKGWGR-LDG--VGKVVVKAEDGSETQLEAKDIVIA  143 (466)
T ss_pred             EE----EC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEE-EEC--CCCEEEECCCCCEEEEEEEEEEEC
T ss_conf             57----34-6258999999999999999999999986-189479952599-954--994189858997799995689999


Q ss_pred             CCCC
Q ss_conf             6643
Q gi|254780808|r  154 TGTF  157 (626)
Q Consensus       154 tGtf  157 (626)
                      ||.-
T Consensus       144 TGs~  147 (466)
T PRK06115        144 TGSE  147 (466)
T ss_pred             CCCC
T ss_conf             8998


No 51 
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.89  E-value=9.5e-09  Score=81.66  Aligned_cols=137  Identities=22%  Similarity=0.347  Sum_probs=75.3

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87635788988942689999999858998999980762---601246670022112248999998630399999988631
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      |..+|||+|||||-||-.||+.+|+.|.+|+|+|-+..   ++-.--|=||---+....+..+++.+.        ..++
T Consensus         1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~~~~~--------~~Gi   72 (472)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALA--------EHGI   72 (472)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH--------HCCE
T ss_conf             99778789999888999999999978996999963799765612358032299999999999986767--------4577


Q ss_pred             HHHHHCCCCCCCC--CCHHHHHH--HHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCCCC
Q ss_conf             4887307878555--34678784--9999999999997089968980010112025881132220358--6334454333
Q gi|254780808|r   79 QFRVLNVKKGPAV--RGPRTQAD--RELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTVVL  152 (626)
Q Consensus        79 ~~r~ln~skGpAv--~alraqvD--R~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~vii  152 (626)
                      .+      ..|..  .+++...|  ...++..+...++ ..++++++++-. +..++  ...|...++  ..+.++.+||
T Consensus        73 ~~------~~~~~d~~~~~~~~~~~v~~l~~~~~~~~~-~~gV~~i~G~a~-f~~~~--~v~v~~~~g~~~~l~a~~ivI  142 (472)
T PRK06467         73 VF------GEPKIDIDKMRARKEKVVKQLTGGLAGMAK-GRKVTVVNGLGK-FTGGN--TVEVTGEDGKTEVIEFDNAII  142 (472)
T ss_pred             EC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEECCCEE-ECCCC--EEEEECCCCCEEEEEEEEEEE
T ss_conf             25------887427999999999999999889999998-779569715067-54898--036433888648998779999


Q ss_pred             CCCC
Q ss_conf             4664
Q gi|254780808|r  153 TTGT  156 (626)
Q Consensus       153 atGt  156 (626)
                      |||.
T Consensus       143 ATGs  146 (472)
T PRK06467        143 AAGS  146 (472)
T ss_pred             CCCC
T ss_conf             4699


No 52 
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.88  E-value=1.2e-08  Score=81.05  Aligned_cols=147  Identities=23%  Similarity=0.291  Sum_probs=92.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf             98763578898894268999999985899899998076260124667002211224899999863039999998863-14
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG-IQ   79 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~-i~   79 (626)
                      |.+++|||+|||||.+|.=+|++||+.|++|.|+|.++.. .   .+-++ ++..+ =++=++.||= --.+.+.+. ++
T Consensus         1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~-~---d~Ra~-al~~~-s~~~L~~lGl-~~~l~~~~~~~~   73 (386)
T PRK07494          1 MEKEHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPY-A---DLRTT-ALLGP-SIRFLERLGV-WARLAPHAAPLQ   73 (386)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-C---CCCEE-EECHH-HHHHHHHCCC-HHHHHHHCCCCE
T ss_conf             9978886899990689999999998789988999579988-8---88679-98689-9999998898-788875148522


Q ss_pred             -HHHHCCCCCC-----C---------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf             -8873078785-----5---------534678784999999999999708996898001011202588113222035863
Q gi|254780808|r   80 -FRVLNVKKGP-----A---------VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM  144 (626)
Q Consensus        80 -~r~ln~skGp-----A---------v~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~  144 (626)
                       .++.. ..|+     -         ...+.-.+.+........+.+...||++....+++++..++..+ .+.+.+|..
T Consensus        74 ~~~~~d-~~~~~~~~~~~~f~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~  151 (386)
T PRK07494         74 SMRIVD-ATGRLIRAPEVRFRASEIGEDAFGYNIPNWLLNRALEARAAELPNIDRFDDEAESVRPRGDEV-TVTLADGTT  151 (386)
T ss_pred             EEEEEE-CCCCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEE-EEEECCCCE
T ss_conf             699996-898511376410353224776632101269999999999971899799777068999669848-999789969


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             344543334664
Q gi|254780808|r  145 IRCSTVVLTTGT  156 (626)
Q Consensus       145 ~~~~~viiatGt  156 (626)
                      +.++-+|-|-|.
T Consensus       152 i~a~llIgADG~  163 (386)
T PRK07494        152 LSARLVVAADGR  163 (386)
T ss_pred             EEEEEEEEECCC
T ss_conf             998699990588


No 53 
>PRK13748 putative mercuric reductase; Provisional
Probab=98.85  E-value=1.4e-08  Score=80.45  Aligned_cols=136  Identities=24%  Similarity=0.336  Sum_probs=76.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH-HHHH
Q ss_conf             763578898894268999999985899899998076--2601246670022112248999-99863039999998-8631
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVR-EIDALDGLMGRVAD-AAGI   78 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~-Ei~aLgg~m~~~aD-~~~i   78 (626)
                      +..|||+|||+|-||--||..+|++|.+|+|+|-..  -++---=|-||     |-+|.. |+-.   + .+... ..++
T Consensus        96 ~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lGGTClN~GCIPS-----K~Ll~aA~~~~---~-~r~~~~~~Gi  166 (561)
T PRK13748         96 EGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPS-----KIMIRAAHIAH---L-RRESPFDGGI  166 (561)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHH-----HHHHHHHHHHH---H-HHHCCCCCCC
T ss_conf             9987689989588999999999978997999947996886656760448-----99999999999---9-9745014771


Q ss_pred             HHHHHCCCCCCCCC--CHHH----HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC--CCCCCCCC
Q ss_conf             48873078785553--4678----7849999999999997089968980010112025881132220358--63344543
Q gi|254780808|r   79 QFRVLNVKKGPAVR--GPRT----QADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN--SMIRCSTV  150 (626)
Q Consensus        79 ~~r~ln~skGpAv~--alra----qvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g--~~~~~~~v  150 (626)
                      .      ...|.+.  ++.+    .+|+-.. ......|+++|+|++++++.. +.  +...+.|.+.+|  ..+.++.+
T Consensus       167 ~------~~~~~vd~~~~~~~k~~~v~~l~~-~~~~~~l~~~~gV~vi~G~A~-f~--~~~tv~V~~~dg~~~~i~a~~i  236 (561)
T PRK13748        167 A------ATAPTIDRSKLLAQQQARVDELRH-AKYEGILEGNPAITVLHGEAR-FK--DDQTLIVRLNDGGERVVAFDRC  236 (561)
T ss_pred             C------CCCCEECHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEEEEEE-EE--CCCEEEEEECCCCEEEEEECEE
T ss_conf             1------677546799999999999999874-468899743798499984999-95--3988999935896489941869


Q ss_pred             CCCCCCC
Q ss_conf             3346643
Q gi|254780808|r  151 VLTTGTF  157 (626)
Q Consensus       151 iiatGtf  157 (626)
                      |||||.-
T Consensus       237 IIATGS~  243 (561)
T PRK13748        237 LIATGAS  243 (561)
T ss_pred             EECCCCC
T ss_conf             9947887


No 54 
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006   Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other .   Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups.   This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=98.84  E-value=3.5e-09  Score=84.72  Aligned_cols=389  Identities=22%  Similarity=0.288  Sum_probs=205.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC---CCEEEEE--------------------C-CH-----------HH-----------
Q ss_conf             7889889426899999998589---9899998--------------------0-76-----------26-----------
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLG---ASTALIT--------------------H-KT-----------ST-----------   40 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~--------------------~-~~-----------~~-----------   40 (626)
                      ||||||||+||+=||.++|+.|   ++|++++                    . +.           ||           
T Consensus         1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD   80 (636)
T TIGR01812         1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD   80 (636)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf             97888186689999999973577961079995569885201535678999957786432072123041101442132589


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCC---------------------------CCCC
Q ss_conf             012466700221122489999986303999999--88631488730787---------------------------8555
Q gi|254780808|r   41 IGSMSCNPAIGGLGKGHLVREIDALDGLMGRVA--DAAGIQFRVLNVKK---------------------------GPAV   91 (626)
Q Consensus        41 ~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~a--D~~~i~~r~ln~sk---------------------------GpAv   91 (626)
                      -.|+=|+.|-      -.|.||+..|=.--|.-  |.-+|    .|..|                           +||-
T Consensus        81 Ave~~~~~AP------~~v~eLe~wG~PfSR~~kGDRmai----inaqkttiteeDfRDG~IaQR~FGG~~~~~Gg~~a~  150 (636)
T TIGR01812        81 AVEYMCKEAP------KAVLELERWGVPFSRLPKGDRMAI----INAQKTTITEEDFRDGRIAQRPFGGASFDYGGAAAR  150 (636)
T ss_pred             HHHHHHHHCC------HHHHHHHHCCCCCCCCCCCCEEEE----EECCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHH
T ss_conf             9999985151------789999737898567867764777----624542002011558835343788888655662221


Q ss_pred             CCHHHHHHHHHHHH--HHHHHHHCCCCCEEEHH-HHCCCCCC-CC--CEEEEE-----ECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             34678784999999--99999970899689800-10112025-88--113222-----0358633445433346643101
Q gi|254780808|r   92 RGPRTQADRELYRL--AMQREILSQENLDVIQG-EVAGFNTE-KN--IISSIV-----MQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus        92 ~alraqvDR~~fs~--~vt~~l~~~pni~i~~~-eV~~l~~~-~~--~~~~v~-----~~~g~~~~~~~viiatGtfl~g  160 (626)
                      ++- .-.||-.|..  .+=+....+++|++.++ .+.+|..+ ++  .+.||.     +..-..+.||+||+|||-+   
T Consensus       151 RTc-yAADkTGh~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~---  226 (636)
T TIGR01812       151 RTC-YAADKTGHALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGY---  226 (636)
T ss_pred             HHH-HHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCC---
T ss_conf             342-0012113147898999985379942753888877887458986799999998058808999607489830651---


Q ss_pred             HHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3444320233222475-111331000010112005444454410110000134432114787668777435657800000
Q gi|254780808|r  161 VIHIGKLKIPAGRMGD-SPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIE  239 (626)
Q Consensus       161 ~~~~g~~~~~~gr~~~-~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~  239 (626)
                                 ||+.. ..+.+....=                  |+--|.+...-.|-.|     +-|.-+++..-   
T Consensus       227 -----------GR~Y~~~tTNa~~~TG------------------DG~A~AlraG~PqL~D-----MEFvQFHPTGL---  269 (636)
T TIGR01812       227 -----------GRVYKFTTTNAHINTG------------------DGLAMALRAGVPQLKD-----MEFVQFHPTGL---  269 (636)
T ss_pred             -----------HHHHCCCCCCCEEECC------------------CHHHHHHHHCCCCCCC-----CCCEECCCCCC---
T ss_conf             -----------0210304454422354------------------0688888734643168-----44050367455---


Q ss_pred             CCCCCCCCCHHHHHHHCCCC---CCCCCCCCCCCCCC--CCCCCCCCCC-------------------CCCCCCC-CCCE
Q ss_conf             00012320014777640245---75414432356422--2553212335-------------------6764334-5201
Q gi|254780808|r  240 CGITRTNLETHRIIMENIKH---SAIYSGDIKSYGPR--YCPSIEDKIV-------------------RFGERNG-HQIF  294 (626)
Q Consensus       240 ~~~~~t~~~~~~~~~~~~~~---~~~~~g~~~~~gpr--ycPsie~k~~-------------------~~~~~p~-h~Vq  294 (626)
                              ..-.|...+.|+   ..+.+..=.++-.|  |-|.-|.|..                   .++..|. ..|+
T Consensus       270 --------~~sGiL~tEgcRGEGGyL~N~~GeRFM~ryGYAPetP~k~eLApRDvVSRa~~~EireGRGv~~~~~k~~v~  341 (636)
T TIGR01812       270 --------APSGILITEGCRGEGGYLINKEGERFMERYGYAPETPEKMELAPRDVVSRAMVTEIREGRGVGSGPGKDYVY  341 (636)
T ss_pred             --------CCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             --------667717740133276168678753103446888788750004787699999999998448889887887788


Q ss_pred             E--EECCCCCCEEEECCCCCCCCHHHHHH--------HHHH-HHHHHHCCEEEECCHHHHCCC-CHHH-----HHH-HHH
Q ss_conf             3--01578776454347766689889999--------9987-543400100110001211023-5456-----567-765
Q gi|254780808|r  295 L--EPEGLNTDVVYPNGISTALPEEIQHQ--------FIRT-IPGLEKVNIIRPGYAIEYDYI-NPKE-----LFP-TLE  356 (626)
Q Consensus       295 L--rpE~~~~~~~n~vGFqTsL~~~~Q~r--------v~r~-IPGLEnAef~R~Gy~ieyd~~-~P~~-----L~~-tLe  356 (626)
                      |  |.=|.+.       +.++||.=-|.-        |-.. ||       |||-  .||.-= -|+-     ... .=.
T Consensus       342 LDLrHLGee~-------i~~RLP~i~E~A~~f~GVDPv~~pWiP-------VrPt--~HY~MGGI~T~~~G~~~~~D~~~  405 (636)
T TIGR01812       342 LDLRHLGEEK-------IEERLPQIRELAKTFAGVDPVKEPWIP-------VRPT--AHYSMGGIDTNYRGQVIGEDAKN  405 (636)
T ss_pred             EEHHHCCHHH-------HHHCCHHHHHHHHHHCCCCCCCCCCCC-------CCCC--CCCCCCCEEECCCCEEECCCCCC
T ss_conf             7640134788-------852075689999970488830057626-------4564--44118278445842487016788


Q ss_pred             HH-CCCEEEEEEEEECCC----------HHHHHHHHHHHHHHHHHHHCC-CCCC--CC---CCCCCCHHHHHHHHHHCCC
Q ss_conf             40-334156621330433----------466666677899999874203-3456--54---6532107999999886078
Q gi|254780808|r  357 TK-KISGLFLAGQINGTT----------GYEEAAAQGLVAGINSARKSN-KLDC--IC---FSRTDSYIGVMIDDLTSKG  419 (626)
Q Consensus       357 ~k-~~~~LffAGQI~Gte----------GYeEAAAqGl~AGiNa~~~~~-~~~p--~~---l~R~eaYiGVlIDDLitkg  419 (626)
                      .. -++|||-||=-.=|+          ==.|.--=|-+||..++-+++ -..+  +.   ..+...-+=-.+|.|...+
T Consensus       406 ~~~iv~GLfAaGE~ACVSVHGANRLGsNSLle~vVFGr~aG~~~ae~~~~~~~~neL~~~~~~~~~~~~~~~~~~~~~~~  485 (636)
T TIGR01812       406 NDSIVKGLFAAGECACVSVHGANRLGSNSLLELVVFGRIAGEAAAEYLAKTGVDNELAADLEEEEVKKEEALIDLLKEEG  485 (636)
T ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             88621010220102220341213060567999999979999999999860688631133454458999999999730367


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCC
Q ss_conf             774024420001221211578713668887877378838999999999999999999876-336883
Q gi|254780808|r  420 VLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLK-SLVLTS  485 (626)
Q Consensus       420 ~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~~~~~l~-~~~~~p  485 (626)
                      .. =+|.+.=|.|-+..+-..=.-+|              .-+.+++-.++|.+++++.. +..+.-
T Consensus       486 ~~-~~~~a~ir~~l~~~M~~~~gvFR--------------~~~~l~~a~~~i~eL~eR~~~~v~i~D  537 (636)
T TIGR01812       486 NG-GERVAQIREELQETMEANVGVFR--------------TEELLKKAVDEIEELRERRYKNVKIND  537 (636)
T ss_pred             CC-CCCHHHHHHHHHHHHHCCCEEEE--------------CCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             88-73579999999888665857987--------------732278899999998610016456740


No 55 
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.83  E-value=5.3e-08  Score=76.38  Aligned_cols=155  Identities=22%  Similarity=0.273  Sum_probs=86.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-CC-------CCCCCC-C----CCCC-CHHHHHHHHHHHH-H
Q ss_conf             76357889889426899999998589989999807626-01-------246670-0----2211-2248999998630-3
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IG-------SMSCNP-A----IGGL-GKGHLVREIDALD-G   67 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-~a-------el~Cnp-s----~gg~-akg~L~~Ei~aLg-g   67 (626)
                      -...||+|||+|.||.=||+.+|+.|.+|+|+|.-|.. .|       -+.|.. +    ..+. ..-....++-..+ +
T Consensus         2 ~~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~s~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   81 (456)
T PRK08274          2 AAMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG   81 (456)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             97388899998899999999999879909999832777888030553864455368665426889999999999987289


Q ss_pred             -----HHHHHHHHHHHHHHHHCCCCC----CC-CCCHHHHHHH--------HHHHHHHHHHHHCCCCCEEE-HHHHCCCC
Q ss_conf             -----999999886314887307878----55-5346787849--------99999999999708996898-00101120
Q gi|254780808|r   68 -----LMGRVADAAGIQFRVLNVKKG----PA-VRGPRTQADR--------ELYRLAMQREILSQENLDVI-QGEVAGFN  128 (626)
Q Consensus        68 -----~m~~~aD~~~i~~r~ln~skG----pA-v~alraqvDR--------~~fs~~vt~~l~~~pni~i~-~~eV~~l~  128 (626)
                           ++...++.+.-...+|.. .|    |. .+.. -..++        ..+-..+.+.+++. +++|. +-.+++|+
T Consensus        82 ~~d~~l~~~~~~~s~~~i~wl~~-~Gv~f~~~~~~~~-~~~~~~~~~~g~G~~~~~~l~~~~~~~-gv~i~~~t~~~~Li  158 (456)
T PRK08274         82 RTDEALARLLIRESSDCRDWMRK-HGVRFQPPLSGAL-HVARTNAFFMGGGKALVNALYRSAERL-GVEIRYDAPVTALE  158 (456)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEECCEEEEEE
T ss_conf             87699999999723999999997-1961356688864-447983414798799999999999973-99799388889999


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             258811322203586334454333466431013
Q gi|254780808|r  129 TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV  161 (626)
Q Consensus       129 ~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~  161 (626)
                      .+++.++||.... ..+.+++||||||-|-+..
T Consensus       159 ~d~g~V~Gv~~~~-~~i~AkaVVLAtGGf~~N~  190 (456)
T PRK08274        159 LDDGRFVAARAGA-ERIRARAVVLAAGGFEANR  190 (456)
T ss_pred             EECCEEEEEEECE-EEECCCEEEEECCCCCCCH
T ss_conf             9099999999253-8971686999578988899


No 56 
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.82  E-value=9.4e-08  Score=74.62  Aligned_cols=38  Identities=42%  Similarity=0.580  Sum_probs=34.8

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             98763578898894268999999985899899998076
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |-.-+|||||||+|.||.=||+.+|+.|.+|+|+|..+
T Consensus         1 ~~tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~   38 (567)
T PRK12842          1 MNELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEP   38 (567)
T ss_pred             CCCCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             98730596998968899999999998799089997799


No 57 
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.81  E-value=9.4e-08  Score=74.62  Aligned_cols=151  Identities=18%  Similarity=0.267  Sum_probs=83.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-HHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6357889889426899999998589989999807-62601-246670022112248999998630399999988631488
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIG-SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~~~~a-el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
                      |+|||+|||||.+|+=+|+.||+.|++|.++|.+ |..+. ..++..-.-++... =++-++.||- .-.+.+.....++
T Consensus         2 ~~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~~~~~~R~~al~~~-s~~~L~~lG~-~~~i~~~~~~~~~   79 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEASQPMDIRVSAISQN-SVDLLESLGA-WSSIVAMRVCPYK   79 (384)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECHH-HHHHHHHCCC-HHHHHHCCCCCCC
T ss_conf             8189999992499999999999579959999689987666667877056786799-9999998798-6468761478600


Q ss_pred             HHCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             730787855-----------534678784999999999999708996898001-01120258811322203586334454
Q gi|254780808|r   82 VLNVKKGPA-----------VRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCST  149 (626)
Q Consensus        82 ~ln~skGpA-----------v~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~  149 (626)
                      -+.....|.           ...+.--+..........+.+..+||+++..+. |+++.... ....+.+.+|..+.++-
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~~i~~~~~~~v~~~~~~~-~~~~v~l~~g~~i~a~l  158 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLLCPEKLKDLEFSA-EGNRVTLESGAEIEAKW  158 (384)
T ss_pred             EEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECC-CEEEEEECCCCEEEEEE
T ss_conf             25530177644124853438630000343799999999999848991998387788988538-81499978999998547


Q ss_pred             CCCCCCCC
Q ss_conf             33346643
Q gi|254780808|r  150 VVLTTGTF  157 (626)
Q Consensus       150 viiatGtf  157 (626)
                      +|.|-|.-
T Consensus       159 lIgADG~~  166 (384)
T PRK08849        159 VIGADGAN  166 (384)
T ss_pred             EEEEECCC
T ss_conf             99920786


No 58 
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80  E-value=7.2e-08  Score=75.44  Aligned_cols=123  Identities=24%  Similarity=0.390  Sum_probs=70.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             635788988942689999999858998999980762601----2466700221122489999986303999999886314
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a----el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      ++|||+|||||.||.-||..+|+.|.+|+|+|-....+|    .--|=||     |-++..            ++. ...
T Consensus         2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPs-----k~ll~~------------a~~-~~~   63 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPT-----KTLLVA------------AEK-NLS   63 (438)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCC-----HHHHHH------------HHC-CCC
T ss_conf             95587999978899999999997889499994699876855477870401-----578987------------662-799


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC-CCCCCCCCCCCCCCCCC
Q ss_conf             8873078785553467878499999999999970899689800101120258811322203-58633445433346643
Q gi|254780808|r   80 FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        80 ~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-~g~~~~~~~viiatGtf  157 (626)
                      |        +.....+-.+. ..........+ ...++++++++..-+.  + ....|... ....+.++.+|||||.-
T Consensus        64 ~--------~~~~~~k~~~~-~~l~~~~~~~~-~~~gv~~~~g~a~~~~--~-~~v~V~~~~~~~~~~a~~iIIATGs~  129 (438)
T PRK07251         64 F--------EEVMATKNTVT-SRLNAKNYAML-AGTGVDIYDAEAHFVS--N-KVIEVTAGDEKQELTAETIVINTGAV  129 (438)
T ss_pred             H--------HHHHHHHHHHH-HHHHHHHHHHH-HHCCCEEEEEEEEECC--C-CEEEEECCCCEEEEEEEEEEECCCCC
T ss_conf             9--------99999999999-99988999999-7489489997999816--8-48999559972999976898726787


No 59 
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.79  E-value=9.3e-08  Score=74.65  Aligned_cols=150  Identities=21%  Similarity=0.289  Sum_probs=86.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCCCCH------H---HHHHHHHHHHH-----
Q ss_conf             635788988942689999999858998999980762601246670--0221122------4---89999986303-----
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGK------G---HLVREIDALDG-----   67 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg~ak------g---~L~~Ei~aLgg-----   67 (626)
                      -..||+|||+|.||+=||+++|..  +|.|++..+-..   .||-  +-||++.      +   |..--+.+=+|     
T Consensus         8 ~~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~~~---g~ss~~AqGGi~a~~~~~Ds~e~h~~Dtl~aG~gl~d~~   82 (507)
T PRK07512          8 LTGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPLGE---GASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDEA   82 (507)
T ss_pred             CCCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCCCC---CCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             369989999669999999983307--839999058899---962667524514606999999999999999647878899


Q ss_pred             HHHHHHHHHHHHHHHHCC--------CCCC------CCCC----HHHHHHH--HHHHHHHHHHHHCCCCCEEEHH-HHCC
Q ss_conf             999999886314887307--------8785------5534----6787849--9999999999970899689800-1011
Q gi|254780808|r   68 LMGRVADAAGIQFRVLNV--------KKGP------AVRG----PRTQADR--ELYRLAMQREILSQENLDVIQG-EVAG  126 (626)
Q Consensus        68 ~m~~~aD~~~i~~r~ln~--------skGp------Av~a----lraqvDR--~~fs~~vt~~l~~~pni~i~~~-eV~~  126 (626)
                      ++-..++++.--.+.|-.        ..|.      ++++    .+++.|.  ..+-..+.+.+..+++|++... .+++
T Consensus        83 ~v~~l~~~a~~~i~~L~~~Gv~F~r~~~G~~~~~~~ggHs~~R~~~~~gd~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~  162 (507)
T PRK07512         83 VARRIAAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARR  162 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf             99999998999999999809936447887511456655678727874588743699999999998279944999899888


Q ss_pred             CCCCCCCEEEEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf             2025881132220358---6334454333466431
Q gi|254780808|r  127 FNTEKNIISSIVMQDN---SMIRCSTVVLTTGTFL  158 (626)
Q Consensus       127 l~~~~~~~~~v~~~~g---~~~~~~~viiatGtfl  158 (626)
                      |+.+++.+.|+.....   ..+.+++||+|||-+-
T Consensus       163 Ll~~~g~v~Gv~~~~~g~~~~i~A~aVILATGG~g  197 (507)
T PRK07512        163 LLVEDGAVAGVLLATAGGPVVLPARAVVLATGGIG  197 (507)
T ss_pred             EEECCCEEEEEEEECCCCEEEEEECEEEECCCCCC
T ss_conf             77538807899997389889998286998889775


No 60 
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.79  E-value=1.4e-07  Score=73.46  Aligned_cols=37  Identities=32%  Similarity=0.508  Sum_probs=33.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             7635788988942689999999858998999980762
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      ..+|||+|||+|+||.=||+++|..|.+|+|+|..+.
T Consensus         4 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~   40 (552)
T PRK12844          4 DVTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPK   40 (552)
T ss_pred             CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             7720979989678999999999988996899988999


No 61 
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.79  E-value=2.9e-08  Score=78.19  Aligned_cols=155  Identities=25%  Similarity=0.328  Sum_probs=88.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH--HCCCCCCCC-----CCC-CCC------HH-HHHHHHHHHH--
Q ss_conf             635788988942689999999858998999980762--601246670-----022-112------24-8999998630--
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNP-----AIG-GLG------KG-HLVREIDALD--   66 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~--~~ael~Cnp-----s~g-g~a------kg-~L~~Ei~aLg--   66 (626)
                      -+|||+|||||..|+=+||.||++|.+|+|+|-..-  ..|--..+.     +.+ ++.      ++ .+-+|+...-  
T Consensus         2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~~~~~~~l~~~s~~~~~~l~~~~g~   81 (377)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERETGE   81 (377)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             50489999952999999999997899599992899886546676642066764567877899999999999999987497


Q ss_pred             -------HH------------HHHHHHHHHHHHHHHCC------------CCCC-CCCCHH-HHHHHHHHHHHHHHHHHC
Q ss_conf             -------39------------99999886314887307------------8785-553467-878499999999999970
Q gi|254780808|r   67 -------GL------------MGRVADAAGIQFRVLNV------------KKGP-AVRGPR-TQADRELYRLAMQREILS  113 (626)
Q Consensus        67 -------g~------------m~~~aD~~~i~~r~ln~------------skGp-Av~alr-aqvDR~~fs~~vt~~l~~  113 (626)
                             ++            ..+.+.+.++..++|..            +..- |.+.+. .++|=..+.....+....
T Consensus        82 ~~~~~~G~l~~a~~~~~~~~~~~~~~~~~G~~~e~l~~~e~~~~~P~l~~~~~~~g~~~p~~G~v~p~~~~~al~~~a~~  161 (377)
T PRK11259         82 PLFVQTGVLNLGPADSAFLANVARSARQHGLPHEVLDAAEIRRRWPEFRVPDNYIALFEPDSGFLRPELAIKAHLRLARE  161 (377)
T ss_pred             CEEEEECCEEECCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHH
T ss_conf             52875074897387799999999999976998099589999986776578987799995898267499999999999997


Q ss_pred             CCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             89968980-0101120258811322203586334454333466431013
Q gi|254780808|r  114 QENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV  161 (626)
Q Consensus       114 ~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~  161 (626)
                      + ..+++. .+|++|..+++.+. |.|..|. +.|..||+|+|......
T Consensus       162 ~-G~~i~~~~~V~~i~~~~~~v~-V~T~~G~-i~A~~VV~AaGaws~~l  207 (377)
T PRK11259        162 A-GAELLFNEPVTAIEHDDDGVT-VTTADGT-YSAKKLVVSAGTWVKEL  207 (377)
T ss_pred             C-CCCEEECEEEEEEEECCCEEE-EEECCCE-EECCEEEECCCHHHHHH
T ss_conf             4-996581348886787499899-9808947-99797999756517878


No 62 
>PRK12839 hypothetical protein; Provisional
Probab=98.79  E-value=1.1e-07  Score=74.14  Aligned_cols=37  Identities=38%  Similarity=0.600  Sum_probs=35.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8763578898894268999999985899899998076
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+++|||||||+|.||.=||+++|..|.+|+|+|..+
T Consensus         6 ~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~   42 (574)
T PRK12839          6 MKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKAS   42 (574)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             1771578998968999999999998899289996899


No 63 
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=98.77  E-value=2.7e-08  Score=78.51  Aligned_cols=149  Identities=28%  Similarity=0.428  Sum_probs=92.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC--------CCCCCCC----------------------------
Q ss_conf             7889889426899999998589989999807626012--------4667002----------------------------
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS--------MSCNPAI----------------------------   50 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae--------l~Cnps~----------------------------   50 (626)
                      ||+|||||.+|+=+||.||++|.+|+|+|...  +|.        +.+ +.+                            
T Consensus         1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~--~~~gaS~~~~g~i~-~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   77 (309)
T pfam01266         1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGD--LASGASGRNAGLLH-PGLRKERAPLLARLALESRDLWRELIEELGI   77 (309)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEECCCC--CCCCCCHHHHCEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999927999999999997899599994999--88750424026164-5757786189999989999999999875598


Q ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----C----C----CCCCH-HHHHHHHHHHHHHHHH
Q ss_conf             -------2112248999998630399999988631488730787----8----5----55346-7878499999999999
Q gi|254780808|r   51 -------GGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK----G----P----AVRGP-RTQADRELYRLAMQRE  110 (626)
Q Consensus        51 -------gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk----G----p----Av~al-raqvDR~~fs~~vt~~  110 (626)
                             |.+--..-..+++.+-..+ ....+.++.+++|+...    -    |    |++.+ -+++|-..|...+.+.
T Consensus        78 ~~~~~~~g~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~a~~~~~~~~i~p~~~~~~l~~~  156 (309)
T pfam01266        78 DCDFRRTGVLVLARDEAELDALRRLA-AALRALGLPVELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARA  156 (309)
T ss_pred             CCCEEECCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEEECHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHHHHHHH
T ss_conf             75647646899946989999999999-99997399659946888776466567761489997578377512436799999


Q ss_pred             HHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             970899689800-1011202588113222035863344543334664310134
Q gi|254780808|r  111 ILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI  162 (626)
Q Consensus       111 l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~  162 (626)
                      +.+. +.+++.+ +|++|...++.+. |.|..|. +.++.||+|||.......
T Consensus       157 ~~~~-G~~i~~~~~V~~i~~~~~~~~-v~t~~g~-i~a~~VV~a~G~~s~~l~  206 (309)
T pfam01266       157 AEAL-GVEILEGTEVTGLEREGGGVT-VETADGE-IRADKVVNAAGAWSDELL  206 (309)
T ss_pred             HHHC-CCEEECCCEEEEEEEECCEEE-EEECCCE-ECCCEEEECCCHHHHHHH
T ss_conf             9877-969991768999999899999-9989970-858999997774268888


No 64 
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.76  E-value=3e-08  Score=78.14  Aligned_cols=144  Identities=22%  Similarity=0.300  Sum_probs=85.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Q ss_conf             63578898894268999999985899899998076260124667002211224899999863039-9999988631488-
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGL-MGRVADAAGIQFR-   81 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~-m~~~aD~~~i~~r-   81 (626)
                      .+|||+|||||-|||=||+.+|+.|++|+|+|-+..- +-=+|+   |+.--.+-+.++.-.... +....+...+.+- 
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~-G~k~~~---~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~   77 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP-GAKPCC---GGGLSPRALEELIPDFDEEIERKVTGARIYFPG   77 (396)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCC---CCCCCHHHHHHHCCCCHHHHEEEEEEEEEECCC
T ss_conf             4788999897889999999998579929999657889-998767---666787788774555213321332026997157


Q ss_pred             ---HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             ---7307878555346787849999999999997089968980-010112025881132220358633445433346643
Q gi|254780808|r   82 ---VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        82 ---~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf  157 (626)
                         ......+++     ..+||..|-+.+.+.-+.. ..++.. -.|+++..+++.+.++....+.++.++.||.|+|.-
T Consensus        78 ~~~~~~~~~~~~-----y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~AdG~~  151 (396)
T COG0644          78 EKVAIEVPVGEG-----YIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN  151 (396)
T ss_pred             CEEEEECCCCCE-----EEEEHHHHHHHHHHHHHHH-CCEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEECCCCC
T ss_conf             426874488857-----9988899889999999983-9899818788999981781699995686699618999884857


No 65 
>PRK07121 hypothetical protein; Validated
Probab=98.76  E-value=3e-07  Score=71.04  Aligned_cols=159  Identities=19%  Similarity=0.283  Sum_probs=85.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-----CCC--C--CCCCCCC---CC--CHHHHHHHHHHHHH-
Q ss_conf             76357889889426899999998589989999807626-----012--4--6670022---11--22489999986303-
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----IGS--M--SCNPAIG---GL--GKGHLVREIDALDG-   67 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-----~ae--l--~Cnps~g---g~--akg~L~~Ei~aLgg-   67 (626)
                      ..+|||+|||+|.||.=||+.+|+.|.+|+|+|..+..     ++.  +  .+++.+-   |+  -+=.+...+...++ 
T Consensus        18 d~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~sgG~~~~~~~t~~q~~~g~~Ds~e~~~~~~~~~~~~   97 (491)
T PRK07121         18 DDEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGD   97 (491)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             68769899896799999999999889928999548999950888377726079999999738999999999999997089


Q ss_pred             -----HHHHHHHHHHHHHHHHCCC---------CCCC----------------CC--------CHH---HH--HH---HH
Q ss_conf             -----9999998863148873078---------7855----------------53--------467---87--84---99
Q gi|254780808|r   68 -----LMGRVADAAGIQFRVLNVK---------KGPA----------------VR--------GPR---TQ--AD---RE  101 (626)
Q Consensus        68 -----~m~~~aD~~~i~~r~ln~s---------kGpA----------------v~--------alr---aq--vD---R~  101 (626)
                           ++-..++.+.--..+|..-         -+++                +|        ++|   .+  -|   -.
T Consensus        98 ~~d~~l~~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~pr~h~~~~~g~~~~g~  177 (491)
T PRK07121         98 GVDEEKIRRYCEGSVEHFDWLEGLGVPFERSYFPEKTSYPPNDEGLYYSGNEKVWPFAEHAKPAPRGHRVQGPGDTGGGA  177 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
T ss_conf             99999999999722999999997499745565776553567775420258522332101357667665321478776499


Q ss_pred             HHHHHHHHHHHCCCCCEEE-HHHHCCCCCC-CCCEEEEEECC-C--CCCCC-CCCCCCCCCCCHHHH
Q ss_conf             9999999999708996898-0010112025-88113222035-8--63344-543334664310134
Q gi|254780808|r  102 LYRLAMQREILSQENLDVI-QGEVAGFNTE-KNIISSIVMQD-N--SMIRC-STVVLTTGTFLRGVI  162 (626)
Q Consensus       102 ~fs~~vt~~l~~~pni~i~-~~eV~~l~~~-~~~~~~v~~~~-g--~~~~~-~~viiatGtfl~g~~  162 (626)
                      .+...+.+.++.. ++++. +-.+++|+.+ +++|+||.... +  ..+.+ ++||||||-|-+..-
T Consensus       178 ~l~~~l~~~~~~~-gv~i~~~t~~~~Li~d~~G~V~Gv~~~~~~~~~~i~A~k~VILAtGGf~~n~~  243 (491)
T PRK07121        178 MLMDPLAKRAAAL-GVQIRYETRATRLIVDGDGRVVGVRARRFGETGAIRARKGVVLAAGGFAMNRD  243 (491)
T ss_pred             HHHHHHHHHHHHC-CCEEEECCEEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEECCCCCCCCHH
T ss_conf             9999999999857-98799677999999979998899999978916999814727984699687699


No 66 
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.75  E-value=1.3e-07  Score=73.54  Aligned_cols=145  Identities=17%  Similarity=0.206  Sum_probs=96.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHH----------
Q ss_conf             6357889889426899999998589989999807626012466700221122489999986303--9999----------
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDG--LMGR----------   71 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg--~m~~----------   71 (626)
                      +.+||+|||||.||.=+|..+++.|++|.|+|..+..+.+-.   .-..+.. .-++=++.||=  -+..          
T Consensus         1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~---r~~~l~~-~~~~~L~~lG~~~~i~~~~~~~~~~~~   76 (387)
T COG0654           1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSP-NALRALERLGLWDRLEALGVPPLHVMV   76 (387)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---EEEEECH-HHHHHHHHCCCHHHHHHCCCCCEEEEE
T ss_conf             985499999789999999999828996899907761135575---5999898-999999984990777615788603799


Q ss_pred             HHHH--HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEEC-CCCCCCC
Q ss_conf             9988--6314887307878555346787849999999999997089968980-0101120258811322203-5863344
Q gi|254780808|r   72 VADA--AGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQ-DNSMIRC  147 (626)
Q Consensus        72 ~aD~--~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~-~g~~~~~  147 (626)
                      +.+.  ..++|.....+-    +.+...+-+..+.....+.+.+.||+++.. .+|+++..+++.+. +.+. +|..+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a  151 (387)
T COG0654          77 VDDGGRRLLIFDAAELGR----GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDA  151 (387)
T ss_pred             EECCCCEEEEECHHHCCC----CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEE-EEEECCCEEEEC
T ss_conf             965996389815221687----762799888999999999987189829995777999885397379-999039919975


Q ss_pred             CCCCCCCCCC
Q ss_conf             5433346643
Q gi|254780808|r  148 STVVLTTGTF  157 (626)
Q Consensus       148 ~~viiatGtf  157 (626)
                      +-+|-|-|-.
T Consensus       152 ~llVgADG~~  161 (387)
T COG0654         152 DLLVGADGAN  161 (387)
T ss_pred             CEEEECCCCC
T ss_conf             9999889987


No 67 
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.74  E-value=5.7e-08  Score=76.18  Aligned_cols=137  Identities=20%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             578898894268999999985899899998076--260124667002211224899999863039999998863148873
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL   83 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l   83 (626)
                      |||+|||||.||-.||..+|+.|.+|+|+|-..  -++----|-||---+....+...+..        +...++++   
T Consensus         2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~GGtC~n~GCiPsK~Li~~a~~~~~~~~--------~~~~G~~~---   70 (467)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGVGGAAVLTDCVPSKTLIASAEVRTELRR--------AADLGVRF---   70 (467)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHH--------HHHCCEEC---
T ss_conf             8199987488999999999978795999967997846767783667999999999999976--------35258044---


Q ss_pred             CCCCC-CCC--CCHH--HHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCC---CCCEEEEEEC--CCCCCCCCCCCCC
Q ss_conf             07878-555--3467--87849999999999997089968980010112025---8811322203--5863344543334
Q gi|254780808|r   84 NVKKG-PAV--RGPR--TQADRELYRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQ--DNSMIRCSTVVLT  153 (626)
Q Consensus        84 n~skG-pAv--~alr--aqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~---~~~~~~v~~~--~g~~~~~~~viia  153 (626)
                        ..+ +.+  ..+.  .+--...++..+...+++ .++++++++..=+...   ....+.|.+.  .+..+.++.+|||
T Consensus        71 --~~~~~~~d~~~~~~r~~~~~~~~~~~~~~~l~~-~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g~~~~i~a~~iIIA  147 (467)
T PRK07845         71 --DLEDAKVDLPQVNARVKRLARAQSADIRAQLER-AGVRVIAGRGRLDDDTPGLGPHRVKVTTADGTEEELEADVVLIA  147 (467)
T ss_pred             --CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECEEEEC
T ss_conf             --787555069999999999999866669999875-79689973899920665677877999935897589992969995


Q ss_pred             CCC
Q ss_conf             664
Q gi|254780808|r  154 TGT  156 (626)
Q Consensus       154 tGt  156 (626)
                      ||.
T Consensus       148 TGs  150 (467)
T PRK07845        148 TGA  150 (467)
T ss_pred             CCC
T ss_conf             899


No 68 
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.74  E-value=1e-08  Score=81.44  Aligned_cols=144  Identities=18%  Similarity=0.307  Sum_probs=85.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC---------HHHHHHHHHHHHH-----H
Q ss_conf             578898894268999999985899899998076260124667002---2112---------2489999986303-----9
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG---------KGHLVREIDALDG-----L   68 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a---------kg~L~~Ei~aLgg-----~   68 (626)
                      .||+|||+|.||+=||+.+++.|.+|+|++-.+.      ++||.   ||++         .-|..--+.+=+|     +
T Consensus         2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~------~~~s~~A~gGi~~~~~~~Ds~e~h~~Dt~~~G~gl~d~~l   75 (464)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSK------DSNSYLAQAGIAFPLLEGDSIRAHVLDTIRAGKYINDEEV   75 (464)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC------CCCHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf             8799989769999999999974996999958999------9514776112064028999999999999995589888999


Q ss_pred             HHHHHHHHHHHHHHHCC---------CCCCCCCC-HHHH--HHHH--HHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCE
Q ss_conf             99999886314887307---------87855534-6787--8499--999999999970899689800101120258811
Q gi|254780808|r   69 MGRVADAAGIQFRVLNV---------KKGPAVRG-PRTQ--ADRE--LYRLAMQREILSQENLDVIQGEVAGFNTEKNII  134 (626)
Q Consensus        69 m~~~aD~~~i~~r~ln~---------skGpAv~a-lraq--vDR~--~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~  134 (626)
                      +-..++.+.--.+.|..         ..|  +++ +|.-  -|+.  .+...+.+....+ ++++++..+++|..+++.+
T Consensus        76 v~~l~~~a~~~i~~L~~~Gv~f~~~~~~G--Ghs~~R~~~~~~~tG~~i~~~L~~~~~~~-~v~~~~~~~~~l~~~dg~v  152 (464)
T PRK08401         76 VWNVISKSTEAYDFLTSLGVEFTGNELEG--GHSFPRVFTIKNETGKHLIPILEKHAREL-GVNFIRGFAEELAIKNGKA  152 (464)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCEEEHHHHHHHEEECCEE
T ss_conf             99999999999999997699887788789--74332026736765899999999999973-9857867657570228989


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             3222035863344543334664310
Q gi|254780808|r  135 SSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       135 ~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      .|+.. .+..+.+++||+|||-+-.
T Consensus       153 ~Gv~~-~ge~i~~~aVIlATGG~g~  176 (464)
T PRK08401        153 YGVFL-NGELLKFDAVIIASGGFSG  176 (464)
T ss_pred             EEEEE-CCEEEEECEEEECCCCCCC
T ss_conf             99998-8889885659989998653


No 69 
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.73  E-value=2.2e-07  Score=72.00  Aligned_cols=35  Identities=43%  Similarity=0.529  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             63578898894268999999985899899998076
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      .+|||+|||+|+||.=||+.+|+.|.+|+|+|...
T Consensus        13 ~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~   47 (576)
T PRK12843         13 ADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTE   47 (576)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             88286998968899999999998899489997979


No 70 
>KOG1298 consensus
Probab=98.73  E-value=9.6e-09  Score=81.64  Aligned_cols=150  Identities=22%  Similarity=0.346  Sum_probs=99.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---HHHC-CCCCCCCCCCCC------CHHHHHHHHHHH--HHH-H
Q ss_conf             76357889889426899999998589989999807---6260-124667002211------224899999863--039-9
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK---TSTI-GSMSCNPAIGGL------GKGHLVREIDAL--DGL-M   69 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~---~~~~-ael~Cnps~gg~------akg~L~~Ei~aL--gg~-m   69 (626)
                      ...+||||||||-|||--|+++||-|-+|..+|-+   ||+| ||+--   =||.      |-..-+..|||-  -|. +
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQ---PGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i  119 (509)
T KOG1298          43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQ---PGGYLALSKLGLEDCVEGIDAQRVTGYAI  119 (509)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC---CCHHHHHHHHCHHHHHHCCCCEEEEEEEE
T ss_conf             875447998886227899999850785799996345561678877608---50668998708787763202237522699


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC----CCC
Q ss_conf             9999886314887307878555346787849999999999997089968980010112025881132220358----633
Q gi|254780808|r   70 GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN----SMI  145 (626)
Q Consensus        70 ~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g----~~~  145 (626)
                      -+-..++.+.|-.=|-.--|+|++.    ---.|-+.++++..+.||+++.|+.|.+|+.+++.+.||.....    .++
T Consensus       120 fk~gk~v~~pyP~~~f~~d~~GrsF----hnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~  195 (509)
T KOG1298         120 FKDGKEVDLPYPLKNFPSDPSGRSF----HNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEA  195 (509)
T ss_pred             EECCCEEECCCCCCCCCCCCCCCEE----ECCHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEEECCCCCEEEE
T ss_conf             8479355335777678887432012----236999999998724897088610278787316859758986278855787


Q ss_pred             CCCCCCCCCCCCCH
Q ss_conf             44543334664310
Q gi|254780808|r  146 RCSTVVLTTGTFLR  159 (626)
Q Consensus       146 ~~~~viiatGtfl~  159 (626)
                      .|.-+|++-|-|.+
T Consensus       196 ~ApLTvVCDGcfSn  209 (509)
T KOG1298         196 FAPLTVVCDGCFSN  209 (509)
T ss_pred             ECCEEEEECCHHHH
T ss_conf             35558994125688


No 71 
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.72  E-value=1.9e-07  Score=72.43  Aligned_cols=169  Identities=24%  Similarity=0.355  Sum_probs=98.4

Q ss_pred             CCCCC---CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCCCCH---------HHHHHHHHHHHH
Q ss_conf             87635---788988942689999999858998999980762601246670--0221122---------489999986303
Q gi|254780808|r    2 INRSY---DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGGLGK---------GHLVREIDALDG   67 (626)
Q Consensus         2 ~~~~~---dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg~ak---------g~L~~Ei~aLgg   67 (626)
                      |++.+   ||+|||.|+||+-||+.+++. .+|.+++-.+-.  +  ||-  |=||+|.         .|+---+.|=.|
T Consensus         1 m~~~~~~~dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~--~--~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~g   75 (518)
T COG0029           1 MNTDFEHPDVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG--E--SSSYWAQGGIAAALSEDDSPELHVADTLAAGAG   75 (518)
T ss_pred             CCCCCCCCCEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCC--C--CCCHHHCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             96436788589988759999999737777-847999577788--7--623654375576617999878888889985477


Q ss_pred             HHH-----HHHH--HHHHHHHHH-C------CC-CC------CCCCCHH----H--HHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             999-----9998--863148873-0------78-78------5553467----8--784999999999999708996898
Q gi|254780808|r   68 LMG-----RVAD--AAGIQFRVL-N------VK-KG------PAVRGPR----T--QADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        68 ~m~-----~~aD--~~~i~~r~l-n------~s-kG------pAv~alr----a--qvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                      ++-     .++.  ..+||  .| +      ++ .|      -++++-|    |  +.-|.. -....+.+.+||||+++
T Consensus        76 lcD~~aV~~iv~~~~~ai~--~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I-~~~L~~~v~~~p~I~v~  152 (518)
T COG0029          76 LCDEEAVEFIVSEAPEAIE--WLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEI-MTALLKKVRNRPNITVL  152 (518)
T ss_pred             CCCHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHH-HHHHHHHHHCCCCCEEE
T ss_conf             7869999999986899999--99973987767888745443101357755788568760899-99999998448995898


Q ss_pred             HH-HHCCCCCCCC-CEEEEEECCC----CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             00-1011202588-1132220358----6334454333466431013444320233222475111331000010112005
Q gi|254780808|r  121 QG-EVAGFNTEKN-IISSIVMQDN----SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTG  194 (626)
Q Consensus       121 ~~-eV~~l~~~~~-~~~~v~~~~g----~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~  194 (626)
                      ++ ++.+|..+++ .+.|+.+...    ..+.++.||||||-+-.                                  -
T Consensus       153 e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~----------------------------------l  198 (518)
T COG0029         153 EGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG----------------------------------L  198 (518)
T ss_pred             ECCHHHHHHHCCCCEEEEEEEECCCCEEEEEECCEEEEECCCCCC----------------------------------C
T ss_conf             662236660247834767999648981799726848992488763----------------------------------1


Q ss_pred             CCCCCCCCHHHHCHHHHH
Q ss_conf             444454410110000134
Q gi|254780808|r  195 RLKTGTPARLDGKTIIWD  212 (626)
Q Consensus       195 r~ktgtppri~~~sidf~  212 (626)
                      +..|-+|.-..++-|...
T Consensus       199 y~~TTNp~~~~GdGIamA  216 (518)
T COG0029         199 YAYTTNPKGSTGDGIAMA  216 (518)
T ss_pred             CCCCCCCCCCCCCHHHHH
T ss_conf             246679866664199999


No 72 
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72  E-value=2.2e-07  Score=71.97  Aligned_cols=37  Identities=35%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             7635788988942689999999858998999980762
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      +.+|||||||+|+||.=||..+|+.|.+|+|+|..+.
T Consensus         8 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~   44 (579)
T PRK06134          8 DLECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPV   44 (579)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             5771869989678999999999987994899979998


No 73 
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=98.72  E-value=2.2e-07  Score=71.98  Aligned_cols=154  Identities=23%  Similarity=0.260  Sum_probs=81.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC----CCCCC-------CHHHHHHHHHHHHH------HH
Q ss_conf             788988942689999999858998999980762601246670----02211-------22489999986303------99
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP----AIGGL-------GKGHLVREIDALDG------LM   69 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp----s~gg~-------akg~L~~Ei~aLgg------~m   69 (626)
                      ||+|||+|+||.-||..+|+.|.+|+|+|..+..=+-..|+-    +.+..       -.-....++...++      ++
T Consensus         1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~   80 (401)
T pfam00890         1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHPYV   80 (401)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             98999886999999999997899489997899999768884523100488435157999999999999965887889999


Q ss_pred             HHHHHHHHHHHHHHCC---------CCCCCCC----CH----H----H-------HHHHHHHHHHHHHHHHCCCCCEEE-
Q ss_conf             9999886314887307---------8785553----46----7----8-------784999999999999708996898-
Q gi|254780808|r   70 GRVADAAGIQFRVLNV---------KKGPAVR----GP----R----T-------QADRELYRLAMQREILSQENLDVI-  120 (626)
Q Consensus        70 ~~~aD~~~i~~r~ln~---------skGpAv~----al----r----a-------qvDR~~fs~~vt~~l~~~pni~i~-  120 (626)
                      -..++.+.=...+|..         ..++..+    ..    +    .       ..+-...-..+.+.++.+ .+++. 
T Consensus        81 ~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-gv~i~~  159 (401)
T pfam00890        81 EAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATWRTPHDVADRRRGTLGTGHALLARLLEGALKR-GIDFQP  159 (401)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEE
T ss_conf             9999867999999998399777567787111335666666502103545445567888999999999999976-998993


Q ss_pred             HHHHCCCCCCCCCEEEEEECCC---C--CCCCC-CCCCCCCCCCHHH
Q ss_conf             0010112025881132220358---6--33445-4333466431013
Q gi|254780808|r  121 QGEVAGFNTEKNIISSIVMQDN---S--MIRCS-TVVLTTGTFLRGV  161 (626)
Q Consensus       121 ~~eV~~l~~~~~~~~~v~~~~g---~--~~~~~-~viiatGtfl~g~  161 (626)
                      +-++++|+.+++.++||.....   .  .+.++ +||+|||-|-...
T Consensus       160 ~t~~~~Li~d~g~V~Gv~~~~~~~g~~~~i~A~kaVIlAtGGf~~n~  206 (401)
T pfam00890       160 RHPADDLIVEDGRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRNA  206 (401)
T ss_pred             CCEEEEEEEECCEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHH
T ss_conf             86961569828858999999678980999995106799668813448


No 74 
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777    This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=98.71  E-value=4e-08  Score=77.28  Aligned_cols=146  Identities=18%  Similarity=0.215  Sum_probs=95.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-HHHCCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHHHHH
Q ss_conf             57889889426899999998589989999807-62601246670022112248999998630-----------3999999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TSTIGSMSCNPAIGGLGKGHLVREIDALD-----------GLMGRVA   73 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~~~~ael~Cnps~gg~akg~L~~Ei~aLg-----------g~m~~~a   73 (626)
                      |||||||||=|||=||+.+|+.|.+|+|+|-. .-+.....|-=.|..-    ...++...+           ..+..-.
T Consensus         1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~----~~~~~~~~~~d~~~L~~~P~~~~~~~~   76 (343)
T TIGR02032         1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPR----VLEELVLPGPDEYALKDIPKELIVNEV   76 (343)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCH----HHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             9389982774689999999956973889850450798860057766700----131136788886130147743454200


Q ss_pred             H----HHHHHH---HHHCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC--
Q ss_conf             8----863148---873078785----553467878499999999999970899689800101120258811322203--
Q gi|254780808|r   74 D----AAGIQF---RVLNVKKGP----AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ--  140 (626)
Q Consensus        74 D----~~~i~~---r~ln~skGp----Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~--  140 (626)
                      .    .+.+..   +.++..+ +    ...+. + +||+.|=+.+-+.-..+---.....+|++.+..+...+.+.+.  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-v-~~R~~fD~~L~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~dd  153 (343)
T TIGR02032        77 RTLFNGARIISPNGDKVEIPI-EELAFTEEAY-V-IDRDAFDEFLAERAQEAGAELRLGTTVLDVEIEDKVVVEVRGGDD  153 (343)
T ss_pred             HHEECCCEEEECCCCEEEECC-HHHCCCCEEE-E-EECHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCC
T ss_conf             110014338807863221022-2112474378-9-852674189999997578067526376112761836899726867


Q ss_pred             -CCCCCCCCCCCCCCCCCC
Q ss_conf             -586334454333466431
Q gi|254780808|r  141 -DNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus       141 -~g~~~~~~~viiatGtfl  158 (626)
                       ...++.|+.||.|.|.-.
T Consensus       154 ~~~~~~~a~~vigADG~~S  172 (343)
T TIGR02032       154 ESKGEVTAKIVIGADGARS  172 (343)
T ss_pred             CCCCEEECCEEEECCCCCC
T ss_conf             5660462558997168878


No 75 
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281   Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=98.70  E-value=3.7e-08  Score=77.46  Aligned_cols=397  Identities=23%  Similarity=0.236  Sum_probs=212.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE----------------------CCH---------HHC-----------
Q ss_conf             63578898894268999999985899899998----------------------076---------260-----------
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT----------------------HKT---------STI-----------   41 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~----------------------~~~---------~~~-----------   41 (626)
                      .+|||||||||=||--||+++|+.|++|+.+|                      |.|         ||+           
T Consensus         1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA   80 (615)
T TIGR01816         1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA   80 (615)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             94227988687568999998632792388983136886411223445788851778798863640310005652124689


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHHCCCCC-CCCCCHHHHHHHH-------HHHHHH
Q ss_conf             12466700221122489999986303-----999999886-314887307878-5553467878499-------999999
Q gi|254780808|r   42 GSMSCNPAIGGLGKGHLVREIDALDG-----LMGRVADAA-GIQFRVLNVKKG-PAVRGPRTQADRE-------LYRLAM  107 (626)
Q Consensus        42 ael~Cnps~gg~akg~L~~Ei~aLgg-----~m~~~aD~~-~i~~r~ln~skG-pAv~alraqvDR~-------~fs~~v  107 (626)
                      .|.-|..++-      -|-||.-+|=     .-||+.... +=|  ...-.|| +|-++= |-.||-       +|.+.+
T Consensus        81 iE~Mc~~ape------AV~ELEhmG~PFsRT~~GkIyQR~FGG~--t~dfGK~g~v~R~C-~aADRTGH~~LhTLYQ~nv  151 (615)
T TIGR01816        81 IEYMCKEAPE------AVLELEHMGMPFSRTEEGKIYQRPFGGH--TRDFGKGGAVERAC-AAADRTGHAILHTLYQQNV  151 (615)
T ss_pred             HHHHHHHHHH------HHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHH-HHCCCHHHHHHHHHHHHHH
T ss_conf             9886231357------7876652777978888983320778697--52115633232420-0014202579999876664


Q ss_pred             HHHHHCCCCCEEEHHHHCCCCCC-CCC----EEEEE-----ECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             99997089968980010112025-881----13222-----035863344543334664310134443202332224751
Q gi|254780808|r  108 QREILSQENLDVIQGEVAGFNTE-KNI----ISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDS  177 (626)
Q Consensus       108 t~~l~~~pni~i~~~eV~~l~~~-~~~----~~~v~-----~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~  177 (626)
                      +     |.--.+++=-+.||+.+ ++.    +.||.     |..--.+.||+||+|||-              .||+...
T Consensus       152 k-----~~t~FF~E~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG--------------~GR~Y~s  212 (615)
T TIGR01816       152 K-----ADTSFFNEFYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGG--------------YGRIYKS  212 (615)
T ss_pred             H-----CCCCEEEHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECC--------------CCHHHHH
T ss_conf             3-----18744750221104652578958879988987605888889954107897378--------------6405676


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHC
Q ss_conf             1133100001011200544445441011000013443211478766877743565780-000000012320014777640
Q gi|254780808|r  178 PSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITN-RQIECGITRTNLETHRIIMEN  256 (626)
Q Consensus       178 ~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~-~q~~~~~~~t~~~~~~~~~~~  256 (626)
                      .+.++...=.-                  -+|-+-+      -=+..++-|+.+++.- --.=|-+||-.       |  
T Consensus       213 ttnA~t~TGDG------------------~gi~~Ra------GlPlqDmEF~QFHPTGiagaG~LiTEG~-------R--  259 (615)
T TIGR01816       213 TTNAHTLTGDG------------------VGIVLRA------GLPLQDMEFWQFHPTGIAGAGVLITEGV-------R--  259 (615)
T ss_pred             HHHHHHHHHHH------------------HHHHHHC------CCCCCCCCCCCCCHHHHHCCCEEEEECC-------C--
T ss_conf             64456552136------------------8888726------8871132231237033410872675012-------1--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----EEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             2457541443235642225532123356764334520----130157877645434776668988999999875434001
Q gi|254780808|r  257 IKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQI----FLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKV  332 (626)
Q Consensus       257 ~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~V----qLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnA  332 (626)
                      .+-..+.++.=.++.-||-|.+-|---|- ==-++.+    -=|==|.+.+-+||.  =++|+.   ..+-+.+||--+-
T Consensus       260 GEGG~L~Na~GERFMERYAP~~KDLAsRD-vVaRsM~~Ei~EGRGvG~~KDhV~l~--l~HLg~---E~l~~kLPgI~E~  333 (615)
T TIGR01816       260 GEGGILLNANGERFMERYAPTAKDLASRD-VVARSMTLEIREGRGVGPNKDHVYLK--LDHLGE---EVLEEKLPGITEL  333 (615)
T ss_pred             CCCCEEECCCCCCCHHCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCEEEEE--ECCCCH---HHHHHHCCCHHHH
T ss_conf             47755246887510200167510036863-64662588764178969675889886--134885---7886528775489


Q ss_pred             CEEEECCHHHHCCCC--HH----------H-----HH--HHHHHHCCCEEEEEEEEECCCHHHHHHHH------------
Q ss_conf             001100012110235--45----------6-----56--77654033415662133043346666667------------
Q gi|254780808|r  333 NIIRPGYAIEYDYIN--PK----------E-----LF--PTLETKKISGLFLAGQINGTTGYEEAAAQ------------  381 (626)
Q Consensus       333 ef~R~Gy~ieyd~~~--P~----------~-----L~--~tLe~k~~~~LffAGQI~GteGYeEAAAq------------  381 (626)
                      =..=.|+-+=-|-++  ||          -     |.  -.=+..-++|||-||        |-||++            
T Consensus       334 a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~G--------E~ACvSVHGANRLGtNSL  405 (615)
T TIGR01816       334 ARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAG--------EAACVSVHGANRLGTNSL  405 (615)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH--------HHHHHEECCCCCCCHHHH
T ss_conf             998638885107868988634157673215643488642478986102376642--------452000025320211245


Q ss_pred             ------HHHHHHHHHHHCC-CCCC-CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH-HHHHH
Q ss_conf             ------7899999874203-3456-5465321079999998860787740244200012212115787136688-87877
Q gi|254780808|r  382 ------GLVAGINSARKSN-KLDC-ICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLT-PIGMK  452 (626)
Q Consensus       382 ------Gl~AGiNa~~~~~-~~~p-~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt-~~g~~  452 (626)
                            |==||+.++-.++ +.+. =.++-.++-+=--+|||-...=.|                 .=||+|+. ....+
T Consensus       406 LDLVVFGR~ag~~~~~~~ke~~~~~~~~~n~~e~~~~~~~~l~~~~g~~-----------------~va~lR~~LQ~smq  468 (615)
T TIGR01816       406 LDLVVFGRAAGLSAAEYIKEGSDFKPLPENAEEESVKRLDDLREATGNE-----------------RVADLRRELQRSMQ  468 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-----------------HHHHHHHHHHHHHH
T ss_conf             5788988999999999713777877879770889999987664115870-----------------27899999888886


Q ss_pred             H--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHCC
Q ss_conf             3--788389999999999999999998763368832--67662010
Q gi|254780808|r  453 L--GCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSK--NLSSTSIS  494 (626)
Q Consensus       453 ~--GLv~~~r~~~~~~k~~~~~~~~~~l~~~~~~p~--~~~~~~~~  494 (626)
                      .  |+-  ..-+.+++-..+|.+++++++++++.-+  .||...+.
T Consensus       469 ~~~gVF--Rt~~~l~~gv~~i~~l~~R~k~~~i~Dks~~~Nt~lvE  512 (615)
T TIGR01816       469 NHAGVF--RTGELLQKGVGEISELKERYKNVKINDKSKVWNTDLVE  512 (615)
T ss_pred             HCEEEE--ECHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHH
T ss_conf             150564--54678999999999987556414410056200568899


No 76 
>PRK07608 hypothetical protein; Provisional
Probab=98.70  E-value=2e-07  Score=72.23  Aligned_cols=151  Identities=21%  Similarity=0.289  Sum_probs=90.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076260--12466700221122489999986303999999886314
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI--GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~--ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      .|.+|||+|||||.+|.=+|+.||+.|++|.++|.++..-  +...+.+=.-++..+ -++=++.||=. ... +...++
T Consensus         2 ~~m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~-s~~~L~~lGv~-~~l-~~~~~~   78 (389)
T PRK07608          2 YHMKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPADDAWDSRVYAISPS-SQAFLERLGVW-QAL-DAARLA   78 (389)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECHH-HHHHHHHCCCH-HHH-HHHCCC
T ss_conf             989998899990689999999998379988999589987666666767517898899-99999987985-455-543264


Q ss_pred             ----HHHHCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             ----887307878--------55534678784999999999999708996898001011202588113222035863344
Q gi|254780808|r   80 ----FRVLNVKKG--------PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRC  147 (626)
Q Consensus        80 ----~r~ln~skG--------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~  147 (626)
                          .++-....|        .....+..-+.+........+.+...+++++...+++++..+++.+ .+.+.+|..+.+
T Consensus        79 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~v-~v~~~~g~~i~a  157 (389)
T PRK07608         79 PVYDMRVYGDAHGRLHFSAYQAAVPQLAWIVESSLIERALDAALRFQGNLTWFDARAQGLDVTPDAA-TLTLSDGQVLEA  157 (389)
T ss_pred             EEEEEEEECCCCCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCE-EEEECCCCEEEE
T ss_conf             0678999647785463463335898414441079999999999861898699887888999729917-999889989996


Q ss_pred             CCCCCCCCC
Q ss_conf             543334664
Q gi|254780808|r  148 STVVLTTGT  156 (626)
Q Consensus       148 ~~viiatGt  156 (626)
                      +-+|-|-|.
T Consensus       158 ~llVgADG~  166 (389)
T PRK07608        158 DLVVGADGA  166 (389)
T ss_pred             EEEEEECCC
T ss_conf             589996699


No 77 
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.69  E-value=4.9e-07  Score=69.48  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=83.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-C--------CCCCCC-CCCC---CC--CHHHHHHH-HHHHH--
Q ss_conf             357889889426899999998589989999807626-0--------124667-0022---11--22489999-98630--
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-I--------GSMSCN-PAIG---GL--GKGHLVRE-IDALD--   66 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-~--------ael~Cn-ps~g---g~--akg~L~~E-i~aLg--   66 (626)
                      +|||+|||+|.||-=||+++|+.|.+|+|+|..+.. +        +.|.+. +.+-   |+  -+-+..++ |..-+  
T Consensus         2 e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s~G~~~~~~t~~Qk~~Gi~DS~e~~~~d~~~~a~~~   81 (549)
T PRK12834          2 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSFGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGFD   81 (549)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             99989989678999999999987992799966888898846776177876689999998489999999999999752789


Q ss_pred             -------HHHHHH-HHH-HHHHHHHHCC------------------CC--CCCCCCHHHH-------HHHHHHHHHHHHH
Q ss_conf             -------399999-988-6314887307------------------87--8555346787-------8499999999999
Q gi|254780808|r   67 -------GLMGRV-ADA-AGIQFRVLNV------------------KK--GPAVRGPRTQ-------ADRELYRLAMQRE  110 (626)
Q Consensus        67 -------g~m~~~-aD~-~~i~~r~ln~------------------sk--GpAv~alraq-------vDR~~fs~~vt~~  110 (626)
                             -...+. .|. ++-.+.+|..                  ..  |..+  +|..       ---..|.+.+.+.
T Consensus        82 ~~~d~~~~~~~~~~~~~~~~e~~~wL~~~Gv~f~~~~~~~~~~~~~~~g~g~s~--pr~h~~~~~G~~~~~~~~~~~~~~  159 (549)
T PRK12834         82 RPEDHWPRQWAEAYVEFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSV--PRFHITWGTGPGVVEPFVRRVREA  159 (549)
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             851367899999998751111789999669862103441124775567888877--773556787716999999999987


Q ss_pred             HHCCCCCEEE-HHHHCCCCCCCCCEEEEEEC---C---------------CCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9708996898-00101120258811322203---5---------------8633445433346643101344
Q gi|254780808|r  111 ILSQENLDVI-QGEVAGFNTEKNIISSIVMQ---D---------------NSMIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus       111 l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~---~---------------g~~~~~~~viiatGtfl~g~~~  163 (626)
                      .+ ..++++. +-.|++|+.+++.++||.-.   .               ...+.+++||||||-|.+..-.
T Consensus       160 ~~-~~~v~~~~~t~a~~Li~~~g~V~GV~~~~~~~~~~~~g~~~~~~~~g~~~i~AkaVILATGGf~~N~em  230 (549)
T PRK12834        160 AA-RGLVTFRFRHRVDELIVTNGAVTGVRGTVLEPSDAPRGAASSRTVVGEFEFRAQAVIVTSGGIGGNHEL  230 (549)
T ss_pred             HH-CCCEEEEECCEEEEEEEECCEEEEEEEEECCCCCHHCCCCCCCCCCCEEEEECCEEEECCCCCCCCHHH
T ss_conf             41-697089956885799975998998886652566211044333334440799789699908987649999


No 78 
>PRK07045 putative monooxygenase; Reviewed
Probab=98.69  E-value=1.8e-08  Score=79.77  Aligned_cols=155  Identities=18%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----
Q ss_conf             98763578898894268999999985899899998076260----1246670022112248999998630399999----
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVREIDALDGLMGRV----   72 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~----ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~----   72 (626)
                      |-++.+||+|||||.||.=+|+.|+|.|++|.++|..+..-    |...-.|++.-+-+=-|..|+.+.|+.+...    
T Consensus         1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   80 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY   80 (388)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCEEEEEEEE
T ss_conf             99899858999928899999999986799899990899877778634889999999998869689986078514579995


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCE-EEEEECCCCCCCCCCC
Q ss_conf             988631488730787855534678784999999999999708996898-00101120258811-3222035863344543
Q gi|254780808|r   73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNII-SSIVMQDNSMIRCSTV  150 (626)
Q Consensus        73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~-~~v~~~~g~~~~~~~v  150 (626)
                      .|...+  ..++.+..++..-. ..+.+....+...+.+...|++++. ...|+.+..+...+ ..+.+.+|..+.+..|
T Consensus        81 ~~g~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~~~~adlv  157 (388)
T PRK07045         81 HDKELI--ASLDYRSASALGYF-ILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL  157 (388)
T ss_pred             CCCCEE--EEECCCCCCCCCCE-EEECHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEE
T ss_conf             089579--87445556666838-983099999999999745898199979899999984992599999589979974099


Q ss_pred             CCCCCCCC
Q ss_conf             33466431
Q gi|254780808|r  151 VLTTGTFL  158 (626)
Q Consensus       151 iiatGtfl  158 (626)
                      |-|-|...
T Consensus       158 IGADG~~S  165 (388)
T PRK07045        158 VGADGARS  165 (388)
T ss_pred             EECCCCCC
T ss_conf             99568862


No 79 
>PRK09126 hypothetical protein; Provisional
Probab=98.69  E-value=1.4e-07  Score=73.44  Aligned_cols=150  Identities=20%  Similarity=0.343  Sum_probs=88.7

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC--CCH-HHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             9876357889889426899999998589989999807626012466700221--122-489999986303999999886-
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG--LGK-GHLVREIDALDGLMGRVADAA-   76 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg--~ak-g~L~~Ei~aLgg~m~~~aD~~-   76 (626)
                      ||+  |||+|||||.+|.=+|+.||+.|++|.++|.++..-   ..+|+..|  ++= ..=++-++.||= -..+.+.. 
T Consensus         1 Mm~--~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~---~~~~~~~~r~~al~~~s~~~L~~lG~-~~~l~~~~~   74 (392)
T PRK09126          1 MMH--SDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA---LADPAFDGREIALTHASREILQRLGA-WDRIPEAEI   74 (392)
T ss_pred             CCC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCCCCEEEEECHHHHHHHHHCCC-HHHHHHHCC
T ss_conf             998--999999925899999999986899899990898533---45778886289868999999998789-667775076


Q ss_pred             -HHH-HHHHCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCC
Q ss_conf             -314-8873078---------785553467878499999999999970899689800-1011202588113222035863
Q gi|254780808|r   77 -GIQ-FRVLNVK---------KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSM  144 (626)
Q Consensus        77 -~i~-~r~ln~s---------kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~  144 (626)
                       .++ .++.+..         .+.....+..-+......+...+.+..+|++++..+ +|+++..++.. +.+.+.+|..
T Consensus        75 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~v~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~~~~g~~  153 (392)
T PRK09126         75 SPLRDAKVLNGRSPFALTFDARGTGADALGYLVPNHLIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDG-AQVTLANGRR  153 (392)
T ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCE-EEEEECCCCE
T ss_conf             741468995288750475047556766650002199999999999985899699869888999975980-5999858988


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3445433346643
Q gi|254780808|r  145 IRCSTVVLTTGTF  157 (626)
Q Consensus       145 ~~~~~viiatGtf  157 (626)
                      +.++-+|.|-|..
T Consensus       154 i~a~llVgADG~~  166 (392)
T PRK09126        154 LTARLLVAADSRF  166 (392)
T ss_pred             EEEEEEEEECCCC
T ss_conf             8877999806888


No 80 
>PRK06185 hypothetical protein; Provisional
Probab=98.67  E-value=1.6e-08  Score=80.03  Aligned_cols=146  Identities=17%  Similarity=0.267  Sum_probs=86.7

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894268999999985899899998076260----12466700221122489999986303999999886
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAA   76 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~----ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~   76 (626)
                      +|.++.||+|||||.||.=+|+.|||.|++|.++|.+++..    |.....++         ++-++.|| +.-...+..
T Consensus         2 ~~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~Rg~~i~p~t---------l~iL~~lG-l~~~l~~~~   71 (409)
T PRK06185          2 PMVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPST---------LELMDELG-LLERFLELP   71 (409)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHH---------HHHHHHCC-CHHHHHHCC
T ss_conf             98878998999918899999999997799999991899987786189878999---------99999879-868997367


Q ss_pred             -----HHHH-------HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEE--ECC
Q ss_conf             -----3148-------873078785553467878499999999999970899689800-1011202588113222--035
Q gi|254780808|r   77 -----GIQF-------RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIV--MQD  141 (626)
Q Consensus        77 -----~i~~-------r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~--~~~  141 (626)
                           .+++       ...+-++-|...--.+.+.+..|-+.+.+.....|++++..+ +|+++..+++.+.+|.  +.+
T Consensus        72 ~~~~~~~~~~~~g~~~~~~d~~~l~~~~~~~~~~~q~~ll~~L~~~a~~~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~d  151 (409)
T PRK06185         72 HSKVRTLRFDIGGRTVTLADFSRLPTRYPYIAMMPQWDFLDFLAEKASRYPTFTLRMGAEVTGLIEEGGRVAGVRYRTPD  151 (409)
T ss_pred             CCCEEEEEEEECCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEECCCEEEEEEECCC
T ss_conf             87334799995993899743001688888427701899999999998518995999688889999959908999998489


Q ss_pred             CC-CCCCCCCCCCCCC
Q ss_conf             86-3344543334664
Q gi|254780808|r  142 NS-MIRCSTVVLTTGT  156 (626)
Q Consensus       142 g~-~~~~~~viiatGt  156 (626)
                      |. .+.++-+|-|-|-
T Consensus       152 g~~~i~adlvVGADG~  167 (409)
T PRK06185        152 GELEIRADLTVGADGR  167 (409)
T ss_pred             CCEEEEEEEEEECCCC
T ss_conf             8589997299973899


No 81 
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.66  E-value=5.3e-07  Score=69.27  Aligned_cols=157  Identities=22%  Similarity=0.315  Sum_probs=83.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC-----------CCCCCCCCC--CC--CHHHHHHHHHHH-H
Q ss_conf             7635788988942689999999858998999980762601-----------246670022--11--224899999863-0
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG-----------SMSCNPAIG--GL--GKGHLVREIDAL-D   66 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a-----------el~Cnps~g--g~--akg~L~~Ei~aL-g   66 (626)
                      ++++||+|||+| ||-=||..+|+.|++|+|+|..+ .+|           ..+||+-..  |+  -+-...+.+.++ |
T Consensus         7 D~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~-~~GG~sa~sgGg~~~~~~~~~q~~~Gi~Ds~e~~~~~~~~~~~   84 (515)
T PRK12837          7 DEEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATD-KFGGTTAYSGGGGMWFPCNPVLQRAGTDDTIEDALTYYHAVVG   84 (515)
T ss_pred             CCCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             787397998906-99999999998799889997889-8881887458876650799999975887899999999998727


Q ss_pred             H-----HHHHHHHHHHHHHHHHCCCCC-------------------------------CCCCCH------HHHHH-----
Q ss_conf             3-----999999886314887307878-------------------------------555346------78784-----
Q gi|254780808|r   67 G-----LMGRVADAAGIQFRVLNVKKG-------------------------------PAVRGP------RTQAD-----   99 (626)
Q Consensus        67 g-----~m~~~aD~~~i~~r~ln~skG-------------------------------pAv~al------raqvD-----   99 (626)
                      +     ++...++.++-...+|....|                               |.....      |..+|     
T Consensus        85 ~~~~~~l~~~~~~~~~~~i~wL~~~~~~~f~~~~~~dy~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  164 (515)
T PRK12837         85 DRTPRELQETYVRGGAPLIEYLEQDEHFQFAELPWPDYFGKAPKARADGQRHIAPKPLPVAAAGELREQIRGPLDTDRLG  164 (515)
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHCC
T ss_conf             86739999999972799999998575851455466543577877756785212565666011301454304765433306


Q ss_pred             ----------HHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEEC-CC--CCCCC-CCCCCCCCCCCHHHH
Q ss_conf             ----------99999999999970899689800-101120258811322203-58--63344-543334664310134
Q gi|254780808|r  100 ----------RELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQ-DN--SMIRC-STVVLTTGTFLRGVI  162 (626)
Q Consensus       100 ----------R~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~-~g--~~~~~-~~viiatGtfl~g~~  162 (626)
                                +.+.. ...+.+...+++++..+ .+++|+.++++|+||... .|  ..+.+ ++||||||-|-+..-
T Consensus       165 ~~~~~~~~gG~~l~~-~~l~~~~~~~gv~i~~~t~~~~Li~d~g~V~Gv~a~~~g~~~~i~A~kgVILAtGGf~~N~e  241 (515)
T PRK12837        165 APPPDYLTGGRALIG-RFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERDGERVRVRARRGVLLAAGGFEQNDD  241 (515)
T ss_pred             CCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEEEECCCEEEEEECCEEEECCCCCCCCHH
T ss_conf             876322146699999-99999876169669926733788842985999999869917999724658990689654899


No 82 
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.66  E-value=1.8e-07  Score=72.54  Aligned_cols=104  Identities=28%  Similarity=0.402  Sum_probs=67.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      ||+|||||.||..||+.++|.|.+|+|++.+........|-|..-+..                                
T Consensus         1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~--------------------------------   48 (277)
T pfam07992         1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLE--------------------------------   48 (277)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCC--------------------------------
T ss_conf             999999769999999999849997999937999357557747711645--------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             78555346787849999999999997089968980-01011202588113222035863344543334664
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                          .      .+...+.....+.+.. .+++++. .+|+.+..+...   |.+..|..+.++.+|||||.
T Consensus        49 ----~------~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~  105 (277)
T pfam07992        49 ----A------AEVGKLDLRPLEQYKD-EGIEVLLGTGVTAIDKAGKK---VTLDDGKELTYDKLVIATGA  105 (277)
T ss_pred             ----C------CCHHHHHHHHHHHHHH-CCCEEEECCEEEEEECCCCE---EEECCCCEEECCEEEECCCC
T ss_conf             ----4------3314561899999987-59799968779999789998---99878939985999998799


No 83 
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.65  E-value=2.1e-07  Score=72.10  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=79.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC---------HHHHHHHHHHHHH----
Q ss_conf             63578898894268999999985899899998076260124667002---2112---------2489999986303----
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG---------KGHLVREIDALDG----   67 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a---------kg~L~~Ei~aLgg----   67 (626)
                      .+.||+|||+|.||+=||+++++. .+|.|++-.+-.     .+||.   ||++         .-|..--+.+=+|    
T Consensus         2 ~~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~-----~~~s~~a~Ggi~a~~~~~Ds~e~~~~Dt~~aG~gl~d~   75 (510)
T PRK08071          2 PSADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKR-----NSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE   75 (510)
T ss_pred             CCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCC-----CCCHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             979999999659999999983658-987999798999-----97425645443171389999999999999963788889


Q ss_pred             -HHHHHHHHHHHHHHHHCC--------CCCC------CCCC-HHH---HHHHHHHHHHHHHHHHC--CCCCEEEH-HHHC
Q ss_conf             -999999886314887307--------8785------5534-678---78499999999999970--89968980-0101
Q gi|254780808|r   68 -LMGRVADAAGIQFRVLNV--------KKGP------AVRG-PRT---QADRELYRLAMQREILS--QENLDVIQ-GEVA  125 (626)
Q Consensus        68 -~m~~~aD~~~i~~r~ln~--------skGp------Av~a-lra---qvDR~~fs~~vt~~l~~--~pni~i~~-~eV~  125 (626)
                       ++-..++.+.-..+.|-.        ..|.      .++. .|.   -.|+  -.+.+...|..  .++|++.. -.|+
T Consensus        76 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~ggh~~~R~~~~~gd~--tG~~i~~~l~~~~~~~i~i~~~~~~~  153 (510)
T PRK08071         76 EAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDA--TGKNLLEHLIQEVVPHVTVVEQEMVI  153 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC--CHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             9999999989999999997599651288864512527751686014217763--03899999999705881899747988


Q ss_pred             CCCCCCCCEEEEEECC--C--CCCCCCCCCCCCCCCCH
Q ss_conf             1202588113222035--8--63344543334664310
Q gi|254780808|r  126 GFNTEKNIISSIVMQD--N--SMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       126 ~l~~~~~~~~~v~~~~--g--~~~~~~~viiatGtfl~  159 (626)
                      +|+.+++.+.|+...+  |  ..+.|++||+|||-+-.
T Consensus       154 ~ll~~dg~v~G~~~~~~~g~~~~~~AkaVIlATGG~g~  191 (510)
T PRK08071        154 DLIIEDGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             EEEEECCEEEEEEEECCCCCEEEEEECEEEECCCCCCE
T ss_conf             88734890899999928998899982779985688630


No 84 
>KOG2820 consensus
Probab=98.65  E-value=7e-08  Score=75.51  Aligned_cols=154  Identities=21%  Similarity=0.213  Sum_probs=90.7

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-----------HHC-----CCCC-------------CCCCCCC
Q ss_conf             8763578898894268999999985899899998076-----------260-----1246-------------6700221
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-----------STI-----GSMS-------------CNPAIGG   52 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-----------~~~-----ael~-------------Cnps~gg   52 (626)
                      |.+.+||||||||-=||-||++||++|.+++|+|.-+           ++|     +|..             -+|.+.|
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g   83 (399)
T KOG2820           4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG   83 (399)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_conf             24651699986640000889999865770798733677765676567440212023368999999999999874846433


Q ss_pred             C--CH--H---------HHHHHHHH---HHHHHHHHHHHHHHHHHH-------------HCCCCCCCCCCHHHHHHHHHH
Q ss_conf             1--22--4---------89999986---303999999886314887-------------307878555346787849999
Q gi|254780808|r   53 L--GK--G---------HLVREIDA---LDGLMGRVADAAGIQFRV-------------LNVKKGPAVRGPRTQADRELY  103 (626)
Q Consensus        53 ~--ak--g---------~L~~Ei~a---Lgg~m~~~aD~~~i~~r~-------------ln~skGpAv~alraqvDR~~f  103 (626)
                      .  .+  |         +-+.++.+   ++++--++-+-..+--|-             +|-+   +|++- |  +  .-
T Consensus        84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~---gGvi~-a--~--ks  155 (399)
T KOG2820          84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNES---GGVIN-A--A--KS  155 (399)
T ss_pred             EEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCC---CCEEE-H--H--HH
T ss_conf             364156203650767877789999987650035553027989975877765786412203455---65741-8--8--99


Q ss_pred             HHHHHHHHHCCCCCEEEHHHHCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9999999970899689800101120--25881132220358633445433346643101344
Q gi|254780808|r  104 RLAMQREILSQENLDVIQGEVAGFN--TEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus       104 s~~vt~~l~~~pni~i~~~eV~~l~--~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~  163 (626)
                      -+..+..+..+-.|-+-..+|+.+.  .+++..++|.|.+|+.+.++..|+|+|..++..+-
T Consensus       156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~  217 (399)
T KOG2820         156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP  217 (399)
T ss_pred             HHHHHHHHHHCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEECCEEEEEECHHHHHHCC
T ss_conf             99999999870859962750456750467785258996668743312489983087886557


No 85 
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.65  E-value=1.5e-07  Score=73.17  Aligned_cols=159  Identities=23%  Similarity=0.299  Sum_probs=91.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC--C-CCC----CHHHHHHHH-----------
Q ss_conf             9876357889889426899999998589989999807626012466700--2-211----224899999-----------
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA--I-GGL----GKGHLVREI-----------   62 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps--~-gg~----akg~L~~Ei-----------   62 (626)
                      |.+.+|||+|||||-.||=.|+.+|++|++|+|+|.+ |--.--|.-||  | ||.    ....+++|-           
T Consensus         1 ~~~~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~-D~a~GTSs~ss~LiHgG~RY~~~d~~~are~l~e~~~l~~~A   79 (545)
T PRK11101          1 RDSQETDVIIIGGGATGAGIARDCALRGLRCILVERH-DIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIA   79 (545)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             9986176899998689999999998679939999899-761620012012712252312337099999999899999859


Q ss_pred             ----HHHHHHH--------------HHHHHHHHHHHHHH----------CCCCC--CCCCCHHHHHHHHHHHH-HHHHHH
Q ss_conf             ----8630399--------------99998863148873----------07878--55534678784999999-999999
Q gi|254780808|r   63 ----DALDGLM--------------GRVADAAGIQFRVL----------NVKKG--PAVRGPRTQADRELYRL-AMQREI  111 (626)
Q Consensus        63 ----~aLgg~m--------------~~~aD~~~i~~r~l----------n~skG--pAv~alraqvDR~~fs~-~vt~~l  111 (626)
                          .-+||+.              ...+..+++..+.+          |-++.  -|++.+-+|+|=..+.. .+..+.
T Consensus        80 phlv~~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~e~~~~eP~l~~~l~ga~~~~Dg~vdp~rL~ia~a~~A~  159 (545)
T PRK11101         80 RHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK  159 (545)
T ss_pred             HHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCHHCEEEEEECCEEECHHHHHHHHHHHHH
T ss_conf             16403068638971502267899999999976998477689999975868883020799955227873899999999999


Q ss_pred             HCCCCCEEEHHHHCCCCCCCCCEEEEEEC-----CCCCCCCCCCCCCCCCCCHHH
Q ss_conf             70899689800101120258811322203-----586334454333466431013
Q gi|254780808|r  112 LSQENLDVIQGEVAGFNTEKNIISSIVMQ-----DNSMIRCSTVVLTTGTFLRGV  161 (626)
Q Consensus       112 ~~~pni~i~~~eV~~l~~~~~~~~~v~~~-----~g~~~~~~~viiatGtfl~g~  161 (626)
                      ++=- --+..-+|++|..+++.+.||...     ....+.++.||=|+|++....
T Consensus       160 ~~GA-~i~~~t~V~~i~~~~g~v~gv~~~d~~tg~~~~i~ak~VINAAG~wad~I  213 (545)
T PRK11101        160 EHGA-RILTAHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI  213 (545)
T ss_pred             HCCC-CEECCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHH
T ss_conf             7482-02026477899941887999999986789689998569997667546778


No 86 
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.64  E-value=3.7e-07  Score=70.42  Aligned_cols=149  Identities=17%  Similarity=0.285  Sum_probs=83.7

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHH---HHHHH-HHHH
Q ss_conf             8763578898894268999999985899899998076--2601246670022112248999998630---39999-9988
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALD---GLMGR-VADA   75 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLg---g~m~~-~aD~   75 (626)
                      |+++|||+|||||.+|.=+|..||+.|++|.++|-+.  ..++...=+-++ ++..+ -++-++.+|   ++..+ +...
T Consensus         1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~d~R~~-al~~~-s~~~L~~lG~~~~i~~~~~~p~   78 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELPDVRVS-ALSRA-SEHILRNVGAWQGIEARRAAPY   78 (405)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE-EECHH-HHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999876899991589999999998589978999379986344678986588-87899-9999998798555676237851


Q ss_pred             HHH-----------HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC
Q ss_conf             631-----------4887307878555346787849999999999997089968980-0101120258811322203586
Q gi|254780808|r   76 AGI-----------QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS  143 (626)
Q Consensus        76 ~~i-----------~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~  143 (626)
                      ..+           +|.....+. |.   +..-+.........-+.+...+|+++.. .+++++..++.. +.+.+.+|.
T Consensus        79 ~~~~v~~~~~~~~i~~~~~~~~~-~~---lg~iv~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~v~~~~g~  153 (405)
T PRK08850         79 TAMEVWEQDSFARIEFDAESMAQ-PD---LGHIVENRVIQLALLEQIQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQ  153 (405)
T ss_pred             EEEEEEECCCCCEECCCHHHCCC-CC---CCHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCC-EEEEECCCC
T ss_conf             25899847987431247444178-54---21246449999999999973899199737535567617971-599977998


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             33445433346643
Q gi|254780808|r  144 MIRCSTVVLTTGTF  157 (626)
Q Consensus       144 ~~~~~~viiatGtf  157 (626)
                      .+.++-+|.|-|.-
T Consensus       154 ~i~a~llVgaDG~~  167 (405)
T PRK08850        154 ALTAKLVVGADGAN  167 (405)
T ss_pred             EEEEEEEEEECCCC
T ss_conf             88750899916987


No 87 
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.64  E-value=4.1e-08  Score=77.13  Aligned_cols=110  Identities=24%  Similarity=0.372  Sum_probs=74.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-----CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHC
Q ss_conf             64222553212335676433452013015787-----7645434776668988999999875434001001100012110
Q gi|254780808|r  270 YGPRYCPSIEDKIVRFGERNGHQIFLEPEGLN-----TDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYD  344 (626)
Q Consensus       270 ~gprycPsie~k~~~~~~~p~h~VqLrpE~~~-----~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd  344 (626)
                      .|-+|=...+-.+...|++.   +-.|-||..     .-.+-||=++|.|-..+-.+-+..|.||+.-+   .|      
T Consensus       428 ~GV~fIRGrvaeI~e~p~~~---liV~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~---~g------  495 (622)
T COG1148         428 YGVRFIRGRVAEIAEFPKKK---LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDE---DG------  495 (622)
T ss_pred             HCCEEECCCEEEEEECCCCC---EEEEEEECCCCCEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCC---CC------
T ss_conf             08536646410168879983---6999860346731112333799950444576568888754865178---77------


Q ss_pred             CC---CHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             23---545656776540334156621330433466666677899999874203
Q gi|254780808|r  345 YI---NPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSN  394 (626)
Q Consensus       345 ~~---~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~  394 (626)
                      |+   .|+ |.| .++ ..+|+|.||-..|----..|-|||-.|+.-|+..+.
T Consensus       496 F~k~~hPk-l~p-v~s-~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~  545 (622)
T COG1148         496 FLKEAHPK-LRP-VDS-NRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLG  545 (622)
T ss_pred             CCCCCCCC-CCC-CCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             60347877-664-555-678579810036984277888776788998999863


No 88 
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.64  E-value=6.6e-07  Score=68.62  Aligned_cols=37  Identities=35%  Similarity=0.558  Sum_probs=33.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             7635788988942689999999858998999980762
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      .+++||+|||+|+||.=||+.+|..|++|+|+|..+.
T Consensus         9 D~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~   45 (584)
T PRK12835          9 DRTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH   45 (584)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             7753879989678999999999988995899969999


No 89 
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=98.63  E-value=3.2e-07  Score=70.80  Aligned_cols=148  Identities=20%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--------CCCCCCHHHHH--------HHHHHHH---
Q ss_conf             5788988942689999999858998999980762601246670--------02211224899--------9998630---
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--------AIGGLGKGHLV--------REIDALD---   66 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--------s~gg~akg~L~--------~Ei~aLg---   66 (626)
                      =||+|||||.|||=+||+||++|++|.+++-...--..-|=||        +.....-+.+.        +-.+.|.   
T Consensus       257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~~~~  336 (660)
T PRK01747        257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEALGV  336 (660)
T ss_pred             CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             71899893899999999999789968999479875655666731267402578997689999999999999999875468


Q ss_pred             -------HHHHHHHH--HHHHHHHHHCCCCCC-----------------------CCCCHH-HHHHHHHHHHHHHHHHH-
Q ss_conf             -------39999998--863148873078785-----------------------553467-87849999999999997-
Q gi|254780808|r   67 -------GLMGRVAD--AAGIQFRVLNVKKGP-----------------------AVRGPR-TQADRELYRLAMQREIL-  112 (626)
Q Consensus        67 -------g~m~~~aD--~~~i~~r~ln~skGp-----------------------Av~alr-aqvDR~~fs~~vt~~l~-  112 (626)
                             |.+-.+.|  +..-+-+++.. -+|                       +.+-+. ..++-..   .++..+. 
T Consensus       337 ~~~~~~~Gvl~la~~e~~~~r~~~~~~~-~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~v~P~~---l~~aLl~~  412 (660)
T PRK01747        337 AFDHDWCGVLQLAWDEKSAEKIAKMLEA-GLPAELARALSAEEAEALAGLPVPCGGIFYPQGGWLCPAE---LCRALLAA  412 (660)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHH-CCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCEECHHH---HHHHHHHH
T ss_conf             6441467569954986889999999974-6994330247999997752998777837825897756899---99999986


Q ss_pred             CCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             08996898-00101120258811322203586334454333466431
Q gi|254780808|r  113 SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus       113 ~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                      .|++|+++ +.+|++|...++... +.+..+..+.+..||+|+|.-.
T Consensus       413 a~~~i~~~~~~~V~~l~~~~~~w~-l~~~~~~~~~Ad~VVlA~G~~s  458 (660)
T PRK01747        413 AGQGLTIHFGHEVARLERVDDQWQ-LDFAGGVLASAPVVVLANGHDA  458 (660)
T ss_pred             CCCCEEEEECCEEEEEEECCCEEE-EEECCCCEEECCEEEECCCCCH
T ss_conf             479859992744789997498089-9968992861467999056101


No 90 
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108   Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor .   This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.62  E-value=1.2e-07  Score=73.85  Aligned_cols=169  Identities=17%  Similarity=0.174  Sum_probs=114.0

Q ss_pred             CEEEECCCHHHHHHHHHHH--HCCCCEEEEECCHH-HCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             7889889426899999998--58998999980762-601246670022112248999998630-3999999886314887
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAA--KLGASTALITHKTS-TIGSMSCNPAIGGLGKGHLVREIDALD-GLMGRVADAAGIQFRV   82 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~A--r~G~~v~L~~~~~~-~~ael~Cnps~gg~akg~L~~Ei~aLg-g~m~~~aD~~~i~~r~   82 (626)
                      ||+|||||+|||==|.++|  +.|.+|.+++-.|+ ..    =||.-|     -=..|++.+| -....+.+.     ++
T Consensus         1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~----~~~tyg-----~w~~dl~~~~hawl~~l~~~-----~W   66 (419)
T TIGR01790         1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLP----GNNTYG-----VWDDDLSDLGHAWLADLVEH-----RW   66 (419)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCCCC-----CCCCCHHHHHHHHHHHHHCC-----CC
T ss_conf             97887477578999999997505871898678887677----687442-----12222327899999988416-----38


Q ss_pred             HCC--CCCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             307--8785-----553467878499999999999970899689800101120258811322203586334454333466
Q gi|254780808|r   83 LNV--KKGP-----AVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG  155 (626)
Q Consensus        83 ln~--skGp-----Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatG  155 (626)
                      -|.  -.+|     =..+= ..+||..|.+.+......+..+..+++.|.++..+...-.-|.+..|..+.|+.||.|+|
T Consensus        67 ~~~~~y~~~~~~~~L~~~Y-~~~~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~~~g~~i~Ar~V~Da~G  145 (419)
T TIGR01790        67 SDAYEYRFPEEPIKLGRAY-GSVDRAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVECAGGQRIQARLVIDARG  145 (419)
T ss_pred             CCEEEECCCCCCHHCCCCC-EEECHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEECCC
T ss_conf             9806883873430105665-000158999999986200376133013566665440551114428973784007883257


Q ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             43101344432023322247511133100001011200
Q gi|254780808|r  156 TFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDT  193 (626)
Q Consensus       156 tfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~  193 (626)
                      --- |.+.  .........+...+.++--.+.+..+..
T Consensus       146 ~~~-G~l~--~~~~~~~~~g~Q~ayG~~~rl~~~P~~~  180 (419)
T TIGR01790       146 FKP-GKLV--QYEKASLAVGYQAAYGVEVRLSEPPHGP  180 (419)
T ss_pred             CCC-CCEE--CCCCCCCCCEEEEEEEEEEEEECCCCCC
T ss_conf             776-5101--1256676421213132778872478799


No 91 
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.59  E-value=5.5e-07  Score=69.15  Aligned_cols=148  Identities=18%  Similarity=0.246  Sum_probs=85.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHCCCCCCCCCC--CCCCH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76357889889426899999998589---9899998076260124667002--21122-489999986303999999886
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLG---ASTALITHKTSTIGSMSCNPAI--GGLGK-GHLVREIDALDGLMGRVADAA   76 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~~~~~~~ael~Cnps~--gg~ak-g~L~~Ei~aLgg~m~~~aD~~   76 (626)
                      +++|||+|||||.+|+=+|++|++.|   ++|.++|.+......   .|++  .+++= ---++-++.|| +.-...+.+
T Consensus         1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~---~~~~d~Ra~al~~~s~~~L~~lG-l~~~l~~~~   76 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDA---HPGFDARAIALAAGTCQQLARLG-VWQALADCA   76 (395)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC---CCCCCCEEEEECHHHHHHHHHCC-CHHHHHHHC
T ss_conf             97189899993899999999999618899749999378854456---88877447888899999999879-928878627


Q ss_pred             H----HH------H--HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC
Q ss_conf             3----14------8--87307878555346787849999999999997089968980-0101120258811322203586
Q gi|254780808|r   77 G----IQ------F--RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS  143 (626)
Q Consensus        77 ~----i~------~--r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~  143 (626)
                      .    ++      +  -.++. +......+.-.+.+..+.+...+.+..+|+|++.. .+|+++..++..+. +.+.+|.
T Consensus        77 ~pi~~i~v~d~~~~~~~~~~~-~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~-v~l~~g~  154 (395)
T PRK05732         77 TPIRHIHVSDRGHAGFVRLDA-EDYGVDALGYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVR-VTLDDGE  154 (395)
T ss_pred             CCCEEEEEEECCCCCCEECCH-HHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEE-EEECCCC
T ss_conf             654289984068677210563-32387656543236999999999884089969976988999998289279-9987998


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3344543334664
Q gi|254780808|r  144 MIRCSTVVLTTGT  156 (626)
Q Consensus       144 ~~~~~~viiatGt  156 (626)
                      .+.++-+|.|-|.
T Consensus       155 ~i~a~lvVgADG~  167 (395)
T PRK05732        155 TLTARLLVAADGT  167 (395)
T ss_pred             EEEECEEEEECCC
T ss_conf             9983799992899


No 92 
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.59  E-value=2.1e-07  Score=72.06  Aligned_cols=143  Identities=25%  Similarity=0.365  Sum_probs=80.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076---2601246670022112248999998630399999988631
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      |.+.|||+|||||-||--||..+|+.|.+|+|+|.+.   -++----|=||=--+...++..+++......+...+...+
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~~   80 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI   80 (454)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             98515489989777799999999967997799930698676557467314499999999999986414236520577853


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             4887307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf  157 (626)
                      -|        +.+.+- .+ +.........+.+....++++++++..=+.  ++ .+.|.......+.++.+|||||.-
T Consensus        81 d~--------~~~~~~-k~-~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~-~v~V~~~~~~~~~a~~iiIATGS~  146 (454)
T COG1249          81 DF--------EKLLAR-KD-KVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PH-TVEVTGEDKETITADNIIIATGSR  146 (454)
T ss_pred             CH--------HHHHHH-HH-HHHHHHHHHHHHHHHHCCCEEEEEEEEECC--CC-EEEEECCCCEEEEECEEEEECCCC
T ss_conf             89--------999999-99-999987677999997489889998999888--99-899906875499827899906998


No 93 
>PRK08013 hypothetical protein; Provisional
Probab=98.58  E-value=9.7e-07  Score=67.40  Aligned_cols=153  Identities=15%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHH-HHHHHHHHH---HHHHH-HHHHHHH
Q ss_conf             635788988942689999999858998999980762601246670022112248-999998630---39999-9988631
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDALD---GLMGR-VADAAGI   78 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~-L~~Ei~aLg---g~m~~-~aD~~~i   78 (626)
                      ++|||+|||||.+|.=+|..+|+.|++|.++|.++..-....=.+.+...+-.. -++=++.||   .+... ++--..+
T Consensus         2 ~~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~~~~   81 (400)
T PRK08013          2 QSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCYHGM   81 (400)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEE
T ss_conf             96788999935999999999971899589991899876778888770444008999999998798076686067761157


Q ss_pred             HH------HHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             48------87307878555-346787849999999999997089968980-01011202588113222035863344543
Q gi|254780808|r   79 QF------RVLNVKKGPAV-RGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTV  150 (626)
Q Consensus        79 ~~------r~ln~skGpAv-~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~v  150 (626)
                      +.      --+.....+.+ ..+..-++.....+...+.+..++|++++. .+|+++....+ .+.+.+.+|..+.++-+
T Consensus        82 ~v~~~~~~g~~~~~~~~~~~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~~~v~l~~g~~i~a~lv  160 (400)
T PRK08013         82 EVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN-EAFLTLKDGSMLTARLV  160 (400)
T ss_pred             EEECCCCCCEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCC-EEEEEECCCCEEEEEEE
T ss_conf             98637877524326201387523043020889999999998689829986866899871697-15999479989974289


Q ss_pred             CCCCCCC
Q ss_conf             3346643
Q gi|254780808|r  151 VLTTGTF  157 (626)
Q Consensus       151 iiatGtf  157 (626)
                      |.|-|..
T Consensus       161 VgADG~~  167 (400)
T PRK08013        161 IGADGAN  167 (400)
T ss_pred             EECCCCC
T ss_conf             9978876


No 94 
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.57  E-value=3.7e-07  Score=70.36  Aligned_cols=151  Identities=18%  Similarity=0.234  Sum_probs=81.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      |-+.+|||+|||||.+|.=+|+.||+.|++|.++|.++..-.. .-+-+++-...+  ++-++.|| +.-.+.+.. ..+
T Consensus        13 ~~~~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~-~~~ra~~l~~~s--~~iL~~lG-l~~~i~~~~-~~~   87 (413)
T PRK07364         13 LRSLDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAV-AKGQAYALSLLS--ARIFEGIG-VWEKILPHI-GPF   87 (413)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCEEEECHHH--HHHHHHCC-CHHHHHHHC-CCC
T ss_conf             9989899899992799999999998689988999179976667-887389958999--99999879-968988614-754


Q ss_pred             HHHCC--CCCCCC----------CCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCC--CCC
Q ss_conf             87307--878555----------34678784999999999999708996898-0010112025881132220358--633
Q gi|254780808|r   81 RVLNV--KKGPAV----------RGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDN--SMI  145 (626)
Q Consensus        81 r~ln~--skGpAv----------~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g--~~~  145 (626)
                      +-+.-  ..++..          ..+.-.+.....-+...+.+.+.+|+++. ..+|+++..++..+.......+  ..+
T Consensus        88 ~~i~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i  167 (413)
T PRK07364         88 RQIQLSDADFPGVVRFSPEDLGTEALGYVGEHQVLLEALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTL  167 (413)
T ss_pred             CEEEEEECCCCCEEEECHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEE
T ss_conf             25999818987467516554388754233002999999999998489948982877999997698369999829913899


Q ss_pred             CCCCCCCCCCC
Q ss_conf             44543334664
Q gi|254780808|r  146 RCSTVVLTTGT  156 (626)
Q Consensus       146 ~~~~viiatGt  156 (626)
                      .++-+|-|-|.
T Consensus       168 ~a~llIgaDG~  178 (413)
T PRK07364        168 QSKLVVAADGA  178 (413)
T ss_pred             EEEEEEEECCC
T ss_conf             85689993188


No 95 
>PRK08774 consensus
Probab=98.56  E-value=3.4e-07  Score=70.65  Aligned_cols=147  Identities=20%  Similarity=0.340  Sum_probs=80.8

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC---CCCC--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899899998076260124667002---2112--2489999986303999999886
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI---GGLG--KGHLVREIDALDGLMGRVADAA   76 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~---gg~a--kg~L~~Ei~aLgg~m~~~aD~~   76 (626)
                      |.+.|||+|||||.+|.-+|..+++.|++|.|+|.+|..-     .|+.   ..++  .+ -++-+++|| +.....+..
T Consensus         1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~~~~-----~~~~~d~R~~al~~~-s~~~L~~lG-v~~~l~~~~   73 (402)
T PRK08774          1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATPAGA-----PPAVFDQRNLSFAAA-TVNALGALG-VMAKLRSAP   73 (402)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----CCCCCCCCEEEECHH-HHHHHHHCC-CHHHHHHHC
T ss_conf             9899878999916999999999966899789993799888-----866787316773799-999999889-868766405


Q ss_pred             H-HHHHHHCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCC--CEEEEEECC
Q ss_conf             3-14887307878-----------5553467878499999999999970899689800-1011202588--113222035
Q gi|254780808|r   77 G-IQFRVLNVKKG-----------PAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKN--IISSIVMQD  141 (626)
Q Consensus        77 ~-i~~r~ln~skG-----------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~--~~~~v~~~~  141 (626)
                      . |+ ++--...|           ....++..-+--..+.+.+.+.+...++++.++. ++.++.....  ..+.+.+.+
T Consensus        74 ~pi~-~i~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  152 (402)
T PRK08774         74 GPIR-RIHVSRAGDFGRVQLDAADYGRDAFGQVVVARDFGEALQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATAD  152 (402)
T ss_pred             CCEE-EEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECC
T ss_conf             6517-999850787755653677608876432001699999999999857894898222899999953686169999379


Q ss_pred             CC-CCCCCCCCCCCCC
Q ss_conf             86-3344543334664
Q gi|254780808|r  142 NS-MIRCSTVVLTTGT  156 (626)
Q Consensus       142 g~-~~~~~~viiatGt  156 (626)
                      |. .+.++-+|.|-|.
T Consensus       153 g~~~i~a~llVgADG~  168 (402)
T PRK08774        153 GEQLVRARLVVGADGS  168 (402)
T ss_pred             CCEEEEECEEEECCCC
T ss_conf             9579830599995899


No 96 
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.55  E-value=9.3e-08  Score=74.64  Aligned_cols=150  Identities=23%  Similarity=0.323  Sum_probs=75.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--CCCC-------CCH--HHHHHH-HHHHHH----
Q ss_conf             635788988942689999999858998999980762601246670--0221-------122--489999-986303----
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--AIGG-------LGK--GHLVRE-IDALDG----   67 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--s~gg-------~ak--g~L~~E-i~aLgg----   67 (626)
                      ...||+|||+|.||+=||+++++.|++|.|++-.+-.    .+|-  +-||       ..-  -..+.+ +.+=+|    
T Consensus        14 ~~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~----~g~s~~a~gGi~a~~~~~~Ds~e~~~~dt~~~g~gl~d~   89 (533)
T PRK07804         14 DAADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALT----ATATRYAQGGIAVVLPDPGDSVDAHVADTLAAGAGLCDP   89 (533)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC----CCCHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             2268899996499999999998679988999788999----970799868778845799999999999999853787899


Q ss_pred             -HHHHHHHHHHHHHHHHCC-----CCCCC---------CC-CHHH-HHHHHHHHHHHHHHHHC-CCCCEEE-HHHHCCCC
Q ss_conf             -999999886314887307-----87855---------53-4678-78499999999999970-8996898-00101120
Q gi|254780808|r   68 -LMGRVADAAGIQFRVLNV-----KKGPA---------VR-GPRT-QADRELYRLAMQREILS-QENLDVI-QGEVAGFN  128 (626)
Q Consensus        68 -~m~~~aD~~~i~~r~ln~-----skGpA---------v~-alra-qvDR~~fs~~vt~~l~~-~pni~i~-~~eV~~l~  128 (626)
                       ++-..++.+.--.+.|-.     ++-+-         ++ ..|. -+..+..-..+...|.. -.+|+|+ +-.+++|+
T Consensus        90 ~~v~~l~~~a~~~v~~L~~~G~~f~~~~~G~~~~~~~gGh~~~R~~~~~~d~~G~~i~~~l~~~~~~v~i~~~~~~~~ll  169 (533)
T PRK07804         90 DAVRSIVADGPRAVRELVALGARFDESPPGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAARMLDIRENHVALDLL  169 (533)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf             99999999999999999983983654899847777327876653561388861899999999985076079506999998


Q ss_pred             CCCCCEEEEEECCC---CCCCCCCCCCCCCCC
Q ss_conf             25881132220358---633445433346643
Q gi|254780808|r  129 TEKNIISSIVMQDN---SMIRCSTVVLTTGTF  157 (626)
Q Consensus       129 ~~~~~~~~v~~~~g---~~~~~~~viiatGtf  157 (626)
                      .+++.+.++.....   ..+.+++||+|||-+
T Consensus       170 ~d~~~v~gv~~~~~~~~~~i~AkaVILATGG~  201 (533)
T PRK07804        170 HDGRAVTGVLVGSPDGVGAVHAPAVVLATGGL  201 (533)
T ss_pred             ECCCEEEEEEEEECCCEEEEECCEEEECCCCC
T ss_conf             06998999999848967999919799868997


No 97 
>PRK11445 putative oxidoreductase; Provisional
Probab=98.54  E-value=5.3e-07  Score=69.27  Aligned_cols=144  Identities=18%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf             357889889426899999998589989999807626012----4667002211224899999863039999--9988631
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS----MSCNPAIGGLGKGHLVREIDALDGLMGR--VADAAGI   78 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae----l~Cnps~gg~akg~L~~Ei~aLgg~m~~--~aD~~~i   78 (626)
                      .|||+|||||-|||=||..+|+. .+|+|++-+-. +++    -+|-=.|   .. ...+++..++-.+..  ..+..-.
T Consensus         1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~-~~~~pr~KpCGG~I---~~-~a~~~l~~~~~~ip~~~l~~~~i~   74 (348)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ-CGTEGFSKPCGGLL---AP-DAQKSFAKDGLTLPKDVIANPQIF   74 (348)
T ss_pred             CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCC-CCCCCCCCCCCCCC---CH-HHHHHHHHCCCCCCHHHCCCCEEE
T ss_conf             99799989788999999998268-98899981356-56799988786871---97-289998750678856650155378


Q ss_pred             HHHHHCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC--CCCCCCCCC
Q ss_conf             4887307878555----3467878499999999999970899689800101120258811322203586--334454333
Q gi|254780808|r   79 QFRVLNVKKGPAV----RGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVL  152 (626)
Q Consensus        79 ~~r~ln~skGpAv----~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~--~~~~~~vii  152 (626)
                      ..++.+.+ .+-.    ..- ..+||+.|-..+.+...++ .-..+.+.+.++..+++.+..+.+.+|.  .+.++.+|-
T Consensus        75 ~~~~~~~~-~~~~~~~~~~y-i~~~R~~fD~~L~~~a~~~-~~~~~~~~~~~i~~~~~g~~v~~~~~g~~~~~~a~~iIG  151 (348)
T PRK11445         75 AVKTIDLA-NSLTRNYQRSY-INIDRHKFDLWLKSLIPAS-VEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVG  151 (348)
T ss_pred             EEEECCCC-CCCCCCCCCEE-EECCHHHHHHHHHHHHHHC-CCEEEEEEEEEEEECCCEEEEEEEECCEEEEEEECEEEE
T ss_conf             76642787-75221356607-6055999999999988728-738971489999983980799997189078987378998


Q ss_pred             CCCCC
Q ss_conf             46643
Q gi|254780808|r  153 TTGTF  157 (626)
Q Consensus       153 atGtf  157 (626)
                      |.|.-
T Consensus       152 ADGan  156 (348)
T PRK11445        152 ADGAN  156 (348)
T ss_pred             CCCCC
T ss_conf             98977


No 98 
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.52  E-value=7.2e-07  Score=68.32  Aligned_cols=129  Identities=20%  Similarity=0.305  Sum_probs=71.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf             3578898894268999999985899899998076--26012466700221122489-----9999863039999998863
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHL-----VREIDALDGLMGRVADAAG   77 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L-----~~Ei~aLgg~m~~~aD~~~   77 (626)
                      +|||+|||||-||.=||  ++..|.+|+|+|-..  -++----|-||     |.++     .++++..        ..-+
T Consensus         1 ~YDviVIG~Gpgg~~~a--~~~aG~kValVE~~~~GGtCln~GCiPs-----K~ll~~a~~~~~~~~~--------~~~g   65 (453)
T PRK07846          1 HYDLIIIGTGSGNSILD--ERFADKRIAIVEKGTFGGTCLNVGCIPT-----KMFVYAADVAQTIREA--------SRLG   65 (453)
T ss_pred             CCCEEEECCCHHHHHHH--HHHCCCEEEEEECCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHH--------HHCC
T ss_conf             97789989888999999--9982992999978997781716166889-----9999999999999765--------6268


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             14887307878555346787849-----9999999999970899689800101120258811322203586334454333
Q gi|254780808|r   78 IQFRVLNVKKGPAVRGPRTQADR-----ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVL  152 (626)
Q Consensus        78 i~~r~ln~skGpAv~alraqvDR-----~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~vii  152 (626)
                      +....      +.+.-... .+|     +..+..-.+.+.+.+++++++++..=.  +++.+....+.++..+.++.+||
T Consensus        66 i~~~~------~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~--~~~~v~v~~~~~~~~i~a~~iiI  136 (453)
T PRK07846         66 VDAHI------DRVRWPDI-VSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFV--DADGLYTLRTGDGEEITADQIVI  136 (453)
T ss_pred             EECCC------CCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC--CCCEEEECCCCCCEEEEECEEEE
T ss_conf             20677------84199999-99999999999875699971589918998489991--59867861379846998164999


Q ss_pred             CCCCC
Q ss_conf             46643
Q gi|254780808|r  153 TTGTF  157 (626)
Q Consensus       153 atGtf  157 (626)
                      |||.-
T Consensus       137 ATGS~  141 (453)
T PRK07846        137 AAGSR  141 (453)
T ss_pred             ECCCC
T ss_conf             02887


No 99 
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.49  E-value=3.4e-07  Score=70.62  Aligned_cols=129  Identities=23%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             6357889889426899999998589989999807626012----46670022112248999-998630399999988631
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS----MSCNPAIGGLGKGHLVR-EIDALDGLMGRVADAAGI   78 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae----l~Cnps~gg~akg~L~~-Ei~aLgg~m~~~aD~~~i   78 (626)
                      |+|||+|||||-||.-||..+  .|.+|+|+|-.+  +|=    --|=||     |-++.. ++-   ..+... .+-++
T Consensus         1 k~YDviVIGaGpgG~~~a~~~--ag~kValvEk~~--~GGtCln~GCIPs-----K~ll~~a~~~---~~~~~~-~~~Gi   67 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT--FGGTCLNVGCIPT-----KMFVYAAEVA---QSIGES-ARLGI   67 (452)
T ss_pred             CCCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC--CCCCCCCCCHHHH-----HHHHHHHHHH---HHHHHH-HHCCE
T ss_conf             947689999868999999998--299099997899--2785802358889-----9999999999---999777-73583


Q ss_pred             HHHHHCCCCCCCCC--CH--H---HHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             48873078785553--46--7---87849999999999997089968980010112025881132220358633445433
Q gi|254780808|r   79 QFRVLNVKKGPAVR--GP--R---TQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVV  151 (626)
Q Consensus        79 ~~r~ln~skGpAv~--al--r---aqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~vi  151 (626)
                      ..      ..+.+.  .+  |   ..+|.......-.....++++|++++++..=+  +++.   +.+.+|..+.++.+|
T Consensus        68 ~~------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~--~~~t---v~v~~g~~~~a~~ii  136 (452)
T TIGR03452        68 DA------EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRT---LRTGDGEEITGDQIV  136 (452)
T ss_pred             EC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC--CCCE---EECCCCCEEEECEEE
T ss_conf             25------667307999999998767899975599998536778869999899993--7857---981898789846699


Q ss_pred             CCCCC
Q ss_conf             34664
Q gi|254780808|r  152 LTTGT  156 (626)
Q Consensus       152 iatGt  156 (626)
                      ||||.
T Consensus       137 IATGs  141 (452)
T TIGR03452       137 IAAGS  141 (452)
T ss_pred             ECCCC
T ss_conf             93799


No 100
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.48  E-value=2.2e-06  Score=64.81  Aligned_cols=35  Identities=31%  Similarity=0.601  Sum_probs=32.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +++|||+|||+| ||.=||+.+++.|.+|+|+|..+
T Consensus        14 D~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~   48 (566)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS   48 (566)
T ss_pred             CCEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCC
T ss_conf             555497998846-99999999998899389996899


No 101
>PRK11749 putative oxidoreductase; Provisional
Probab=98.47  E-value=3.1e-06  Score=63.78  Aligned_cols=45  Identities=22%  Similarity=0.181  Sum_probs=38.7

Q ss_pred             HHHHHHHCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             677654033415662133-0433466666677899999874203345
Q gi|254780808|r  352 FPTLETKKISGLFLAGQI-NGTTGYEEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       352 ~~tLe~k~~~~LffAGQI-~GteGYeEAAAqGl~AGiNa~~~~~~~~  397 (626)
                      +.+++| .+||+|.||-+ +|.+.=++|.+.|-.|.....++++|..
T Consensus       413 d~~~~T-s~~gVFAaGD~~~G~~~vv~Ai~~Gr~AA~~I~~~L~G~~  458 (460)
T PRK11749        413 DETGRT-SLPGVFAGGDIVTGAATVVLAVGDGKDAAEAIHEYLEGAA  458 (460)
T ss_pred             CCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             899722-8999999458776705999999999999999999858988


No 102
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.45  E-value=6.1e-06  Score=61.73  Aligned_cols=58  Identities=28%  Similarity=0.378  Sum_probs=41.9

Q ss_pred             HHHHCC----CC--HHHHHHHHHH------HCCCEEEEEEEEEC---------CCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             121102----35--4565677654------03341566213304---------33466666677899999874203345
Q gi|254780808|r  340 AIEYDY----IN--PKELFPTLET------KKISGLFLAGQING---------TTGYEEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       340 ~ieyd~----~~--P~~L~~tLe~------k~~~~LffAGQI~G---------teGYeEAAAqGl~AGiNa~~~~~~~~  397 (626)
                      +|||+-    +|  ..+|+..=+.      |-++|||.||-+||         -.-..|-..=|-+||-|||..++.++
T Consensus       828 vVHhTMGGlkINtkAqVL~~dg~vnV~~~gKPI~GLYAAGEVTGGVHG~NRLGGNSLlECVVFGRIAGd~AA~i~~~~~  906 (1167)
T PTZ00306        828 SIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK  906 (1167)
T ss_pred             CCEECCCCEEECCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             5612689836888854884478512356687427657864214765667666057787888614877698999875253


No 103
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.40  E-value=4e-06  Score=63.06  Aligned_cols=148  Identities=16%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf             87635788988942689999999858998999980762601246670022112248999998630399999988631---
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI---   78 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i---   78 (626)
                      |.+..+|+|||||.||.=+|+.|+|.|++|.++|..++- .+....=++.    ..-.+=++.||-. -.+... ++   
T Consensus         1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~-~~~G~gi~l~----pn~~~~L~~lGl~-~~~~~~-~~~~~   73 (396)
T PRK08163          1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI-GEIGAGIQLG----PNAFSALDALGVG-EAARQR-AVFTD   73 (396)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCEEEEC----HHHHHHHHHCCCH-HHHHHH-CCCCC
T ss_conf             989984999897889999999999789999999179988-8787188989----8999999987990-899831-66766


Q ss_pred             HHHHHCCCCC------CCCCC-------HHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf             4887307878------55534-------678784999999999999708996898-001011202588113222035863
Q gi|254780808|r   79 QFRVLNVKKG------PAVRG-------PRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSM  144 (626)
Q Consensus        79 ~~r~ln~skG------pAv~a-------lraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~  144 (626)
                      .+++.+...|      |....       +-..+.|.......-+.+.+.|++++. ..+|+++..++.. +.|.+.+|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~i~R~~L~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~-v~v~~~dG~~  152 (396)
T PRK08163         74 HLTMMDAVDAEEVVRIPTGQAFRDRFGNPYAVIHRADIHLSLLEAVQDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNR  152 (396)
T ss_pred             CEEEEECCCCCEEEEECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCE-EEEEECCCCE
T ss_conf             259997688858885047604566249972687799999999999985698178709999999953997-9999889989


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3445433346643
Q gi|254780808|r  145 IRCSTVVLTTGTF  157 (626)
Q Consensus       145 ~~~~~viiatGtf  157 (626)
                      ..+..||-|-|-.
T Consensus       153 ~~adlvVGADG~~  165 (396)
T PRK08163        153 WTGDALIGCDGVK  165 (396)
T ss_pred             EEEEEEEECCCCC
T ss_conf             9876999648877


No 104
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288    L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.37  E-value=6.9e-06  Score=61.34  Aligned_cols=362  Identities=21%  Similarity=0.249  Sum_probs=207.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-HHH----------CC-CCCCCC-CCCC-------CCHH----HHHH
Q ss_conf             357889889426899999998589989999807-626----------01-246670-0221-------1224----8999
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-TST----------IG-SMSCNP-AIGG-------LGKG----HLVR   60 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~~~----------~a-el~Cnp-s~gg-------~akg----~L~~   60 (626)
                      ++||.|||.|.||--||+++++.|-.|.+++.+ .-+          || -+.=+- ||-.       -|+|    +.|.
T Consensus         2 ~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~DdSi~~Hv~DTL~AGaG~cD~~aV~   81 (546)
T TIGR00551         2 EADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAETDDSIDAHVEDTLAAGAGLCDEEAVE   81 (546)
T ss_pred             CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             63599975208999999853326863789758755556752000112663038755856877899998446788688999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----------HCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH
Q ss_conf             9986303999999886314887----------307878---------555346787849999999999997089968980
Q gi|254780808|r   61 EIDALDGLMGRVADAAGIQFRV----------LNVKKG---------PAVRGPRTQADRELYRLAMQREILSQENLDVIQ  121 (626)
Q Consensus        61 Ei~aLgg~m~~~aD~~~i~~r~----------ln~skG---------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~  121 (626)
                      .+=.=|..|...==..++.|--          --+..|         .||-+++..|-     ....+.+.++|||+|++
T Consensus        82 ~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS~~RI~HA~GDaTGr~~~-----~~L~~~a~~~p~~~~~~  156 (546)
T TIGR00551        82 FVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHSYRRILHAAGDATGREVI-----STLLKKARSEPNVEIIE  156 (546)
T ss_pred             HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH-----HHHHHHHHCCCCEEECC
T ss_conf             9985368999999866922026779887443100133566777427735763248999-----99999974377624101


Q ss_pred             H-HHCCCCCC-------CCCEEEEEECCC-----CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             0-10112025-------881132220358-----6334454333466431013444320233222475111331000010
Q gi|254780808|r  122 G-EVAGFNTE-------KNIISSIVMQDN-----SMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMK  188 (626)
Q Consensus       122 ~-eV~~l~~~-------~~~~~~v~~~~g-----~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~  188 (626)
                      + -+.+|..+       ++.+.||-+...     ..+.+++||||||-+-+                             
T Consensus       157 ~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~-----------------------------  207 (546)
T TIGR00551       157 GEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGK-----------------------------  207 (546)
T ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCH-----------------------------
T ss_conf             214444442250247988879999997167872377630100032077321-----------------------------


Q ss_pred             HHHHCCCCCCCCCCHHHHCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC--CC-CCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             11200544445441011000013443-211478766877743565780000--00-001232001477764024575414
Q gi|254780808|r  189 FDFDTGRLKTGTPARLDGKTIIWDKT-EKQFADERLIPFSFMTDKITNRQI--EC-GITRTNLETHRIIMENIKHSAIYS  264 (626)
Q Consensus       189 ~~~~~~r~ktgtppri~~~sidf~~~-e~q~~d~~~~~~s~~~~~~~~~q~--~~-~~~~t~~~~~~~~~~~~~~~~~~~  264 (626)
                           -+..|.+|...-+|-|-.--. -.+-.|=  +++-|-..-+..++.  +- -++|-.       |-+.-.     
T Consensus       208 -----ly~~TTNp~~stGDGIala~raG~~v~DL--EF~QFHPT~L~~~~~GG~~~LitEAv-------RGEGA~-----  268 (546)
T TIGR00551       208 -----LYSFTTNPKVSTGDGIALAWRAGVEVRDL--EFVQFHPTALVKPRVGGRYFLITEAV-------RGEGAI-----  268 (546)
T ss_pred             -----HHHHHCCCCCCCCHHHHHHHHCCCCEECC--CCCCCCCCCCCCCCCCCCCCCCCCEE-------ECCCCE-----
T ss_conf             -----00312388742314689998728722046--34256721113788789876400110-------038742-----


Q ss_pred             CCCCCCCCCCCC--------------C--CCCCCCCCCC-CCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             432356422255--------------3--2123356764-3345201301578776454347766689889999998754
Q gi|254780808|r  265 GDIKSYGPRYCP--------------S--IEDKIVRFGE-RNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIP  327 (626)
Q Consensus       265 g~~~~~gprycP--------------s--ie~k~~~~~~-~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IP  327 (626)
                       -..+.|.|+-+              +  |-.+..+..+ ...+.|||--=+.+.+     =|+++.|.=..        
T Consensus       269 -Lvd~~G~Rf~~~~hp~GeLAPRDiVaRAI~~~m~~~~~dPtqacVfLD~s~Ie~~-----~f~~RFP~I~~--------  334 (546)
T TIGR00551       269 -LVDRDGKRFMADVHPRGELAPRDIVARAIDEEMKKGGKDPTQACVFLDASGIEDD-----FFKSRFPTITA--------  334 (546)
T ss_pred             -EECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH-----HHHCCCCHHHH--------
T ss_conf             -3558886702677888876740488999999997228793406888743588834-----65212727899--------


Q ss_pred             HHHHCCEEEECCHHHHCCCC--HH--------HHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHH---------------
Q ss_conf             34001001100012110235--45--------656776540334156621330433466666677---------------
Q gi|254780808|r  328 GLEKVNIIRPGYAIEYDYIN--PK--------ELFPTLETKKISGLFLAGQINGTTGYEEAAAQG---------------  382 (626)
Q Consensus       328 GLEnAef~R~Gy~ieyd~~~--P~--------~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqG---------------  382 (626)
                           .....|.-++.+-++  |-        ..|..-||. ++|||-+|         |+|.+|               
T Consensus       335 -----~c~~~GID~~~~~IPv~P~AHY~~GGi~vD~~g~T~-~~GLYAiG---------E~A~tGlHGANRLASNSLLEc  399 (546)
T TIGR00551       335 -----KCRGAGIDIVREPIPVVPAAHYTMGGISVDAYGRTT-VPGLYAIG---------EVACTGLHGANRLASNSLLEC  399 (546)
T ss_pred             -----HHHHCCCCCCCCCCCCCCCCCEEECCEEECCCCEEC-CCCEEEEH---------HHHCCCCCHHHHHHHHHHHHH
T ss_conf             -----998578875558715446671573678875763321-34301200---------243066511467777878899


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             899999874203345654653210799999988607877-4024420001221211578713668887
Q gi|254780808|r  383 LVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL-EPYRMFTSRAEYRISLRPDNADNRLTPI  449 (626)
Q Consensus       383 l~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~~-EPYRMfTSRAEyRL~LR~DNAd~RLt~~  449 (626)
                      ||-|..|++.+..++| .=.|+..|---..|.-...-.+ |=--+=-.+.|.|.+||+.-.-.|++..
T Consensus       400 lV~G~~aa~~i~~~~~-~~Grs~~~~~~~~~e~~~~~~~~d~~~Lq~~~~~~~~~~w~~aGi~R~~~~  466 (546)
T TIGR00551       400 LVFGLRAARAISRKPP-AAGRSDESSSALWDEPRSETPDIDRAELQHKMSELRSLLWEAAGIVRLSES  466 (546)
T ss_pred             HHHHHHHHHHHHHHHH-HCCCCCHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             8732899999865355-336651002666554134237751456645766889999974014455789


No 105
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.36  E-value=8.7e-06  Score=60.63  Aligned_cols=150  Identities=17%  Similarity=0.261  Sum_probs=82.2

Q ss_pred             CCCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC--H-H-HHHHHHHHHHHHHH-HH--
Q ss_conf             9876-35788988942689999999858998999980762601246670022112--2-4-89999986303999-99--
Q gi|254780808|r    1 MINR-SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG--K-G-HLVREIDALDGLMG-RV--   72 (626)
Q Consensus         1 m~~~-~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a--k-g-~L~~Ei~aLgg~m~-~~--   72 (626)
                      |.++ +|||+|||||.+|+=+|+.|++.|++|.|+|.+..--..- =.|.+.+.+  . + .+.+++.....+-. ++  
T Consensus         1 m~~~~~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~-~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~p   79 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQA-DQPDLRVYAFAADNAALLDRLGVWPAVRAARVQP   79 (392)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf             999999988999906999999999986699789991789875556-8887369999889999999879816677516773


Q ss_pred             ------HHHH---HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCC
Q ss_conf             ------9886---314887307878555346787849999999999997089968980-010112025881132220358
Q gi|254780808|r   73 ------ADAA---GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDN  142 (626)
Q Consensus        73 ------aD~~---~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g  142 (626)
                            -|..   .++|..-...+.+-++    -+.+........+.+. .+++++.. .+|+++..+...+ .+.+.+|
T Consensus        80 ~~~~~v~d~~~~~~~~~~~~~~~~~~lg~----iv~~~~l~~~L~~~~~-~~~v~~~~~~~v~~~~~~~~~v-~v~~~dg  153 (392)
T PRK08773         80 YRRMRVWDAGGGGELGFDADTLGREQLGW----IVENDLLVDRLWAAVH-AAGIQLHCPARVVELEQDADGV-RLRLDDG  153 (392)
T ss_pred             EEEEEEEECCCCCEEEECHHHCCCCCCCC----EEEHHHHHHHHHHHHH-CCCCEEECCCEEEEEEECCCEE-EEEECCC
T ss_conf             13589984589834753656628545653----2254999999999986-0899897486899999669858-9997799


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             633445433346643
Q gi|254780808|r  143 SMIRCSTVVLTTGTF  157 (626)
Q Consensus       143 ~~~~~~~viiatGtf  157 (626)
                      ..+.++-+|.|-|..
T Consensus       154 ~~i~a~lvVgaDG~~  168 (392)
T PRK08773        154 SRLEAALAIAADGAA  168 (392)
T ss_pred             CEEEEEEEEECCCCC
T ss_conf             799988999837887


No 106
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.36  E-value=3.1e-06  Score=63.79  Aligned_cols=157  Identities=21%  Similarity=0.256  Sum_probs=83.1

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-------CCCCCC---CCC-----C----------------
Q ss_conf             876357889889426899999998589989999807626-------012466---700-----2----------------
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-------IGSMSC---NPA-----I----------------   50 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-------~ael~C---nps-----~----------------   50 (626)
                      |+.++||+|||||.+|+=+||.|++.|.+|.++|-..-.       -+.+.+   ++.     .                
T Consensus         1 ~~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   80 (387)
T COG0665           1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEE   80 (387)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99764399989869999999999976991999917988767667767777524235553033433799999999998875


Q ss_pred             ----------CCC-----C-------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC--CCCCCCC-HHHHHHHHHH
Q ss_conf             ----------211-----2-------248999998630399--99998863148873078--7855534-6787849999
Q gi|254780808|r   51 ----------GGL-----G-------KGHLVREIDALDGLM--GRVADAAGIQFRVLNVK--KGPAVRG-PRTQADRELY  103 (626)
Q Consensus        51 ----------gg~-----a-------kg~L~~Ei~aLgg~m--~~~aD~~~i~~r~ln~s--kGpAv~a-lraqvDR~~f  103 (626)
                                |.+     .       ..-...++++.+-.+  ....+...+ ...|+..  .| |.+. ..+++|=..|
T Consensus        81 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~~~~~~~-~~~~~~~~~~~p~~~  158 (387)
T COG0665          81 LGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAEL-EPALGPDFVCG-GLFDPTGGHLDPRLL  158 (387)
T ss_pred             CCCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-CCCCCCCCCEE-EEECCCCCEECHHHH
T ss_conf             3766445662429988446743256689999999860210011888787663-73337764334-598488834578999


Q ss_pred             HHHHHHHHHCCC-CCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             999999997089-96898001011202588113222035863344543334664310134
Q gi|254780808|r  104 RLAMQREILSQE-NLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI  162 (626)
Q Consensus       104 s~~vt~~l~~~p-ni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~  162 (626)
                      -+..-+.+.+.= -+.....+|.++..+. ...+|.|..|. +.+..||+|+|.......
T Consensus       159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~~-~~~~v~t~~g~-~~a~~vv~a~G~~~~~l~  216 (387)
T COG0665         159 TRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELA  216 (387)
T ss_pred             HHHHHHHHHHCCCCEEECCCCEEEEEECC-CEEEEEECCCE-EECCEEEECCCCCHHHHH
T ss_conf             99999999973991897235246776147-35899958970-981989999996435555


No 107
>PRK11728 hypothetical protein; Provisional
Probab=98.35  E-value=4.9e-06  Score=62.41  Aligned_cols=152  Identities=25%  Similarity=0.360  Sum_probs=87.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCC--C-CCC--CHHHH-------------------
Q ss_conf             35788988942689999999858--9989999807626012466700--2-211--22489-------------------
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPA--I-GGL--GKGHL-------------------   58 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~ael~Cnps--~-gg~--akg~L-------------------   58 (626)
                      .|||+|||||-+||=.|+.||++  |.+|.|+|...+--.+-+=.||  + .|+  ..|.|                   
T Consensus         2 ~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~~   81 (400)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH   81 (400)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             53099999679999999999955999839999689997563353242321564358999999999999999999999985


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC------CCCCHHH-HHHHHHHHHHHHHHHH
Q ss_conf             ---------------99998630399999988631488730787----85------5534678-7849999999999997
Q gi|254780808|r   59 ---------------VREIDALDGLMGRVADAAGIQFRVLNVKK----GP------AVRGPRT-QADRELYRLAMQREIL  112 (626)
Q Consensus        59 ---------------~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk----Gp------Av~alra-qvDR~~fs~~vt~~l~  112 (626)
                                     -.|+..|..++-+ +...++..++|+...    =|      |.|++.+ .||=..+.+..-+.+.
T Consensus        82 ~i~~~~~GkliVA~~~~e~~~L~~l~~~-~~~ngv~~~~l~~~ei~~~eP~v~~~~al~~p~tgivD~~~l~~al~~~a~  160 (400)
T PRK11728         82 GIPYEVCGKLLVATSELELERMEALYER-AAANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ  160 (400)
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHH-HHHCCCCEEEECHHHHHHHCCCCCCCCEEECCCCEEECHHHHHHHHHHHHH
T ss_conf             9992116869997799999999999999-985698628967999998688654323597687727789999999999999


Q ss_pred             CCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             0899689800101120258811322203586334454333466431
Q gi|254780808|r  113 SQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus       113 ~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                      ++-.--....+|+++...++.+ .+.|..+..+.|+.||-|.|...
T Consensus       161 ~~G~~i~~~~~V~~i~~~~~~~-~v~t~~~~~i~a~~vINaAGl~A  205 (400)
T PRK11728        161 ARGGEIRLGAEVTALDEHANGV-VVRTSQGGEFEARTLVNCAGLMS  205 (400)
T ss_pred             HCCCEEEECCEEEEEEEECCEE-EEEECCCCEEEEEEEEECCCHHH
T ss_conf             7898999278898999979999-99988998899718998666528


No 108
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.34  E-value=5.5e-06  Score=62.07  Aligned_cols=43  Identities=16%  Similarity=0.112  Sum_probs=37.3

Q ss_pred             HCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             03341566213-30433466666677899999874203345654
Q gi|254780808|r  358 KKISGLFLAGQ-INGTTGYEEAAAQGLVAGINSARKSNKLDCIC  400 (626)
Q Consensus       358 k~~~~LffAGQ-I~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~  400 (626)
                      ...||+|.||- .+|-.==++|.++|-.|+.+..++++|.+...
T Consensus       403 Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id~yL~G~~~~~  446 (560)
T PRK12771        403 TGRPGVFAGGDMVPGERTVTTAVGHGKKAARHIDAFLRGEHPPK  446 (560)
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             79988674365466841899999999999999999966898766


No 109
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34  E-value=8.2e-07  Score=67.92  Aligned_cols=146  Identities=22%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-H---HHCCCCCC--CCCC--CCCCHHHHH----------------
Q ss_conf             6357889889426899999998589989999807-6---26012466--7002--211224899----------------
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK-T---STIGSMSC--NPAI--GGLGKGHLV----------------   59 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~-~---~~~ael~C--nps~--gg~akg~L~----------------   59 (626)
                      -.+||+|||||-|||-||+.+++.|.+|++++.- +   ..++.=.|  ||++  |-.-.-..+                
T Consensus        12 ~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ikRSGaiAaGmdalNaav~pG~~~PE~yv~~~tk~~DgIvdqd~v   91 (894)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRTV   91 (894)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf             37787998897268899999760699589985456665205765345787513778798889999998723664038999


Q ss_pred             -----------HHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCC---CCCEEE-H
Q ss_conf             -----------999863039999998863--148873078785553467878-4999999999999708---996898-0
Q gi|254780808|r   60 -----------REIDALDGLMGRVADAAG--IQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQ---ENLDVI-Q  121 (626)
Q Consensus        60 -----------~Ei~aLgg~m~~~aD~~~--i~~r~ln~skGpAv~alraqv-DR~~fs~~vt~~l~~~---pni~i~-~  121 (626)
                                 .||+.+|=.+-+  |+.+  .+-|+    + +++.-... + +=+.-+..+-+.|..+   .+|.|. +
T Consensus        92 ~~~a~~~~~vv~eLE~~Gl~F~K--DenG~y~~Rrv----h-~~G~~~l~-mp~Ge~iK~iL~r~L~~~~~r~~V~v~Nr  163 (894)
T PRK13800         92 YQTATRGFAMVQRLERYGVKFEK--DEHGEYAVRRV----H-RSGSYVLP-MPEGKDVKKALYRVLRQRSMRERIRIENR  163 (894)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEE--CCCCCCHHEEC----C-CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             99997768999999975984036--89878601020----4-57851123-64433557999999998632006089743


Q ss_pred             HHHCCCCCCCCCEEEEE-----ECCCCCCCCCCCCCCCCCC
Q ss_conf             01011202588113222-----0358633445433346643
Q gi|254780808|r  122 GEVAGFNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus       122 ~eV~~l~~~~~~~~~v~-----~~~g~~~~~~~viiatGtf  157 (626)
                      -.+++|+.+++++.|+.     +..-..+.+|+||+|||-.
T Consensus       164 v~~t~lLt~dGrv~Ga~gf~irtGe~~virAKAVIlATGga  204 (894)
T PRK13800        164 LMPVRVLTAGGRAVGAAALNTRTGEFVTVGAKAVILATGPC  204 (894)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEECCEEEEECCCC
T ss_conf             45789971388388888860356638999727799903655


No 110
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.33  E-value=5.1e-07  Score=69.40  Aligned_cols=146  Identities=21%  Similarity=0.275  Sum_probs=91.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------------------HHC-CCCC--CC--------------
Q ss_conf             578898894268999999985899899998076---------------------260-1246--67--------------
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------------------STI-GSMS--CN--------------   47 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------------------~~~-ael~--Cn--------------   47 (626)
                      |||||||||--||-|||+|||+|.+|+|+|.--                     |++ -.|+  |.              
T Consensus         1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~   80 (401)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKL   80 (401)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             95799817613568999987538617887515677678887877100010267863578899999999999862147264


Q ss_pred             --CC---CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------------CCCCCHHHHHHHHH
Q ss_conf             --00---2211224-89999986303999999886314887307878-------------------55534678784999
Q gi|254780808|r   48 --PA---IGGLGKG-HLVREIDALDGLMGRVADAAGIQFRVLNVKKG-------------------PAVRGPRTQADREL  102 (626)
Q Consensus        48 --ps---~gg~akg-~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skG-------------------pAv~alraqvDR~~  102 (626)
                        +.   +=|+.-+ +-+.++       ..++.+.+|.+++|....=                   +.++-+-+    +.
T Consensus        81 h~qT~~l~~G~k~~s~~l~~~-------~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g~~~~~gGvl~~----~k  149 (401)
T TIGR01377        81 HRQTGLLLLGPKENSQSLKTI-------VATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVGLLDELGGVLYA----EK  149 (401)
T ss_pred             ECCCCEEEECCCCCCHHHHHH-------HHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEEEEECCCCEECH----HH
T ss_conf             313451563157786058999-------9988625523033164123200476234068607887468874622----78


Q ss_pred             HHHHHHHHHHCCCCCEEEHHHHCCCCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHH
Q ss_conf             9999999997089968980010112025---88113222035863344543334664310-1344
Q gi|254780808|r  103 YRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQDNSMIRCSTVVLTTGTFLR-GVIH  163 (626)
Q Consensus       103 fs~~vt~~l~~~pni~i~~~eV~~l~~~---~~~~~~v~~~~g~~~~~~~viiatGtfl~-g~~~  163 (626)
                      =-++.++.+..|=.|-.-..-|.+|..+   .+.++.|+ .....+.++.+|||.|+-.+ -+++
T Consensus       150 a~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~k-t~~~sy~a~~lvvtaGaW~s~kLl~  213 (401)
T TIGR01377       150 ALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVK-TTKDSYQAKKLVVTAGAWTSNKLLK  213 (401)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEE-EECCEEECCEEEEECCCCHHHHHCC
T ss_conf             999999999874968734860366542676789548999-7277032135789538861234313


No 111
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.32  E-value=1.9e-06  Score=65.32  Aligned_cols=132  Identities=24%  Similarity=0.322  Sum_probs=80.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3578898894268999999985899899998076260124667002211--22489999986303999999886314887
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGHLVREIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~--akg~L~~Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      +-||+|||||-||--|||.||+.|+||+++|.++          |+||=  +-|+|.-+|-.- ...-..-|+-+|.|+-
T Consensus        17 e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~l----------s~GGG~WgGGmlfn~ivv~-~~a~~iLde~gi~y~~   85 (229)
T pfam01946        17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSL----------SPGGGAWGGGMLFSAMVVR-KPADEFLDEFGIRYED   85 (229)
T ss_pred             HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCC----------CCCCCCCCCCCCCCCEEEC-CHHHHHHHHCCCCCEE
T ss_conf             2688998878179999999987898599996452----------6888620201225633764-1389999974995276


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCC-----------CCCCCC
Q ss_conf             3078785553467878499999999999970899689800-1011202588113222035863-----------344543
Q gi|254780808|r   83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSM-----------IRCSTV  150 (626)
Q Consensus        83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~-----------~~~~~v  150 (626)
                             ..-.+-. +|--.|.......... +|..+... .|+|+...++++.||.+.....           +.|+.|
T Consensus        86 -------~~~g~~v-~ds~~~~s~L~s~a~~-aGakifn~~~VEDli~r~~rV~GvViNWt~V~~~g~hvDP~~i~ak~V  156 (229)
T pfam01946        86 -------EGDYVVV-ADAAEFTSTLASKALQ-PGVKIFNATSVEDLIIRDNRVAGVVTNWTLVEMAGLHMDPLTIRAKAV  156 (229)
T ss_pred             -------CCCCEEE-ECHHHHHHHHHHHHHC-CCCEEEECCEEEEEEEECCCEEEEEEEEEHHHHCCCCCCCCCCCCEEE
T ss_conf             -------4796699-4499999999999767-898998244888899967927999984114444367558421100179


Q ss_pred             CCCCCC
Q ss_conf             334664
Q gi|254780808|r  151 VLTTGT  156 (626)
Q Consensus       151 iiatGt  156 (626)
                      |-+||.
T Consensus       157 vDaTGH  162 (229)
T pfam01946       157 VDATGH  162 (229)
T ss_pred             EECCCC
T ss_conf             866889


No 112
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.32  E-value=1e-06  Score=67.32  Aligned_cols=63  Identities=14%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             84999999999999708996898-001011202588113222035863344543334664310134
Q gi|254780808|r   98 ADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI  162 (626)
Q Consensus        98 vDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~  162 (626)
                      +|=..|...+.+.+..+ +.+++ ..+|++|..+++.+.+|.|..| .+.|..||+|+|......+
T Consensus       198 ~d~~~~~~~l~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~V~t~~g-~i~ad~vV~AaGaws~~l~  261 (416)
T PRK00711        198 GDCQLFTQRLAALAEQL-GVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALL  261 (416)
T ss_pred             ECHHHHHHHHHHHHHHC-CCCCCCCCCEEEEEEECCEEEEEECCCC-EEEEEEEEEECCHHHHHHH
T ss_conf             66799999999999853-8862002315899984998998853895-5750169993374369999


No 113
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.31  E-value=3.9e-06  Score=63.09  Aligned_cols=155  Identities=26%  Similarity=0.339  Sum_probs=81.9

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH------CCCCC---------------------------CC
Q ss_conf             9876357889889426899999998589989999807626------01246---------------------------67
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST------IGSMS---------------------------CN   47 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~------~ael~---------------------------Cn   47 (626)
                      |.+.+|||+|||||-.|+=.|..+|.+|.+|.|+||+-=.      .--|+                           |-
T Consensus         8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A   87 (532)
T COG0578           8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA   87 (532)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf             43357778998986546999999986798499995476567666763457554166653065479999999999999758


Q ss_pred             CCCC----CC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC---------CCCCHHHH
Q ss_conf             0022----11-------------2248999998630399999988631488730787----85---------55346787
Q gi|254780808|r   48 PAIG----GL-------------GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK----GP---------AVRGPRTQ   97 (626)
Q Consensus        48 ps~g----g~-------------akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk----Gp---------Av~alraq   97 (626)
                      |.+.    +.             ..|+..  =|.|+|.--...     -.|.++...    -|         |++=+-.+
T Consensus        88 PH~v~p~~~~lp~~~~~~~~~~~~~gl~l--yd~lag~~~~~p-----~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~  160 (532)
T COG0578          88 PHLVEPLPFLLPHLPGLRDAWLIRAGLFL--YDHLAGIRKLLP-----ASRVLDPKEALPLEPALKKDGLKGAFRYPDGV  160 (532)
T ss_pred             CCCCCCCCCEEECCCCCCCCHHHHHHHHH--HHHHHCCCCCCC-----CCEECCHHHHHHCCCCCCHHCCCCEEEECCCE
T ss_conf             66113686758636886522478868999--987625123587-----43311655520028654620045419970635


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC-----CCCCCCCCCCCCCCCHHHHH
Q ss_conf             8499999999999970899689800101120258811322203586-----33445433346643101344
Q gi|254780808|r   98 ADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS-----MIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus        98 vDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~-----~~~~~~viiatGtfl~g~~~  163 (626)
                      +|=..+...+-..-..+=-.-+-..+|+.+..+++ +.||...+..     .+.++.||-||||+....+.
T Consensus       161 vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~  230 (532)
T COG0578         161 VDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE  230 (532)
T ss_pred             ECHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCC-EEEEEEEECCCCCEEEEECCEEEECCCCCHHHHHH
T ss_conf             24688999999999965301230461534554087-78999971578827998837799898701899987


No 114
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=98.31  E-value=9.5e-07  Score=67.47  Aligned_cols=130  Identities=26%  Similarity=0.390  Sum_probs=79.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3578898894268999999985899899998076-260-12466700221122489999986303999999886314887
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STI-GSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~-ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      .|||+|||||-+|==||--+|++|.||+|+|.+- -.. ==-=|=||==-+..+++..+++-       -+|..+|.   
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h-------~a~~~Gi~---   70 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKH-------KAKDLGIE---   70 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHH-------HHHHCCEE---
T ss_conf             95189987787727999999864980899980356874872776754788776678999998-------89867803---


Q ss_pred             HCCCCCCCCCCHHHHHHHHHH-----------HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC---CCCCC
Q ss_conf             307878555346787849999-----------9999999970899689800101120258811322203586---33445
Q gi|254780808|r   83 LNVKKGPAVRGPRTQADRELY-----------RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS---MIRCS  148 (626)
Q Consensus        83 ln~skGpAv~alraqvDR~~f-----------s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~---~~~~~  148 (626)
                         ..| .     +.+|-..-           ..-|.-.|.++ .|+++.++..=+.   ...+.|....+.   .+.++
T Consensus        71 ---~~~-~-----v~~d~~~~~~rK~~VV~~L~~Gv~~Llkkn-Kv~v~~G~a~~~~---~~~v~V~~~~~~~~~~~~~k  137 (481)
T TIGR01350        71 ---VEN-N-----VSVDWEKMQERKNKVVKKLVGGVKGLLKKN-KVTVIKGEAKFLD---PNTVSVTGENGEEEETLEAK  137 (481)
T ss_pred             ---ECC-E-----EEECHHHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEEEEEC---CCEEEEECCCCCEEEEEEEE
T ss_conf             ---367-1-----267589999998898754246789886306-8059999999985---85899835655311478740


Q ss_pred             CCCCCCCCC
Q ss_conf             433346643
Q gi|254780808|r  149 TVVLTTGTF  157 (626)
Q Consensus       149 ~viiatGtf  157 (626)
                      .+|||||.-
T Consensus       138 ~~iiATGS~  146 (481)
T TIGR01350       138 NIIIATGSR  146 (481)
T ss_pred             EEEEECCCC
T ss_conf             379933860


No 115
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.30  E-value=6.5e-06  Score=61.56  Aligned_cols=132  Identities=23%  Similarity=0.331  Sum_probs=81.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3578898894268999999985899899998076260124667002211--22489999986303999999886314887
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL--GKGHLVREIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~--akg~L~~Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      .-||+|||||-||--|||.||+.|+||+++|.          ++|+||=  +-|+|..+|-.= ...-..-|+-+|.|+-
T Consensus        25 e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~----------~ls~GGG~WgGGmlf~~iVv~-~~a~~iLde~gi~y~~   93 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER----------KLSFGGGIWGGGMLFNKIVVQ-EEADEILDEFGIRYKE   93 (257)
T ss_pred             HCCEEEECCCCHHHHHHHHHHHCCCEEEEEEC----------CCCCCCCCCCHHHHCCHHHHC-CHHHHHHHHCCCCCEE
T ss_conf             06889988882799999999868965999971----------346888631300013345400-5379999984997333


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCC-CCCEEEEEECCCC-----------CCCCCC
Q ss_conf             3078785553467878499999999999970899689800-10112025-8811322203586-----------334454
Q gi|254780808|r   83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTE-KNIISSIVMQDNS-----------MIRCST  149 (626)
Q Consensus        83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~-~~~~~~v~~~~g~-----------~~~~~~  149 (626)
                             ..-.+-. +|--.|.......... +|..+... .|.|+... ++++.||.+.+..           .+.|+.
T Consensus        94 -------~~~g~~v-~d~~~~~s~L~~~a~~-aGakifn~~~VEDli~r~~~rV~GvV~NWt~V~~~glhvDP~~i~ak~  164 (257)
T PRK04176         94 -------VEDGLYV-ADSVEAAAKLAAGAID-AGAKIFNGVSVEDVIIREDGRVAGVVINWTPVEMAGLHVDPLTIEAKA  164 (257)
T ss_pred             -------CCCCEEE-ECHHHHHHHHHHHHHH-CCCEEEECCEEEEEEEECCCCEEEEEECCHHHHHHCCCCCCCEECCCE
T ss_conf             -------5896399-5089999999999974-798898230442156612881789996257756403555852011368


Q ss_pred             CCCCCCC
Q ss_conf             3334664
Q gi|254780808|r  150 VVLTTGT  156 (626)
Q Consensus       150 viiatGt  156 (626)
                      ||-+||-
T Consensus       165 VvdaTGH  171 (257)
T PRK04176        165 VVDATGH  171 (257)
T ss_pred             EEECCCC
T ss_conf             9988898


No 116
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.30  E-value=5.9e-06  Score=61.81  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             78898894268999999985899899998076
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      ||+|||||..|+=+||.|+|+|.+|++++-..
T Consensus         3 ~V~VIGaGivGlstA~~La~~G~~VtviDr~~   34 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             59998983999999999997899189996989


No 117
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29  E-value=5.7e-06  Score=61.94  Aligned_cols=146  Identities=16%  Similarity=0.263  Sum_probs=79.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             5788988942689999999858998999980762601246670022112----24899999863039999998863148-
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG----KGHLVREIDALDGLMGRVADAAGIQF-   80 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a----kg~L~~Ei~aLgg~m~~~aD~~~i~~-   80 (626)
                      -||+|||||++|+=+|+.+|+.|++|.|+|.+...-.+..-+  ....|    --.+..++.....+-..+.--..++. 
T Consensus         2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~~~~~~~~~d--~R~~als~~s~~~L~~lgiw~~l~~~~~~~~~i~v~   79 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKD--IRTTALTPHSKNFLFSIDIWEELEKFVAEMQDVYVV   79 (374)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--CCEEEECHHHHHHHHHCCCCHHHHHHHHCCEEEEEE
T ss_conf             629999966999999999985799699997899788665799--634674698999999869848678864231899997


Q ss_pred             -----HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             -----873078785553467878499999999999970899689800-10112025881132220358633445433346
Q gi|254780808|r   81 -----RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT  154 (626)
Q Consensus        81 -----r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiat  154 (626)
                           ..+... ......+.--+.+..+.+...+.+.++|+++++.. ++.++...++.  .+...++..+.++-+|.|.
T Consensus        80 d~~~~~~~~~~-~~~~~~lgyii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~llIgaD  156 (374)
T PRK06617         80 DNKASEILDLR-NDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDKQIKCNLLIICD  156 (374)
T ss_pred             CCCCCCEEECC-CCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCC--EEEECCCCEEEEEEEEEEC
T ss_conf             58988536424-56765434652138999999999964999489757511466527882--6996389678535899957


Q ss_pred             CC
Q ss_conf             64
Q gi|254780808|r  155 GT  156 (626)
Q Consensus       155 Gt  156 (626)
                      |.
T Consensus       157 G~  158 (374)
T PRK06617        157 GA  158 (374)
T ss_pred             CC
T ss_conf             98


No 118
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28  E-value=4.8e-07  Score=69.56  Aligned_cols=104  Identities=18%  Similarity=0.328  Sum_probs=69.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788988942689999999858---99899998076260124667002211224899999863039999998863148873
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL   83 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~---G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l   83 (626)
                      .|+|||||+||..+|..+++.   +++++|++.++...    .+|.+=+.+           +|.+              
T Consensus         1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~----y~~~lp~~~-----------~g~~--------------   51 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP----YSGMLPGMI-----------AGHY--------------   51 (364)
T ss_pred             CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCE----ECCHHHHHH-----------HCCC--------------
T ss_conf             99999960999999999704178998399999988651----625169997-----------4047--------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r   84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                                     +.+.-+....+. ....++++++++|++|+.++..   |.+.+|..+.=...|+|||.-.
T Consensus        52 ---------------~~~~i~~~~~~~-~~~~gv~~i~~~V~~ID~~~k~---V~~~~g~~l~YD~LViAtGs~~  107 (364)
T TIGR03169        52 ---------------SLDEIRIDLRRL-ARQAGARFVIAEATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             ---------------CHHHEECCHHHH-HHHCCCEEEEEEEEEEECCCCE---EEECCCCEEECCEEEEECCCCC
T ss_conf             ---------------799922168999-9777949996378999768898---9988998873688999436777


No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982    Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=98.25  E-value=4.3e-06  Score=62.80  Aligned_cols=300  Identities=19%  Similarity=0.211  Sum_probs=146.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             578898894268999999985899899998-0762-60124667002211224899999863039999998863148873
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL   83 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~-~~~~-~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l   83 (626)
                      |||||||||-||-=||.-++|.+++++|+| +.|. .=|+|.-.+.|=                                
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vE--------------------------------   48 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVE--------------------------------   48 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEE--------------------------------
T ss_conf             928998478678889999887467278983577774555333220651--------------------------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCC----CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             07878555346787849999999999997089968980-01011202588----11322203586334454333466431
Q gi|254780808|r   84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~----~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                      |.   |-..-.   +-=..+.+.|++-..+- ..+++- ++|..+...+.    .+--+.|.  .++.|++||+|||.--
T Consensus        49 NY---PGf~e~---i~G~~L~~~M~~Qa~~f-G~~~~~G~~v~~v~~~~~~yE~~~F~~~~~--~~y~a~avIiAtGa~~  119 (321)
T TIGR01292        49 NY---PGFPEG---ISGPELMEKMKEQAKKF-GAEIIYGEEVIRVDKSDRAYESDPFKVKTG--KEYTAKAVIIATGAEA  119 (321)
T ss_pred             CC---CCCCCC---CCHHHHHHHHHHHHHHC-CCCEEECCEEEEEECCCCCCCCCEEEEEEC--CEEEEEEEEEECCCHH
T ss_conf             36---868887---66288999999999870-673662670568633788436610389717--5688658999138715


Q ss_pred             HHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHH---HHHCCCCCCCCCCCCCCCCCC
Q ss_conf             0134443202332224-751113310000101120054444544101100001344---321147876687774356578
Q gi|254780808|r  159 RGVIHIGKLKIPAGRM-GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK---TEKQFADERLIPFSFMTDKIT  234 (626)
Q Consensus       159 ~g~~~~g~~~~~~gr~-~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~---~e~q~~d~~~~~~s~~~~~~~  234 (626)
                      +-          .|-. ||....+=.-           -+.+||   |+.+--|..   .-.--+|.             
T Consensus       120 r~----------lg~~kGE~ef~GrGV-----------SyCA~C---DGA~~ffk~K~V~VvGGGds-------------  162 (321)
T TIGR01292       120 RK----------LGIPKGEDEFLGRGV-----------SYCATC---DGASPFFKNKEVAVVGGGDS-------------  162 (321)
T ss_pred             HH----------CCCCCCHHHHCCCCE-----------EEEEHH---CCCCHHHCCCEEEEECCCCH-------------
T ss_conf             42----------378866455326866-----------672231---05401205988999879824-------------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCC-CCCCCCCEEE-ECCCCCCEEEE
Q ss_conf             00000000123200147776402457541443235642-----22553212335676-4334520130-15787764543
Q gi|254780808|r  235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP-----RYCPSIEDKIVRFG-ERNGHQIFLE-PEGLNTDVVYP  307 (626)
Q Consensus       235 ~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gp-----rycPsie~k~~~~~-~~p~h~VqLr-pE~~~~~~~n~  307 (626)
                      .-|...|++.-..+.+-+-|.+..+.....-+....-|     =...+....+..-. .+=.- |-|. -.+-+.+++.+
T Consensus       163 A~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~-v~i~N~~t~e~~~l~v  241 (321)
T TIGR01292       163 ALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVES-VKIKNTVTGEEEELKV  241 (321)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEE-EEEEECCCCEEEEEEE
T ss_conf             888889998538767999779863632899989983789878996486899996178315533-5899623884889984


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH---HHHHHHHHH
Q ss_conf             47766689889999998754340010011000121102354565677654033415662133043346---666667789
Q gi|254780808|r  308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY---EEAAAQGLV  384 (626)
Q Consensus       308 vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY---eEAAAqGl~  384 (626)
                      .|+--.+=+.-..++|.-.   -+.+.-..||-+=    +-.+ -.|.+|. +||+|-||=|..-=+|   +=||++|.+
T Consensus       242 dGvF~aIG~~P~t~~~~~~---G~~~~D~~GyI~t----~~~~-Gn~~~Ts-v~GvFAAGDv~~kW~~rQ~vTAag~G~~  312 (321)
T TIGR01292       242 DGVFIAIGHEPNTELLKGL---GLLELDEGGYIVT----DEGL-GNTMRTS-VPGVFAAGDVRDKWGFRQAVTAAGDGCI  312 (321)
T ss_pred             CEEEEEECCCCCHHHHHCC---CCEEECCCCCEEE----CCCC-CCEEECC-CCCEEEEEEEECCCCCEEEEEEECHHHH
T ss_conf             4478984120320576507---8346769986886----1754-8612306-6868973044068861376787000689


Q ss_pred             HHHHHHHHC
Q ss_conf             999987420
Q gi|254780808|r  385 AGINSARKS  393 (626)
Q Consensus       385 AGiNa~~~~  393 (626)
                      |...|.+++
T Consensus       313 AA~~a~~yL  321 (321)
T TIGR01292       313 AALSAERYL  321 (321)
T ss_pred             HHHHHHHHC
T ss_conf             999998709


No 120
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.25  E-value=5e-06  Score=62.34  Aligned_cols=135  Identities=24%  Similarity=0.343  Sum_probs=69.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             78898894268999999985899899998076--2601246670022112248999998630399999988631488730
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN   84 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln   84 (626)
                      .|+|||||-||..||..+|+.|.+|+|+|-..  -++----|-||     |.++-. -+.. ..+ +-++..++.  + +
T Consensus         2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~GGtCln~GCiPs-----K~ll~~-a~~~-~~~-~~~~~~Gi~--~-~   70 (458)
T PRK06912          2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEADLGGTCLNEGCMPT-----KSLLES-AEVH-DIV-RKANHYGIT--L-N   70 (458)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHH-----HHHHHH-HHHH-HHH-HHHHHCCCC--C-C
T ss_conf             499990088999999999978595999958997874033684878-----999999-9999-999-766745950--1-2


Q ss_pred             CCCCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCCC
Q ss_conf             7878555346787849999----999999997089968980010112025881132220358-633445433346643
Q gi|254780808|r   85 VKKGPAVRGPRTQADRELY----RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDN-SMIRCSTVVLTTGTF  157 (626)
Q Consensus        85 ~skGpAv~alraqvDR~~f----s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g-~~~~~~~viiatGtf  157 (626)
                       ...+.+.-...+.-++.+    ++.+...++ ..++++++++..=.  ++.. ..|....+ ..+.++.+|||||.-
T Consensus        71 -~~~~~id~~~~~~~~~~~v~~~~~~~~~~l~-~~~v~~i~G~a~f~--~~~~-v~V~~~~~~~~i~a~~iiIATGs~  143 (458)
T PRK06912         71 -NGSISIDWKQMQARKSQIVTQLVQGIQYLMK-KNKIKVIQGKASFE--TDHR-VRVEYGGKEEVVDAEQFIIATGSE  143 (458)
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEECEEEEE--CCCE-EEEECCCCEEEEEEEEEEECCCCC
T ss_conf             -7875528999999999999999999999997-38918991527980--3886-899869961899741899988987


No 121
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.23  E-value=1.6e-05  Score=58.79  Aligned_cols=350  Identities=23%  Similarity=0.235  Sum_probs=168.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHC-----CCCEEEEECCHHH----C-------C----CCCCCCCCC--CC---C-
Q ss_conf             987635788988942689999999858-----9989999807626----0-------1----246670022--11---2-
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKL-----GASTALITHKTST----I-------G----SMSCNPAIG--GL---G-   54 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~-----G~~v~L~~~~~~~----~-------a----el~Cnps~g--g~---a-   54 (626)
                      +|++.|||++||||-||+=||+-+|..     ..++.++++-.+.    +       +    --+|+=.+|  |-   + 
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~   93 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSD   93 (486)
T ss_pred             HHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             76510255897777267899999853213477328999980255554226644555211678997405763266331124


Q ss_pred             --------HHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHCCCCCC-CC-CC-HHHHHHHHH------------------
Q ss_conf             --------248999998-6303--9999998863148873078785-55-34-678784999------------------
Q gi|254780808|r   55 --------KGHLVREID-ALDG--LMGRVADAAGIQFRVLNVKKGP-AV-RG-PRTQADREL------------------  102 (626)
Q Consensus        55 --------kg~L~~Ei~-aLgg--~m~~~aD~~~i~~r~ln~skGp-Av-~a-lraqvDR~~------------------  102 (626)
                              .|.-++|.- --..  .-+.-.|++-+||--      | |+ -. +.-|+--..                  
T Consensus        94 g~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~------~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHi  167 (486)
T COG2509          94 GILNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGA------PGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHI  167 (486)
T ss_pred             CCEECCCCCCCCHHHHHCCHHHHHHHHHCCCHHHEECCC------CCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             202025666610454517858888887134165410379------86744478456666799997099960561246515


Q ss_pred             -------HHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC----C
Q ss_conf             -------99999999970899689800101120258811322203586334454333466431013444320233----2
Q gi|254780808|r  103 -------YRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIP----A  171 (626)
Q Consensus       103 -------fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~----~  171 (626)
                             --+.|++.|++--.=-..+-+|.||..+++.+.+|.+..|..+.++.||+|.|---+.-+..-..+..    .
T Consensus       168 GTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~  247 (486)
T COG2509         168 GTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRA  247 (486)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEECCCCCEEECCEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             75206999999999998558289952078899815870799992578487327799904764678999999862941124


Q ss_pred             CCC-----CCCCCCCCCCHHHHHHH-HCCCCCC----------CCCCHH---HHCHHH-HHHHHHCCCCCCCCCCCCCCC
Q ss_conf             224-----75111331000010112-0054444----------544101---100001-344321147876687774356
Q gi|254780808|r  172 GRM-----GDSPSNSLFNSFMKFDF-DTGRLKT----------GTPARL---DGKTII-WDKTEKQFADERLIPFSFMTD  231 (626)
Q Consensus       172 gr~-----~~~~s~~ls~~l~~~~~-~~~r~kt----------gtppri---~~~sid-f~~~e~q~~d~~~~~~s~~~~  231 (626)
                      ++.     .|.+...+.+.- ++++ ..-+++|          ++||+=   ...|-+ |.         .-.-+||...
T Consensus       248 ~p~dIGVRvE~p~~vmd~~~-~~~~~~k~~~~t~k~~~~VrtFCmcP~G~VV~e~~e~g~~---------~vNG~S~~~r  317 (486)
T COG2509         248 KPFDIGVRVEHPQSVMDPHT-RLGAAPKFLYYTKKYGDGVRTFCMCPGGEVVAENYEDGFV---------VVNGHSYYAR  317 (486)
T ss_pred             CCEEEEEEEECCHHHHCCCC-CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEE---------EECCCCHHCC
T ss_conf             77068999853267507551-0134641578831579867898988997698564148668---------7756102012


Q ss_pred             CCCC--CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CCCC-CC--
Q ss_conf             5780--00000001232001477764024575414432356422255321233567---------------6433-45--
Q gi|254780808|r  232 KITN--RQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRF---------------GERN-GH--  291 (626)
Q Consensus       232 ~~~~--~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~---------------~~~p-~h--  291 (626)
                      .-.+  ..+...+..|                    .....|-.|..+++..-...               +.|. |+  
T Consensus       318 ~s~NtNfAllV~i~~t--------------------ep~~~~~ey~r~ia~lA~~lgGg~~i~Q~~gDf~~gRrSt~~ri  377 (486)
T COG2509         318 KSENTNFALLVTIEFT--------------------EPFEDGIEYGRSIARLATTLGGGKAIIQRVGDFLKGRRSTWSRI  377 (486)
T ss_pred             CCCCCCEEEEEECCCC--------------------CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf             3567633799844535--------------------78776579999999998875289615777668875886768885


Q ss_pred             -CCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCH--------HHHCCCC-HHHHHHHHHHHCCC
Q ss_conf             -2013015787764543477666898899999987543400100110001--------2110235-45656776540334
Q gi|254780808|r  292 -QIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYA--------IEYDYIN-PKELFPTLETKKIS  361 (626)
Q Consensus       292 -~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~--------ieyd~~~-P~~L~~tLe~k~~~  361 (626)
                       -++..|-=..   +-+--++-.||+-+-..+.-+|+.|.+   +=||++        +|--|.+ --..+.. +.-.++
T Consensus       378 ~~~~v~PTlk~---v~pgDls~~lP~~v~~~iiE~le~ldk---~ipG~as~dtlLygvE~k~ys~ri~~d~~-~~t~i~  450 (486)
T COG2509         378 GRVFVEPTLKP---VTPGDLSLALPDRVVEDLIEALENLDK---VIPGVASDDTLLYGVETKFYSVRIKVDED-LSTSIK  450 (486)
T ss_pred             HCCCCCCCCCC---CCCCCHHHHCCHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEEEEEEEEEEEECCC-CEEEEC
T ss_conf             12466645244---544725553877899999999997640---38774265642661035666666761620-122023


Q ss_pred             EEEEEEEEECCCH-HHHHHHHHHHHHHHHHHHC
Q ss_conf             1566213304334-6666667789999987420
Q gi|254780808|r  362 GLFLAGQINGTTG-YEEAAAQGLVAGINSARKS  393 (626)
Q Consensus       362 ~LffAGQI~GteG-YeEAAAqGl~AGiNa~~~~  393 (626)
                      |||-||-=.|.+| -.-|||.|++|+--.+++.
T Consensus       451 gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~  483 (486)
T COG2509         451 GLYPAGDGAGLARGIVSAAADGIKAAEGIARKY  483 (486)
T ss_pred             CEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             447765655521125787610289999999986


No 122
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.23  E-value=6.5e-06  Score=61.54  Aligned_cols=147  Identities=14%  Similarity=0.257  Sum_probs=81.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCCCCCCCCCCHHHHHHHHHHHHH---HHHH-HHHHH
Q ss_conf             357889889426899999998589989999807626012----466700221122489999986303---9999-99886
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS----MSCNPAIGGLGKGHLVREIDALDG---LMGR-VADAA   76 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae----l~Cnps~gg~akg~L~~Ei~aLgg---~m~~-~aD~~   76 (626)
                      ++||+|||||.+|+=+|+.+++.|++|.|+|.+|.....    .+-.|-.-.+..+ =++-++.||-   +..+ +..-.
T Consensus         2 ~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~-s~~~L~~lG~~~~l~~~~~~p~~   80 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPFDPQAPFEPRVSALSAA-SQRILERLGAWDGIAARRASPYS   80 (405)
T ss_pred             CCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHH-HHHHHHHCCCHHHHHHHCCCCEE
T ss_conf             98899999059999999999618997899958997778776677898425567799-89999987981656873577612


Q ss_pred             HHHHHHHCC-CCC--------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             314887307-878--------55534678784999999999999708996898-00101120258811322203586334
Q gi|254780808|r   77 GIQFRVLNV-KKG--------PAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIR  146 (626)
Q Consensus        77 ~i~~r~ln~-skG--------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~  146 (626)
                      .+  ++-+. +.|        .....+..-++.........+.+.+ .++++. ..+|+++...+.. +.+.+.+|..+.
T Consensus        81 ~~--~v~d~~~~~~~~f~~~~~~~~~lg~vv~~~~l~~~L~~~l~~-~~v~~~~~~~v~~~~~~~~~-~~v~l~~g~~i~  156 (405)
T PRK05714         81 DM--QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHD-SDIGLLANARLEQMRRSGDD-WLLTLADGRQLR  156 (405)
T ss_pred             EE--EEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCE-EEEEECCCCEEE
T ss_conf             45--520589862276441014764441123269999999999972-79889848789999983880-799967997986


Q ss_pred             CCCCCCCCCC
Q ss_conf             4543334664
Q gi|254780808|r  147 CSTVVLTTGT  156 (626)
Q Consensus       147 ~~~viiatGt  156 (626)
                      ++-+|.|-|.
T Consensus       157 a~llVgADG~  166 (405)
T PRK05714        157 APLVVAADGA  166 (405)
T ss_pred             CCEEEECCCC
T ss_conf             3889995899


No 123
>PRK06834 hypothetical protein; Provisional
Probab=98.23  E-value=3.7e-06  Score=63.29  Aligned_cols=139  Identities=17%  Similarity=0.240  Sum_probs=78.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHH------
Q ss_conf             63578898894268999999985899899998076260124667002211224899999---863039999998------
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREI---DALDGLMGRVAD------   74 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei---~aLgg~m~~~aD------   74 (626)
                      .+|||+|||||.+|.-+|+.||+.|++|.++|.+++.--   -.|    -|.++-.+-|   +.+| +.-++..      
T Consensus         2 ~~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~---~~~----RA~~l~~rt~eil~~~G-l~d~~~~~g~~~~   73 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQEL---VGS----RAGGLHARTLEVLDQRG-IVDRFLAEGQVAQ   73 (488)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC---CCC----CEEEECHHHHHHHHHCC-CHHHHHHCCCCCC
T ss_conf             989899989388999999999976999999968999877---698----48477899999999879-9899984265211


Q ss_pred             ---HHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             ---8631488730-7878555346787849999999999997089968980-0101120258811322203586334454
Q gi|254780808|r   75 ---AAGIQFRVLN-VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCST  149 (626)
Q Consensus        75 ---~~~i~~r~ln-~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~  149 (626)
                         ...+.+.+-. .+..|.+..+    .-..+.+...+.++.++ +++.. -||+++..++..+ .+.+.++..+.|+-
T Consensus        74 ~~~~~~~~~~~~~~p~~~~~~~~~----~Q~~lE~iL~~~l~~~~-~~v~~g~~v~~~~~~~~gV-~v~~~dg~ti~a~y  147 (488)
T PRK06834         74 VTGFAQIRLDISDFPTRHNYGLAL----RQNHIERILAEWVGELG-VPIYRGREVTGFTQDDTGV-DVELSDGSTLRAQY  147 (488)
T ss_pred             CCCCCCEECCHHHCCCCCCCEEEE----EHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEE-EEEECCCCEEEEEE
T ss_conf             124012025676587777837885----48999999999998589-9798088899999839968-99988982798758


Q ss_pred             CCCCCCC
Q ss_conf             3334664
Q gi|254780808|r  150 VVLTTGT  156 (626)
Q Consensus       150 viiatGt  156 (626)
                      +|-|-|.
T Consensus       148 lVGaDGa  154 (488)
T PRK06834        148 LVGCDGG  154 (488)
T ss_pred             EEEECCC
T ss_conf             9970676


No 124
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.19  E-value=2.1e-05  Score=57.98  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHCCEEE-ECCHHHHCCCCHHHHHHHH-HHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999998754340010011-0001211023545656776-5403341566213304334666666778999998742033
Q gi|254780808|r  318 IQHQFIRTIPGLEKVNIIR-PGYAIEYDYINPKELFPTL-ETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNK  395 (626)
Q Consensus       318 ~Q~rv~r~IPGLEnAef~R-~Gy~ieyd~~~P~~L~~tL-e~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~  395 (626)
                      .+..+.+..|.|+.++|.. ++ +.-.-+.|  . -|.+ +....+|+|+|+=-||-     =-+.+-+||.-+|-.+.|
T Consensus       323 l~~~l~~~FP~L~~v~i~~~W~-G~~~~t~d--~-~P~iG~~~~~~gv~~a~Gy~G~-----Gv~~s~l~G~~lAdli~G  393 (460)
T TIGR03329       323 LTRSLRKFFPALAEVPIAASWN-GPSDRSVT--G-LPFFGRLNGQPNVFYGFGYSGN-----GVAPSRMGGQILSSLVLG  393 (460)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEE-CEECCCCC--C-CCEEEEECCCCCEEEEECCCCC-----CHHHHHHHHHHHHHHHCC
T ss_conf             9999998576555971789970-86363688--9-8469876799999999780797-----567899999999999749


Q ss_pred             CC-CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             45-654653210799999988607877402442000122121157871366
Q gi|254780808|r  396 LD-CICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNR  445 (626)
Q Consensus       396 ~~-p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~R  445 (626)
                      .+ |++=  .     -|+..-..+==.||.|=+=.++=++.+-|.|+++.|
T Consensus       394 ~~~~~~~--~-----~~~~~~~~~~pPeP~r~lG~~~~~~~~~~~d~~e~~  437 (460)
T TIGR03329       394 LDNPWTR--S-----PLVKGPLGYFPPEPIRYLGALVVRNAIRRKERAEDE  437 (460)
T ss_pred             CCCHHHH--C-----HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9981343--8-----342299999999407899999999999988878746


No 125
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.18  E-value=7e-06  Score=61.32  Aligned_cols=147  Identities=18%  Similarity=0.265  Sum_probs=78.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_conf             76357889889426899999998589989999807626012466700221122489999986303999999886314--8
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ--F   80 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~--~   80 (626)
                      ...|||+|||||.+|.-+|..|++.|++|.|+|-+++.... +  -+++=..  --++-++.+| +.-.+.+.....  .
T Consensus        10 ~~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~-p--rA~~l~~--rtleil~~lG-l~~~i~~~~~~~~~~   83 (554)
T PRK06183         10 AHDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDY-P--RAVGIDD--EALRTFQSIG-LVDEVLPHTTPNHGM   83 (554)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-C--CEEEECH--HHHHHHHHCC-CHHHHHHCCCCCCEE
T ss_conf             89888899995989999999999779999999189998888-8--6899899--9999999878-989998418414318


Q ss_pred             HHHCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEE-EEEC---CCCC
Q ss_conf             87307878-----------5553467878499999999999970899689800-10112025881132-2203---5863
Q gi|254780808|r   81 RVLNVKKG-----------PAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISS-IVMQ---DNSM  144 (626)
Q Consensus        81 r~ln~skG-----------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~-v~~~---~g~~  144 (626)
                      +..+ ++|           +-++..+-.+....+-+.+.+.++.+++++|..+ +|+++..+++.+.. +...   ....
T Consensus        84 ~~~~-~~g~~~~~~~~~~~~~~~p~~~~~~Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~  162 (554)
T PRK06183         84 RFLD-AKGRCLADIAPTTDEFGWPRRNAFYQPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRET  162 (554)
T ss_pred             EEEE-CCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEE
T ss_conf             9994-899789972687665687714461099999999999986899899938899999971884279999779995799


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             344543334664
Q gi|254780808|r  145 IRCSTVVLTTGT  156 (626)
Q Consensus       145 ~~~~~viiatGt  156 (626)
                      +.++-+|-|-|-
T Consensus       163 ira~ylVGaDGa  174 (554)
T PRK06183        163 VRARYVVGCDGA  174 (554)
T ss_pred             EEEEEEEECCCC
T ss_conf             997689971788


No 126
>PRK04965 nitric oxide reductase; Provisional
Probab=98.18  E-value=8.8e-06  Score=60.60  Aligned_cols=105  Identities=24%  Similarity=0.375  Sum_probs=61.2

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8763578898894268999999985899--899998076260124667-0022112248999998630399999988631
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      |+++  |+|||+|+||.-||-++-+.+.  ++.+++-.+.    .+.| |.+-     +...     ++   +.++.-  
T Consensus         1 M~~~--IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~----~~Y~rp~Ls-----~~~~-----~~---~~~~~l--   59 (378)
T PRK04965          1 MSNG--IVIIGSGFAARQLVKNIRKQDAHIPITLITADSG----DEYNKPDLS-----HVFS-----QG---QRADDL--   59 (378)
T ss_pred             CCCC--EEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCC----CCCCCCCCH-----HHHC-----CC---CCHHHH--
T ss_conf             9899--9999882999999999971194986999989999----887678166-----9882-----89---996895--


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             48873078785553467878499999999999970899689800-1011202588113222035863344543334664
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                                 .-      ....        ......||++..+ +|+.|+.+...+    +.+|..+.=...|||||-
T Consensus        60 -----------~~------~~~~--------~~~~~~~I~l~~~~~V~~ID~~~k~V----~~~g~~~~YDkLVLATGa  109 (378)
T PRK04965         60 -----------TR------QSAG--------EFAEQFNLRLFPHTWVTDIDAEAQVV----KSQGNQWQYDKLVLATGA  109 (378)
T ss_pred             -----------HC------CCHH--------HHHHHCCEEEECCCEEEEECCCCCEE----EECCCEEECCEEEEECCC
T ss_conf             -----------31------7989--------99874897998698999984646379----958919846879993588


No 127
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=98.17  E-value=6.6e-06  Score=61.50  Aligned_cols=133  Identities=26%  Similarity=0.344  Sum_probs=79.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             357889889426899999998589989999807626012466700221-1-22489999986303999999886314887
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG-L-GKGHLVREIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg-~-akg~L~~Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      .-||+|+|||-||--|||.+|+.|++|+++|.+          +|+|| + +-|+|...|-. -...-..-|+-+|.|+-
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~----------ls~GGG~w~GGmlf~~iVv-~~~a~~iL~e~gI~ye~   98 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK----------LSFGGGIWGGGMLFNKIVV-REEADEILDEFGIRYEE   98 (262)
T ss_pred             HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEE----------CCCCCCCCCCCCCCCCEEE-CCHHHHHHHHHCCCCEE
T ss_conf             326799876850578999998679649999730----------1468763344333560444-25389999981985244


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC-CEEEEEECCCCC-----------CCCCCC
Q ss_conf             30787855534678784999999999999708996898001011202588-113222035863-----------344543
Q gi|254780808|r   83 LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN-IISSIVMQDNSM-----------IRCSTV  150 (626)
Q Consensus        83 ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~-~~~~v~~~~g~~-----------~~~~~v  150 (626)
                             ..-.+-+ +|--.|...+-..-..-+---+.--+|+|+...++ +++||.+.++..           +.++.|
T Consensus        99 -------~e~g~~v-~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~V  170 (262)
T COG1635          99 -------EEDGYYV-ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAV  170 (262)
T ss_pred             -------CCCCEEE-ECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCHHHHCCCCCCCCEEEEEEE
T ss_conf             -------5796698-32799999999998730810242324778998169946899982512220565427511247899


Q ss_pred             CCCCCC
Q ss_conf             334664
Q gi|254780808|r  151 VLTTGT  156 (626)
Q Consensus       151 iiatGt  156 (626)
                      |-+||-
T Consensus       171 vDaTGH  176 (262)
T COG1635         171 VDATGH  176 (262)
T ss_pred             EECCCC
T ss_conf             967888


No 128
>PRK07236 hypothetical protein; Provisional
Probab=98.16  E-value=8.5e-06  Score=60.69  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=78.7

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987635788988942689999999858998999980762601246670022-112-248999998630399999988631
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLG-KGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~g-g~a-kg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      |.+.+  |+|||||.||+=+|+.|++.|+.|.+||-.++.+.      +.| |+. .....+-++.+|-...... ....
T Consensus         4 ~~~~k--V~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~~~~~------~~G~gi~l~p~~~~~L~~~G~~~~~~~-~~~~   74 (386)
T PRK07236          4 MSKPR--AVVVGGSLGGLFAANLLRRAGWDVDVFERSPTELD------GRGGGIVLQPELLRALAFAGVELPADI-GVPS   74 (386)
T ss_pred             CCCCC--EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC------CCEEEEECCHHHHHHHHHCCCCCHHHC-CCCC
T ss_conf             99996--89999368999999999858999899868998678------860499729889999997699564751-8765


Q ss_pred             HHHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             4887307878555---34678784999999999999708996898-0010112025881132220358633445433346
Q gi|254780808|r   79 QFRVLNVKKGPAV---RGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTT  154 (626)
Q Consensus        79 ~~r~ln~skGpAv---~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiat  154 (626)
                      ..+..-...|.-.   ..+..+..+...-+.   .+...|+..+. -.+|+++..++.. +.+...+|....+..||-|-
T Consensus        75 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~---l~~~l~~~~i~~g~~v~~v~~~~~~-v~v~~~dG~~~~adlvVGAD  150 (386)
T PRK07236         75 RERIYLDRDGRVVQRQPMPQTQTSWNVLYRA---LRAALPAEHYHAGEALERVEQDGDR-VTAHFADGREETADLLIGAD  150 (386)
T ss_pred             CCEEEECCCCCEEEEECCCCCCHHHHHHHHH---HHHHCCCCEEEECCEEEEEEEECCE-EEEEECCCCEEEEEEEEECC
T ss_conf             6469994899788761487301149999999---9976899889959999999982997-99998799887762899658


Q ss_pred             CCC
Q ss_conf             643
Q gi|254780808|r  155 GTF  157 (626)
Q Consensus       155 Gtf  157 (626)
                      |..
T Consensus       151 G~~  153 (386)
T PRK07236        151 GGR  153 (386)
T ss_pred             CCC
T ss_conf             877


No 129
>PRK08948 consensus
Probab=98.16  E-value=3.7e-05  Score=56.15  Aligned_cols=145  Identities=16%  Similarity=0.254  Sum_probs=80.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHCCCCCCCCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57889889426899999998589---9899998076260124667002--211224-89999986303999999886314
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG---ASTALITHKTSTIGSMSCNPAI--GGLGKG-HLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~~~~~~~ael~Cnps~--gg~akg-~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      |||+|||||.+|.=.|+++++++   ++|.|+|-.+.....   .|++  ..++=. --++-++.||= --.+.+.+ ..
T Consensus         1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~---~p~~d~Ra~al~~~s~~~L~~lGv-w~~l~~~~-~p   75 (392)
T PRK08948          1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDA---HPGFDARAIALAAGTCQQLARIGV-WSALADCA-TA   75 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCCCEEEEECHHHHHHHHHCCC-CHHHHHHC-CC
T ss_conf             94999995899999999998616799849998278875445---788884345756999999998799-47778506-63


Q ss_pred             HHHHCCC-CC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             8873078-78-----------555346787849999999999997089968980-0101120258811322203586334
Q gi|254780808|r   80 FRVLNVK-KG-----------PAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIR  146 (626)
Q Consensus        80 ~r~ln~s-kG-----------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~  146 (626)
                      ++-+.-+ .|           ....++..-+......+...+.+...|+|++.. .+|+++..+... +.+.+.+|..+.
T Consensus        76 i~~i~v~d~~~~~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~-v~v~l~~g~~~~  154 (392)
T PRK08948         76 ITHVHVSDRGHAGFVTLAAEDYGVAALGYVVELHDVGQRLFALLRKAPGVTLHCPARVANVARTQES-VTVTLDNGETLQ  154 (392)
T ss_pred             CCEEEEEECCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCC-EEEEECCCCEEE
T ss_conf             0078984078776254376660885311278799999999999975899878558768998855882-799978998998


Q ss_pred             CCCCCCCCCC
Q ss_conf             4543334664
Q gi|254780808|r  147 CSTVVLTTGT  156 (626)
Q Consensus       147 ~~~viiatGt  156 (626)
                      ++-+|.|-|.
T Consensus       155 a~llVgaDG~  164 (392)
T PRK08948        155 GKLLVAADGS  164 (392)
T ss_pred             ECEEEEECCC
T ss_conf             3789991899


No 130
>PRK06126 hypothetical protein; Provisional
Probab=98.15  E-value=2.4e-05  Score=57.45  Aligned_cols=149  Identities=18%  Similarity=0.244  Sum_probs=79.2

Q ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987-6357889889426899999998589989999807626012466700221122489999986303999999886314
Q gi|254780808|r    1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      |.| .+.||+|||||.+|.-+|+.||+.|++|.++|-++....   -+-+.+=..  .-++-++.+| +.-.+.+. ++.
T Consensus         2 m~~~~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~---~~rA~~l~~--rtlEil~~lG-l~~~l~~~-g~p   74 (545)
T PRK06126          2 MENTSETPVLIVGGGPVGLALALELGRRGVDSILVERGDGTAF---NPKANATSA--RSMEHFRRLG-IADEVRSA-GLP   74 (545)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC---CCCEEEECH--HHHHHHHHCC-CHHHHHHC-CCC
T ss_conf             9998889989999498999999999987999999889999887---885899888--9999999879-88999850-787


Q ss_pred             --------H------HHHCC----CC--------CCCCCC----HHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCC
Q ss_conf             --------8------87307----87--------855534----67878499999999999970899689800-101120
Q gi|254780808|r   80 --------F------RVLNV----KK--------GPAVRG----PRTQADRELYRLAMQREILSQENLDVIQG-EVAGFN  128 (626)
Q Consensus        80 --------~------r~ln~----sk--------GpAv~a----lraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~  128 (626)
                              |      ..+.+    +.        +.....    +...+.....-....+.++.+++++|..+ |++++.
T Consensus        75 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Q~~lE~~L~~~~~~~~gv~v~~g~~~~~~~  154 (545)
T PRK06126         75 ADYPTDIAYFTRLTGYELARITLPSAREAITPVGGPDGSWPSPELPHRIPQKYVEPILLEHAQAQPGVTLRYGHRLTDFE  154 (545)
T ss_pred             CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEE
T ss_conf             53466336886117668886216754433456544566556656335628899999999999748998898077899999


Q ss_pred             CCCCCEEEE-EECC-CC--CCCCCCCCCCCCC
Q ss_conf             258811322-2035-86--3344543334664
Q gi|254780808|r  129 TEKNIISSI-VMQD-NS--MIRCSTVVLTTGT  156 (626)
Q Consensus       129 ~~~~~~~~v-~~~~-g~--~~~~~~viiatGt  156 (626)
                      .++..+... .... |.  .+.|+-+|-|-|.
T Consensus       155 qd~~gV~~~~~~~~~g~~~~i~A~ylVGaDGa  186 (545)
T PRK06126        155 QDADGVTATVEDLDGGESLTIRADYLVGCDGA  186 (545)
T ss_pred             ECCCCEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf             83894699999899994899987799974788


No 131
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.13  E-value=1.1e-05  Score=60.02  Aligned_cols=346  Identities=15%  Similarity=0.136  Sum_probs=153.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHH-------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             987635788988942689999999858998-999980762-------601246670022112248999998630399999
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTS-------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV   72 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~-------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~   72 (626)
                      |+...+||+|||||.+|.=||+.|-++|+. +.++|.+.+       +...+.|+++=    |..+              
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p----~~~~--------------   65 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSP----KWLL--------------   65 (443)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC----CCCC--------------
T ss_conf             7667554899898788999999999759986799970576678655566871676797----4011--------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCC--C
Q ss_conf             98863148873078785553467878499999999999970---899689800101120258811322203586334--4
Q gi|254780808|r   73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILS---QENLDVIQGEVAGFNTEKNIISSIVMQDNSMIR--C  147 (626)
Q Consensus        73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~---~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~--~  147 (626)
                       .-+...|+      ++..++.++. =|+    ++...++.   ...|.+.....+.-..++.....|.+..+....  +
T Consensus        66 -~~~~~p~~------~~~~~~~~~~-~~~----y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a  133 (443)
T COG2072          66 -GFPFLPFR------WDEAFAPFAE-IKD----YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTA  133 (443)
T ss_pred             -CCCCCCCC------CCCCCCCCCC-HHH----HHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEEC
T ss_conf             -58888877------6556777643-899----99999998356045021452568863058870699964887522512


Q ss_pred             CCCCCCCCCCCHHHHHH--HHCC----------------CCCCCC---C-CCCCCCCCCHHHHHHHHCCCCCCCCCCHHH
Q ss_conf             54333466431013444--3202----------------332224---7-511133100001011200544445441011
Q gi|254780808|r  148 STVVLTTGTFLRGVIHI--GKLK----------------IPAGRM---G-DSPSNSLFNSFMKFDFDTGRLKTGTPARLD  205 (626)
Q Consensus       148 ~~viiatGtfl~g~~~~--g~~~----------------~~~gr~---~-~~~s~~ls~~l~~~~~~~~r~ktgtppri~  205 (626)
                      +.||+|||.+-.+.+-.  |...                +.+.+.   | -.++..+...+.+.+ ..-.+...+|+++.
T Consensus       134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~qRs~~~~~  212 (443)
T COG2072         134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLSQRSPPHIL  212 (443)
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCC-CEEEEEECCCCCCC
T ss_conf             67998305789897888788666686344410169613427887999898703999999997306-71789851797520


Q ss_pred             HCHHHHHH-HHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00001344-32114787-6687774356578000000001232-----00147776402457541443235642225532
Q gi|254780808|r  206 GKTIIWDK-TEKQFADE-RLIPFSFMTDKITNRQIECGITRTN-----LETHRIIMENIKHSAIYSGDIKSYGPRYCPSI  278 (626)
Q Consensus       206 ~~sidf~~-~e~q~~d~-~~~~~s~~~~~~~~~q~~~~~~~t~-----~~~~~~~~~~~~~~~~~~g~~~~~gprycPsi  278 (626)
                      ........ ......+. .+.-.............+|......     ..-.......++..+...+...-.+|+|-+.-
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  292 (443)
T COG2072         213 PKPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGD  292 (443)
T ss_pred             CCHHCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECEEECCCCCCCHHHHHHHHCCCHHCCCCCCCCCHHCCCCCCCCCC
T ss_conf             33101565204333320266432122110121010103102567621456665113111003556550100576667665


Q ss_pred             CCCC---CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCEEEECCHHHHCCCCHHHHHH
Q ss_conf             1233---5676433452013015787764543477666898899999987543400--1001100012110235456567
Q gi|254780808|r  279 EDKI---VRFGERNGHQIFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEK--VNIIRPGYAIEYDYINPKELFP  353 (626)
Q Consensus       279 e~k~---~~~~~~p~h~VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEn--Aef~R~Gy~ieyd~~~P~~L~~  353 (626)
                      .+-.   ..|+.-.+--+.+++|-....-  -.++-+.-.-.+-..++..=+||.-  ....--+|.-..--.+...-++
T Consensus       293 ~r~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (443)
T COG2072         293 GRLVPDGDLFEAGASGDVEVVTEIIDRFT--EGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYK  370 (443)
T ss_pred             CCEEECCCHHHHHCCCCCEEEECCCCCCC--CCCEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEC
T ss_conf             63300333223101477405663000466--7623058875000406871378741010012044154321346652211


Q ss_pred             HHHHHCCCEEEEEEEEECCCHHHHHH
Q ss_conf             76540334156621330433466666
Q gi|254780808|r  354 TLETKKISGLFLAGQINGTTGYEEAA  379 (626)
Q Consensus       354 tLe~k~~~~LffAGQI~GteGYeEAA  379 (626)
                      .+..+..||+|+.+=.+.-++=..++
T Consensus       371 g~~~~~~pn~~~~~~~~~~~~~~~~~  396 (443)
T COG2072         371 GLALSGGPNLFLIGGPTKASGGLKAA  396 (443)
T ss_pred             CCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             52004787257744766751010167


No 132
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.13  E-value=1.5e-05  Score=58.92  Aligned_cols=159  Identities=21%  Similarity=0.247  Sum_probs=100.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCC---CC------CH----------------
Q ss_conf             76357889889426899999998589--98999980762601246670022---11------22----------------
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIG---GL------GK----------------   55 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~g---g~------ak----------------   55 (626)
                      +++|||+|||||--||=-|++|++++  .+|.|+|-..+--.+-|=|||==   |+      .|                
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98322999897389899999999738896599997057653334567653442554489855133999999999999999


Q ss_pred             ---------HHH-----HHHHHHH----------HHHHHHHHHHHHHHHHHHCCCCCC--CCCCHH-HHHHHHHHHHHHH
Q ss_conf             ---------489-----9999863----------039999998863148873078785--553467-8784999999999
Q gi|254780808|r   56 ---------GHL-----VREIDAL----------DGLMGRVADAAGIQFRVLNVKKGP--AVRGPR-TQADRELYRLAMQ  108 (626)
Q Consensus        56 ---------g~L-----~~Ei~aL----------gg~m~~~aD~~~i~~r~ln~skGp--Av~alr-aqvDR~~fs~~vt  108 (626)
                               |+|     -.|++.|          |=.|....|...+.-...|-..|+  |.+.+- -.||=..++..+-
T Consensus        81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             HHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCEECHHHHHHHHH
T ss_conf             84986123680899978277899999999886579861442699999862965443651468757775076899999999


Q ss_pred             HHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCHHH
Q ss_conf             999708996898001011202588113222035863-34454333466431013
Q gi|254780808|r  109 REILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSM-IRCSTVVLTTGTFLRGV  161 (626)
Q Consensus       109 ~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~-~~~~~viiatGtfl~g~  161 (626)
                      +.+..+-.--....||++|....+.+..+.|..|.. +.|+.||.+.|-.....
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~l  214 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPL  214 (429)
T ss_pred             HHHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCHHHHHH
T ss_conf             999976978993483647899279659998347967899568998974517999


No 133
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11  E-value=1.2e-05  Score=59.55  Aligned_cols=142  Identities=24%  Similarity=0.355  Sum_probs=78.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998076260124----66700221122489999986303999999886314
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael----~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      +.|||+|||||-.|-=||+.+|++|.||.++|-.-|.+|--    =|=||=--++.+-.+||++.+.-+-     .-+||
T Consensus       122 ~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~-----~~GI~  196 (673)
T PTZ00153        122 EEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLY-----TYGIH  196 (673)
T ss_pred             HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH-----HCCCC
T ss_conf             3579899998762899999999849869999368787477242777321199998735799886145565-----33751


Q ss_pred             ---HHHHCCCCCCCCC-----CHHHHHHHHHHHHH-----------HHHHHHC------CCCCEEEHHHHCCCCCCCCCE
Q ss_conf             ---8873078785553-----46787849999999-----------9999970------899689800101120258811
Q gi|254780808|r   80 ---FRVLNVKKGPAVR-----GPRTQADRELYRLA-----------MQREILS------QENLDVIQGEVAGFNTEKNII  134 (626)
Q Consensus        80 ---~r~ln~skGpAv~-----alraqvDR~~fs~~-----------vt~~l~~------~pni~i~~~eV~~l~~~~~~~  134 (626)
                         |++ | .|.-++.     +-..+.|+..-.++           ++..+++      ..+++++.+.-. + .+++.+
T Consensus       197 ~~~~g~-~-~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~-i-~~~~~v  272 (673)
T PTZ00153        197 SDAFGK-N-GKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGH-I-IDKNII  272 (673)
T ss_pred             CCCCCC-C-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEE-E-CCCCEE
T ss_conf             132343-3-32221111222354211569999999999999875017767540676666663599933037-7-146347


Q ss_pred             EEEEECCCCCCCCCCCCCCCCC
Q ss_conf             3222035863344543334664
Q gi|254780808|r  135 SSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus       135 ~~v~~~~g~~~~~~~viiatGt  156 (626)
                      .  ....+..+.++-+|||||.
T Consensus       273 ~--~~~~~~~~~aKnIIIATGS  292 (673)
T PTZ00153        273 K--GEKSGKEFKVKNIIIATGS  292 (673)
T ss_pred             E--ECCCCCEEECCEEEECCCC
T ss_conf             7--4378855502307990188


No 134
>PRK02106 choline dehydrogenase; Validated
Probab=98.09  E-value=4.3e-06  Score=62.83  Aligned_cols=37  Identities=35%  Similarity=0.550  Sum_probs=34.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf             98763578898894268999999985-89989999807
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHK   37 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar-~G~~v~L~~~~   37 (626)
                      ||+-+||+||||||-|||-.|+.||+ -|.+|+|+|-=
T Consensus         1 ~~~~eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG   38 (555)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG   38 (555)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             98871288998966899999999834989859998689


No 135
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.08  E-value=4.5e-06  Score=62.68  Aligned_cols=35  Identities=40%  Similarity=0.650  Sum_probs=32.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             35788988942689999999858998999980762
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      +|||+|||||+||.-||+.+|+.|.+|+|++.-..
T Consensus         2 k~DvlVIGgGLAGl~aAl~~a~~G~~v~lvs~Gqg   36 (425)
T PRK05329          2 KFDVVVIGGGLAGLTCALALAEAGKRCAIVAKGQS   36 (425)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             87789999529999999999977993899927843


No 136
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07  E-value=4.8e-06  Score=62.45  Aligned_cols=35  Identities=37%  Similarity=0.614  Sum_probs=31.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             63578898894268999999985899899998076
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +.||||||||||+|-=||..|||.|.+|+++|.+.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~   36 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND   36 (487)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             97629998988789999999996899799996378


No 137
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.06  E-value=5.1e-06  Score=62.27  Aligned_cols=33  Identities=42%  Similarity=0.652  Sum_probs=31.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             578898894268999999985899899998076
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |||+|||||+||.-||..+|+.|.+|+|++.-.
T Consensus         1 fDviVIGgGLAGl~aai~~a~~G~~~~lvs~Gq   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             978999961999999999997799589993783


No 138
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.01  E-value=3.7e-05  Score=56.18  Aligned_cols=107  Identities=19%  Similarity=0.420  Sum_probs=67.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             987635788988942689999999858998--99998076260124667-002211224899999863039999998863
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAS--TALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDALDGLMGRVADAAG   77 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aLgg~m~~~aD~~~   77 (626)
                      |..+  +|+|||||+||..||.++-+.|..  +.|++-.+    .++++ |.+-   |+.+...             .  
T Consensus         1 M~~~--~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~----~~PY~Rp~Ls---k~~l~~~-------------~--   56 (400)
T PRK09754          1 MKEK--TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER----HLPYERPPLS---KSMLLED-------------S--   56 (400)
T ss_pred             CCCC--EEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCC----CCCCCCHHCC---HHHHCCC-------------C--
T ss_conf             9967--2999977599999999998069499799998999----9988651073---9987699-------------7--


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             148873078785553467878499999999999970899689800-1011202588113222035863344543334664
Q gi|254780808|r   78 IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        78 i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                                 |....+   .+.+-|         ...+|++..+ +|+.|..+...   |.+.+|..+.-..+|||||.
T Consensus        57 -----------~~~~~l---~~~~~y---------~~~~I~l~~g~~v~~id~~~~~---V~l~~g~~~~YD~LviATGa  110 (400)
T PRK09754         57 -----------PQLQQV---LPANWW---------QENNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGA  110 (400)
T ss_pred             -----------HHHHHC---CCHHHH---------HHCCCEEECCCEEEEECCCCCE---EEECCCCEEECCEEEECCCC
T ss_conf             -----------244324---898799---------8789699889889997188988---99879988872605887788


Q ss_pred             C
Q ss_conf             3
Q gi|254780808|r  157 F  157 (626)
Q Consensus       157 f  157 (626)
                      -
T Consensus       111 ~  111 (400)
T PRK09754        111 A  111 (400)
T ss_pred             C
T ss_conf             8


No 139
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.00  E-value=1.2e-05  Score=59.77  Aligned_cols=142  Identities=15%  Similarity=0.278  Sum_probs=78.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH--CCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_conf             357889889426899999998589989999807626--012-466700221122489999986303999999886----3
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST--IGS-MSCNPAIGGLGKGHLVREIDALDGLMGRVADAA----G   77 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~--~ae-l~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~----~   77 (626)
                      +-||+|||||.||.=+|+.|++.|++|.++|.+++-  .|- ...+|.        -++=++.|| +.-.+...+    .
T Consensus         2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~G~gi~l~pn--------~~~~L~~lG-l~~~l~~~~~~~~~   72 (400)
T PRK06475          2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPN--------AMRHLERLG-VADRLSGTGVTPKA   72 (400)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHH--------HHHHHHHCC-CHHHHHHCCCCCCE
T ss_conf             997999895889999999999789999999179988888847888889--------999999879-92788843888625


Q ss_pred             HH------------HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEE-E-ECCC
Q ss_conf             14------------887307878555346787849999999999997089968980-0101120258811322-2-0358
Q gi|254780808|r   78 IQ------------FRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSI-V-MQDN  142 (626)
Q Consensus        78 i~------------~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v-~-~~~g  142 (626)
                      +.            ..+.+.+.. ....+...+.|..+.....+.+..+|++++.. .+|+++..++..+... . +..+
T Consensus        73 ~~~~d~~~~~~~~~~~~~~~~~~-~~~~p~~~i~R~~L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~  151 (400)
T PRK06475         73 LYLMDGRKARPLLHMQLGDLARK-RWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSV  151 (400)
T ss_pred             EEEEECCCCCEEEEECCCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCC
T ss_conf             99960786745652024432222-57896599778999999999997489948973878999995289604899738986


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             63344543334664
Q gi|254780808|r  143 SMIRCSTVVLTTGT  156 (626)
Q Consensus       143 ~~~~~~~viiatGt  156 (626)
                      ..+.+..+|-|-|-
T Consensus       152 ~~~~adlvIGADGi  165 (400)
T PRK06475        152 ETVSAAYLIACDGV  165 (400)
T ss_pred             EEEECCEEEECCCC
T ss_conf             69970689966997


No 140
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.00  E-value=9.8e-06  Score=60.27  Aligned_cols=37  Identities=38%  Similarity=0.531  Sum_probs=34.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8763578898894268999999985899899998076
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |.+.|||+|||||--|+=.|+-+|.+|++|+|+|.+-
T Consensus         3 ~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~D   39 (503)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADD   39 (503)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             6774798999977889999999986799699993687


No 141
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.99  E-value=5.9e-06  Score=61.82  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=81.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788988942689999999858--998999980762601---246670022112248999998630399999988631488
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIG---SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~a---el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
                      ||+|||||.||.=-|+.+++.  +.+|+|++.+++..-   ..=|   +=....+.+-       .++...-+.  .+++
T Consensus         1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~---fW~~~~~~~~-------~~~~~~W~~--~~v~   68 (374)
T pfam05834         1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWS---DEFEDLGPLA-------PCVEHSWPG--YEVR   68 (374)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEC---CCCCCCCCHH-------HHHHCEECC--EEEE
T ss_conf             989999529999999999740899819999789888889983854---5717877757-------776458796--7999


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             7307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r   82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf  157 (626)
                      .-+.+.--....- .-+|...|..++.+.+.+.+++ ++++.|..+...+. ...|.+.+|..+.|+.|+-+.|+-
T Consensus        69 ~~~~~~~l~~~~Y-~~i~s~~f~~~~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~V~Dsr~~~  141 (374)
T pfam05834        69 FPDGRRKLIGRGY-GRVSSDRLHEELLRRCAENGVI-RLNAKVASVDAEPV-ESLVVLEDGRTIRARLVIDARGAS  141 (374)
T ss_pred             ECCCCEEECCCCC-EEEEHHHHHHHHHHHHHHCCCE-EECCEEEEEECCCC-CEEEEECCCCEEEEEEEEECCCCC
T ss_conf             2899747668870-7988899999999998657969-99137789753787-059992699587444999478766


No 142
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.97  E-value=1.1e-05  Score=59.83  Aligned_cols=36  Identities=36%  Similarity=0.485  Sum_probs=33.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      ++.|||+|||||-.|+=+|+-+|.+|++|+|+|..-
T Consensus         4 ~e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~D   39 (503)
T PRK13369          4 PEDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (503)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             883788999967888999999996899499982687


No 143
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.96  E-value=9.2e-06  Score=60.47  Aligned_cols=33  Identities=36%  Similarity=0.615  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             578898894268999999985899899998076
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |||+|||||-+|+=+||.||++|.+|+++|-..
T Consensus         1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             929999932999999999997899499998999


No 144
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.93  E-value=9e-05  Score=53.44  Aligned_cols=145  Identities=16%  Similarity=0.199  Sum_probs=81.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHH-HHHH-
Q ss_conf             57889889426899999998589--989999807626012466700221122-489999986303999999886-3148-
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGK-GHLVREIDALDGLMGRVADAA-GIQF-   80 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg~ak-g~L~~Ei~aLgg~m~~~aD~~-~i~~-   80 (626)
                      .||+|||||.+|.=+|+.|++.|  ++|.+++..|+..   +.+++ .+++= ..=++.++.||= --.+...+ .++- 
T Consensus         2 ~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~---~~~d~-Ra~al~~~s~~~L~~lGv-~~~l~~~~~~i~~~   76 (403)
T PRK07333          2 RDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGA---WSRDP-RASAIAAAARRMLEALGV-WQEIAPEAQPITDM   76 (403)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC---CCCCC-EEEEECHHHHHHHHHCCC-HHHHHHHCCCCEEE
T ss_conf             83999994699999999998469996699982886668---78887-688867999999998798-78877516100279


Q ss_pred             HHHCC-CC-----------C--CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf             87307-87-----------8--555346787849999999999997089968980-010112025881132220358633
Q gi|254780808|r   81 RVLNV-KK-----------G--PAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMI  145 (626)
Q Consensus        81 r~ln~-sk-----------G--pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~  145 (626)
                      .+-+. ..           +  ..+..+...+++........+.+++ +++++.. .+|+++..++.. +.+.+.++..+
T Consensus        77 ~v~d~~~~~~~~~~~l~f~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~~v~~~~~~~v~~i~~~~~~-v~v~l~~g~~i  154 (403)
T PRK07333         77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEA-LGIDLREATSVTDFETRDEG-VTVTLADGSTL  154 (403)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCE-EEEEECCCCEE
T ss_conf             99846557766642002464345688736874589999999999982-89989858857899974980-79997899899


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             445433346643
Q gi|254780808|r  146 RCSTVVLTTGTF  157 (626)
Q Consensus       146 ~~~~viiatGtf  157 (626)
                      .++-+|.|-|.-
T Consensus       155 ~a~llIgaDG~~  166 (403)
T PRK07333        155 EARLLVAADGAR  166 (403)
T ss_pred             EEEEEEECCCCC
T ss_conf             986999834876


No 145
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87  E-value=0.00033  Score=49.42  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             HCCCEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             03341566213304----------334666666778999998742033456
Q gi|254780808|r  358 KKISGLFLAGQING----------TTGYEEAAAQGLVAGINSARKSNKLDC  398 (626)
Q Consensus       358 k~~~~LffAGQI~G----------teGYeEAAAqGl~AGiNa~~~~~~~~p  398 (626)
                      ..+||||.||-.+|          --...|+-.-|-.||.+++..+.....
T Consensus       360 t~I~GLyAaGE~a~~GvHGANRLggNsLle~~VfGr~Ag~~aa~~~~~~~~  410 (570)
T PRK05675        360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALREGIE  410 (570)
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             321533541142346766566642167788898699999999987633676


No 146
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.87  E-value=3.7e-05  Score=56.14  Aligned_cols=73  Identities=21%  Similarity=0.173  Sum_probs=48.3

Q ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECC-CHHHHH
Q ss_conf             764543477666898899999987543400--10011000121102354565677654033415662133043-346666
Q gi|254780808|r  302 TDVVYPNGISTALPEEIQHQFIRTIPGLEK--VNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT-TGYEEA  378 (626)
Q Consensus       302 ~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEn--Aef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gt-eGYeEA  378 (626)
                      ...+.-+|+.-+..+            +++  .++-+-|+ |        ..+..++| .+||+|.||-+++- .=-..|
T Consensus       275 D~vlvavG~~P~~~~------------~~~~gv~ld~~G~-I--------~vd~~~~T-svpgIyAaGDv~~g~~~a~~A  332 (350)
T PRK12770        275 DTVITAIGEIPTPPF------------KKELGIELNRDGE-I--------KVDEKHMT-SREGVFAAGDVVTGPSKIGKA  332 (350)
T ss_pred             CEEEEEECCCCCCCH------------HHHCCEEECCCCE-E--------EECCCCEE-CCCCEEEEECCCCCHHHHHHH
T ss_conf             789999777788413------------5415912889981-9--------86989744-899999801687888899999


Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             667789999987420334
Q gi|254780808|r  379 AAQGLVAGINSARKSNKL  396 (626)
Q Consensus       379 AAqGl~AGiNa~~~~~~~  396 (626)
                      +++|-+|+.++.++++|+
T Consensus       333 ~~eG~~AA~~i~~yL~g~  350 (350)
T PRK12770        333 LKSGLRAAQSIHEWLLGK  350 (350)
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999999987769


No 147
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.87  E-value=0.00013  Score=52.41  Aligned_cols=95  Identities=21%  Similarity=0.330  Sum_probs=63.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      .|+|||||.-|+|+|.+++++|.+|.|+++.+.-+     ++.+.                                   
T Consensus       139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il-----~~~~d-----------------------------------  178 (427)
T TIGR03385       139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKIL-----NKLFD-----------------------------------  178 (427)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC-----CCCCC-----------------------------------
T ss_conf             89999963999999999997699899998468336-----55489-----------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             785553467878499999999999970899689800-1011202588113222035863344543334664310
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                                    ...++.+++.++++ +|+++-+ .|+++..+ +  ..+.+.+|..+.+..||+++|---+
T Consensus       179 --------------~~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~-~--~~~~l~~g~~i~~D~vi~a~G~~Pn  234 (427)
T TIGR03385       179 --------------EEMNQIVEEELEKH-EIELRLNEEVDSIIGE-E--RVGVITSGGVYQADMVILAIGVKPN  234 (427)
T ss_pred             --------------HHHHHHHHHHHHHC-CCEEEECCEEEEEECC-C--CEEEEECCCEEECCEEEECCCCCCC
T ss_conf             --------------99999999999975-9799979889999878-8--7899946999972899988774676


No 148
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.86  E-value=2.6e-05  Score=57.29  Aligned_cols=58  Identities=26%  Similarity=0.489  Sum_probs=45.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH----------HHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             3578898894268999999985899899998076----------26012466700221122489999986303
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT----------STIGSMSCNPAIGGLGKGHLVREIDALDG   67 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~----------~~~ael~Cnps~gg~akg~L~~Ei~aLgg   67 (626)
                      +|||+|||||+||.-||+++++.|.+|.+++-.-          |-++.|+   |  |-+.++++.-++||-.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsALhfsSGslDlLg~lP---d--G~~v~~~~~~l~AL~~   69 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLDLLGRLP---D--GQAVTDIHDGLDALRQ   69 (421)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHCCC---C--CCCCCCCCCHHHHHHH
T ss_conf             630799767288889999999658807998577013102565177762098---9--8826661015889875


No 149
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=97.86  E-value=1.4e-05  Score=59.13  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=75.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf             35788988942689999999858998999980762601246670022112248999998630399999988631488---
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR---   81 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r---   81 (626)
                      +-||+|||||.||.=+|+.|++.|++|.++|-+++-- .-.+.  + ++.. .-++-|+.||-. ....+.......   
T Consensus         1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~-~~g~g--~-~l~p-~~~~~L~~lGl~-~~~~~~~~~~~~~~~   74 (349)
T pfam01494         1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTS-VLPRA--G-GLNQ-RTMELLRQAGLE-DRILAEGAPHEGMGL   74 (349)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCEE--E-EECH-HHHHHHHHCCCH-HHHHHCCCCCCEEEE
T ss_conf             9978999928899999999987799899992899988-78779--9-9898-999999987986-899850687510599


Q ss_pred             -HHCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEE----ECCCCCCCCCC
Q ss_conf             -73078785------553467878499999999999970899689-8001011202588113222----03586334454
Q gi|254780808|r   82 -VLNVKKGP------AVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIV----MQDNSMIRCST  149 (626)
Q Consensus        82 -~ln~skGp------Av~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~----~~~g~~~~~~~  149 (626)
                       ..+.++.+      ........+.|..+.+.+.+.+...+ +++ ...+|+++..+...+....    ...+..+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adl  153 (349)
T pfam01494        75 AFYNTSRRRADLDFLTSPPRVTVYPQTELEPILREHAEARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKY  153 (349)
T ss_pred             EECCCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEE
T ss_conf             98378642220145567762688629999999999998579-98996617877520599437999845899558999768


Q ss_pred             CCCCCCCC
Q ss_conf             33346643
Q gi|254780808|r  150 VVLTTGTF  157 (626)
Q Consensus       150 viiatGtf  157 (626)
                      ||-|-|..
T Consensus       154 vIgADG~~  161 (349)
T pfam01494       154 LVGCDGGR  161 (349)
T ss_pred             EECCCCCC
T ss_conf             84157776


No 150
>KOG1335 consensus
Probab=97.86  E-value=6.9e-05  Score=54.26  Aligned_cols=133  Identities=26%  Similarity=0.409  Sum_probs=74.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             635788988942689999999858998999980762---60124667002211224899999863039999998863148
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      ++|||+|||+|-.|--||.++|++|.+|.-+|.|-.   ++=---|=||=--+.-+|+.+|+.--  .|    ..-+|  
T Consensus        38 ~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~--~~----~~rGi--  109 (506)
T KOG1335          38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE--DF----ASRGI--  109 (506)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH--HH----HHCCC--
T ss_conf             66788998778725899999987154168873157536545643633538876333789988766--89----86093--


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHH----------HHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf             87307878555346787849999999999----------99708996898001011202588113222035863344543
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQR----------EILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTV  150 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~----------~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~v  150 (626)
                               -|.+  |-.|+..+..+-..          .+...-+++++.+--+=+.+..-. +.-.......+.++-.
T Consensus       110 ---------~vs~--~~~dl~~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p~~V~-v~k~dg~~~ii~aKnI  177 (506)
T KOG1335         110 ---------DVSS--VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVS-VKKIDGEDQIIKAKNI  177 (506)
T ss_pred             ---------CCCC--EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEE-EECCCCCCEEEEEEEE
T ss_conf             ---------1132--004789999877778999766899887634838995137653874688-8535897337863169


Q ss_pred             CCCCCC
Q ss_conf             334664
Q gi|254780808|r  151 VLTTGT  156 (626)
Q Consensus       151 iiatGt  156 (626)
                      |+|||.
T Consensus       178 iiATGS  183 (506)
T KOG1335         178 IIATGS  183 (506)
T ss_pred             EEECCC
T ss_conf             996177


No 151
>PRK07208 hypothetical protein; Provisional
Probab=97.85  E-value=2.5e-05  Score=57.34  Aligned_cols=49  Identities=29%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC
Q ss_conf             9876357889889426899999998589989999807626012466700221
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG   52 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg   52 (626)
                      |.+|+  |+|||||.||+=||+.|++.|.+|+++|.+. .+|=+.++-..+|
T Consensus         1 ~~~kk--v~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~-~vGGl~~t~~~~G   49 (474)
T PRK07208          1 TEKKS--VVIIGAGPAGLTAAYELVKRGYPVTILEADP-EVGGISRTVTYKG   49 (474)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCEEEEEEECC
T ss_conf             99875--9998976899999999986899759997899-8754477889899


No 152
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971   This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=97.80  E-value=9.5e-05  Score=53.26  Aligned_cols=151  Identities=17%  Similarity=0.278  Sum_probs=97.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCHHHC-CCCCCCCCCCC--C----CHHHHHHHHHHHHHHHH-HHH
Q ss_conf             7889889426899999998589-----9899998076260-12466700221--1----22489999986303999-999
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLG-----ASTALITHKTSTI-GSMSCNPAIGG--L----GKGHLVREIDALDGLMG-RVA   73 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G-----~~v~L~~~~~~~~-ael~Cnps~gg--~----akg~L~~Ei~aLgg~m~-~~a   73 (626)
                      ||+|||||++|.=.|.+|++.|     .+|+|+|..+..- ..-.=+|++-+  +    +-=.+.+.|++=..+.. +++
T Consensus         1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~   80 (445)
T TIGR01988         1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ   80 (445)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             96888473889999999841863124731799605211442211258765522010107999999867964452012126


Q ss_pred             HHH-----------------HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--CEEEH-HHHCCCCCCC--
Q ss_conf             886-----------------3148873078785553467878499999999999970899--68980-0101120258--
Q gi|254780808|r   74 DAA-----------------GIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQEN--LDVIQ-GEVAGFNTEK--  131 (626)
Q Consensus        74 D~~-----------------~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pn--i~i~~-~eV~~l~~~~--  131 (626)
                      --.                 .|+|+=-.-. | -..+|..-|.=....+...+.+.+.||  +++.. .+|..+....  
T Consensus        81 p~~~~~V~D~~~~g~~~~P~~~~F~~~~~~-~-~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (445)
T TIGR01988        81 PIRDIHVSDGGSFGRAPHPAALHFDADEVG-G-PAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSK  158 (445)
T ss_pred             CCCEEEEEECCCCCCCCCCEEEEECHHHCC-C-CCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCC
T ss_conf             320488872678888888636874434417-8-80112367118899999999999668964775167214774036775


Q ss_pred             --CCEEEEEECCCCC---CCCCCCCCCCCCCCH
Q ss_conf             --8113222035863---344543334664310
Q gi|254780808|r  132 --NIISSIVMQDNSM---IRCSTVVLTTGTFLR  159 (626)
Q Consensus       132 --~~~~~v~~~~g~~---~~~~~viiatGtfl~  159 (626)
                        ...+.+.+.+|..   +.|+.+|-|-|..-.
T Consensus       159 ~~~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~  191 (445)
T TIGR01988       159 NDSDEVELTLSDGRQKLLLRARLLVGADGANSK  191 (445)
T ss_pred             CCCCCEEEEECCCCEEEEEEECEEEEECCCCHH
T ss_conf             688607999708947678985327873586525


No 153
>PRK06847 hypothetical protein; Provisional
Probab=97.78  E-value=5.6e-05  Score=54.92  Aligned_cols=139  Identities=21%  Similarity=0.353  Sum_probs=77.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q ss_conf             88988942689999999858998999980762601246670022112-24899999863039999998863148---873
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLG-KGHLVREIDALDGLMGRVADAAGIQF---RVL   83 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~a-kg~L~~Ei~aLgg~m~~~aD~~~i~~---r~l   83 (626)
                      |+|||||.||.=+|+.|++.|++|.++|.+++.- +...     |++ ...-++-++.|| +.-.+.+. +...   ++.
T Consensus         7 V~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~-~~g~-----gi~l~~~~~~~L~~lG-l~~~i~~~-~~~~~~~~~~   78 (375)
T PRK06847          7 VLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWR-PYGA-----GITLQGNTLRALKELG-VLDECLEH-GFGFDGVDIF   78 (375)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCE-----EEEECHHHHHHHHHCC-CHHHHHHH-CCCCCEEEEE
T ss_conf             9999966899999999996799999990899988-8860-----8988989999999879-95899960-7885229999


Q ss_pred             CCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             07878-------------55534678784999999999999708996898-00101120258811322203586334454
Q gi|254780808|r   84 NVKKG-------------PAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCST  149 (626)
Q Consensus        84 n~skG-------------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~  149 (626)
                      + ..|             +..... ..+.|..+.+...+.+... +++|. .-+|+++..++.. +.+...+|..+.+..
T Consensus        79 ~-~~G~~~~~~~~~~~~~~~~~~~-~~i~r~~L~~~L~~~~~~~-~~~v~~~~~v~~i~~~~~~-v~v~~~dG~~~~adl  154 (375)
T PRK06847         79 D-PAGHLLAEVPTPRVAGDDVPGG-GGIMRPTLARILADAARAS-GVDVRLGTTVTAIEQDDDG-VDVTFTDGTTGRYDL  154 (375)
T ss_pred             E-CCCCEEEEECCHHHCCCCCCCE-EEEEHHHHHHHHHHHHHHC-CCEEEECCEEEEEEECCCE-EEEEECCCCEEEEEE
T ss_conf             6-8998899834312035667721-2770999999999989846-9979966589786664985-899985898899879


Q ss_pred             CCCCCCCCC
Q ss_conf             333466431
Q gi|254780808|r  150 VVLTTGTFL  158 (626)
Q Consensus       150 viiatGtfl  158 (626)
                      +|-|-|...
T Consensus       155 lIGADG~~S  163 (375)
T PRK06847        155 VVGADGVYS  163 (375)
T ss_pred             EEECCCCCC
T ss_conf             998578762


No 154
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.77  E-value=0.00023  Score=50.56  Aligned_cols=105  Identities=23%  Similarity=0.415  Sum_probs=60.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             889889426899999998589--9899998076260124667-0022112248999998630399999988631488730
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLN   84 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln   84 (626)
                      |+|||||+||..||..++|.+  ..+.+++-... +.--.|. |-+              +++.+.              
T Consensus         3 vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~-~~y~~~~lp~~--------------~~~~~~--------------   53 (443)
T PRK09564          3 IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDI-ISFGACGLPYF--------------VGGFFD--------------   53 (443)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCCCCHHHHH--------------HCCCCC--------------
T ss_conf             9999960999999999981493999999948898-77765520344--------------405558--------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCCC
Q ss_conf             78785553467878499999999999970899689-80010112025881132220358633--44543334664
Q gi|254780808|r   85 VKKGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIVMQDNSMI--RCSTVVLTTGT  156 (626)
Q Consensus        85 ~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~~~~g~~~--~~~~viiatGt  156 (626)
                              .     ....+.+ ..+..+. .+|++ ...+|+.++.+...+..-....+..+  .-..+|||||.
T Consensus        54 --------~-----~~~~~~~-~~~~~~~-~gi~~~~~~~v~~id~~~k~v~~~~~~~~~~~~~~yD~LiiATGs  113 (443)
T PRK09564         54 --------D-----PNNMIAR-TPEEFIK-SGIDVKTEHEVVKVDFKNKTITVKNLKTGSIFNDTYDKLMIATGA  113 (443)
T ss_pred             --------C-----HHHHHHH-CHHHHHH-CCCEEEECCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCC
T ss_conf             --------9-----8998741-9999998-799999388899997468648998468761661346789996167


No 155
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727   This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=97.77  E-value=0.00026  Score=50.17  Aligned_cols=150  Identities=20%  Similarity=0.321  Sum_probs=93.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH--------------CCCCCC-CCCC----------------------
Q ss_conf             889889426899999998589989999807626--------------012466-7002----------------------
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST--------------IGSMSC-NPAI----------------------   50 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~--------------~ael~C-nps~----------------------   50 (626)
                      |+|||||..|.=-||+|+++|.+|+|++.+++-              ++|... ..+|                      
T Consensus         1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t   80 (357)
T TIGR02352         1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT   80 (357)
T ss_pred             CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             97845318789999999974993899965860456778866433243266746767478999999997599999987317


Q ss_pred             --------CCC-------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCC--CCCCCHH-HHHHHHHHHHHHHH
Q ss_conf             --------211-------22489999986303999---999886314887307878--5553467-87849999999999
Q gi|254780808|r   51 --------GGL-------GKGHLVREIDALDGLMG---RVADAAGIQFRVLNVKKG--PAVRGPR-TQADRELYRLAMQR  109 (626)
Q Consensus        51 --------gg~-------akg~L~~Ei~aLgg~m~---~~aD~~~i~~r~ln~skG--pAv~alr-aqvDR~~fs~~vt~  109 (626)
                              .|+       +-..-.++++.+.+..+   ..-+..++..-=.|-|-+  -|++.+. +|||=..|-++.-+
T Consensus        81 g~~~~y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~~~~~l~~~~~r~~EP~L~~~~~~a~~~p~d~~v~~r~l~~AL~~  160 (357)
T TIGR02352        81 GLDTGYRQCGTLVVAFDEDDVEKLRQLADLQSATGMELEWLSGRALRRLEPYLSPGIRGAVYYPDDAHVDPRELLKALVK  160 (357)
T ss_pred             CCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf             99512740525894078711688899999987528604650779999844252422033457486523371899999999


Q ss_pred             HHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             997089968980-01011202588113222035863344543334664310
Q gi|254780808|r  110 EILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       110 ~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      .++.- ..++.+ -+|.++......+..+.|..+ .+.+..||+|+|.-..
T Consensus       161 ~~~~l-Gv~i~~~~~v~~~~~~~~~~~~~~~~~~-~~~ad~vV~A~G~wa~  209 (357)
T TIGR02352       161 ALEKL-GVEIIEEVEVQEIEARGEKVTAVVTSSG-DVQADQVVLAAGAWAG  209 (357)
T ss_pred             HHHHC-CCEEEECCCEEEEECCCCEEEEECCCCC-CEECCEEEEECCCCHH
T ss_conf             99856-9479862533564326766988528854-2655747993573334


No 156
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.76  E-value=0.00034  Score=49.33  Aligned_cols=135  Identities=22%  Similarity=0.340  Sum_probs=76.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57889889426899999998589---9899998076--260124667002211224899999863039999998863148
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG---ASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G---~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      |||+|||+|=||-=||..+++.|   ++|.|++.=|  -|+==-=|=||     | +|.+=     +...+-+.++.--+
T Consensus         1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~GGTCVNVGCVPS-----K-~llra-----a~~~~~a~~~~~f~   69 (494)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLGGTCVNVGCVPS-----K-ILLRA-----AEVAHYARKPPFFV   69 (494)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHH-----H-HHHHH-----HHHHHHHHCCCCCC
T ss_conf             9189982768999999999854887159999637897761585232745-----8-99999-----98876763477777


Q ss_pred             HHHCCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC-CCCCCCCCC-CCCC
Q ss_conf             87307878555346787849-----9999999999970899689800101120258811322203-586334454-3334
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADR-----ELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-DNSMIRCST-VVLT  153 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR-----~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-~g~~~~~~~-viia  153 (626)
                      ..+  ++-|+|.-.++.-+.     ++=++...+.|++++|++++|++..   +.+.+.+-|... -|..+.... ++||
T Consensus        70 g~~--~~~~~v~~~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~---F~d~~~V~v~~~~GG~~~~~~k~~lIA  144 (494)
T TIGR02053        70 GLL--AATVEVDFEELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRAR---FKDPKTVKVDLAEGGREVVGAKRFLIA  144 (494)
T ss_pred             CCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE---ECCCCEEEEECCCCCCCHHHCCCEEEE
T ss_conf             753--543442389999998899999877678999851798679986799---847878997278885004213866896


Q ss_pred             CCC
Q ss_conf             664
Q gi|254780808|r  154 TGT  156 (626)
Q Consensus       154 tGt  156 (626)
                      ||-
T Consensus       145 TGa  147 (494)
T TIGR02053       145 TGA  147 (494)
T ss_pred             ECC
T ss_conf             467


No 157
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.76  E-value=0.0001  Score=52.99  Aligned_cols=305  Identities=19%  Similarity=0.289  Sum_probs=141.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9876357889889426899999998589--98999980762601246670022112248999998630399999988631
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      ||.++  |+|||||.+|.++|..+++.-  +.+.|+.-+.-.+ .           +. |..|+                
T Consensus         1 ~~~~~--iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-~-----------~p-lL~ev----------------   49 (405)
T COG1252           1 MMKKR--IVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-F-----------TP-LLYEV----------------   49 (405)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-----------CH-HHHHH----------------
T ss_conf             99756--999898679999999764167887189991887666-6-----------30-33556----------------


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             48873078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                                 |...+    +-..-+.-..+.+....|++++++||++|+.++.+|.   +.++..+.=...|+++|--.
T Consensus        50 -----------a~g~l----~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~---~~~~~~i~YD~LVvalGs~~  111 (405)
T COG1252          50 -----------ATGTL----SESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVT---LADLGEISYDYLVVALGSET  111 (405)
T ss_pred             -----------HCCCC----CHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEEE---ECCCCCCCCCEEEEECCCCC
T ss_conf             -----------32877----7565213089984235744899978999715679899---57887023638999458766


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01344432023322247511133100001011200544445441011000013443211478766877743565780000
Q gi|254780808|r  159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI  238 (626)
Q Consensus       159 ~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~  238 (626)
                      +-.      ..++.....++.+.+++.+.-   +.         ++.   --|.++.....+.....+.----=+.--++
T Consensus       112 ~~f------gi~G~~E~a~~lks~edA~~i---r~---------~l~---~~fe~a~~~~~~~~~lti~IvGgG~TGVEl  170 (405)
T COG1252         112 NYF------GIPGAAEYAFGLKTLEDALRL---RR---------HLL---EAFEKASQEEDDRALLTIVIVGGGPTGVEL  170 (405)
T ss_pred             CCC------CCCCHHHHCCCCCCHHHHHHH---HH---------HHH---HHHHHHHCCCCCCCEEEEEEECCCHHHHHH
T ss_conf             768------997878707777889999999---99---------999---999986335643441189998988238999


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEECCC-------
Q ss_conf             00001232001477764024575414432356422255321233567643-----------345201301578-------
Q gi|254780808|r  239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER-----------NGHQIFLEPEGL-------  300 (626)
Q Consensus       239 ~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~-----------p~h~VqLrpE~~-------  300 (626)
                      .|   +....-+.........+....-.....|||-.|..+.++.....+           ...|...+|++.       
T Consensus       171 Ag---eL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~  247 (405)
T COG1252         171 AG---ELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEE  247 (405)
T ss_pred             HH---HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCCEEECCCCE
T ss_conf             99---999999987653347865318999825712135888899999999999879789869814897699179755883


Q ss_pred             ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH--
Q ss_conf             ---776454347766689889999998754340010011000121102354565677654033415662133043346--
Q gi|254780808|r  301 ---NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY--  375 (626)
Q Consensus       301 ---~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY--  375 (626)
                         ..+.+.-.|.+-+       .+.+.|-|+|   --|-|         =-+.+++|++..+|++|.+|-......=  
T Consensus       248 ~I~~~tvvWaaGv~a~-------~~~~~l~~~e---~dr~G---------rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p  308 (405)
T COG1252         248 EIPADTVVWAAGVRAS-------PLLKDLSGLE---TDRRG---------RLVVNPTLQVPGHPDIFAAGDCAAVIDPRP  308 (405)
T ss_pred             EEECCEEEECCCCCCC-------HHHHHCCHHH---HCCCC---------CEEECCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             7762779985777578-------6666327022---13489---------777578751699898699711103768887


Q ss_pred             -----HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             -----6666677899999874203345
Q gi|254780808|r  376 -----EEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       376 -----eEAAAqGl~AGiNa~~~~~~~~  397 (626)
                           .-|-.||-.++-|..+.++|++
T Consensus       309 ~P~tAQ~A~Qqg~~~a~ni~~~l~g~~  335 (405)
T COG1252         309 VPPTAQAAHQQGEYAAKNIKARLKGKP  335 (405)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             998118899999999999999964999


No 158
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=97.75  E-value=0.00012  Score=52.58  Aligned_cols=58  Identities=16%  Similarity=0.365  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             78499999999999970899689800101120258-811322203586334454333466
Q gi|254780808|r   97 QADRELYRLAMQREILSQENLDVIQGEVAGFNTEK-NIISSIVMQDNSMIRCSTVVLTTG  155 (626)
Q Consensus        97 qvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~-~~~~~v~~~~g~~~~~~~viiatG  155 (626)
                      +.|..+|++..++..... +|+.+++.|+++..++ +.+..+.+.+|..+.+.-.|-|||
T Consensus       153 HfDA~k~~~~Lr~~a~~~-GV~~i~~~V~~v~~~~~G~I~sl~l~~G~~i~aDlfIDCTG  211 (457)
T pfam04820       153 HFDAALYARFLRRNAEAR-GVTRVEGKVVDVQLDADGFVTSLRLEDGREVEADLFIDCSG  211 (457)
T ss_pred             EECHHHHHHHHHHHHHHC-CCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCC
T ss_conf             727999999999988857-98899847879998899967899967898887648997787


No 159
>PRK06996 hypothetical protein; Provisional
Probab=97.74  E-value=8.9e-05  Score=53.45  Aligned_cols=146  Identities=19%  Similarity=0.242  Sum_probs=70.7

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHHHCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             987635788988942689999999858----998999980762601246670022112248-999998630399999988
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKL----GASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDALDGLMGRVADA   75 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~----G~~v~L~~~~~~~~ael~Cnps~gg~akg~-L~~Ei~aLgg~m~~~aD~   75 (626)
                      |...+|||+|||||.+|.=.|+.|||.    |++|.|++.++..-   +.+. -..++-.. -++-++.||-.-   .+.
T Consensus         7 m~~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~---~~~d-~Ra~al~~~s~~~L~~lG~w~---~~~   79 (397)
T PRK06996          7 MAAPDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAA---SAND-PRAIALSHGSRVLLETLGAWP---ADA   79 (397)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC---CCCC-CCEEEECHHHHHHHHHCCCCC---CCC
T ss_conf             999998889999279999999999601687896699976898666---7899-939997578999999879984---568


Q ss_pred             HHHHHHHHCCC-CCC-----------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEE-ECC
Q ss_conf             63148873078-785-----------553467878499999999999970899689800-1011202588113222-035
Q gi|254780808|r   76 AGIQFRVLNVK-KGP-----------AVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIV-MQD  141 (626)
Q Consensus        76 ~~i~~r~ln~s-kGp-----------Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~-~~~  141 (626)
                      +.++  -.+.+ +|.           ...++..-+......+...+.+...+ +++.++ ++..+..+...+.... +..
T Consensus        80 ~~i~--~~~v~~~~~~g~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (397)
T PRK06996         80 TPIE--HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTG-VTWLTSTTARAPAQDADGVTLALDTPQ  156 (397)
T ss_pred             CCEE--EEEEEECCCCCCEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECCCEEEEEECCCCEEEEECCCC
T ss_conf             7425--9999405776621126544288522354437999999999997489-879834451457763674589960599


Q ss_pred             C-CCCCCCCCCCCCCC
Q ss_conf             8-63344543334664
Q gi|254780808|r  142 N-SMIRCSTVVLTTGT  156 (626)
Q Consensus       142 g-~~~~~~~viiatGt  156 (626)
                      + ..+.++-+|.|-|.
T Consensus       157 ~~~~i~a~llVgaDG~  172 (397)
T PRK06996        157 GARTLRARIAVQAEGG  172 (397)
T ss_pred             CCEEEEECEEEECCCC
T ss_conf             8659981899995999


No 160
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.72  E-value=4.5e-05  Score=55.58  Aligned_cols=31  Identities=39%  Similarity=0.634  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |||||||+||-=||+.|++.|.+|+++|.+.
T Consensus         1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~   31 (430)
T TIGR03467         1 VVIIGGGLAGLSAAVELARAGVRVTLFEARP   31 (430)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             2998786899999999987899889994899


No 161
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.70  E-value=0.00028  Score=49.96  Aligned_cols=137  Identities=20%  Similarity=0.249  Sum_probs=78.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHH--CC--CCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf             7889889426899999998589-989999807626--01--246670022112248999998630--3999999886314
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTST--IG--SMSCNPAIGGLGKGHLVREIDALD--GLMGRVADAAGIQ   79 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~--~a--el~Cnps~gg~akg~L~~Ei~aLg--g~m~~~aD~~~i~   79 (626)
                      .|+|||||.||.=+|++|+|.| +.|.+||..++-  +|  -..-.|         -.+-++.||  -....+++.....
T Consensus         2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~~~GagI~l~pn---------~~r~L~~lGl~~~~~~~~~~~~~~   72 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGAN---------AVRAIVGLGLGEAYTQVADSTPAP   72 (414)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECHH---------HHHHHHHCCCCHHHHHHHHCCCCC
T ss_conf             89999944899999999985399988999428988888329999989---------999999879916999986226876


Q ss_pred             HHH-------------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCE-EEHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf             887-------------307878555346787849999999999997089968-980010112025881132220358633
Q gi|254780808|r   80 FRV-------------LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLD-VIQGEVAGFNTEKNIISSIVMQDNSMI  145 (626)
Q Consensus        80 ~r~-------------ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~-i~~~eV~~l~~~~~~~~~v~~~~g~~~  145 (626)
                      +..             +..+-.|-....  .+.|..+...+.+.+   |.-. .....|+++...+.. +.|...+|+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~R~~L~~~L~~~~---~~~~~~~~~~v~~v~~~~~~-v~v~f~dG~~~  146 (414)
T TIGR03219        73 WQDIWFEWRNGSDASYLGATIAPGVGQS--SVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEE-VQVLFTDGTEY  146 (414)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCC--EECHHHHHHHHHHHC---CCCEEEECCEEEEEEEECCE-EEEEECCCCEE
T ss_conf             4205787315776321253235788854--284999999998547---66677969899999995892-79998799887


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             4454333466431
Q gi|254780808|r  146 RCSTVVLTTGTFL  158 (626)
Q Consensus       146 ~~~~viiatGtfl  158 (626)
                      .+..||-|-|-..
T Consensus       147 ~aDlVVGADGi~S  159 (414)
T TIGR03219       147 RCDLLIGADGIKS  159 (414)
T ss_pred             ECCEEEECCCCCH
T ss_conf             2268997476423


No 162
>PRK07538 hypothetical protein; Provisional
Probab=97.69  E-value=0.00031  Score=49.64  Aligned_cols=140  Identities=24%  Similarity=0.364  Sum_probs=74.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             788988942689999999858998999980762601246670022-112-24899999863039999998863148873-
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-GLG-KGHLVREIDALDGLMGRVADAAGIQFRVL-   83 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~g-g~a-kg~L~~Ei~aLgg~m~~~aD~~~i~~r~l-   83 (626)
                      ||+|||||.||.=+|+.|++.|++|.++|-.++- .+      +| |+. -.+-+++++.|| +.-.. ++.+++.+-+ 
T Consensus         2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~-~~------~G~gI~l~p~a~~~L~~lG-l~~~l-~~~g~~~~~~~   72 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPEL-RP------LGVGINLLPHAVRELAELG-LLEAL-DAVGIRTRELV   72 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC-CC------CCEEEEECHHHHHHHHHCC-CHHHH-HHHCCCCCEEE
T ss_conf             8999990589999999999789998999369988-87------8528751879999999878-97899-86277763279


Q ss_pred             --CCCCCC----------CCCC-HHHHHHHHHHHHHHHHHHHC-CCCCEE-EHHHHCCCCCCCCCEEEEE----ECCCCC
Q ss_conf             --078785----------5534-67878499999999999970-899689-8001011202588113222----035863
Q gi|254780808|r   84 --NVKKGP----------AVRG-PRTQADRELYRLAMQREILS-QENLDV-IQGEVAGFNTEKNIISSIV----MQDNSM  144 (626)
Q Consensus        84 --n~skGp----------Av~a-lraqvDR~~fs~~vt~~l~~-~pni~i-~~~eV~~l~~~~~~~~~v~----~~~g~~  144 (626)
                        |. .|.          ++.. +.--+.|..+.....+.+.. -+...| .-.+|+++..++..+....    ..++..
T Consensus        73 ~~~~-~G~~i~~~~~g~~~g~~~p~~~i~R~~L~~~L~~~~~e~lg~~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~  151 (413)
T PRK07538         73 FFNR-HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVS  151 (413)
T ss_pred             EECC-CCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCEE
T ss_conf             9969-998987334664457888525650999999999999975699689967789898874995299997157887239


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             344543334664
Q gi|254780808|r  145 IRCSTVVLTTGT  156 (626)
Q Consensus       145 ~~~~~viiatGt  156 (626)
                      +.+..+|-|-|-
T Consensus       152 ~~adllVGADGi  163 (413)
T PRK07538        152 VRADVLIGADGI  163 (413)
T ss_pred             EEECEEEECCCC
T ss_conf             984889988898


No 163
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960   This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=97.69  E-value=0.00016  Score=51.61  Aligned_cols=152  Identities=24%  Similarity=0.365  Sum_probs=81.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHH-----HC--CCCCC--------------CCCC-------CCCC--H
Q ss_conf             7889889426899999998589-98999980762-----60--12466--------------7002-------2112--2
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTS-----TI--GSMSC--------------NPAI-------GGLG--K   55 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~-----~~--ael~C--------------nps~-------gg~a--k   55 (626)
                      ||||||.|.||-=||+.+-+.| .+|.|+|--|-     -+  |+|..              ||-+       ||-+  .
T Consensus         1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~   80 (487)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND   80 (487)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             96898427688999999986468763787057523226899772102356848885488899677889988863278887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC-C--------CCC-CCHHHHHHHHHHHHHHHHHHHCCC------CCE
Q ss_conf             489999986303999999886314887-30787-8--------555-346787849999999999997089------968
Q gi|254780808|r   56 GHLVREIDALDGLMGRVADAAGIQFRV-LNVKK-G--------PAV-RGPRTQADRELYRLAMQREILSQE------NLD  118 (626)
Q Consensus        56 g~L~~Ei~aLgg~m~~~aD~~~i~~r~-ln~sk-G--------pAv-~alraqvDR~~fs~~vt~~l~~~p------ni~  118 (626)
                      --|+|-|--.+.-.....+.+++.|+. .+..- |        |.+ .+..+-+=+     .+.+.+...-      --+
T Consensus        81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~-----~L~~~a~~~gskDsnlv~~  155 (487)
T TIGR01813        81 PELVRTLAEESADAVDWLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQ-----KLSKKAKKEGSKDSNLVET  155 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHCCCCCCCHHHH
T ss_conf             89999999878899887764221000111443278764643034788767840117-----7788774337743211221


Q ss_pred             EEHHHHCCCCCCCC-CEEEEEECC------------CCCCCCCCCCCCCCCCC-HHHHH
Q ss_conf             98001011202588-113222035------------86334454333466431-01344
Q gi|254780808|r  119 VIQGEVAGFNTEKN-IISSIVMQD------------NSMIRCSTVVLTTGTFL-RGVIH  163 (626)
Q Consensus       119 i~~~eV~~l~~~~~-~~~~v~~~~------------g~~~~~~~viiatGtfl-~g~~~  163 (626)
                      -.+-+|++|+.++. .|+||....            -....+++||||||-|- +-.-.
T Consensus       156 ~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~  214 (487)
T TIGR01813       156 RLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKEL  214 (487)
T ss_pred             HCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHH
T ss_conf             00672799998697118999962122588777787326755060689757613333899


No 164
>PRK05868 hypothetical protein; Validated
Probab=97.69  E-value=0.00011  Score=52.82  Aligned_cols=137  Identities=13%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH--CCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf             889889426899999998589989999807626--012466700221122489999986303---999999886314887
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST--IGSMSCNPAIGGLGKGHLVREIDALDG---LMGRVADAAGIQFRV   82 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~--~ael~Cnps~gg~akg~L~~Ei~aLgg---~m~~~aD~~~i~~r~   82 (626)
                      |+|||||-||.=+|+.|+|.|++|.++|-.|.-  .|..+.   |.+.|    ++-++.||-   +..+.....++++  
T Consensus         4 VlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~---l~~~a----~~vL~~mGl~d~~~~~~~~~~~~~~--   74 (372)
T PRK05868          4 VLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAID---VRGPA----LDVLERMGLLAAAQERKTRIRGASV--   74 (372)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE---ECHHH----HHHHHHCCCHHHHHHHCCCCCCEEE--
T ss_conf             99989888999999999858998899957999888996674---68699----9999987897899861578642399--


Q ss_pred             HCCC---------CCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             3078---------785553467---8784999999999999708996898-00101120258811322203586334454
Q gi|254780808|r   83 LNVK---------KGPAVRGPR---TQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCST  149 (626)
Q Consensus        83 ln~s---------kGpAv~alr---aqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~  149 (626)
                      .+..         ..|.+....   .-+-|....+.+.+.+  .|+++++ ...|+.+..+... +.|...+|....+..
T Consensus        75 ~d~~G~~l~~~~~~~~~g~~~~~~~~~i~R~dL~~~L~~a~--~~~v~~~~g~~v~~i~~~~~~-V~V~f~dg~~~~~Dl  151 (372)
T PRK05868         75 VDRDGNELSRDTESTPTGGPINSPDIELLRDDLVELLYGAT--QPTVEYLFDDSISTLQDDGAA-VRVTFERAAAREFDL  151 (372)
T ss_pred             EECCCCEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHC--CCCEEEEECCEEEEEEECCCE-EEEEEECCCEEEEEE
T ss_conf             94899898752666655675688400031999999998634--588099957888999964997-999990798578658


Q ss_pred             CCCCCCC
Q ss_conf             3334664
Q gi|254780808|r  150 VVLTTGT  156 (626)
Q Consensus       150 viiatGt  156 (626)
                      ||-|-|.
T Consensus       152 VIGADGi  158 (372)
T PRK05868        152 VIGADGL  158 (372)
T ss_pred             EEECCCC
T ss_conf             9974787


No 165
>PRK08132 hypothetical protein; Provisional
Probab=97.68  E-value=0.0004  Score=48.83  Aligned_cols=142  Identities=20%  Similarity=0.233  Sum_probs=78.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf             6357889889426899999998589989999807626012466700221122489999986303999999886314----
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ----   79 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~----   79 (626)
                      .+.||+|||||-+|.-+|..|+++|++|.++|-++.... .+  -+++=..  --++-++.+| +.-.+.+. ++.    
T Consensus        22 ~~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~-~p--RA~~~~~--rtmeil~~lG-l~~~i~~~-g~~~~~~   94 (549)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST-GS--RAICFSK--RSLEIFDRLG-CGERMVDK-GVSWNVG   94 (549)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CC--CEEEECH--HHHHHHHHCC-CHHHHHHC-CCCCCCC
T ss_conf             869999999257999999999987999999959999999-99--7888898--9999999869-92899961-7744464


Q ss_pred             -----------HHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEE-EEECCCC-
Q ss_conf             -----------8873078--78555346787849999999999997089968980-010112025881132-2203586-
Q gi|254780808|r   80 -----------FRVLNVK--KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISS-IVMQDNS-  143 (626)
Q Consensus        80 -----------~r~ln~s--kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~-v~~~~g~-  143 (626)
                                 |.++...  +-|..-.+ .|   ..+-....+.+.++|+++|.. -||+++..++..+.. +.+.+|. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~l-~Q---~~lE~~L~~~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~  170 (549)
T PRK08132         95 KVFLRDEEVYRFDLLPEPGHRRPAFINL-QQ---YYIEGYLVDRAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDGPY  170 (549)
T ss_pred             EEEECCCEEEEECCCCCCCCCCCCEEEC-CH---HHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCE
T ss_conf             4885686577604788888766815867-99---9999999999986899789957689999984994699998799868


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             3344543334664
Q gi|254780808|r  144 MIRCSTVVLTTGT  156 (626)
Q Consensus       144 ~~~~~~viiatGt  156 (626)
                      .+.|+-+|-|-|.
T Consensus       171 ~vrA~ylVGaDGa  183 (549)
T PRK08132        171 TLEADWVIACDGA  183 (549)
T ss_pred             EEEEEEEEECCCC
T ss_conf             9998899863778


No 166
>KOG0029 consensus
Probab=97.66  E-value=7.6e-05  Score=53.96  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             63578898894268999999985899899998076
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      ++.+|||||||+||.=||-||...|++|+++|-|-
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029          14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             88838998985789999999997598259997147


No 167
>PRK06184 hypothetical protein; Provisional
Probab=97.65  E-value=8.7e-05  Score=53.52  Aligned_cols=40  Identities=30%  Similarity=0.467  Sum_probs=35.5

Q ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             987-6357889889426899999998589989999807626
Q gi|254780808|r    1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      |.+ .++||+|||||.+|.=+|+.||+.|++|.++|-+++.
T Consensus         1 m~~~~tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~   41 (503)
T PRK06184          1 MTEYTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTP   41 (503)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99888579899990999999999999779989999489998


No 168
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253   This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=97.63  E-value=5.5e-05  Score=54.96  Aligned_cols=115  Identities=30%  Similarity=0.486  Sum_probs=71.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
Q ss_conf             578898894268999999985899899998076260124667002211224899999863039999-9988631488730
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGR-VADAAGIQFRVLN   84 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~-~aD~~~i~~r~ln   84 (626)
                      |||.|||||-+|-=||=.||+.|.+|.|+|-+++++  =+|==||    .=-|++|-|-=.+++-+ +...     ||..
T Consensus         1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~--KPCGGAI----Pp~li~EFdiP~~li~~r~~~~-----~miS   69 (408)
T TIGR02023         1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRI--KPCGGAI----PPCLIEEFDIPDDLIDRRVRKA-----RMIS   69 (408)
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCC--CCCCCCC----CHHHCCCCCCCHHHHHHHHCEE-----EEEC
T ss_conf             967898168506899999986497488630243265--8888866----5110123578888997320064-----6777


Q ss_pred             CC-----CC-----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC
Q ss_conf             78-----78-----55534678784999999999999708996898001011202588
Q gi|254780808|r   85 VK-----KG-----PAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN  132 (626)
Q Consensus        85 ~s-----kG-----pAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~  132 (626)
                      .|     -+     |-...==+=|||+.|=.+.+++=..- .=+++.+.+..|..+..
T Consensus        70 P~Gq~~~v~~~~~~P~~~~yVGMVrREvFD~~LReRA~ka-GAe~~~g~f~~~~~d~~  126 (408)
T TIGR02023        70 PSGQEIAVEIKVDIPVEDGYVGMVRREVFDEYLRERAQKA-GAELIEGLFKKLERDED  126 (408)
T ss_pred             CCCCCEECCCEEECCCCCCEEEEEEHHHCCHHHHHHHHHH-HHHHHHHHHHHHCCCCC
T ss_conf             7886100242024365886677755144157899998762-14766567552015677


No 169
>KOG2614 consensus
Probab=97.62  E-value=0.00072  Score=47.02  Aligned_cols=141  Identities=18%  Similarity=0.306  Sum_probs=73.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148--873-
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF--RVL-   83 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~--r~l-   83 (626)
                      +|+|||||++|+=+|.+++|.|.+|..+|.+-+--++   --|++ ++.+ =.+-|+|.|  ...-.+.-++..  |++ 
T Consensus         4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~---g~si~-L~~n-g~~aLkai~--~~e~i~~~gip~~~~v~~   76 (420)
T KOG2614           4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE---GTSIN-LALN-GWRALKAIG--LKEQIREQGIPLGGRVLI   76 (420)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC---CCCEE-EHHH-HHHHHHHCC--CHHHHHHHCCCCCCEEEE
T ss_conf             4899888389899999998758748998621465558---84112-1442-899998726--189999716755652643


Q ss_pred             CCCCC-CCCC---------CHHHHHHHHHHHHHHHHHHHCCCCCEEEH-----HHHCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             07878-5553---------46787849999999999997089968980-----010112025881132220358633445
Q gi|254780808|r   84 NVKKG-PAVR---------GPRTQADRELYRLAMQREILSQENLDVIQ-----GEVAGFNTEKNIISSIVMQDNSMIRCS  148 (626)
Q Consensus        84 n~skG-pAv~---------alraqvDR~~fs~~vt~~l~~~pni~i~~-----~eV~~l~~~~~~~~~v~~~~g~~~~~~  148 (626)
                      -..+| +-++         -+|+ +-|.+-.....+.+. +++|...-     -.+.++..- +.-.-|.+.+|..+.+.
T Consensus        77 ~~~sg~~~~~~~~~~~~~~i~r~-~~r~ll~~lL~~a~~-~~~ikf~~~~~~~~~~~~~~~~-~~~~~v~l~~g~~~~~d  153 (420)
T KOG2614          77 HGDSGKEVSRILYGEPDEYILRI-NRRNLLQELLAEALP-TGTIKFHSNLSCTSKDVEIETL-GKKLVVHLSDGTTVKGD  153 (420)
T ss_pred             ECCCCCEEEECCCCCCHHHHHHH-HHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCEEEEC-CCCCCEECCCCCEEEEE
T ss_conf             14788756740158835777788-899999999973168-8715512110011344231000-34443012787478740


Q ss_pred             CCCCCCCCC
Q ss_conf             433346643
Q gi|254780808|r  149 TVVLTTGTF  157 (626)
Q Consensus       149 ~viiatGtf  157 (626)
                      -+|-+-|-.
T Consensus       154 lligCDGa~  162 (420)
T KOG2614         154 LLIGCDGAY  162 (420)
T ss_pred             EEEECCCHH
T ss_conf             899757528


No 170
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.59  E-value=0.00038  Score=48.98  Aligned_cols=107  Identities=14%  Similarity=0.295  Sum_probs=60.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8898894268999999985899--89999807626012466700221122489999986303999999886314887307
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV   85 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~   85 (626)
                      |+|||||+||.-||-++.|++-  ++.+++..+. +.-..|.=+.       .      +++.+   .|...        
T Consensus         4 iVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~-~~y~~~~lp~-------~------~~~~~---~~~~~--------   58 (438)
T PRK13512          4 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD-MSFANCALPY-------V------IGEVV---EDRKY--------   58 (438)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCHHHH-------H------HCCCC---CCHHH--------
T ss_conf             9998984999999999994391999999968998-8876236679-------8------77886---65243--------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCC
Q ss_conf             878555346787849999999999997089968980-0101120258811322203586--3344543334664
Q gi|254780808|r   86 KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTTGT  156 (626)
Q Consensus        86 skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~--~~~~~~viiatGt  156 (626)
                           .-   . ..-        +......||++.- .+|++|..+...+.......+.  ++.=...|+|||.
T Consensus        59 -----~~---~-~~~--------~~~~~~~~I~v~~~~~v~~Id~~~k~v~~~~~~~~~~~e~~YDkLviATGs  115 (438)
T PRK13512         59 -----AL---A-YTP--------EKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA  115 (438)
T ss_pred             -----HH---C-CCH--------HHHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCEEECCCCEEEEECCC
T ss_conf             -----22---0-698--------999987797999276899980666789995066674232134589996798


No 171
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59  E-value=0.0001  Score=52.99  Aligned_cols=109  Identities=28%  Similarity=0.500  Sum_probs=63.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998076260124-----6670022112248999998630399999988631
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM-----SCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael-----~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      ..|||.|||||-||.-||..+||.|++|-|+.-|   ||-.     .--|=|+-                          
T Consensus       210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aer---fGGQvldT~~IENfIsv--------------------------  260 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---FGGQVLDTMGIENFISV--------------------------  260 (520)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHH---HCCEECCCCCHHHEECC--------------------------
T ss_conf             8834999868863167899998612111001565---18820000033330056--------------------------


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCC--CCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             488730787855534678784999999999999708996898001-011202--58811322203586334454333466
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNT--EKNIISSIVMQDNSMIRCSTVVLTTG  155 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~--~~~~~~~v~~~~g~~~~~~~viiatG  155 (626)
                                |..-++       .++.+..+-+...+ +++.... ++.|..  .++....|.+..|..+.++.+|++||
T Consensus       261 ----------~~teGp-------kl~~ale~Hv~~Y~-vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstG  322 (520)
T COG3634         261 ----------PETEGP-------KLAAALEAHVKQYD-VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATG  322 (520)
T ss_pred             ----------CCCCCH-------HHHHHHHHHHHHCC-CHHHHHHHHHCCEECCCCCCCEEEEECCCCEECCCEEEEECC
T ss_conf             ----------545466-------89999999876468-245533434202015788860799954783511316998427


Q ss_pred             CCCH
Q ss_conf             4310
Q gi|254780808|r  156 TFLR  159 (626)
Q Consensus       156 tfl~  159 (626)
                      .--+
T Consensus       323 ArWR  326 (520)
T COG3634         323 ARWR  326 (520)
T ss_pred             CCHH
T ss_conf             6420


No 172
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.58  E-value=0.00011  Score=52.75  Aligned_cols=31  Identities=39%  Similarity=0.523  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Q ss_conf             889889426899999998589--9899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLG--ASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~   38 (626)
                      |+|||||+||.=|||.|++.|  ++|+|+|-+.
T Consensus         3 V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~   35 (452)
T PRK11883          3 VAIIGGGISGLTAAYRLHKKGPDADITLLEASD   35 (452)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             999998789999999999649799789998899


No 173
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295   This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.55  E-value=0.00027  Score=50.01  Aligned_cols=146  Identities=15%  Similarity=0.283  Sum_probs=96.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCHHHCCCCCCC--C------CCCC------CC--HHHHHHHHHHH
Q ss_conf             7889889426899999998589-----9899998076260124667--0------0221------12--24899999863
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLG-----ASTALITHKTSTIGSMSCN--P------AIGG------LG--KGHLVREIDAL   65 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G-----~~v~L~~~~~~~~ael~Cn--p------s~gg------~a--kg~L~~Ei~aL   65 (626)
                      ||||||||++|.==|++|++.|     ++|.|+|.+.-.=+.-+-+  .      |-|+      +|  .-|+-.++...
T Consensus         1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~   80 (425)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPF   80 (425)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf             97888565899999999850677557615898656574424686423565046876899999985386331257886013


Q ss_pred             -HHHHHHH--HHHHH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCC-----
Q ss_conf             -0399999--98863---1488730787855534678784999999999999708996898-0010112025881-----
Q gi|254780808|r   66 -DGLMGRV--ADAAG---IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNI-----  133 (626)
Q Consensus        66 -gg~m~~~--aD~~~---i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~-----  133 (626)
                       ..-|-.+  .|...   +++   |.+ --.+.||+.=|.=..+.+..-+.|...++|+++ -.++.+|..+.+.     
T Consensus        81 ratpI~~IhVSD~g~fG~~~~---~~~-~~~~~aLGyVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveql  156 (425)
T TIGR01984        81 RATPIKDIHVSDQGHFGATEL---RAS-EFGLPALGYVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQL  156 (425)
T ss_pred             CCCCCCEEEEEECCCEEEEEE---CHH-HCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECC
T ss_conf             678775168864583001341---253-6287645314217899999999986256651125753211210578630005


Q ss_pred             --------EEEEEE-CCCC----CCCCCCCCCCCCC
Q ss_conf             --------132220-3586----3344543334664
Q gi|254780808|r  134 --------ISSIVM-QDNS----MIRCSTVVLTTGT  156 (626)
Q Consensus       134 --------~~~v~~-~~g~----~~~~~~viiatGt  156 (626)
                              +..|.+ .++.    .+.|+-+|.|-|-
T Consensus       157 PradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGG  192 (425)
T TIGR01984       157 PRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGG  192 (425)
T ss_pred             CCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCC
T ss_conf             666655103578883088756405553088985586


No 174
>PRK07233 hypothetical protein; Provisional
Probab=97.55  E-value=0.00011  Score=52.70  Aligned_cols=31  Identities=32%  Similarity=0.476  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+|||||+||-=||+.|++.|.+|+++|-+.
T Consensus         2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~   32 (430)
T PRK07233          2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADD   32 (430)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             8999977899999999983999889995899


No 175
>PRK07588 hypothetical protein; Provisional
Probab=97.54  E-value=0.00017  Score=51.46  Aligned_cols=136  Identities=17%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH--HCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf             88988942689999999858998999980762--6012466700221122489999986303---999999886314887
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTS--TIGSMSCNPAIGGLGKGHLVREIDALDG---LMGRVADAAGIQFRV   82 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~--~~ael~Cnps~gg~akg~L~~Ei~aLgg---~m~~~aD~~~i~~r~   82 (626)
                      |+|||||.||.=+|+.|+|.|+.|.++|-.|+  ..|..+.   +.+    .=++-++.||=   +.........+  +.
T Consensus         3 VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G~~i~---l~~----~~~~vl~~lGl~d~l~~~~~~~~~~--~~   73 (391)
T PRK07588          3 IAISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGGYMVD---FWG----VGYEVAKRMGITDQLAEAGYQIEHI--RS   73 (391)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE---ECC----HHHHHHHHCCCHHHHHHCCCCCEEE--EE
T ss_conf             99999328999999999868999899903898887733872---383----9999999879938998527885069--99


Q ss_pred             HCCCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             3078785-------------5534678784999999999999708996898-0010112025881132220358633445
Q gi|254780808|r   83 LNVKKGP-------------AVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCS  148 (626)
Q Consensus        83 ln~skGp-------------Av~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~  148 (626)
                      .+. .|-             .+... ..+-|..+.+.+.+.++  ++++++ ..+|+++...++. +.|...+|....+.
T Consensus        74 ~~~-~G~~~~~~~~~~~~~~~~~~~-~~i~R~dL~~~L~~~~~--~~v~v~~g~~v~~i~~~~dg-V~v~f~dG~~~~~D  148 (391)
T PRK07588         74 VGP-TGRVKADLNVDVFRRMVGDDF-TSLPRGDLAATIYTTIE--GQVETIFDDSIATIDEHRDG-VRLTLERGTPRDFD  148 (391)
T ss_pred             ECC-CCCEEEECCCHHHCCCCCCCC-EEECHHHHHHHHHHHCC--CCCEEEECCEEEEEEECCCE-EEEEECCCCEEEEE
T ss_conf             999-998887437123111347752-14539999999997514--48789979999999962995-89998799888875


Q ss_pred             CCCCCCCCC
Q ss_conf             433346643
Q gi|254780808|r  149 TVVLTTGTF  157 (626)
Q Consensus       149 ~viiatGtf  157 (626)
                      .||-|-|-.
T Consensus       149 lvVGADGi~  157 (391)
T PRK07588        149 LVIGADGLH  157 (391)
T ss_pred             EEEECCCCC
T ss_conf             999548764


No 176
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.52  E-value=0.00014  Score=52.14  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             HHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC------CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9997089968980-0101120258811322203586------3344543334664310134443
Q gi|254780808|r  109 REILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS------MIRCSTVVLTTGTFLRGVIHIG  165 (626)
Q Consensus       109 ~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~------~~~~~~viiatGtfl~g~~~~g  165 (626)
                      .....+||++|.- ..|+.|..+..+.++|....+.      ...++-|||++|.+-+..+..-
T Consensus       210 ~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~  273 (542)
T COG2303         210 KPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL  273 (542)
T ss_pred             HHHHHCCCCEEECCCEEEEEEEECCEEEEEEEEECCCCCEEEEECCCEEEECCCCCCCHHHHHH
T ss_conf             6675089838963788999999898689999996898633688517879985676379999986


No 177
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.52  E-value=0.00026  Score=50.15  Aligned_cols=45  Identities=20%  Similarity=0.072  Sum_probs=38.2

Q ss_pred             HHHHHCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             765403341566213-3043346666667789999987420334565
Q gi|254780808|r  354 TLETKKISGLFLAGQ-INGTTGYEEAAAQGLVAGINSARKSNKLDCI  399 (626)
Q Consensus       354 tLe~k~~~~LffAGQ-I~GteGYeEAAAqGl~AGiNa~~~~~~~~p~  399 (626)
                      +++| .+||+|.||- ++|-.==++|.++|-.|+....+++.|+.++
T Consensus       427 ~~~T-s~~gVFA~GD~~~G~~~vv~Ai~~Gr~AA~~I~~~L~G~~~~  472 (472)
T PRK12810        427 AYQT-SNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGSTPL  472 (472)
T ss_pred             CCCC-CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8745-999999836877781699999999999999999984799899


No 178
>PRK06116 glutathione reductase; Validated
Probab=97.50  E-value=0.00072  Score=47.00  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=42.6

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHHHHCCCC------CC-CCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf             567765403341566213304334666-6667789999987420334------56-54653-210799999988607877
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSARKSNKL------DC-ICFSR-TDSYIGVMIDDLTSKGVL  421 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~~~~~~~------~p-~~l~R-~eaYiGVlIDDLitkg~~  421 (626)
                      .|..+|| .+||+|.||-+||---..- |..||.+|+-|+.-.....      -| .++.- .-|.+|.--+++..++..
T Consensus       287 vd~~~~T-s~~~IyA~GDv~g~~~lah~A~~~g~~~a~~i~~~~~~~~~~~~~iP~~vft~PeiA~VGlte~eA~~~~~~  365 (450)
T PRK06116        287 VDEYQNT-NVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAIEQYGD  365 (450)
T ss_pred             CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCC
T ss_conf             7877777-886337500146876766899999999999981899976525686336885264018887899999973799


Q ss_pred             CCHHH
Q ss_conf             40244
Q gi|254780808|r  422 EPYRM  426 (626)
Q Consensus       422 EPYRM  426 (626)
                      ...+.
T Consensus       366 ~~v~v  370 (450)
T PRK06116        366 DNVKV  370 (450)
T ss_pred             CCEEE
T ss_conf             75899


No 179
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.50  E-value=0.00072  Score=47.00  Aligned_cols=88  Identities=22%  Similarity=0.380  Sum_probs=51.2

Q ss_pred             HHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCC-----CCCCCC
Q ss_conf             340010011000121102354565677654033415662133043346-66666778999998742033-----456546
Q gi|254780808|r  328 GLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKSNK-----LDCICF  401 (626)
Q Consensus       328 GLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY-eEAAAqGl~AGiNa~~~~~~-----~~p~~l  401 (626)
                      |||++.+-     .++-++   ..|..+|| .+||+|.+|-+||.--- -.|..||.+|+-|+.-.-..     .++.++
T Consensus       280 ~l~~~gv~-----~~~g~I---~Vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~a~~~~~g~~~~~~~~~ip~~vf  350 (464)
T PRK05976        280 GLENTDLD-----VEGGFI---RIDDFCQT-SMRHIYAIGDVIGEPMLAHRAMAQGEMVAEHIAGKKREPIDYAIVAVCF  350 (464)
T ss_pred             CCCCCCEE-----ECCCCE---ECCCCCCC-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             73227766-----217836---24676535-8871999605689877732899999999998659997433455660302


Q ss_pred             C-CCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf             5-321079999998860787740244
Q gi|254780808|r  402 S-RTDSYIGVMIDDLTSKGVLEPYRM  426 (626)
Q Consensus       402 ~-R~eaYiGVlIDDLitkg~~EPYRM  426 (626)
                      . =.-|++|.--+++..+|.  +|+.
T Consensus       351 t~PeiA~VGlte~~a~~~g~--~~~~  374 (464)
T PRK05976        351 TDPEVVSVGLTPDEAKEAGY--DVKV  374 (464)
T ss_pred             CCCCEEEEECCHHHHHHCCC--CEEE
T ss_conf             37536886488999987699--8899


No 180
>PRK12831 putative oxidoreductase; Provisional
Probab=97.50  E-value=0.00027  Score=50.07  Aligned_cols=75  Identities=25%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEE-ECCCHHHHHHHHH
Q ss_conf             454347766689889999998754340010011000121102354565677654033415662133-0433466666677
Q gi|254780808|r  304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI-NGTTGYEEAAAQG  382 (626)
Q Consensus       304 ~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI-~GteGYeEAAAqG  382 (626)
                      .+-=+|+.....+      +...+|+   ++-+.|+-+-        -+.+++| .+||+|.||-+ +|-+-=++|.++|
T Consensus       388 Vi~AiGq~~~~~~------~~~~~gi---~~~~~g~i~~--------~~~~~~T-s~~gVFa~GD~~~G~~~vV~Ai~~G  449 (464)
T PRK12831        388 VIMSLGTSPNPLI------SSTTPGL---EINKRGCIVA--------DEETGLT-SIEGVYAGGDAVTGAATVILAMGAG  449 (464)
T ss_pred             EEECCCCCCCCCC------CCCCCCE---EECCCCCEEE--------CCCCCCC-CCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf             9999868987430------0136680---2779998884--------7899842-8999998278676833999999999


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             89999987420334
Q gi|254780808|r  383 LVAGINSARKSNKL  396 (626)
Q Consensus       383 l~AGiNa~~~~~~~  396 (626)
                      -.|+.....+++|+
T Consensus       450 r~AA~~I~~yL~gk  463 (464)
T PRK12831        450 KKAAKAIDEYLSKK  463 (464)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999997359


No 181
>PRK06753 hypothetical protein; Provisional
Probab=97.50  E-value=3.3e-05  Score=56.56  Aligned_cols=139  Identities=17%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HH---
Q ss_conf             889889426899999998589989999807626012466700221122489999986303999999886314---88---
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ---FR---   81 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~---~r---   81 (626)
                      |+|||||.||+=+|+.|++.|++|.++|.+++-- +....=+++    ..-.+-++.+| +.-.+.. .+.+   +.   
T Consensus         3 V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~-~~g~gi~l~----~~~l~~L~~~g-l~~~l~~-~~~~~~~~~~~~   75 (373)
T PRK06753          3 IAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVT-EIGAGIGIG----DNVLKKLGNHD-LAKGIKN-AGQILSTMNVLD   75 (373)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCEEEEEC----HHHHHHHHHCC-CHHHHHH-HCCCCCEEEEEE
T ss_conf             9999945899999999997799999988899988-776199988----99999999879-8489996-077873299990


Q ss_pred             ----HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             ----7307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r   82 ----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        82 ----~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf  157 (626)
                          .++..+.+.. .+...+.|..+.+...+.+... .| ....+|+++..+++. +.+...+|....+..||-|-|-.
T Consensus        76 ~~g~~~~~~~~~~~-~~~~~i~R~~L~~~L~~~~~~~-~i-~~~~~~~~i~~~~~~-v~v~~~dg~~~~~DlvVGADG~~  151 (373)
T PRK06753         76 DKGTLLTKVKLKSN-TLNVTLPRQTLIDIIKSYVKED-TI-FTNHEVTKIENETDK-VTIHFAEQESEAFDLCIGADGIH  151 (373)
T ss_pred             CCCCEEEEEECCCC-CCEEEECHHHHHHHHHHHCCCC-EE-EECCEEEEEEEECCE-EEEEECCCCEEEEEEEEECCCCC
T ss_conf             99989676204778-8348980999999998747458-79-958899999930998-99998799798887999748877


No 182
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.50  E-value=0.0007  Score=47.08  Aligned_cols=96  Identities=22%  Similarity=0.390  Sum_probs=65.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      .|+|||||.-|+|+|..++++|.+|.++++.+.-+.                 +.                         
T Consensus       151 ~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~-----------------~~-------------------------  188 (443)
T PRK09564        151 RIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILP-----------------DS-------------------------  188 (443)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-----------------CC-------------------------
T ss_conf             599999709999999999866988999995783455-----------------66-------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             7855534678784999999999999708996898001-011202588113222035863344543334664310
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                                 .|.+ .++.+++.++.+ +|++.-++ |+++ ..++.+..+.+.. ..+.+..|++++|---+
T Consensus       189 -----------~d~~-~~~~~~~~l~~~-gv~i~~~~~v~~i-~~~~~~~~v~~~~-~~i~~D~vi~a~G~~Pn  247 (443)
T PRK09564        189 -----------FDKE-ITDVMEEELREK-GVELHTSEFVKSL-IGEDKVEGVVTNK-GEYEADVVILSTGIKPN  247 (443)
T ss_pred             -----------CCHH-HHHHHHHHHHHC-CCEEEECCEEEEE-EECCCEEEEEECC-CEEEEEEEEECCCCCCC
T ss_conf             -----------7899-999999999977-9799989989999-9269899999779-88972389995588535


No 183
>PRK08244 hypothetical protein; Provisional
Probab=97.47  E-value=0.00018  Score=51.22  Aligned_cols=36  Identities=36%  Similarity=0.480  Sum_probs=33.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             357889889426899999998589989999807626
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      ++||+|||||.+|.=+|+.||+.|++|.++|.+++.
T Consensus         2 ~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~   37 (494)
T PRK08244          2 KTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEP   37 (494)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             989999994789999999999779999999089998


No 184
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.46  E-value=0.00089  Score=46.34  Aligned_cols=95  Identities=25%  Similarity=0.348  Sum_probs=53.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      +|.|||||-+|+|+|.+++++|++|.|++..+.-.+.+.=                                        
T Consensus       138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------------------------------------  177 (415)
T COG0446         138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------------------------------------  177 (415)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----------------------------------------
T ss_conf             3999893499999999998779938999756642331121----------------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEE--EEECCCCCCCCCCCCCCCCC
Q ss_conf             785553467878499999999999970899689-80010112025881132--22035863344543334664
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDV-IQGEVAGFNTEKNIISS--IVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~--v~~~~g~~~~~~~viiatGt  156 (626)
                                    ..++..+++.++.+. |++ ....+.++....+....  +.+..+..+.+..+++++|-
T Consensus       178 --------------~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~  235 (415)
T COG0446         178 --------------PEVAEELAELLEKYG-VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE  235 (415)
T ss_pred             --------------HHHHHHHHHHHHHCC-CEEECCCEEEEEEECCCCEEEEEEEEEEEEEECCCEEEECCCC
T ss_conf             --------------889999999999729-4898265269999258621554456653035223369878975


No 185
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.45  E-value=0.00099  Score=46.03  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             HHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHH
Q ss_conf             6776540334156621330433466-666677899999874
Q gi|254780808|r  352 FPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSAR  391 (626)
Q Consensus       352 ~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~  391 (626)
                      +..++| .+||+|.||-+||.--.. -|..||.+|+-|+.-
T Consensus       298 d~~~rT-s~~~IyA~GDv~g~~~l~h~A~~qg~ia~~n~~g  337 (467)
T PRK07845        298 DRVSRT-SVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG  337 (467)
T ss_pred             CCCCCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             987665-8770999704578867655899999999999707


No 186
>KOG2404 consensus
Probab=97.44  E-value=0.00076  Score=46.86  Aligned_cols=141  Identities=23%  Similarity=0.272  Sum_probs=84.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC--------------------------CCCCCCCCCCCCCHHHHHH
Q ss_conf             78898894268999999985899899998076260--------------------------1246670022112248999
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI--------------------------GSMSCNPAIGGLGKGHLVR   60 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~--------------------------ael~Cnps~gg~akg~L~~   60 (626)
                      .|+|||+||||--|+.-+-..|-.|.|++-....=                          -||--+-++ ..|||-=+.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl-~saksk~~~   89 (477)
T KOG2404          11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTL-SSAKSKGVP   89 (477)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHH-HHCCCCCCH
T ss_conf             0799877403235677787448759998246776775201025767776145653165667677764024-320347868


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------C-----------CCCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99863039999998863148873-----------0-----------7878--5553467878499999999999970899
Q gi|254780808|r   61 EIDALDGLMGRVADAAGIQFRVL-----------N-----------VKKG--PAVRGPRTQADRELYRLAMQREILSQEN  116 (626)
Q Consensus        61 Ei~aLgg~m~~~aD~~~i~~r~l-----------n-----------~skG--pAv~alraqvDR~~fs~~vt~~l~~~pn  116 (626)
                      |      +|.+.|..++.-.++|           +           ++-|  |++.-+ ++    ..+....+.-+.+|+
T Consensus        90 e------Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei-~~----~L~~~l~k~as~~pe  158 (477)
T KOG2404          90 E------LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEI-VK----ALSTRLKKKASENPE  158 (477)
T ss_pred             H------HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHH-HH----HHHHHHHHHHHCCHH
T ss_conf             9------999987368878999863306266899872587877534568999996089-99----999998876531807


Q ss_pred             CE--EEHHHHCCCCCCCCCEEEEEECCC----CCCCCCCCCCCCCCCCH
Q ss_conf             68--980010112025881132220358----63344543334664310
Q gi|254780808|r  117 LD--VIQGEVAGFNTEKNIISSIVMQDN----SMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       117 i~--i~~~eV~~l~~~~~~~~~v~~~~g----~~~~~~~viiatGtfl~  159 (626)
                      +-  ..+.+|++|..+++.+.||.-.+.    ..+...+||+|||-|--
T Consensus       159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404         159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHHHHHCCEEEEEECCCCEEEEEEEECCCCCCCCEECCCEEEECCCCCC
T ss_conf             7732313624564427880777999757897250104736995277675


No 187
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.44  E-value=0.00087  Score=46.41  Aligned_cols=39  Identities=15%  Similarity=0.332  Sum_probs=29.3

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHH
Q ss_conf             56776540334156621330433466-66667789999987
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSA  390 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~  390 (626)
                      .|..||| .+||+|.||-++|-.-.. -|..||.+|+-|+.
T Consensus       295 VD~~~~T-s~p~IyA~GDv~g~~~lah~A~~qg~~aa~~i~  334 (465)
T PRK05249        295 VNSNYQT-AVPHIYAVGDVIGFPSLASASMDQGRIAAQHAV  334 (465)
T ss_pred             ECCCCCC-CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             7979877-998707511257876772678999999999974


No 188
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.43  E-value=0.00018  Score=51.21  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=34.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHC
Q ss_conf             63578898894268999999985-899899998076260
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHKTSTI   41 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar-~G~~v~L~~~~~~~~   41 (626)
                      .++||.|||||-+|--+|+.||| .|++|++++-+++..
T Consensus        31 ~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~~~~   69 (634)
T PRK08294         31 DEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKPGRL   69 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             858889999658999999998713799889992799999


No 189
>PRK13984 putative oxidoreductase; Provisional
Probab=97.37  E-value=0.00047  Score=48.33  Aligned_cols=56  Identities=27%  Similarity=0.352  Sum_probs=40.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf             889889426899999998589989999807626012466-700221122489999986
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-NPAIGGLGKGHLVREIDA   64 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-nps~gg~akg~L~~Ei~a   64 (626)
                      |-|||+|-||--||++||++|+.|..||..+.-=|.|.- =|.+. +-|..|-+|++.
T Consensus       286 VAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fR-Lpk~vv~rei~~  342 (604)
T PRK13984        286 VAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYR-LPDEALDKDIAF  342 (604)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCC-CCHHHHHHHHHH
T ss_conf             999898689999999999869868997456778972331587222-878999999999


No 190
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in  Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=97.36  E-value=0.00025  Score=50.32  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=31.9

Q ss_pred             CCCEEEECCCHHHHHHHH-HHHHCCCCEEEEECCH
Q ss_conf             357889889426899999-9985899899998076
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAA-VAAKLGASTALITHKT   38 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~-~~Ar~G~~v~L~~~~~   38 (626)
                      .||-||||||+||+=.|- .||+.|-+|+++|-|-
T Consensus         1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~   35 (390)
T TIGR00031         1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRN   35 (390)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             95179986636779999999997099889997306


No 191
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104   Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=97.35  E-value=0.00025  Score=50.30  Aligned_cols=32  Identities=44%  Similarity=0.609  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             78898894268999999985899899998076
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      .|||||||-||-=||.-||++|.+|.|+|..-
T Consensus         3 ~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~   34 (499)
T TIGR02733         3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA   34 (499)
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             06998187267899999985399679997401


No 192
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.32  E-value=0.00068  Score=47.20  Aligned_cols=120  Identities=22%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE-EECCCHHHHHHHH
Q ss_conf             645434776668988999999875434001001100012110235456567765403341566213-3043346666667
Q gi|254780808|r  303 DVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ-INGTTGYEEAAAQ  381 (626)
Q Consensus       303 ~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ-I~GteGYeEAAAq  381 (626)
                      +.+-=+|.++.+++.+       -+||+   +.|.|. +.-   ||    .+++| ..||+|.||- .+|-.=-++|.|+
T Consensus       428 ~VI~AIGQ~~d~~~~~-------~~gl~---~~~~G~-i~v---d~----~t~~T-s~~gVFAgGD~v~Gp~tvV~AIa~  488 (652)
T PRK12814        428 TVISAIGQQVDPPIAE-------AAGIG---TSRNGT-VKV---DP----ETLQT-SVAGVFAGGDCVTGADIAINAVEQ  488 (652)
T ss_pred             EEEECCCCCCCCCHHH-------CCCCC---CCCCCC-EEE---CC----CCCCC-CCCCEEECCCCCCCCHHHHHHHHH
T ss_conf             8998458788833222-------45863---668998-885---88----88743-999999898887684499999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             7899999874203345654653-210799999988607877402442000122121157871366888
Q gi|254780808|r  382 GLVAGINSARKSNKLDCICFSR-TDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTP  448 (626)
Q Consensus       382 Gl~AGiNa~~~~~~~~p~~l~R-~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~  448 (626)
                      |=.|+.+..++++|+++...+. -.+..+..  |+    +.+.|.-=+ ....|..+.+=.+++|...
T Consensus       489 Gr~AA~~Id~yL~G~~~~~~~~~~~~~~~~~--~~----~p~~~~~~~-~~~~R~~~p~l~~~~R~~~  549 (652)
T PRK12814        489 GKRAAHAIDLFLNGKPVTAPVQPFNSSYGPR--DK----APEAFYDRA-QPAPRVALPELPLEERTGG  549 (652)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH--HC----CCHHHHCCC-CCCCCCCCCCCCHHHHHCC
T ss_conf             9999999999858999777876542221122--03----745553145-6565455776899997069


No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.31  E-value=0.001  Score=45.94  Aligned_cols=101  Identities=14%  Similarity=0.264  Sum_probs=68.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      .|+|||||.=|||+|..+.++|++|.++++.+.-++.     .++                                   
T Consensus       146 ~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r-----~~~-----------------------------------  185 (400)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-----NAP-----------------------------------  185 (400)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----CCC-----------------------------------
T ss_conf             3999885589999999999759948999534634100-----269-----------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             78555346787849999999999997089968980010112025881132220358633445433346643101344
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~  163 (626)
                        |.            .+..+++.++.+ ++++.-+...+-..++. ...+.+.+|..+.|..||+++|.--+-.+.
T Consensus       186 --~~------------~~~~l~~~~~~~-GV~~~~~~~v~~~~~g~-~~~v~l~~G~~l~aD~VivaiGv~Pnt~la  246 (400)
T PRK09754        186 --PP------------VQRYLLQRHQQA-GVRILLNNAIEHVVDGE-KVELTLQSGETLQADVVIYGIGISANDQLA  246 (400)
T ss_pred             --HH------------HHHHHHHHHHHC-CCEEEECCEEEEEECCC-EEEEEECCCCEEECCEEEECCCCCCCHHHH
T ss_conf             --89------------999999999978-98999587589997897-799998689999858999897675375899


No 194
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=97.30  E-value=0.0018  Score=44.13  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=44.5

Q ss_pred             HHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCC--CCC----C-CCC-CCCCCHHHHHHHHHHCCCCC
Q ss_conf             6776540334156621330433466-666677899999874203--345----6-546-53210799999988607877
Q gi|254780808|r  352 FPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSN--KLD----C-ICF-SRTDSYIGVMIDDLTSKGVL  421 (626)
Q Consensus       352 ~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~--~~~----p-~~l-~R~eaYiGVlIDDLitkg~~  421 (626)
                      +..++| .+||+|.+|-+||--... .|..||.+|+-|+...-.  ..+    | .++ .-.-|.+|.--+++..+|.+
T Consensus       287 d~~~~T-s~~~IyA~GDv~g~~~lah~A~~qg~ia~~~i~~~~~~~~~~~~~iP~~vft~Peia~vGlte~ea~~~g~~  364 (453)
T PRK07846        287 DEYQRT-SARGVFALGDVSSPYQLKHVANHEARVVKHNLLHPDDLRASDHRYVPSAVFTHPQIASVGLTENEARAAGLD  364 (453)
T ss_pred             CCCCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCC
T ss_conf             674464-787299987468876762289999999999972589973224676415998178679986999999876997


No 195
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=97.27  E-value=0.0007  Score=47.10  Aligned_cols=58  Identities=31%  Similarity=0.436  Sum_probs=44.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE--CCHHHCCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf             578898894268999999985899899998--07626012466-70022112248999998630
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT--HKTSTIGSMSC-NPAIGGLGKGHLVREIDALD   66 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~--~~~~~~ael~C-nps~gg~akg~L~~Ei~aLg   66 (626)
                      +-|-|||+|-||--+|.-+||+|++|..||  |+|-.+  |.= =|-+. +-|..+.+||..|-
T Consensus       143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV--~~YGIPefR-LpKei~~~E~k~Lk  203 (462)
T TIGR01316       143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV--LAYGIPEFR-LPKEIVETEVKKLK  203 (462)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE--EEECCCCCC-CCHHHHHHHHHHHH
T ss_conf             77999846821468899997479869999714899856--753688854-87578898888763


No 196
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.26  E-value=0.0021  Score=43.65  Aligned_cols=69  Identities=13%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCHHHHHHHHHHCCCC
Q ss_conf             56776540334156621330433466-666677899999874203345654653------21079999998860787
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSNKLDCICFSR------TDSYIGVMIDDLTSKGV  420 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~~~~p~~l~R------~eaYiGVlIDDLitkg~  420 (626)
                      .+..||| .+||+|.+|-++|---.. .|..||.+|+-|+.-.-...+.-.+|+      .-|++|.--+++..+|.
T Consensus       289 Vd~~~~T-s~p~IyA~GDv~g~~~l~h~A~~~g~~aa~~~~g~~~~~~~~~vP~~ift~Peia~vGlte~~a~~~~~  364 (458)
T PRK06912        289 VNEHMQT-NVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG  364 (458)
T ss_pred             CCCCCCC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCC
T ss_conf             4666676-876499962378987773289999999999757998631246673599826665998588999987599


No 197
>PRK07190 hypothetical protein; Provisional
Probab=97.26  E-value=0.00055  Score=47.84  Aligned_cols=41  Identities=22%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             98763578898894268999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |..+..||+|||||-.|.-+|..||+.|++|.++|-++...
T Consensus         1 m~~~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~   41 (480)
T PRK07190          1 MSAQVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPL   41 (480)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99886448999938899999999988799999996999999


No 198
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101   Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.26  E-value=0.00031  Score=49.62  Aligned_cols=33  Identities=36%  Similarity=0.501  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             578898894268999999985899899998076
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      ||+||||-|--|-=+|-|||-.|+||+.+|...
T Consensus         1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~   33 (506)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYL   33 (506)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             947898168317899999985462255322011


No 199
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.21  E-value=0.0011  Score=45.74  Aligned_cols=56  Identities=25%  Similarity=0.361  Sum_probs=39.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             88988942689999999858998999980762601246-6700221122489999986
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA   64 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~a   64 (626)
                      |-|||+|-||--||++|||+|+.|+.||..+.-=|.|. .=|.+.- -|..+.+|++.
T Consensus       540 VAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRL-PkevI~reI~~  596 (1012)
T TIGR03315       540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRI-SAESIQKDIEL  596 (1012)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCC-CHHHHHHHHHH
T ss_conf             9998977899999999997799569981589788547855887778-99999999999


No 200
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.21  E-value=0.0022  Score=43.55  Aligned_cols=70  Identities=16%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCC--CCC----CCC-C-CCCCCHHHHHHHHHHCCCCC
Q ss_conf             56776540334156621330433466-666677899999874203--345----654-6-53210799999988607877
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSN--KLD----CIC-F-SRTDSYIGVMIDDLTSKGVL  421 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~--~~~----p~~-l-~R~eaYiGVlIDDLitkg~~  421 (626)
                      .+..++| .+|++|.+|-++|.--.. -|.+||.+|+-|+...-.  ..+    |.+ + .-.-|.+|.--+++..+|.+
T Consensus       287 vd~~~~T-s~~~IyA~GDv~g~~~Lah~A~~eg~~a~~ni~~~~~~~~~~~~~iP~~vft~PeiA~vGlte~ea~~~g~~  365 (452)
T TIGR03452       287 VDEYGRT-SARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHD  365 (452)
T ss_pred             CCCCCCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCCC
T ss_conf             2876786-897399974068875770089999999999970789974125776514998257679985899999975997


No 201
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.18  E-value=0.0012  Score=45.38  Aligned_cols=56  Identities=25%  Similarity=0.370  Sum_probs=39.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             88988942689999999858998999980762601246-6700221122489999986
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA   64 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~a   64 (626)
                      |-|||+|-||--||++|||+|+.|+.||..+.-=|.|. .=|.+. +-|-.+.+|++.
T Consensus       553 VAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fR-LPk~vIdreI~~  609 (1032)
T PRK09853        553 VAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFR-IPAELIQHDIDF  609 (1032)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC-CCHHHHHHHHHH
T ss_conf             999896889999999999779936998158978842673588767-899999999999


No 202
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.16  E-value=0.0013  Score=45.24  Aligned_cols=57  Identities=26%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             788988942689999999858998999980762601246-6700221122489999986
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDA   64 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~a   64 (626)
                      -|-|||+|-||-=||++||++|++|..||..+.-=|.|. .=|.+. +-|..+.+|++.
T Consensus       312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fR-LPK~vv~rei~~  369 (639)
T PRK12809        312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFK-LDKTVLSQRREI  369 (639)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC-CCHHHHHHHHHH
T ss_conf             8999897589999999999759906999368888986853587452-777899999999


No 203
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.12  E-value=0.0013  Score=45.10  Aligned_cols=74  Identities=23%  Similarity=0.358  Sum_probs=51.8

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE-EECCCHHHHHHHHH
Q ss_conf             45434776668988999999875434001001100012110235456567765403341566213-30433466666677
Q gi|254780808|r  304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ-INGTTGYEEAAAQG  382 (626)
Q Consensus       304 ~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ-I~GteGYeEAAAqG  382 (626)
                      .+-=+|++...      .++.++|||+   +-|.|+ +.-   |+     .+ ....|++|.+|- ++|-.=-++|.++|
T Consensus       686 VI~AIGq~~~~------~~~~~~~gl~---~~~~G~-i~v---d~-----~~-~Ts~~gVFAgGD~v~G~~tVV~Ai~~G  746 (760)
T PRK12778        686 AIVSVGVSPNP------IVPSSIPGLE---LGRKGT-IAV---DD-----NM-QSSIPGIYAGGDIVRGGATVILAMGDG  746 (760)
T ss_pred             EEECCCCCCCC------CCCCCCCCEE---ECCCCC-EEE---CC-----CC-CCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf             99998689886------5211366725---779997-883---98-----96-348989998678676805999999999


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             89999987420334
Q gi|254780808|r  383 LVAGINSARKSNKL  396 (626)
Q Consensus       383 l~AGiNa~~~~~~~  396 (626)
                      --|+.+...+++++
T Consensus       747 r~AA~~Id~yL~~k  760 (760)
T PRK12778        747 RRAAAAMNEQLSSK  760 (760)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999997459


No 204
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.12  E-value=0.0013  Score=45.18  Aligned_cols=57  Identities=28%  Similarity=0.424  Sum_probs=41.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-CCCCCCCCHHHHHHHHHHH
Q ss_conf             889889426899999998589989999807626012466-7002211224899999863
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-NPAIGGLGKGHLVREIDAL   65 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-nps~gg~akg~L~~Ei~aL   65 (626)
                      |-|||+|-||--||++||++|+.|.+||..+.-=|.|.= =|.+. +-|..+.+|++.|
T Consensus       330 VAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fR-Lpk~vv~~ei~~l  387 (654)
T PRK12769        330 VAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFK-LDKSLLARRREIF  387 (654)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCC-CCHHHHHHHHHHH
T ss_conf             999897789999999999769757995257778866752486222-7789999999999


No 205
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.07  E-value=0.0033  Score=42.29  Aligned_cols=70  Identities=27%  Similarity=0.480  Sum_probs=46.2

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCH-HHHHHHHHHHHHHHHHHHCCC-CC----C-CCCC-CCCCHHHHHHHHHHCCCCC
Q ss_conf             567765403341566213304334-666666778999998742033-45----6-5465-3210799999988607877
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTG-YEEAAAQGLVAGINSARKSNK-LD----C-ICFS-RTDSYIGVMIDDLTSKGVL  421 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteG-YeEAAAqGl~AGiNa~~~~~~-~~----p-~~l~-R~eaYiGVlIDDLitkg~~  421 (626)
                      .|..+|| .+||+|-||-+||--- ---|..||.+|+-|+.-.-.. .+    | .++. =.-|++|.--+++..+|.+
T Consensus       290 VD~~~~T-s~p~IyA~GDv~g~~~la~~A~~qg~~a~~~i~~~~~~~~~~~~iP~~vft~Peia~VGlte~ea~~~g~~  367 (460)
T PRK06292        290 VDPHTQT-NVPGIYAAGDVNGGPPLLHEAADEGIIAAENAAYPQVGPVDYRVIPSVVFTDPQIASVGKTEEELKAAGID  367 (460)
T ss_pred             CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCC
T ss_conf             4887302-88735874035788776789999999999997279984420035523786365279876889999876997


No 206
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280   This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=97.05  E-value=0.00057  Score=47.75  Aligned_cols=139  Identities=24%  Similarity=0.308  Sum_probs=76.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCC-----CCCC------------------CCC--C-------
Q ss_conf             8898894268999999985899899998076-26012466-----7002------------------211--2-------
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSC-----NPAI------------------GGL--G-------   54 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~C-----nps~------------------gg~--a-------   54 (626)
                      |||||+||||.-||..+|..|+.|.+|+..+ -+=|.=+|     |-|.                  ||.  +       
T Consensus         1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~d~prRaHSiaAQGGiN~A~n~k~dgD~~~~~f~DTvkGGDfr~res~v~r   80 (620)
T TIGR01811         1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPRRAHSIAAQGGINAAKNTKNDGDSVWRHFDDTVKGGDFRSRESNVKR   80 (620)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHCCCCCCCCCCCCCCCCCCCEEEECCCEECCCCCCCCCHHHH
T ss_conf             96855653478999999864885125440588762000000266200256567888416653140323533677752789


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-------------HHHHHHHCCCCC
Q ss_conf             ----248999998630399999988631488730787855534678784999999-------------999999708996
Q gi|254780808|r   55 ----KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-------------AMQREILSQENL  117 (626)
Q Consensus        55 ----kg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~-------------~vt~~l~~~pni  117 (626)
                          .-.++.-|+|+|-...|-..- .+-    +||=|  |    +||-|-.|++             .|+..+..= .|
T Consensus        81 la~~s~~iId~~~a~GvpFaRe~gG-lLd----~RsFG--G----~qvsRT~Yarg~TGQQLl~~~~~a~~r~~~~G-~v  148 (620)
T TIGR01811        81 LAEISPEIIDLMDAMGVPFAREYGG-LLD----TRSFG--G----VQVSRTFYARGQTGQQLLLAADSALRRQIAAG-TV  148 (620)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCC-CCC----CCCCC--C----EEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC-CE
T ss_conf             9873089999986458843455466-300----13468--6----00012134177627899999999998888627-35


Q ss_pred             EEE-HHHHCCCCCCCC----CEEE-----EEECCCCCCCCCCCCCCCCCCC
Q ss_conf             898-001011202588----1132-----2203586334454333466431
Q gi|254780808|r  118 DVI-QGEVAGFNTEKN----IISS-----IVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus       118 ~i~-~~eV~~l~~~~~----~~~~-----v~~~~g~~~~~~~viiatGtfl  158 (626)
                      ++. +.|+.+++..+.    +..|     ..|..-..+.+.+||+|||-.-
T Consensus       149 ~~y~~~e~ld~iv~d~~gek~arGi~arnL~Tge~~~~~adAVilAtGGyg  199 (620)
T TIGR01811       149 EKYERWEMLDIIVVDGDGEKRARGIIARNLVTGEIETFSADAVILATGGYG  199 (620)
T ss_pred             EEEECCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCEEEEECCCCH
T ss_conf             664165168898875887502200121024000000003566898128860


No 207
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.04  E-value=0.0034  Score=42.19  Aligned_cols=104  Identities=22%  Similarity=0.382  Sum_probs=66.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK   87 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk   87 (626)
                      =.||||||=|-|||-+|-++|+.|-.++|-|--                 +.+-||+.||...+                
T Consensus       150 GaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L-----------------M~~QLD~~aG~lL~----------------  196 (813)
T TIGR02374       150 GAVIGGGLLGLEAARALKNLGMDVSVIELAPFL-----------------MAKQLDQTAGRLLQ----------------  196 (813)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH-----------------HHHHHHHHHHHHHH----------------
T ss_conf             558867415889999998779706446764898-----------------99999999999999----------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             855534678784999999999999-708996898001011202588113222035863344543334664310134
Q gi|254780808|r   88 GPAVRGPRTQADRELYRLAMQREI-LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVI  162 (626)
Q Consensus        88 GpAv~alraqvDR~~fs~~vt~~l-~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~  162 (626)
                                  |++=+.-||=.+ ....-++++++.      +.....++...||+.+.+.-||.|+|--=+..+
T Consensus       197 ------------~~le~~G~~~l~Gt~k~t~eiv~~~------d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~~L  254 (813)
T TIGR02374       197 ------------RELEKKGLTVLLGTEKDTVEIVGED------DVEKVERLRFKDGSSLEADLVVFAAGIRPRDEL  254 (813)
T ss_pred             ------------HHHHHCCCEEEECCCCCEEEEEECC------CHHHHCEEECCCCCEEEECEEEEECCCCCCHHH
T ss_conf             ------------9998579579861761105764156------401231224238978870379995156663689


No 208
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.03  E-value=0.0009  Score=46.32  Aligned_cols=187  Identities=21%  Similarity=0.320  Sum_probs=94.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-CC----------CCCCCCCCCC--CCHHHHHHHHHHHHHH-
Q ss_conf             76357889889426899999998589989999807626-01----------2466700221--1224899999863039-
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-IG----------SMSCNPAIGG--LGKGHLVREIDALDGL-   68 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-~a----------el~Cnps~gg--~akg~L~~Ei~aLgg~-   68 (626)
                      ...+|||||||||||.-||.-+|.+|.+|+++.+..+. +|          -||-||--.-  +--+|-..--|=+|+. 
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~   82 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA   82 (552)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCEEEECCHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf             66442799875279889999887267659997055545656513431263788468788221552047788775430124


Q ss_pred             -------HHHHHHHHHHHHH------HHC-------------------------C--------CCCCCCCCHHHHHHHHH
Q ss_conf             -------9999988631488------730-------------------------7--------87855534678784999
Q gi|254780808|r   69 -------MGRVADAAGIQFR------VLN-------------------------V--------KKGPAVRGPRTQADREL  102 (626)
Q Consensus        69 -------m~~~aD~~~i~~r------~ln-------------------------~--------skGpAv~alraqvDR~~  102 (626)
                             -.+-=.++.++|-      +|-                         +        ..||+|-+        -
T Consensus        83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~--------p  154 (552)
T COG3573          83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLE--------P  154 (552)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEECCCCCHHH--------H
T ss_conf             68840005378999987664153157899728714310120420776667888877635876168864365--------9


Q ss_pred             HHHHHHHHHHCCCCCEE-EHHHHCCCCCCCCCEEEEE------------------ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99999999970899689-8001011202588113222------------------0358633445433346643101344
Q gi|254780808|r  103 YRLAMQREILSQENLDV-IQGEVAGFNTEKNIISSIV------------------MQDNSMIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus       103 fs~~vt~~l~~~pni~i-~~~eV~~l~~~~~~~~~v~------------------~~~g~~~~~~~viiatGtfl~g~~~  163 (626)
                      |-+.+++.-.. +.|+. .+-.|..|...++.+.||.                  ..-..++.+.+||+|+|-. .|.--
T Consensus       155 Fvr~~re~~~~-~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGI-GGnhe  232 (552)
T COG3573         155 FVRRLREAQRR-GRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGI-GGNHE  232 (552)
T ss_pred             HHHHHHHHHHC-CCEEEEEEEECCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEECCCC-CCCHH
T ss_conf             99999998757-83389854011526853876761003321788445689764301032577620599945876-88888


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH
Q ss_conf             432023322247511133100001011200544445441011000013443
Q gi|254780808|r  164 IGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKT  214 (626)
Q Consensus       164 ~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~  214 (626)
                      .-...++--|++-++               .++-+|.|.-+|++-|.-..+
T Consensus       233 lVRrnWP~eRlG~~P---------------e~m~~GVPaHVDGrmi~i~~~  268 (552)
T COG3573         233 LVRRNWPTERLGRAP---------------EQMLSGVPAHVDGRMIGIAVA  268 (552)
T ss_pred             HHHHCCCHHHCCCCH---------------HHHHCCCCCCCCCHHHHHHHH
T ss_conf             887529565508975---------------887628860136226778887


No 209
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02  E-value=0.0053  Score=40.85  Aligned_cols=135  Identities=17%  Similarity=0.196  Sum_probs=83.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf             578898894268999999985899---8999980762601246670022112248999998630399999988631----
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGA---STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI----   78 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~---~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i----   78 (626)
                      ++|.|||||-+|...|+.|.+.=-   .+.++|.+++-=.-+.-++.-    .-|         .+++.+.+.+.-    
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~----p~~---------~lNv~a~~mS~~~pD~   68 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE----PEH---------LLNVPAARMSAFAPDI   68 (474)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC----CHH---------HHCCCCCCCCCCCCCC
T ss_conf             518997886579999999984788777567853555457875578888----214---------4216202354458998


Q ss_pred             ---HHHHHCCC----C-----CCCCCCHHHHHHHHHHHHHHHHHHHCC----C--CCEEEHHHHCCCCCC-CCCEEEEEE
Q ss_conf             ---48873078----7-----855534678784999999999999708----9--968980010112025-881132220
Q gi|254780808|r   79 ---QFRVLNVK----K-----GPAVRGPRTQADRELYRLAMQREILSQ----E--NLDVIQGEVAGFNTE-KNIISSIVM  139 (626)
Q Consensus        79 ---~~r~ln~s----k-----GpAv~alraqvDR~~fs~~vt~~l~~~----p--ni~i~~~eV~~l~~~-~~~~~~v~~  139 (626)
                         -.|+|+..    .     +.=+++.   .-|.+|..++.+.+..-    +  ++..++++++++..+ +.....+.+
T Consensus        69 p~~F~~WL~~~~~~~~d~~~~~~d~~~y---~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~  145 (474)
T COG4529          69 PQDFVRWLQKQLQRYRDPEDINHDGQAY---PPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTT  145 (474)
T ss_pred             CHHHHHHHHHCCCCCCCHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEEC
T ss_conf             1689999974255657754437765346---6156999999999999997367640467764443010045773578965


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             35863344543334664
Q gi|254780808|r  140 QDNSMIRCSTVVLTTGT  156 (626)
Q Consensus       140 ~~g~~~~~~~viiatGt  156 (626)
                      .+|....+..+|++||-
T Consensus       146 ~~g~~~~ad~~Vlatgh  162 (474)
T COG4529         146 ADGPSEIADIIVLATGH  162 (474)
T ss_pred             CCCCEEEEEEEEEECCC
T ss_conf             88870450179994368


No 210
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=96.96  E-value=0.00097  Score=46.09  Aligned_cols=32  Identities=38%  Similarity=0.672  Sum_probs=30.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             88988942689999999858998999980762
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      |+|||||.-|||.|..++++|++|.|+++.+.
T Consensus         2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~   33 (82)
T pfam00070         2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDR   33 (82)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             99999889999999999863927899812573


No 211
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=96.94  E-value=0.00095  Score=46.17  Aligned_cols=112  Identities=23%  Similarity=0.326  Sum_probs=74.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH----------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             357889889426899999998589--98999980762----------601246670022112248999998630399999
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTS----------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV   72 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~----------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~   72 (626)
                      .-||||+|||-.|-=||+.+||.|  .||.++|-++.          .|-.+|-    --+|+ .+.+|           
T Consensus        21 e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~Vv----~~pA~-~~L~e-----------   84 (283)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIVV----EKPAK-EILDE-----------   84 (283)
T ss_pred             HCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEE----ECHHH-HHHHH-----------
T ss_conf             106679878974668999998429980699985110268986642224561365----14046-88886-----------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCC------CEEEEEECCCC
Q ss_conf             988631488730787855534678784999999999999708996898001-011202588------11322203586
Q gi|254780808|r   73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKN------IISSIVMQDNS  143 (626)
Q Consensus        73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~------~~~~v~~~~g~  143 (626)
                         -+|  |.-...-|--|      .|-..|-..+-.+.-.-||+.|+... |.||...+.      .|.||.+.+..
T Consensus        85 ---~gI--~~~d~~dg~~V------ads~e~~s~l~s~a~~aGn~Ki~~~~~vEDl~~R~~~ekGe~gv~Gvv~nw~L  151 (283)
T TIGR00292        85 ---FGI--RYEDEGDGYVV------ADSAEFISTLASKALQAGNAKIFNGVSVEDLILRDDTEKGEVGVAGVVINWSL  151 (283)
T ss_pred             ---CCC--CEEECCCCEEE------EHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEE
T ss_conf             ---598--13356885487------23676899999998658873143336888778768898651357789870042


No 212
>KOG0042 consensus
Probab=96.91  E-value=0.00037  Score=49.10  Aligned_cols=35  Identities=40%  Similarity=0.641  Sum_probs=32.0

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             76357889889426899999998589989999807
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      ..+|||.|||||-.|+-+|+-++-||.+|.|+|-.
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~   99 (680)
T KOG0042          65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAG   99 (680)
T ss_pred             CCCCCEEEECCCCCCCCEEEHHHCCCCEEEEEECC
T ss_conf             77553799888866754121201145214777426


No 213
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=96.87  E-value=0.0013  Score=45.11  Aligned_cols=152  Identities=24%  Similarity=0.358  Sum_probs=76.6

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-C-CCCCC-CCHHH---HHHHHHHHHH--HHHHHH
Q ss_conf             876357889889426899999998589989999807626012466-7-00221-12248---9999986303--999999
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-N-PAIGG-LGKGH---LVREIDALDG--LMGRVA   73 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-n-ps~gg-~akg~---L~~Ei~aLgg--~m~~~a   73 (626)
                      ||-.-||.|||||=||-=||.++|+-|++|.|+.-++.-=|-|-- + -.|.| +|.-=   =++||.+++-  +|.|.|
T Consensus       173 ~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT  252 (1026)
T TIGR01372       173 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTT  252 (1026)
T ss_pred             EEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             42320478878896799999999647988999706765777556778760178018999999999974189816743540


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             88631488730787855534678784999999999999708996898001011202588113222035863344543334
Q gi|254780808|r   74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLT  153 (626)
Q Consensus        74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viia  153 (626)
                                       +++-                 -.|--+.++|.--..|+....   +++=.--=.+.|+.||||
T Consensus       253 -----------------~~G~-----------------YD~N~~g~~ER~~DHL~~P~~---g~~ReRlWrvRAkrvVLA  295 (1026)
T TIGR01372       253 -----------------AFGY-----------------YDHNTVGALERVTDHLDAPAK---GVPRERLWRVRAKRVVLA  295 (1026)
T ss_pred             -----------------EEEE-----------------ECCCEEEEEEEHHCCCCCCCC---CCCCCEEEEECCCEEEEC
T ss_conf             -----------------5545-----------------147747876201136677887---485330577725345660


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             664310134443202332224751113310000101120054
Q gi|254780808|r  154 TGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGR  195 (626)
Q Consensus       154 tGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r  195 (626)
                      ||-+=+.+.+-+..     +-|-.-+.+...-+.+++..-|+
T Consensus       296 ~GA~ERPlVF~nND-----~PGvMlA~A~~~YlnRygV~pG~  332 (1026)
T TIGR01372       296 TGALERPLVFANND-----RPGVMLAGAARTYLNRYGVAPGK  332 (1026)
T ss_pred             CCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             57644778688319-----53233367999988875005487


No 214
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105   Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=96.86  E-value=0.0012  Score=45.32  Aligned_cols=53  Identities=17%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             HHHHHHHHH--CCCCCEEEHHHHCCCCCCC-------CCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             999999997--0899689800101120258-------8113222035863344543334664
Q gi|254780808|r  104 RLAMQREIL--SQENLDVIQGEVAGFNTEK-------NIISSIVMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus       104 s~~vt~~l~--~~pni~i~~~eV~~l~~~~-------~~~~~v~~~~g~~~~~~~viiatGt  156 (626)
                      .++|.+..+  ..-.-.-...+|.+|....       +++.+|.+..+..+.|.+||.+..-
T Consensus       230 ~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ad~VvSnAD~  291 (526)
T TIGR02734       230 VAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVATGGRATAVHLADGERLDADAVVSNADL  291 (526)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEECCEEEEEECCCCEEEEEEEEEECCCH
T ss_conf             99999999746874699745531144621674233165243455065403311278874875


No 215
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.83  E-value=0.0021  Score=43.73  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             578898894268999999985899899998076
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      .+|+|||||-+|.-+|..||+.|++|.++|.++
T Consensus         3 t~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~   35 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             889999977999999999997799889997689


No 216
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobZ, which is essential for cobalamin biosynthesis  and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=96.82  E-value=0.0013  Score=45.28  Aligned_cols=369  Identities=18%  Similarity=0.167  Sum_probs=175.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH-----------C---------------------CCCCCCCCCCCC
Q ss_conf             57889889426899999998589989999807626-----------0---------------------124667002211
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST-----------I---------------------GSMSCNPAIGGL   53 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~-----------~---------------------ael~Cnps~gg~   53 (626)
                      -||.|||||+||-=||..++|.|+.|+|+|-=|-.           |                     .+|.  +--||.
T Consensus         2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNarHgRN~R~~hd~p~d~~~D~YpaEEf~~dL~--~vtgg~   79 (467)
T TIGR02485         2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNARHGRNLRVAHDIPLDFLRDAYPAEEFRRDLL--KVTGGR   79 (467)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH--HHCCCC
T ss_conf             237887642588999999863796798402478532578653334511101578886457873789998754--312787


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHCC---CCCEEE-HHHHC
Q ss_conf             224899999863039999998863148873078785553467878499999----9999999708---996898-00101
Q gi|254780808|r   54 GKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYR----LAMQREILSQ---ENLDVI-QGEVA  125 (626)
Q Consensus        54 akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs----~~vt~~l~~~---pni~i~-~~eV~  125 (626)
                      --.+|-+=+=.=+|-+....-..+||+.=      ++-+-|-. .=|..|-    ++|++.+.+.   =.|+|. .-+|.
T Consensus        80 t~~~l~~L~i~r~s~~~~w~~~~GVhl~P------~~aG~lpy-sRrtaF~~GGGkAl~NAly~sAerLGv~Iry~~~V~  152 (467)
T TIGR02485        80 TDERLARLLIERASSILRWLIAHGVHLQP------AAAGVLPY-SRRTAFLLGGGKALVNALYASAERLGVEIRYDAEVE  152 (467)
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHCCCEECC------CCCCCCCH-HHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCC
T ss_conf             41157899887200236899967943366------32565760-111112357618999999998855572541477300


Q ss_pred             CCCC--CCCCEEEEEE--CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC-------------CCCCHHH-
Q ss_conf             1202--5881132220--35863344543334664310134443202332224751113-------------3100001-
Q gi|254780808|r  126 GFNT--EKNIISSIVM--QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN-------------SLFNSFM-  187 (626)
Q Consensus       126 ~l~~--~~~~~~~v~~--~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~-------------~ls~~l~-  187 (626)
                      .|+.  ++....++.+  ..+..|.++++|||+|-|=+..-|.-...=+..+ +|-+++             -|..-+. 
T Consensus       153 ri~~~~~g~~~i~~~~v~~~~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~-geWPadn~~~RGTpy~~G~LL~~ll~d  231 (467)
T TIGR02485       153 RIEREEDGRAFIAARLVAAADERIATKAVVLAAGGLGANREWLRKAFGSRAE-GEWPADNFLVRGTPYAKGRLLKLLLDD  231 (467)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCC-CCCCHHCEEECCCCHHCCHHHHHHHHH
T ss_conf             0264567862012146622688122468888617888897999983688757-788511001258802102689999854


Q ss_pred             HHHHHCCC---------------CCCCCCCHHHHCHH----HHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01120054---------------44454410110000----134--4321147876687774356578000000001232
Q gi|254780808|r  188 KFDFDTGR---------------LKTGTPARLDGKTI----IWD--KTEKQFADERLIPFSFMTDKITNRQIECGITRTN  246 (626)
Q Consensus       188 ~~~~~~~r---------------~ktgtppri~~~si----df~--~~e~q~~d~~~~~~s~~~~~~~~~q~~~~~~~t~  246 (626)
                      .=+-..|.               |+-|++-||+.=+.    |-+  .+...-.+..|.-+|.|-...  -+.|--..|..
T Consensus       232 ~Ga~aiGdPt~~HvVavDaRaP~~DgGIvtRid~~~lG~VV~r~G~Rf~deGa~~~P~rya~Wgr~~--a~~Pgq~ay~l  309 (467)
T TIGR02485       232 EGADAIGDPTDAHVVAVDARAPLYDGGIVTRIDSVSLGVVVDRDGERFADEGADSQPKRYAVWGRRV--ADRPGQLAYLL  309 (467)
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECEEECCEEECCCCCCHHHCCCCCCCCEEECHHHHH--HCCCCCEEEEE
T ss_conf             1643037798730676568888457835744121211317889776124136677884130013676--35898515324


Q ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCEEEECCCCCCE-EEECCCCCCCCHHHH--
Q ss_conf             001477764024575414432356422255321----2335676433452013015787764-543477666898899--
Q gi|254780808|r  247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIE----DKIVRFGERNGHQIFLEPEGLNTDV-VYPNGISTALPEEIQ--  319 (626)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie----~k~~~~~~~p~h~VqLrpE~~~~~~-~n~vGFqTsL~~~~Q--  319 (626)
                      -.+..+.+....-.|....+..+----.|---+    ..+.+|++-|+ +=|...-.++... --+|--.++--....  
T Consensus       310 ld~~a~~r~~P~a~pp~~Adtl~eLA~~lgidp~~l~~tld~~naapr-vGqfdhttlddChteGvvPak~~~ar~i~v~  388 (467)
T TIGR02485       310 LDAKALKRLAPSALPPVKADTLEELAAKLGIDPDALAETLDAYNAAPR-VGQFDHTTLDDCHTEGVVPAKATAARTIAVV  388 (467)
T ss_pred             ECCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             320578635874569788888799999858888899986506787876-6655553100001356644423456565337


Q ss_pred             -HHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEEC----------CCHHHHHHHHHHHHHHH
Q ss_conf             -9999875434001001100012110235456567765403341566213304----------33466666677899999
Q gi|254780808|r  320 -HQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQING----------TTGYEEAAAQGLVAGIN  388 (626)
Q Consensus       320 -~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~G----------teGYeEAAAqGl~AGiN  388 (626)
                       .=-+-|+||+   -|++||  ++-|-+---.++.   -+..++||.||.+=-          =-|-.=||.=|-+||-.
T Consensus       389 Pf~aypm~PG~---tFt~yG--l~vDatarVr~nd---~~~~~~LFaAG~~MagnvLg~GYlaG~G~T~~AVFG~IAG~~  460 (467)
T TIGR02485       389 PFYAYPMKPGV---TFTRYG--LKVDATARVRLND---ARASDDLFAAGEIMAGNVLGKGYLAGAGLTLAAVFGRIAGRE  460 (467)
T ss_pred             CCCCCCCCCCC---CEEECC--EEECHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             73220356785---146505--0211224445425---889724788988999987310232211567778863567889


Q ss_pred             HHHHCCC
Q ss_conf             8742033
Q gi|254780808|r  389 SARKSNK  395 (626)
Q Consensus       389 a~~~~~~  395 (626)
                      |||.+.+
T Consensus       461 AAR~~~~  467 (467)
T TIGR02485       461 AARLVRK  467 (467)
T ss_pred             HHHCCCC
T ss_conf             8520589


No 217
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.81  E-value=0.0031  Score=42.53  Aligned_cols=44  Identities=32%  Similarity=0.500  Sum_probs=35.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCC
Q ss_conf             889889426899999998589--989999807626012466700221
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGG   52 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg   52 (626)
                      |+|||||.||-=|||.|++.|  +.+.|+|.. +++|=+.-+=..+|
T Consensus         3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~-~r~GG~l~T~~~~G   48 (444)
T COG1232           3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD-DRVGGLLRTVKIDG   48 (444)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCEEEEEEECC
T ss_conf             99987828889999999985899867998348-87786589983188


No 218
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.80  E-value=0.0019  Score=44.03  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             63578898894268999999985899899998076
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +.-||||||||+||+=||+-+-|.|..|.++|-+.
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~   40 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD   40 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             88868998972688899998764681899986467


No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.78  E-value=0.015  Score=37.64  Aligned_cols=30  Identities=33%  Similarity=0.640  Sum_probs=14.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             889889426899999998589989999807
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      ++|||||--|+|=|...+++|++|.++++.
T Consensus       176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~  205 (454)
T COG1249         176 LVIVGGGYIGLEFASVFAALGSKVTVVERG  205 (454)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             999898889999999999869978999468


No 220
>KOG4716 consensus
Probab=96.75  E-value=0.023  Score=36.35  Aligned_cols=326  Identities=17%  Similarity=0.222  Sum_probs=150.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CHHHCC--C---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7635788988942689999999858998999980-762601--2---466700221122489999986303999999886
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH-KTSTIG--S---MSCNPAIGGLGKGHLVREIDALDGLMGRVADAA   76 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~-~~~~~a--e---l~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~   76 (626)
                      ..+||.||||||-+|--||--+|+.|.+|.++.. +|.-.|  +   =-|-| +|-+-| -|++.-.-|| .-..-+++ 
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvN-VGCIPK-KLMHQAallG-~al~da~k-   92 (503)
T KOG4716          17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVN-VGCIPK-KLMHQAALLG-EALHDARK-   92 (503)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEE-CCCCCH-HHHHHHHHHH-HHHHHHHH-
T ss_conf             4774479986885136677998860870799961245788874555854665-365318-9888888777-88777886-


Q ss_pred             HHHHHHHCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHCCC---CCEEEHHHHCCCC-----CCCCCEEEEE-ECCCCC
Q ss_conf             314887307878555346787---849999999999997089---9689800101120-----2588113222-035863
Q gi|254780808|r   77 GIQFRVLNVKKGPAVRGPRTQ---ADRELYRLAMQREILSQE---NLDVIQGEVAGFN-----TEKNIISSIV-MQDNSM  144 (626)
Q Consensus        77 ~i~~r~ln~skGpAv~alraq---vDR~~fs~~vt~~l~~~p---ni~i~~~eV~~l~-----~~~~~~~~v~-~~~g~~  144 (626)
                                   =||-.--|   -|-+...+.|++.|.+--   .+.+.+..|+=+.     .+...+.... ...-..
T Consensus        93 -------------yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~  159 (503)
T KOG4716          93 -------------YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERF  159 (503)
T ss_pred             -------------HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCCEEE
T ss_conf             -------------2877762335546899999998776623525898731010135602145426625898547784578


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf             34454333466431013444320233222475111331000010112005444454410110000134432114787668
Q gi|254780808|r  145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLI  224 (626)
Q Consensus       145 ~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~  224 (626)
                      +.|..++++||---+          ..+.-|....--.|+.+..+.+.-|+     .-.+-+.++..+.+-...+     
T Consensus       160 ~ta~~fvIatG~RPr----------Yp~IpG~~Ey~ITSDDlFsl~~~PGk-----TLvVGa~YVaLECAgFL~g-----  219 (503)
T KOG4716         160 LTAENFVIATGLRPR----------YPDIPGAKEYGITSDDLFSLPYEPGK-----TLVVGAGYVALECAGFLKG-----  219 (503)
T ss_pred             EECCEEEEEECCCCC----------CCCCCCCEEEEECCCCCCCCCCCCCC-----EEEECCCEEEEEHHHHHHH-----
T ss_conf             614538997268778----------99999842521123321055689994-----4897451345421356753-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf             777435657800000000123200147776402457--54144323564222553-212335676433452013015787
Q gi|254780808|r  225 PFSFMTDKITNRQIECGITRTNLETHRIIMENIKHS--AIYSGDIKSYGPRYCPS-IEDKIVRFGERNGHQIFLEPEGLN  301 (626)
Q Consensus       225 ~~s~~~~~~~~~q~~~~~~~t~~~~~~~~~~~~~~~--~~~~g~~~~~gprycPs-ie~k~~~~~~~p~h~VqLrpE~~~  301 (626)
                       |.|.-.-               ....|....+++.  -....-+...|-.+-.. +|..+.+-.++..           
T Consensus       220 -fg~~vtV---------------mVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-----------  272 (503)
T KOG4716         220 -FGYDVTV---------------MVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-----------  272 (503)
T ss_pred             -CCCCCEE---------------EEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCE-----------
T ss_conf             -3888579---------------9987410252699999999999970973340335301022047727-----------


Q ss_pred             CCEEEECCCCCCCCHHHHHHHHHHH--------HHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCC
Q ss_conf             7645434776668988999999875--------43400100110001211023545656776540334156621330433
Q gi|254780808|r  302 TDVVYPNGISTALPEEIQHQFIRTI--------PGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTT  373 (626)
Q Consensus       302 ~~~~n~vGFqTsL~~~~Q~rv~r~I--------PGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gte  373 (626)
                       ...|.+-+.+.--.++-.-|+-.|        -||+||       .|+.|--+-+.+-...|.-.+|++|.-|-|  .+
T Consensus       273 -~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~-------GVk~n~ks~KI~v~~~e~t~vp~vyAvGDI--l~  342 (503)
T KOG4716         273 -RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNA-------GVKTNEKSGKIPVDDEEATNVPYVYAVGDI--LE  342 (503)
T ss_pred             -EEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCC-------CEEECCCCCCCCCCHHHHCCCCCEEEECCE--EC
T ss_conf             -99961255664441022320312245110100388753-------325324478644576773578716885000--06


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             46666667789999987420334565465
Q gi|254780808|r  374 GYEEAAAQGLVAGINSARKSNKLDCICFS  402 (626)
Q Consensus       374 GYeEAAAqGl~AGiNa~~~~~~~~p~~l~  402 (626)
                      |-.|-----+.||--.|+++-+-.....+
T Consensus       343 ~kpELTPvAIqsGrlLa~Rlf~gs~q~~d  371 (503)
T KOG4716         343 DKPELTPVAIQSGRLLARRLFAGSTQLMD  371 (503)
T ss_pred             CCCCCCHHHHHHCHHHHHHHHCCCCEEEE
T ss_conf             98656525435356999987468615641


No 221
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.75  E-value=0.0021  Score=43.78  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=29.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+|+|||+||--||+.||..|+.|.|+|-++
T Consensus         3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           3 VAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             8997462788899999986898539984267


No 222
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774    This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=96.74  E-value=0.0014  Score=45.06  Aligned_cols=34  Identities=44%  Similarity=0.600  Sum_probs=32.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |-|||||-||+-||=+||+.|+.+.|+|-++|+.
T Consensus         3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~a   36 (401)
T TIGR02028         3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNA   36 (401)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             8897489741689999985031046332056788


No 223
>KOG1399 consensus
Probab=96.65  E-value=0.0097  Score=38.99  Aligned_cols=137  Identities=18%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             987635788988942689999999858998999980762601246670022-------1122489999986303999999
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIG-------GLGKGHLVREIDALDGLMGRVA   73 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~g-------g~akg~L~~Ei~aLgg~m~~~a   73 (626)
                      ||.+.  |.|||||-||-=||-.|-+.|+.+..+|-..+==|-=...+...       -.-+-++-+|+-.+       .
T Consensus         4 ~~~~~--vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~-------~   74 (448)
T KOG1399           4 MMSKD--VAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGY-------S   74 (448)
T ss_pred             CCCCC--EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCC-------C
T ss_conf             77785--48978566888999999877998369970587454586057656554324342104688444257-------9


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC--CEEEEEECCC----CCCCC
Q ss_conf             88631488730787855534678784999999999999708996898001011202588--1132220358----63344
Q gi|254780808|r   74 DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKN--IISSIVMQDN----SMIRC  147 (626)
Q Consensus        74 D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~--~~~~v~~~~g----~~~~~  147 (626)
                      |--           -|.=-..+. -++..+-++.....+......-++-++..+-.+..  .-..|.+.+.    .....
T Consensus        75 dfp-----------f~~~~~~~~-p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~if  142 (448)
T KOG1399          75 DFP-----------FPERDPRYF-PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIF  142 (448)
T ss_pred             CCC-----------CCCCCCCCC-CCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf             989-----------754571117-88889999999998735834626734657998405677416898148864058996


Q ss_pred             CCCCCCCCCCC
Q ss_conf             54333466431
Q gi|254780808|r  148 STVVLTTGTFL  158 (626)
Q Consensus       148 ~~viiatGtfl  158 (626)
                      ..|++|||.+.
T Consensus       143 d~VvVctGh~~  153 (448)
T KOG1399         143 DAVVVCTGHYV  153 (448)
T ss_pred             EEEEECCCCCC
T ss_conf             38999556768


No 224
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.63  E-value=0.003  Score=42.62  Aligned_cols=34  Identities=29%  Similarity=0.629  Sum_probs=32.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             3578898894268999999985899899998076
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      .||.+|||+|++|+=-|-.+|+.|.+|+++|.|+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~   34 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN   34 (374)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9758998776268899999997598799996256


No 225
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.61  E-value=0.0088  Score=39.29  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      -+|||||+=|.|||..|-+.|..|..+.|-+
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~  178 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP  178 (793)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             5897551141678878874797348987336


No 226
>PTZ00318 NADH dehydrogenase; Provisional
Probab=96.54  E-value=0.0087  Score=39.32  Aligned_cols=115  Identities=16%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894268999999985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      |+.++  |+|||||-||..+|..+.+..+.|.|+..+.-.+    .-|=         .-|+ |-|++=.+.        
T Consensus         8 ~~Kpr--VVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~l----F~PL---------L~qv-AtGtLe~r~--------   63 (514)
T PTZ00318          8 LLKPN--VVVVGTGWAGCYFARHLNPKLANLHVLSTRNHMV----FTPL---------LPQT-TTGTLEFRS--------   63 (514)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCC----CCHH---------HHHH-HHCCCCHHH--------
T ss_conf             78885--8999976999999997386898289999999850----1021---------6766-205777577--------


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEE----------CCCCCCCCCCC
Q ss_conf             87307878555346787849999999999997089968980010112025881132220----------35863344543
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVM----------QDNSMIRCSTV  150 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~----------~~g~~~~~~~v  150 (626)
                               .+..+          +.+...+...++ .+++++|++++.+...+.-+..          .....+.=...
T Consensus        64 ---------I~~Pi----------r~i~~~~~~~~~-~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~L  123 (514)
T PTZ00318         64 ---------VCEPI----------TRIQPALAKLPN-RFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKL  123 (514)
T ss_pred             ---------EECCH----------HHHHHHHCCCCC-EEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEE
T ss_conf             ---------22217----------887676513674-5999999887121078999740124665444456636428878


Q ss_pred             CCCCCCCCH
Q ss_conf             334664310
Q gi|254780808|r  151 VLTTGTFLR  159 (626)
Q Consensus       151 iiatGtfl~  159 (626)
                      |+|+|.-.+
T Consensus       124 VlA~Gs~tn  132 (514)
T PTZ00318        124 ILAHGARPN  132 (514)
T ss_pred             EECCCCCCC
T ss_conf             986786556


No 227
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=96.53  E-value=0.0032  Score=42.44  Aligned_cols=135  Identities=25%  Similarity=0.440  Sum_probs=76.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------
Q ss_conf             63578898894268999999985899899998076--26012466700221122489999986303999999--------
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT--STIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVA--------   73 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~--~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~a--------   73 (626)
                      +.||.+|||||=-|.=.|-.+|..|++++|+|-+.  -++==-=|=|=     |  +++-=-.+--.|-+-+        
T Consensus         1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LGGTCVNVGCVPK-----K--vMW~aa~~~e~~~~~~~~YGf~~~   73 (475)
T TIGR01421         1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLGGTCVNVGCVPK-----K--VMWYAASLAETMHRDAADYGFKSE   73 (475)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCCCEEEEECEECC-----H--HHCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             975469983686157888988850760787620004880685011376-----2--320056777887522102785433


Q ss_pred             ---HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCEEEHHHHCCCCCCCCCEEEEEECC--CCCC
Q ss_conf             ---88631488730787855534678784999999999999708---996898001011202588113222035--8633
Q gi|254780808|r   74 ---DAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ---ENLDVIQGEVAGFNTEKNIISSIVMQD--NSMI  145 (626)
Q Consensus        74 ---D~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~---pni~i~~~eV~~l~~~~~~~~~v~~~~--g~~~  145 (626)
                         |.-.+.|-+         .-++  -.|++|=......=.+.   .+|+++++-.+ ...+....+.|.-..  ...+
T Consensus        74 lPld~~~l~F~f---------~~l~--~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~-F~~~~kPtveV~g~~nttevy  141 (475)
T TIGR01421        74 LPLDKENLKFNF---------KELK--EKRDAYVDRLNGIYQKNLEKNKVDVIEGHAE-FTKDQKPTVEVNGKENTTEVY  141 (475)
T ss_pred             CCCCCCCCEECH---------HHHH--HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-ECCCCCCCEEECCCCCCEEEE
T ss_conf             641003660077---------9998--7667899998887524865055438986788-748889634773642430257


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             445433346643
Q gi|254780808|r  146 RCSTVVLTTGTF  157 (626)
Q Consensus       146 ~~~~viiatGtf  157 (626)
                      .|..++||||--
T Consensus       142 ~A~HIliATGG~  153 (475)
T TIGR01421       142 TAPHILIATGGK  153 (475)
T ss_pred             ECCEEEEECCCC
T ss_conf             627058944872


No 228
>KOG2852 consensus
Probab=96.46  E-value=0.0059  Score=40.55  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=105.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC------CCEEEEECCH---------HH-CCCCCCCCCCCC-C--CHHHHHHHHH-HH
Q ss_conf             57889889426899999998589------9899998076---------26-012466700221-1--2248999998-63
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG------ASTALITHKT---------ST-IGSMSCNPAIGG-L--GKGHLVREID-AL   65 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G------~~v~L~~~~~---------~~-~ael~Cnps~gg-~--akg~L~~Ei~-aL   65 (626)
                      -.|.|||||--||=.||.|++.+      ..+.|+|.+-         .. ++ --|-||+-. +  ..=.|.+|++ -+
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa-~wc~~s~~~~La~lsfkLh~~Lsdey   89 (380)
T KOG2852          11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA-KWCQPSIIQPLATLSFKLHEELSDEY   89 (380)
T ss_pred             EEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             07999888704664200344287667784159999603434355664104567-66378653223577788888777762


Q ss_pred             HHHH---HHHHHHHHHHHHHHCC--CCCCCC-----------------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
Q ss_conf             0399---9999886314887307--878555-----------------34678784999999999999708996898001
Q gi|254780808|r   66 DGLM---GRVADAAGIQFRVLNV--KKGPAV-----------------RGPRTQADRELYRLAMQREILSQENLDVIQGE  123 (626)
Q Consensus        66 gg~m---~~~aD~~~i~~r~ln~--skGpAv-----------------~alraqvDR~~fs~~vt~~l~~~pni~i~~~e  123 (626)
                      +|.-   -|+.+.-.+...+=|.  .|+|-+                 .-.-|||.-.+|-..|-...+..-+++++-+.
T Consensus        90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gk  169 (380)
T KOG2852          90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGK  169 (380)
T ss_pred             CCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCEECHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             68444452243279999602447866677652555567751000136877530117899999999998862676899866


Q ss_pred             HCCCCCCCCCEEEEEEC----CCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             01120258811322203----58633445433346643101344
Q gi|254780808|r  124 VAGFNTEKNIISSIVMQ----DNSMIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus       124 V~~l~~~~~~~~~v~~~----~g~~~~~~~viiatGtfl~g~~~  163 (626)
                      |.++.++..++.++...    .........+|++.||.++-.+-
T Consensus       170 v~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp  213 (380)
T KOG2852         170 VKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLP  213 (380)
T ss_pred             EEEEECCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCCHHHCC
T ss_conf             68863244612154023304843783423899952787332145


No 229
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.42  E-value=0.0093  Score=39.13  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf             788988942689999999858998999980762601246-67002211224899999863
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREIDAL   65 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~aL   65 (626)
                      .|-|||+|-||--||+.|||+|++|..||..+.-=|.|. .=|.|.- -|..+.+|++.|
T Consensus       308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRL-PK~IV~~EI~~l  366 (944)
T PRK12779        308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRL-PNQLIDDVVEKI  366 (944)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCC-CHHHHHHHHHHH
T ss_conf             67998857689999999997799339994478788558955876668-789999999999


No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.41  E-value=0.022  Score=36.52  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             HCCCEEEEEEEEECCCH--HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             03341566213304334--666666778999998742033
Q gi|254780808|r  358 KKISGLFLAGQINGTTG--YEEAAAQGLVAGINSARKSNK  395 (626)
Q Consensus       358 k~~~~LffAGQI~GteG--YeEAAAqGl~AGiNa~~~~~~  395 (626)
                      -.+||+|.||-+++...  ..-|+++|-+|++.|-.++..
T Consensus       475 TnvpGVFAAGDvt~~~~kQi~~A~G~Ga~AAlsA~~Yl~r  514 (515)
T TIGR03140       475 TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR  514 (515)
T ss_pred             CCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHC
T ss_conf             7999879856673898667878666479999999998734


No 231
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.37  E-value=0.0059  Score=40.55  Aligned_cols=30  Identities=33%  Similarity=0.516  Sum_probs=27.0

Q ss_pred             EEEECCCHHHHHHHHHHHHC------CCCEEEEECC
Q ss_conf             88988942689999999858------9989999807
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKL------GASTALITHK   37 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~------G~~v~L~~~~   37 (626)
                      |+|||||.+|-=|||.|.|+      +++++|+|-.
T Consensus         4 vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas   39 (466)
T PRK12416          4 VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKE   39 (466)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf             999899789999999998725555899867999779


No 232
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.36  E-value=0.011  Score=38.66  Aligned_cols=307  Identities=17%  Similarity=0.178  Sum_probs=137.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7889889426899999998589989999807626012466-700221122489999986303999999886314887307
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC-NPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV   85 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C-nps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~   85 (626)
                      .|-|||+|-||--||..|||+|++|.+||-.+.-=|.|.- =|.+. +-|..+.+|++.|-.        .+++|+. |.
T Consensus       434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFR-LPK~IV~~EI~~l~~--------lGVef~~-n~  503 (993)
T PRK12775        434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFR-LPRDIIDREIQRLKD--------IGVKFET-NK  503 (993)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCC-CCHHHHHHHHHHHHH--------CCEEEEC-CC
T ss_conf             0899783788999999999779964897168889972684377767-888999999999987--------8949983-88


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             87855534678784999999999999708996898001011202588113222035863344543334664310134443
Q gi|254780808|r   86 KKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIG  165 (626)
Q Consensus        86 skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g  165 (626)
                      .=           .|+.                    .+.+|..+.              .-.+|.|++|..+.-.+.+.
T Consensus       504 ~V-----------Gkdi--------------------tl~eL~~e~--------------gyDAVFIg~GA~~~~~lgIp  538 (993)
T PRK12775        504 VV-----------GKTF--------------------TIPQLMNDR--------------GFDAVFVAAGAGAPTFLGIP  538 (993)
T ss_pred             EE-----------CCCC--------------------CHHHHHHCC--------------CCCEEEEECCCCCCCCCCCC
T ss_conf             86-----------5607--------------------899995345--------------98989995587867318989


Q ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCC-CCCCCHHHHCH---------HHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             202332224751113310000101120-05444-45441011000---------01344321147876687774356578
Q gi|254780808|r  166 KLKIPAGRMGDSPSNSLFNSFMKFDFD-TGRLK-TGTPARLDGKT---------IIWDKTEKQFADERLIPFSFMTDKIT  234 (626)
Q Consensus       166 ~~~~~~gr~~~~~s~~ls~~l~~~~~~-~~r~k-tgtppri~~~s---------idf~~~e~q~~d~~~~~~s~~~~~~~  234 (626)
                      .+...+-    .++.   +.|.+...- ...+. ..||..+-++-         +|-...-.-.+.+.    -+.-+...
T Consensus       539 GE~l~GV----~sA~---eFLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaARTA~RLGAe~----VtivYRRt  607 (993)
T PRK12775        539 GEFAGRV----YSAN---EFLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRVARRLGAAT----VRCVYRRS  607 (993)
T ss_pred             CCCCCCC----EEHH---HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCE----EEEEEECC
T ss_conf             8888781----7779---99999763357767756786457996999899436999889999769986----79999688


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCC-CCCCCCCCCCCCCC-CCCC-CCCCC---CEEEECCCCCCEEEE
Q ss_conf             0000000012320014777640245754-1443235-64222553212335-6764-33452---013015787764543
Q gi|254780808|r  235 NRQIECGITRTNLETHRIIMENIKHSAI-YSGDIKS-YGPRYCPSIEDKIV-RFGE-RNGHQ---IFLEPEGLNTDVVYP  307 (626)
Q Consensus       235 ~~q~~~~~~~t~~~~~~~~~~~~~~~~~-~~g~~~~-~gprycPsie~k~~-~~~~-~p~h~---VqLrpE~~~~~~~n~  307 (626)
                      ..++|.+..+....-++-+.+.+-.+|. +.+.-.| +.--.|-..+..-. --|. ||-..   +-|+    ..+.+--
T Consensus       608 e~EMPA~~eEV~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le----~D~VI~A  683 (993)
T PRK12775        608 EAEAPARIEEIRHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELE----CDTVIYA  683 (993)
T ss_pred             HHHCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEE----CCEEEEC
T ss_conf             563898899998798659399962697167865886398999998166798988894786788548888----7999995


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEE-ECCCHHHHHHHHHHHHH
Q ss_conf             47766689889999998754340010011000121102354565677654033415662133-04334666666778999
Q gi|254780808|r  308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQI-NGTTGYEEAAAQGLVAG  386 (626)
Q Consensus       308 vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI-~GteGYeEAAAqGl~AG  386 (626)
                      .|++.+.      -+.++.|||+   +.|.|+ |.-   |+     ..+.-.+||+|.+|-| ||-.=-.+|-+.|=-|+
T Consensus       684 IGq~pnp------l~~~~~pgL~---~~kwGt-I~v---De-----~t~~Ts~pgVFAGGDiVtGaaTVI~AmGaGrrAA  745 (993)
T PRK12775        684 LGTKPNP------IIGQATPGLA---LNKWGN-IAA---DD-----DTQSTNMPGVFAGGDIVTGGATVILAMSAGRRAA  745 (993)
T ss_pred             CCCCCCC------CCCCCCCCCE---ECCCCC-EEE---CC-----CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             7799983------1003688822---258770-898---98-----8776688887636561255769999987089999


Q ss_pred             HHHHHHCC-CCCCCCC
Q ss_conf             99874203-3456546
Q gi|254780808|r  387 INSARKSN-KLDCICF  401 (626)
Q Consensus       387 iNa~~~~~-~~~p~~l  401 (626)
                      -..+.+++ |+..|-+
T Consensus       746 rsId~yLR~~~~~~~~  761 (993)
T PRK12775        746 KSIAAWLRLNKKKWPI  761 (993)
T ss_pred             HHHHHHHHCCCCCCCC
T ss_conf             9999999659867887


No 233
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.26  E-value=0.01  Score=38.91  Aligned_cols=39  Identities=31%  Similarity=0.380  Sum_probs=35.4

Q ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             987-63578898894268999999985899899998076260
Q gi|254780808|r    1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ||+ ++  |.|||||.=|+-=|+.+|+.|.+|.|+..+++.+
T Consensus         1 M~~ik~--VaViGAG~MG~giA~~~a~~G~~V~l~D~~~e~~   40 (292)
T PRK07530          1 MMAIKK--VGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRL   40 (292)
T ss_pred             CCCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             999888--9998966999999999996799689997988999


No 234
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.22  E-value=0.01  Score=38.85  Aligned_cols=39  Identities=28%  Similarity=0.468  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             987635788988942689999999858998999980762601
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |+++   |.|||||.=|+-=|+.+|+.|++|.|+..+++.+.
T Consensus         1 mIkk---V~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~l~   39 (289)
T PRK09260          1 MMEK---IVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQLA   39 (289)
T ss_pred             CCCE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             9676---99979688789999999968998899979989999


No 235
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.17  E-value=0.0074  Score=39.83  Aligned_cols=39  Identities=15%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHH
Q ss_conf             567765403341566213304334666-6667789999987
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSA  390 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~  390 (626)
                      .+..++| .+||+|.+|-+||.-...- |.+||.+|.-|.+
T Consensus       275 vd~~~rT-s~~~IyA~GDv~g~~~l~~~A~~~~~~~~~~~~  314 (438)
T PRK07251        275 VDKHCQT-SVPGVFAVGDVNGGLQFTYISLDDFRIVFSYLT  314 (438)
T ss_pred             CCCCCCC-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             1897766-786299922557886773688999999999970


No 236
>KOG4254 consensus
Probab=96.09  E-value=0.007  Score=39.97  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=45.5

Q ss_pred             HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             99999999708996898001011202588113222035863344543334664310
Q gi|254780808|r  104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       104 s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      +.++-+.++.|-.=-....+|.+|..+.++++||.+.+|.+..++.|+=-++++-.
T Consensus       267 s~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T  322 (561)
T KOG4254         267 SFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT  322 (561)
T ss_pred             HHHHHHHHHHCCCEEEEHHHHHHEECCCCEEEEEEECCCCEEEEEEEECCCCHHHH
T ss_conf             99999999860614210211446031388278789558858771156517846777


No 237
>PRK06370 mercuric reductase; Validated
Probab=96.08  E-value=0.008  Score=39.57  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCCC-----CCCC-C-CCCCCHHHHHHHHHHCCCC
Q ss_conf             5677654033415662133043346-666667789999987420334-----5654-6-5321079999998860787
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKSNKL-----DCIC-F-SRTDSYIGVMIDDLTSKGV  420 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGY-eEAAAqGl~AGiNa~~~~~~~-----~p~~-l-~R~eaYiGVlIDDLitkg~  420 (626)
                      .|..+|| .+||+|.||-+||---- -.|..||.+|+-|+...-...     -|.+ + +=.=|.+|.--+.+..+|.
T Consensus       292 Vd~~~~T-s~p~IyA~GDv~g~~~lah~A~~eg~~a~~n~~~~~~~~~~~~~vP~~vft~PeiA~vG~te~~a~~~g~  368 (459)
T PRK06370        292 VDDQLRT-TNPGIYAAGDCNGRGAFTHTAYNDAEIVAANLLDGGPRKVSDRIVPYATYTDPPLARVGMTEAEARKSGR  368 (459)
T ss_pred             ECCCCEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHCCC
T ss_conf             7997563-7874498311468867745899999999999836997432024430466227546885389999987699


No 238
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803    During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.06  E-value=0.0051  Score=40.99  Aligned_cols=366  Identities=21%  Similarity=0.221  Sum_probs=185.5

Q ss_pred             CEEEECCCHHHH----HHHHHHHHCCCCEEEEECC-HHH---CCC-CCC-CCCCCCCCHH------------------HH
Q ss_conf             788988942689----9999998589989999807-626---012-466-7002211224------------------89
Q gi|254780808|r    7 DVIVIGGGHAGC----EAAAVAAKLGASTALITHK-TST---IGS-MSC-NPAIGGLGKG------------------HL   58 (626)
Q Consensus         7 dViVIGaG~AG~----EAA~~~Ar~G~~v~L~~~~-~~~---~ae-l~C-nps~gg~akg------------------~L   58 (626)
                      ||.|||||+.||    ||++..-..|+|+.|++-- .|+   +|+ |+- |-=+|-.|.+                  =|
T Consensus         1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~eRSGAVAQGLsAINtY~g~~Grs~~eN~~eDyVRyvr~DlMGl   80 (651)
T TIGR02061         1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVERSGAVAQGLSAINTYLGLRGRSERENDAEDYVRYVRLDLMGL   80 (651)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHCCHHHH
T ss_conf             94787178552027899998740688379996114654221567667898865167766566888211032110001234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HCC------------------CCCC-CCCCHHHHH------HHHHHHHHH
Q ss_conf             999986303999999886314887------307------------------8785-553467878------499999999
Q gi|254780808|r   59 VREIDALDGLMGRVADAAGIQFRV------LNV------------------KKGP-AVRGPRTQA------DRELYRLAM  107 (626)
Q Consensus        59 ~~Ei~aLgg~m~~~aD~~~i~~r~------ln~------------------skGp-Av~alraqv------DR~~fs~~v  107 (626)
                      |||==..  =|+|..|.|==||--      -|.                  +||. -|+.-|=|+      =+=.-+++.
T Consensus        81 vREDL~f--D~aRHVD~~VHlFE~WGLP~w~~p~dG~y~eGaaakvaGkslrkGdaPvReGrWQIMIhGESYKpIvAEAA  158 (651)
T TIGR02061        81 VREDLVF--DVARHVDDAVHLFEEWGLPLWKKPKDGKYLEGAAAKVAGKSLRKGDAPVREGRWQIMIHGESYKPIVAEAA  158 (651)
T ss_pred             HHHHHHH--HHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             6788874--12014175100122168963318688874231144442012103788723774158754766604899998


Q ss_pred             HHHHHCCCCCEEEHHHHCCCCCCCC---CEEE-----EEECCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCCC
Q ss_conf             9999708996898001011202588---1132-----22035863344543334664310134443-2023322247511
Q gi|254780808|r  108 QREILSQENLDVIQGEVAGFNTEKN---IISS-----IVMQDNSMIRCSTVVLTTGTFLRGVIHIG-KLKIPAGRMGDSP  178 (626)
Q Consensus       108 t~~l~~~pni~i~~~eV~~l~~~~~---~~~~-----v~~~~g~~~~~~~viiatGtfl~g~~~~g-~~~~~~gr~~~~~  178 (626)
                      +..+-...|| ..|=-|++|+.|.+   +|+|     |.+..=-.+.|++||||||-..+  ++.. ..--.+||.-.+.
T Consensus       159 K~a~g~~~ni-~eRifi~~LL~Dkn~PNriAGAVGFnvR~~~~hvFKaktvivAaGGA~n--~yrPRStGEgaGR~WYa~  235 (651)
T TIGR02061       159 KKAVGKDRNI-FERIFIVKLLLDKNKPNRIAGAVGFNVREGEYHVFKAKTVIVAAGGASN--VYRPRSTGEGAGRVWYAV  235 (651)
T ss_pred             HHHCCCCCCC-EEHEEEEEEECCCCCCCCEECCCEEEECCCCEEEEECCEEEEECCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf             7522754441-1010211000268888712201100101786569871245663066100--135762443677500364


Q ss_pred             C-----------CCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHH-HHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             1-----------331000010112005444454410110000134-43211478766877743565-7800000000123
Q gi|254780808|r  179 S-----------NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWD-KTEKQFADERLIPFSFMTDK-ITNRQIECGITRT  245 (626)
Q Consensus       179 s-----------~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~-~~e~q~~d~~~~~~s~~~~~-~~~~q~~~~~~~t  245 (626)
                      -           .+-.-...+..|-.-|||||--|. -+=.+.|. ++.=..|++   +.+-.... ...+......-+.
T Consensus       236 w~~GS~Y~m~~~aGA~mT~mEnRfvpaRFKDGYGPV-GAwFL~fK~ka~N~~GEe---Y~~~~~a~L~~y~~~gya~p~~  311 (651)
T TIGR02061       236 WDAGSAYTMLLKAGAKMTQMENRFVPARFKDGYGPV-GAWFLFFKAKAKNALGEE---YIKTRRAELKEYKDKGYAKPEL  311 (651)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH-HHHHHHHHHHCCCCCCCC---HHHHCHHHCCCCCCCCCCCCCC
T ss_conf             566357899998633243220340220331788876-899988886305788612---3551302203557753458620


Q ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCC--------------CCCCEEEECCC
Q ss_conf             200147776402457541443235642225532123356-----------76433--------------45201301578
Q gi|254780808|r  246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVR-----------FGERN--------------GHQIFLEPEGL  300 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~-----------~~~~p--------------~h~VqLrpE~~  300 (626)
                      ...||.-|+..+..=.+......|.||=|--..+-=-.-           .-+.-              ||.--.-|++.
T Consensus       312 shrthrPIPTcLRNH~~~~E~~~GrgPIyM~T~eAlq~~~~~l~~~~~Khlee~awedFLdMtVgQA~LWActn~dP~e~  391 (651)
T TIGR02061       312 SHRTHRPIPTCLRNHALLREVREGRGPIYMDTKEALQDLAATLDKKKLKHLEEEAWEDFLDMTVGQAVLWACTNVDPKER  391 (651)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             24557888784144699999960879811053888752530103355433676544545101288888887507887778


Q ss_pred             CC----CEEEECC-------CCCCCC-HHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             77----6454347-------766689-88999999875434001001100012110235456567765403341566213
Q gi|254780808|r  301 NT----DVVYPNG-------ISTALP-EEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQ  368 (626)
Q Consensus       301 ~~----~~~n~vG-------FqTsL~-~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQ  368 (626)
                      .+    ++=|+-|       |=.|=| .+.                    +==||....|+-+.-+ +.-.++|||-+|-
T Consensus       392 ~sE~~p~EPY~mGSHsg~cG~WvsGPdEd~--------------------~PeeY~~~~~nG~~YN-RMTTVeGLF~~gD  450 (651)
T TIGR02061       392 NSELAPAEPYVMGSHSGECGIWVSGPDEDL--------------------VPEEYAVRAANGKKYN-RMTTVEGLFAIGD  450 (651)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCC--------------------CCHHHHHHCCCCCCCC-CCCCCHHHHHCCC
T ss_conf             787666677100522246762342775677--------------------8705764156886125-4212014653013


Q ss_pred             EECCCHHHHHHHH---HHHHHHHHHHHCCC-CCCCCCC
Q ss_conf             3043346666667---78999998742033-4565465
Q gi|254780808|r  369 INGTTGYEEAAAQ---GLVAGINSARKSNK-LDCICFS  402 (626)
Q Consensus       369 I~GteGYeEAAAq---Gl~AGiNa~~~~~~-~~p~~l~  402 (626)
                      =-|-+|--=|+++   |=|||=.|.|.+.. +.++..-
T Consensus       451 ~vGa~pHkFSSGSftEGR~AaKaavr~ildG~k~~~~~  488 (651)
T TIGR02061       451 AVGASPHKFSSGSFTEGRLAAKAAVRYILDGKKEGKEV  488 (651)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             46888866776641578899999977753367888854


No 239
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.02  E-value=0.053  Score=33.74  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             HHHHHHCCCEEEEEEEEE-CCCH-HHHHHHHHHHHHHHHH
Q ss_conf             776540334156621330-4334-6666667789999987
Q gi|254780808|r  353 PTLETKKISGLFLAGQIN-GTTG-YEEAAAQGLVAGINSA  390 (626)
Q Consensus       353 ~tLe~k~~~~LffAGQI~-GteG-YeEAAAqGl~AGiNa~  390 (626)
                      ..++.-.+||+|.+|-++ |--= ---|..||.+|.-|+.
T Consensus       342 d~~~~Ts~p~IyAiGDV~~G~p~Lah~A~~eg~vaa~~i~  381 (541)
T PTZ00052        342 KDLSCTNVPSIFAVGDVAEGVPELAPVAIKAGEILARRLF  381 (541)
T ss_pred             ECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             3366677773999505468964248999999999999984


No 240
>KOG2844 consensus
Probab=96.02  E-value=0.008  Score=39.59  Aligned_cols=165  Identities=24%  Similarity=0.308  Sum_probs=87.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH---CCCCC---C-----CC-------------------------
Q ss_conf             357889889426899999998589989999807626---01246---6-----70-------------------------
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---IGSMS---C-----NP-------------------------   48 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~---~ael~---C-----np-------------------------   48 (626)
                      .-||+|||||-+||-+|+.+|++|.+..+++-+-..   -.+++   |     ++                         
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~t  118 (856)
T KOG2844          39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLHT  118 (856)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             65579985785047899999971465247876411036656333010320368960399988788999999998619976


Q ss_pred             ---CCCCC--CHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCCCCC-CCCCHH--HHHHHHHHHHHHHHHH
Q ss_conf             ---02211--224-899999863039999--------998863148873078785-553467--8784999999999999
Q gi|254780808|r   49 ---AIGGL--GKG-HLVREIDALDGLMGR--------VADAAGIQFRVLNVKKGP-AVRGPR--TQADRELYRLAMQREI  111 (626)
Q Consensus        49 ---s~gg~--akg-~L~~Ei~aLgg~m~~--------~aD~~~i~~r~ln~skGp-Av~alr--aqvDR~~fs~~vt~~l  111 (626)
                         -.||+  |.. +=+-|.+.|=|.-.-        -..++.-+|-.||..+-- +-+.|.  + +|-..--.+.-..-
T Consensus       119 Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~-~DP~~lC~ala~~A  197 (856)
T KOG2844         119 GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGV-MDPAGLCQALARAA  197 (856)
T ss_pred             CEECCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHEEEEECCCCCC-CCHHHHHHHHHHHH
T ss_conf             32427816870477789999999976433153105538999988675656667401203588764-48899999999999


Q ss_pred             HCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             708996898001011202588113222035863344543334664310134443202332
Q gi|254780808|r  112 LSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPA  171 (626)
Q Consensus       112 ~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~  171 (626)
                      .+.--+-+..--|++|........+|.|..|. +.+..+|-|||-..+..-.....+.+.
T Consensus       198 ~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL  256 (856)
T KOG2844         198 SALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPL  256 (856)
T ss_pred             HHCCCEEEECCCCCEEEEECCCCCCEECCCCC-EECCEEEECHHHHHHHHHHHCCCCCCC
T ss_conf             85384798148742577503775543046764-443527852227798765630785463


No 241
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.98  E-value=0.016  Score=37.43  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             98763578898894268999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.-|+  |.|||||.=|+-=|+.+|+.|++|.|+..+++.+
T Consensus         1 M~i~~--VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l   39 (288)
T PRK08293          1 MTIKK--VTVAGAGVLGSQIAFQTAFKGFDVTIYDISEEAL   39 (288)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             99578--9998978899999999995799289998988999


No 242
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.97  E-value=0.011  Score=38.72  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             HHHHHHCCCEEEEEEEEECCC--HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             776540334156621330433--4666666778999998742033
Q gi|254780808|r  353 PTLETKKISGLFLAGQINGTT--GYEEAAAQGLVAGINSARKSNK  395 (626)
Q Consensus       353 ~tLe~k~~~~LffAGQI~Gte--GYeEAAAqGl~AGiNa~~~~~~  395 (626)
                      ..++| .+||+|.||-|+-..  ==+-|++.|-+|+++|-+++..
T Consensus       267 e~m~T-nVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~aerYi~~  310 (555)
T TIGR03143       267 EDMET-NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKE  310 (555)
T ss_pred             CCCCC-CCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf             99705-999889883452898773547087579999999999999


No 243
>KOG0405 consensus
Probab=95.96  E-value=0.035  Score=35.00  Aligned_cols=138  Identities=22%  Similarity=0.311  Sum_probs=78.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7635788988942689999999858998999980762---6012466700221122489999986303999999886314
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS---TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQ   79 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~---~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~   79 (626)
                      .+.||-.|||||--|.-+|-.+|..|++|.|+|..-.   ++----|-|-     |  ++.-..-++..|--+.|.    
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPK-----K--vm~~~a~~~~~~~da~~y----   86 (478)
T KOG0405          18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPK-----K--VMWYAADYSEEMEDAKDY----   86 (478)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCC-----E--EEEEHHHHHHHHHHHHHC----
T ss_conf             44236699847861367767787538537998637786744786045641-----3--677444556775456642----


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCC--CCCCCCCCCCC
Q ss_conf             8873078785553467878499999999999---970899689800101120258811322203586--33445433346
Q gi|254780808|r   80 FRVLNVKKGPAVRGPRTQADRELYRLAMQRE---ILSQENLDVIQGEVAGFNTEKNIISSIVMQDNS--MIRCSTVVLTT  154 (626)
Q Consensus        80 ~r~ln~skGpAv~alraqvDR~~fs~~vt~~---l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~--~~~~~~viiat  154 (626)
                       -+-+.-+|.=-|-.=- --|+.|-.....+   ..+..++.+++++..=..+..   +.|...+++  .+.++.+.+||
T Consensus        87 -G~~~~~~~~fdW~~ik-~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~---v~V~~~d~~~~~Ytak~iLIAt  161 (478)
T KOG0405          87 -GFPINEEGSFDWKVIK-QKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE---VEVEVNDGTKIVYTAKHILIAT  161 (478)
T ss_pred             -CCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC---EEEEECCCEEEEEECCEEEEEE
T ss_conf             -9853444677679987-5116899988789885423154069962678758994---4799538815787214089973


Q ss_pred             CC
Q ss_conf             64
Q gi|254780808|r  155 GT  156 (626)
Q Consensus       155 Gt  156 (626)
                      |-
T Consensus       162 Gg  163 (478)
T KOG0405         162 GG  163 (478)
T ss_pred             CC
T ss_conf             78


No 244
>PRK07660 consensus
Probab=95.95  E-value=0.017  Score=37.27  Aligned_cols=40  Identities=28%  Similarity=0.391  Sum_probs=35.8

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             987635788988942689999999858998999980762601
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |.-|+  |.|||||.=|+-=|+.+|+.|++|.|+..+++.+.
T Consensus         1 M~Ik~--VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~   40 (283)
T PRK07660          1 MGVQK--IVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQEQLD   40 (283)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             99788--99989698999999999966981899979889999


No 245
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.90  E-value=0.013  Score=38.16  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHH
Q ss_conf             56776540334156621330433466-66667789999987
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSA  390 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~  390 (626)
                      .|..+|| .+|++|-||-++|---.. .|..||.+|+-|+.
T Consensus       293 vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~eg~~a~~ni~  332 (462)
T PRK06416        293 VDEQMRT-NVPNIYAIGDVVGGPMLAHKASAEGKIAAEAIA  332 (462)
T ss_pred             CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             5666325-997458714667887765899999999999875


No 246
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.90  E-value=0.011  Score=38.46  Aligned_cols=38  Identities=11%  Similarity=0.103  Sum_probs=23.8

Q ss_pred             HHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHH
Q ss_conf             67765403341566213304334666-6667789999987
Q gi|254780808|r  352 FPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSA  390 (626)
Q Consensus       352 ~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~  390 (626)
                      +..++| ..|++|.+|-++|.--..- |.+||.+|.-|..
T Consensus       277 d~~~~T-s~~~IyA~GDv~g~~~lah~A~~e~~~~~~~i~  315 (441)
T PRK08010        277 DKYLHT-TADNIWAMGDVTGGLQFTYISLDDYRIVRDELL  315 (441)
T ss_pred             CCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             898873-887689970268986763689999999999983


No 247
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.86  E-value=0.019  Score=36.91  Aligned_cols=39  Identities=26%  Similarity=0.356  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             98763578898894268999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.-|+  |.|||||.-|+-=|+.+|+.|++|.|+..+++.+
T Consensus         1 m~i~~--VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~l   39 (282)
T PRK05808          1 MSIQK--IGVIGAGTMGNGIAQVCAVAGYDVVMVDISDEAV   39 (282)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             97268--9998978899999999995799389997998999


No 248
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.86  E-value=0.012  Score=38.33  Aligned_cols=39  Identities=36%  Similarity=0.581  Sum_probs=35.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             578898894268999999985899899998076260124
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      -.|+|||+|-||..||..+.++|+.|..+..+++++-++
T Consensus        21 a~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~~~   59 (150)
T pfam01262        21 AKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQL   59 (150)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             779998987899999999986799899972999999999


No 249
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86  E-value=0.039  Score=34.68  Aligned_cols=42  Identities=26%  Similarity=0.506  Sum_probs=35.2

Q ss_pred             HHHCCCEEEEEEEEECCCH--HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             5403341566213304334--66666677899999874203345
Q gi|254780808|r  356 ETKKISGLFLAGQINGTTG--YEEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       356 e~k~~~~LffAGQI~GteG--YeEAAAqGl~AGiNa~~~~~~~~  397 (626)
                      .--.+||+|-||-|+.-.+  ..-|+++|.+|+.+|.+++....
T Consensus       261 ~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~~  304 (305)
T COG0492         261 METSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESLA  304 (305)
T ss_pred             CEECCCCEEECHHHCCCCCCEEEEHHCCHHHHHHHHHHHHHHCC
T ss_conf             27045888986233156321220021538999999998665406


No 250
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.84  E-value=0.012  Score=38.28  Aligned_cols=69  Identities=19%  Similarity=0.280  Sum_probs=37.7

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCHHHHHHHHHHCCCC
Q ss_conf             56776540334156621330433466-66667789999987420334565465------321079999998860787
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYE-EAAAQGLVAGINSARKSNKLDCICFS------RTDSYIGVMIDDLTSKGV  420 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYe-EAAAqGl~AGiNa~~~~~~~~p~~l~------R~eaYiGVlIDDLitkg~  420 (626)
                      .+..+|| .+||+|-+|-++|-.-.. -|..||.+|+-|..-.-...++..++      =.-|.+|.--+++..+|.
T Consensus       296 vd~~~~T-s~p~IyA~GDv~g~~~lah~A~~qg~~aa~~i~g~~~~~~~~~vP~~vft~Peia~VGlte~~a~~~g~  371 (472)
T PRK06467        296 VDKQCRT-NVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGI  371 (472)
T ss_pred             CCCCCCC-CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHCCC
T ss_conf             4997535-886358611246887766799999999999866999655666541599815535886388999987699


No 251
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.83  E-value=0.027  Score=35.86  Aligned_cols=59  Identities=29%  Similarity=0.481  Sum_probs=44.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC--CCCCCCCHH-HHHHHHHHHHH
Q ss_conf             78898894268999999985899899998076260124667--002211224-89999986303
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN--PAIGGLGKG-HLVREIDALDG   67 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn--ps~gg~akg-~L~~Ei~aLgg   67 (626)
                      .|-|||-|=||-=||=||+|.|+.|+.|| |-|++|=|+-=  |-++ +=|+ |+.|=|+.|-.
T Consensus       153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfE-R~DR~GGLL~YGIPnmK-LdK~e~v~RRi~~l~a  214 (517)
T TIGR01317       153 KVAVVGSGPAGLAAADQLNRAGHTVTVFE-REDRVGGLLRYGIPNMK-LDKEEIVDRRIDLLEA  214 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf             68997567579999999853588389974-36788863024888743-3738899999999874


No 252
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=95.83  E-value=0.079  Score=32.53  Aligned_cols=96  Identities=18%  Similarity=0.388  Sum_probs=71.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK   87 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk   87 (626)
                      .+|||||==|||=|..-+++|++|+.+||-+.=+                                              
T Consensus       181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drIL----------------------------------------------  214 (481)
T TIGR01350       181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRIL----------------------------------------------  214 (481)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC----------------------------------------------
T ss_conf             6998786677889999985398089994575003----------------------------------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCC---CCCCCCCEE-EEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf             855534678784999999999999708996898001011---202588113-2220358---6334454333466431
Q gi|254780808|r   88 GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG---FNTEKNIIS-SIVMQDN---SMIRCSTVVLTTGTFL  158 (626)
Q Consensus        88 GpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~---l~~~~~~~~-~v~~~~g---~~~~~~~viiatGtfl  158 (626)
                       |.-       |++ .|+.|++.|+..=|++++-+.-..   +...++.+. .+.....   ..+.+..|.+|.|=-.
T Consensus       215 -p~~-------D~e-vSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~p  283 (481)
T TIGR01350       215 -PGE-------DAE-VSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKP  283 (481)
T ss_pred             -CCC-------CHH-HHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCC
T ss_conf             -543-------168-999999999744984985485442335775287899999987998058898739999842434


No 253
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.79  E-value=0.01  Score=38.83  Aligned_cols=40  Identities=30%  Similarity=0.563  Sum_probs=35.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             5788988942689999999858998999980762601246
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      -+|+|||||-+|.|||-.+.-+|.+|..++.+++++-+|-
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ld  208 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD  208 (371)
T ss_pred             CCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf             6089987761240699997236870699952778876406


No 254
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.79  E-value=0.015  Score=37.68  Aligned_cols=69  Identities=19%  Similarity=0.260  Sum_probs=41.6

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHHHHCCCC--C----C-CCCC-CCCCHHHHHHHHHHCCCC
Q ss_conf             567765403341566213304334666-6667789999987420334--5----6-5465-321079999998860787
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSARKSNKL--D----C-ICFS-RTDSYIGVMIDDLTSKGV  420 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~~~~~~~--~----p-~~l~-R~eaYiGVlIDDLitkg~  420 (626)
                      .+..++| .+||+|.+|-++|---..- |..||.+|+-|++-.-...  +    | .++. =.-|++|.--+....+|.
T Consensus       296 vd~~~~T-s~~~IyA~GDv~g~~~Lah~A~~eg~~a~~~i~~~~~~~~~d~~~iP~~vft~PeiA~VGlte~eA~~~g~  373 (467)
T PRK07818        296 IDDYMRT-NVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLPLGDYRMMPRATFCQPQVASFGLTEEQAREEGY  373 (467)
T ss_pred             ECCCCCC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCC
T ss_conf             8998864-78739997226888787148999999999986599986334556665499757876997389999986499


No 255
>pfam00996 GDI GDP dissociation inhibitor.
Probab=95.74  E-value=0.016  Score=37.49  Aligned_cols=37  Identities=27%  Similarity=0.489  Sum_probs=33.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8763578898894268999999985899899998076
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+.+|||||+|-||.=|=-|.+|++.|.+|+-+--|.
T Consensus         1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~   37 (439)
T pfam00996         1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRND   37 (439)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9985029997998799999999973699899977998


No 256
>KOG1238 consensus
Probab=95.70  E-value=0.014  Score=37.92  Aligned_cols=33  Identities=45%  Similarity=0.691  Sum_probs=29.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf             7635788988942689999999858-99899998
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKL-GASTALIT   35 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~-G~~v~L~~   35 (626)
                      ...||.||||||-|||=-|-.|+.- -.+|+|+|
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLE   88 (623)
T KOG1238          55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLE   88 (623)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf             3579989989873127888765138873499995


No 257
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.70  E-value=0.026  Score=35.99  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             987635788988942689999999858998999980762601
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |--|+  |.|||||.-|+-=|..+|+.|++|.|+..+++.+.
T Consensus         1 M~Ik~--VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~   40 (291)
T PRK06035          1 MDIKV--IGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILK   40 (291)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             99588--99988768899999999958998899989989999


No 258
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.69  E-value=0.016  Score=37.38  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=22.1

Q ss_pred             HHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHH
Q ss_conf             67765403341566213304334666-66677899999
Q gi|254780808|r  352 FPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGIN  388 (626)
Q Consensus       352 ~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiN  388 (626)
                      +..+|| .+|++|.+|-+||..--.- |..||.+|.-|
T Consensus       298 d~~~~T-s~~~IyA~GDv~g~~~l~h~A~~eg~~~~~~  334 (466)
T PRK06115        298 NEHHRT-SVPGVWVIGDVTSGPMLAHKAEDEAVACIER  334 (466)
T ss_pred             CCCCCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             776544-7887798423789867705899999999999


No 259
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=95.64  E-value=0.012  Score=38.35  Aligned_cols=147  Identities=19%  Similarity=0.279  Sum_probs=83.6

Q ss_pred             CEEEECCCHHHHHHHHHH--HHCCCCEEEEECCHHHCCCCCCCCCCCCCCH-----------HH-HHHHHHHH---HHHH
Q ss_conf             788988942689999999--8589989999807626012466700221122-----------48-99999863---0399
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVA--AKLGASTALITHKTSTIGSMSCNPAIGGLGK-----------GH-LVREIDAL---DGLM   69 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~--Ar~G~~v~L~~~~~~~~ael~Cnps~gg~ak-----------g~-L~~Ei~aL---gg~m   69 (626)
                      ||||||||||||==|+.|  ||=-.++.++|          .++++||...           +| ++..+..-   ||--
T Consensus         1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IE----------a~~~igGNHtWSffd~Dls~~qhawla~lv~~~WpgGYe   70 (392)
T TIGR01789         1 DVIVVGGGLAGGLIALRLQDARPDLRILVIE----------AAASIGGNHTWSFFDADLSDAQHAWLADLVVYDWPGGYE   70 (392)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEEE----------CCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf             9788727335789999875259872899984----------377668875301003666743577765340132889713


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEEC-----CCCC
Q ss_conf             99998863148873078785553467878499999999999970899689800101120258811322203-----5863
Q gi|254780808|r   70 GRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQ-----DNSM  144 (626)
Q Consensus        70 ~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~-----~g~~  144 (626)
                      .|=+..    -|-||+    |=.+.    --..|++.++.++-.+.  -++...|.++..+.     |.+.     .|..
T Consensus        71 VRFp~~----rrkL~t----aY~S~----tStrf~e~l~q~fpe~s--~~~~r~a~~~~Ad~-----V~L~PsqyG~g~~  131 (392)
T TIGR01789        71 VRFPKR----RRKLKT----AYLSM----TSTRFREELEQKFPERS--VLLDRKAVEVDADA-----VDLEPSQYGNGRV  131 (392)
T ss_pred             ECCHHH----HHHHHC----CCCCC----HHHHHHHHHHHHCCCCE--EEECCEEEEEEECE-----EEECCCCCCCCCE
T ss_conf             335555----433210----22110----01778999998768720--56401567766075-----6626544689626


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             34454333466431013444320233222475111331
Q gi|254780808|r  145 IRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSL  182 (626)
Q Consensus       145 ~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~l  182 (626)
                      +.|.+||-+=|=-=+.-+..|-+.|-+--+-.....++
T Consensus       132 i~A~~VID~Rg~~P~~~L~~GfQ~FlG~e~RL~~PHGl  169 (392)
T TIGR01789       132 IRARAVIDARGFKPSAALKVGFQVFLGREVRLAEPHGL  169 (392)
T ss_pred             EEEEEEEECCCCCCCCCCCCCHHHHHCCCHHCCCCCCC
T ss_conf             76402772588877721025323442320001578888


No 260
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.62  E-value=0.04  Score=34.60  Aligned_cols=102  Identities=23%  Similarity=0.386  Sum_probs=61.5

Q ss_pred             EEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCHHHCC------CCCC----C-----------------CC
Q ss_conf             88988942-----------689999999858998999980762601------2466----7-----------------00
Q gi|254780808|r    8 VIVIGGGH-----------AGCEAAAVAAKLGASTALITHKTSTIG------SMSC----N-----------------PA   49 (626)
Q Consensus         8 ViVIGaG~-----------AG~EAA~~~Ar~G~~v~L~~~~~~~~a------el~C----n-----------------ps   49 (626)
                      |.|||+|.           +|+.|.+++-..|+.|.|+..||.++-      --++    .                 |+
T Consensus        10 vLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~~   89 (1063)
T PRK05294         10 ILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPT   89 (1063)
T ss_pred             EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             99989882510372332656999999999869989998798544107877664378727989999999997599978866


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             22112248999998630399999988631488730787855534678784999999999999708996898
Q gi|254780808|r   50 IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        50 ~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                      +||--.=.|..|+..-|-     -++.+|  ++|-++    ..+...--||++|.+.|++.=+..|.-.++
T Consensus        90 ~GGQtaLnla~~L~~~Gi-----L~~~~v--~lLGt~----~~~I~~aedR~~F~~~l~~i~~p~~~s~~~  149 (1063)
T PRK05294         90 MGGQTALNLALELAESGV-----LEKYGV--ELIGAK----LEAIDKAEDRELFKEAMKKIGLPVPRSGIA  149 (1063)
T ss_pred             CCCHHHHHHHHHHHHCCC-----HHHCCC--EEECCC----HHHHHHHHCHHHHHHHHHHCCCCCCCCHHC
T ss_conf             778059999999997596-----776497--275699----999997778999999999769999972530


No 261
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338   This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=95.60  E-value=0.016  Score=37.48  Aligned_cols=333  Identities=19%  Similarity=0.207  Sum_probs=170.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---CCHH--------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             63578898894268999999985899899998---0762--------601246670022112248999998630399999
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALIT---HKTS--------TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV   72 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~---~~~~--------~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~   72 (626)
                      .+||.||||||=-|-=||=.+|..|.+|.|+-   ..|.        +++--=|=|=       -|++---.||..+-.-
T Consensus         1 ydyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPK-------KLMHqAa~~G~~lkld   73 (513)
T TIGR01438         1 YDYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPK-------KLMHQAALLGKALKLD   73 (513)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC-------HHHHHHHHHHHHHHHH
T ss_conf             964279985897346899999860991899963356988821476753575055483-------5678888876887553


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHH--H--HHHHHHHHHHHHHHCCC---CCEEEHHHHCCCC-----CCCCCEEEEEE-
Q ss_conf             9886314887307878555346787--8--49999999999997089---9689800101120-----25881132220-
Q gi|254780808|r   73 ADAAGIQFRVLNVKKGPAVRGPRTQ--A--DRELYRLAMQREILSQE---NLDVIQGEVAGFN-----TEKNIISSIVM-  139 (626)
Q Consensus        73 aD~~~i~~r~ln~skGpAv~alraq--v--DR~~fs~~vt~~l~~~p---ni~i~~~eV~~l~-----~~~~~~~~v~~-  139 (626)
                      +++              =||-.--|  +  |=...++.|++.|.+.-   .+.+.+.-|+=+.     .+++++..-.| 
T Consensus        74 s~~--------------YGWn~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~  139 (513)
T TIGR01438        74 SKK--------------YGWNVEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATD  139 (513)
T ss_pred             HHH--------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEE
T ss_conf             565--------------188853664322237899998864555400320000101540266300244278468999860


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHH
Q ss_conf             ----3586334454333466431013444320233222475111331000010112005444454410110000134432
Q gi|254780808|r  140 ----QDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTE  215 (626)
Q Consensus       140 ----~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e  215 (626)
                          .--..+.++.++||||.         .-.+++.--|+.-.---|+++..+...-     |-.=.+-+.|+..+.+-
T Consensus       140 kGd~~ke~~~sa~~~lIaTG~---------RP~yp~~ipGaKEl~ItSDDlFsL~~~P-----GKTLvVGasYVALECaG  205 (513)
T TIGR01438       140 KGDKKKEEILSAKRVLIATGL---------RPKYPDDIPGAKELSITSDDLFSLKKVP-----GKTLVVGASYVALECAG  205 (513)
T ss_pred             CCCCCCCEEEECCEEEEECCC---------CCCCCCCCCCCCCCCCCCHHHCCCCCCC-----CCEEEECCCHHHHHHHH
T ss_conf             678763204503636980478---------8888888888401101301220366886-----86578776142357788


Q ss_pred             HCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             114787668777435657--80000000012320014777640245754144323564222553212335676433-452
Q gi|254780808|r  216 KQFADERLIPFSFMTDKI--TNRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERN-GHQ  292 (626)
Q Consensus       216 ~q~~d~~~~~~s~~~~~~--~~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p-~h~  292 (626)
                      -..+=...--.--.+...  +-+|+.- ......+++.+...+-- -|.-...+..-    -|.--.+++.|.|++ ...
T Consensus       206 FL~~~g~dV~V~VRSI~LrGFDqdca~-kv~ehm~e~Gvkfk~~~-~p~kve~~~~G----tPGrlk~~v~ftD~~G~~~  279 (513)
T TIGR01438       206 FLAALGLDVTVLVRSILLRGFDQDCAV-KVKEHMKEQGVKFKEQV-VPKKVEKVDSG----TPGRLKVLVKFTDKDGNTI  279 (513)
T ss_pred             HHHHCCCCEEEEEEEEECCCCCHHHHH-HHHHHHHCCCEEEEEEE-EEEEEEEECCC----CCCEEEEEEEEECCCCCCC
T ss_conf             986339964999988523475778999-99988640896887014-67876651588----9951789999845788744


Q ss_pred             CEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECC
Q ss_conf             01301578776454347766689889999998754340010011000121102354565677654033415662133043
Q gi|254780808|r  293 IFLEPEGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGT  372 (626)
Q Consensus       293 VqLrpE~~~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~Gt  372 (626)
                      .     ....|.+|=.|=...++         . =+|||+       .|+-|==+-+-+-..++--.+|.+|.-|-|  +
T Consensus       280 ~-----eeYdTVl~AiGR~~~~~---------~-lnLen~-------gv~~nk~~gKI~ade~~~tn~p~iyAvGDi--~  335 (513)
T TIGR01438       280 E-----EEYDTVLYAIGRKADLK---------K-LNLENV-------GVKVNKKSGKILADELERTNVPSIYAVGDI--V  335 (513)
T ss_pred             C-----CCCCEEEEEECCCCCCC---------C-CCCCCC-------CEEEECCCCCEEECCCCCCCCCCEEEEEEE--E
T ss_conf             4-----23011566625876644---------3-163213-------207615578775032335788827886456--5


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             34666666778999998742033456546
Q gi|254780808|r  373 TGYEEAAAQGLVAGINSARKSNKLDCICF  401 (626)
Q Consensus       373 eGYeEAAAqGl~AGiNa~~~~~~~~p~~l  401 (626)
                      |+=.|=+=--+=||-=.|+++-+....+.
T Consensus       336 e~~~ELtPvAIqaG~lLA~RLf~~S~~i~  364 (513)
T TIGR01438       336 EDKLELTPVAIQAGKLLADRLFKDSKEIV  364 (513)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             48655543778877999987414882688


No 262
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.46  E-value=0.022  Score=36.42  Aligned_cols=72  Identities=15%  Similarity=0.275  Sum_probs=43.5

Q ss_pred             HHHHHHHHCCCEEEEEEEEECCCHH-HHHHHHHHHHHHHHHHHCCCCC----C---CCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             5677654033415662133043346-6666677899999874203345----6---546532107999999886078774
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGTTGY-EEAAAQGLVAGINSARKSNKLD----C---ICFSRTDSYIGVMIDDLTSKGVLE  422 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~GteGY-eEAAAqGl~AGiNa~~~~~~~~----p---~~l~R~eaYiGVlIDDLitkg~~E  422 (626)
                      -+..++| .+||+|.||-+||---. -.|..||.+|+-|+.......+    |   |+.| .=|++|.--+++..+|.  
T Consensus       306 vd~~~~T-s~p~IyA~GDv~g~~~l~~~A~~eg~~a~~~~~g~~~~~~~~~vP~~vft~P-eia~vGlte~~a~~~g~--  381 (475)
T PRK06327        306 VDDHCRT-NVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSP-EIAWVGKTEQQLKAEGV--  381 (475)
T ss_pred             CCCCCCC-CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CEEEEECCHHHHHHCCC--
T ss_conf             6997546-9975387101478877755999999999998669997665676614884377-67866588999987699--


Q ss_pred             CHHH
Q ss_conf             0244
Q gi|254780808|r  423 PYRM  426 (626)
Q Consensus       423 PYRM  426 (626)
                      +|++
T Consensus       382 ~~~~  385 (475)
T PRK06327        382 EYKA  385 (475)
T ss_pred             CEEE
T ss_conf             8899


No 263
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.34  E-value=0.025  Score=36.08  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             788988942689999999858998999980762
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      +|.|||||.||.-||++|...|..|.++|.---
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             479975636889999999866957999973887


No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.34  E-value=0.029  Score=35.63  Aligned_cols=92  Identities=17%  Similarity=0.275  Sum_probs=60.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      .|+|||||.-|+|.|..++++|++|.|+++.+. +     .+.+.                                   
T Consensus       150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~-~-----~~~~d-----------------------------------  188 (438)
T PRK13512        150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK-I-----NKLMD-----------------------------------  188 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC-C-----CCCCC-----------------------------------
T ss_conf             799989558999999999972990899993573-1-----20049-----------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             7855534678784999999999999708996898-001011202588113222035863344543334664310
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                                   .+ +++.+.+.++.+ +|++. ..+|+.+...     .+.+.+|..+.+..||+++|---+
T Consensus       189 -------------~~-~~~~~~~~l~~~-gv~~~~~~~v~~i~~~-----~v~~~~g~~~~~D~vi~a~G~~Pn  242 (438)
T PRK13512        189 -------------AD-MNQPILDELDKR-EIPYRLNEEIDAINGN-----EITFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             -------------HH-HHHHHHHHHHHC-CCEEEECCEEEEEECC-----EEEEEECCEEEECEEEEEEECCCC
T ss_conf             -------------99-999999999868-9999958779999797-----999932889740789996710027


No 265
>KOG0404 consensus
Probab=95.30  E-value=0.049  Score=33.96  Aligned_cols=115  Identities=23%  Similarity=0.395  Sum_probs=69.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             35788988942689999999858998999980762601246670022112248999--9986303999999886314887
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR--EIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~--Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      +-.|+|||-|-|+--||..+||.-+|-+|||-      .|.-+++-|    |||.-  |++-+-|.              
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG------~~~~~i~pG----GQLtTTT~veNfPGF--------------   63 (322)
T KOG0404           8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEG------MMANGIAPG----GQLTTTTDVENFPGF--------------   63 (322)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE------EECCCCCCC----CEEEEEECCCCCCCC--------------
T ss_conf             20389983580677789997650267568811------111686888----634565201348999--------------


Q ss_pred             HCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             30787855-534678784999999999999708996898001011202588113222035863344543334664310
Q gi|254780808|r   83 LNVKKGPA-VRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        83 ln~skGpA-v~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                            |- +-++ ..+||.      ++--+. -..+|+.+.|.++......-. +.| +.....+.++|++||.-..
T Consensus        64 ------Pdgi~G~-~l~d~m------rkqs~r-~Gt~i~tEtVskv~~sskpF~-l~t-d~~~v~~~avI~atGAsAk  125 (322)
T KOG0404          64 ------PDGITGP-ELMDKM------RKQSER-FGTEIITETVSKVDLSSKPFK-LWT-DARPVTADAVILATGASAK  125 (322)
T ss_pred             ------CCCCCCH-HHHHHH------HHHHHH-HCCEEEEEEHHHCCCCCCCEE-EEE-CCCCEEEEEEEEECCCCEE
T ss_conf             ------7545668-899999------988875-164654100222223689769-884-3772453069992163012


No 266
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982    Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=95.23  E-value=0.11  Score=31.61  Aligned_cols=88  Identities=15%  Similarity=0.378  Sum_probs=64.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             78898894268999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      +|+|||||=.=+|=|+.|++.+.+|.|+.=| |.|                                             
T Consensus       153 ~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRR-d~f---------------------------------------------  186 (321)
T TIGR01292       153 EVAVVGGGDSALEEALYLTRIAKKVTLVHRR-DKF---------------------------------------------  186 (321)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCEEEEEECC-CCC---------------------------------------------
T ss_conf             8999879824888889998538767999779-863---------------------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCC--CCEEE-HHHHCCCCCCC-CCEEEEEECCCC-----CCCCCCCCCCCC
Q ss_conf             78555346787849999999999997089--96898-00101120258-811322203586-----334454333466
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQE--NLDVI-QGEVAGFNTEK-NIISSIVMQDNS-----MIRCSTVVLTTG  155 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~p--ni~i~-~~eV~~l~~~~-~~~~~v~~~~g~-----~~~~~~viiatG  155 (626)
                              ||       ++.+.+++++.|  ||+++ ..+|.+|.-++ ..|.+|.+.+..     ++.+..|-++-|
T Consensus       187 --------RA-------~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG  249 (321)
T TIGR01292       187 --------RA-------EKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIG  249 (321)
T ss_pred             --------CC-------CHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEEC
T ss_conf             --------63-------2899989983789878996486899996178315533589962388488998444789841


No 267
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689   Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=95.23  E-value=0.03  Score=35.50  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC----CCEEEEEC--CHHH
Q ss_conf             57889889426899999998589----98999980--7626
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG----ASTALITH--KTST   40 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G----~~v~L~~~--~~~~   40 (626)
                      |||+|+|||++|.==|.++...-    .||.|+++  .|+.
T Consensus         1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l   41 (481)
T TIGR01989         1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKL   41 (481)
T ss_pred             CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHH
T ss_conf             92898888578999999973187320230678652348234


No 268
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.10  E-value=0.037  Score=34.88  Aligned_cols=19  Identities=26%  Similarity=0.506  Sum_probs=14.3

Q ss_pred             HHHHHHHCCCEEEEEEEEEC
Q ss_conf             67765403341566213304
Q gi|254780808|r  352 FPTLETKKISGLFLAGQING  371 (626)
Q Consensus       352 ~~tLe~k~~~~LffAGQI~G  371 (626)
                      ++++|+ .+||+|.||-++|
T Consensus       256 d~~~~T-s~~~VyA~GDva~  274 (277)
T pfam07992       256 DEYLRT-SVPGIYAAGDVAE  274 (277)
T ss_pred             CCCCEE-CCCCEEEEEECCC
T ss_conf             929740-9999999886889


No 269
>PTZ00318 NADH dehydrogenase; Provisional
Probab=95.08  E-value=0.064  Score=33.16  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r  104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus       104 s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g  160 (626)
                      +++..+.|+.. +|+|....|++...+     .+.+.+|..+.+..+|=|+|--.+.
T Consensus       236 s~~a~~~L~~~-GVeV~~~~vv~v~~~-----~v~~~~Ge~i~~~tvVWtAGV~a~p  286 (514)
T PTZ00318        236 RRWGKRRLDAL-GVRIVKGAVVAVTDK-----EVFTKSGEVLPTGLVVWSTGVGPSP  286 (514)
T ss_pred             HHHHHHHHHHC-CEEEEECCEEEEECC-----EEEECCCCEEECCEEEEECCCCCCC
T ss_conf             99999999878-949983628998689-----5896798199866899915887670


No 270
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.98  E-value=0.17  Score=30.07  Aligned_cols=132  Identities=20%  Similarity=0.206  Sum_probs=88.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHH-----------------CCCCCC--CCCCCCCCHHHHHH
Q ss_conf             9876357889889426899999998589-989999807626-----------------012466--70022112248999
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTST-----------------IGSMSC--NPAIGGLGKGHLVR   60 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~-----------------~ael~C--nps~gg~akg~L~~   60 (626)
                      ||++.||+|-||-|-+----|.++...+ .+++-+|.+|+=                 ++-||-  ||.=-=.= =.-.+
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySF-LNYL~   79 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSF-LNYLH   79 (436)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHH-HHHHH
T ss_conf             98764026887048327899987350257525787347888767875557864445005632553589983079-99998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHC---CCCCCCCCEEEE
Q ss_conf             99863039999998863148873078785553467878499999999999970899689800101---120258811322
Q gi|254780808|r   61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA---GFNTEKNIISSI  137 (626)
Q Consensus        61 Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~---~l~~~~~~~~~v  137 (626)
                      |=+.|              |+-||...=       . +=|..|..+.+-+-+.-|++..- ++|+   +++.+.....-+
T Consensus        80 ~h~RL--------------y~Fl~~e~f-------~-i~R~Ey~dY~~Waa~~l~~~rfg-~~V~~i~~~~~d~~~~~~~  136 (436)
T COG3486          80 EHGRL--------------YEFLNYETF-------H-IPRREYNDYCQWAASQLPSLRFG-EEVTDISSLDGDAVVRLFV  136 (436)
T ss_pred             HCCHH--------------HHHHHHHCC-------C-CCHHHHHHHHHHHHHHCCCCCCC-CEECCCCCCCCCCEEEEEE
T ss_conf             70657--------------655420023-------5-55888999999998408723368-7012210247763058999


Q ss_pred             EECCCCCCCCCCCCCCCCC
Q ss_conf             2035863344543334664
Q gi|254780808|r  138 VMQDNSMIRCSTVVLTTGT  156 (626)
Q Consensus       138 ~~~~g~~~~~~~viiatGt  156 (626)
                      .+.++..+.|+.+|+.+|+
T Consensus       137 ~t~~~~~y~ar~lVlg~G~  155 (436)
T COG3486         137 VTANGTVYRARNLVLGVGT  155 (436)
T ss_pred             ECCCCCEEEEEEEEECCCC
T ss_conf             8278847886037982599


No 271
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.90  E-value=0.22  Score=29.33  Aligned_cols=49  Identities=20%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             HHHHHHHHCCCEEEEEEEEECC-------CHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             5677654033415662133043-------3466666677899999874203345654
Q gi|254780808|r  351 LFPTLETKKISGLFLAGQINGT-------TGYEEAAAQGLVAGINSARKSNKLDCIC  400 (626)
Q Consensus       351 L~~tLe~k~~~~LffAGQI~Gt-------eGYeEAAAqGl~AGiNa~~~~~~~~p~~  400 (626)
                      .+++||++..||+|.+|-..-+       +|+ -|-.||-+++-|..+.++|+++-.
T Consensus       262 Vd~~lq~~~~~~VfAiGD~a~~~~~p~pk~g~-~A~~qa~~~a~Ni~~~l~g~~~~~  317 (364)
T TIGR03169       262 VDPTLQSLSHPHVFAAGDCAVITDAPRPKAGV-YAVRQAPILAANLRASLRGQPLRP  317 (364)
T ss_pred             ECCCCEECCCCCEEEECCEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             78873768999999971543688999997438-899999999999999966999999


No 272
>PRK09117 consensus
Probab=94.89  E-value=0.05  Score=33.90  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |.|||||.-|+-=|+.+|+.|.+|.|+..+++.+.
T Consensus         5 VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   39 (282)
T PRK09117          5 VGIIGAGTMGNGIAQACAVAGLDVVMVDISDAAVQ   39 (282)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             99989779999999999967996899989889999


No 273
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=94.79  E-value=0.051  Score=33.87  Aligned_cols=135  Identities=19%  Similarity=0.180  Sum_probs=71.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             635788988942689999999858998999980762601246670022112248-9999986303999999886314887
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGH-LVREIDALDGLMGRVADAAGIQFRV   82 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~-L~~Ei~aLgg~m~~~aD~~~i~~r~   82 (626)
                      |+  |.|||||.+|.-||-.+-+.|+.+.++|.+.          .|||+=.=. =..+     | ...+-+     .-.
T Consensus         2 Kr--VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~----------~iGG~W~~~~~~~~-----~-~~~~y~-----sl~   58 (532)
T pfam00743         2 KK--VAVIGAGVSGLSSIKCCLEEGLEPTCFERSD----------DIGGLWRFTEHVEE-----G-RASIYK-----SVV   58 (532)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC----------CCCCCCCCCCCCCC-----C-CCCCCC-----CEE
T ss_conf             87--9998972999999999987799829997799----------97350668888788-----8-676489-----706


Q ss_pred             HCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE--HHHHCCCCCCC----CCEEEEEEC-CCCCC-
Q ss_conf             307878---------55534678784999999999999708996898--00101120258----811322203-58633-
Q gi|254780808|r   83 LNVKKG---------PAVRGPRTQADRELYRLAMQREILSQENLDVI--QGEVAGFNTEK----NIISSIVMQ-DNSMI-  145 (626)
Q Consensus        83 ln~skG---------pAv~alraqvDR~~fs~~vt~~l~~~pni~i~--~~eV~~l~~~~----~~~~~v~~~-~g~~~-  145 (626)
                      +|.||.         |.-+.. - .-+..+.++++...+......-+  .-+|+++...+    ..-..|.+. +|... 
T Consensus        59 ~Ntsk~~~~fSDfP~P~~~p~-f-~~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~  136 (532)
T pfam00743        59 TNSSKEMSCFSDFPFPEDYPN-F-MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGKQES  136 (532)
T ss_pred             EECCCHHHCCCCCCCCCCCCC-C-CCHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEEECCEEEE
T ss_conf             858900513899989987889-9-89899999999999980996737657789999976676668618999985890889


Q ss_pred             -CCCCCCCCCCCCCHHHHH
Q ss_conf             -445433346643101344
Q gi|254780808|r  146 -RCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus       146 -~~~~viiatGtfl~g~~~  163 (626)
                       .-.+||+|||.+....+-
T Consensus       137 ~~fD~ViVctG~~~~P~iP  155 (532)
T pfam00743       137 AVFDAVMVCTGHHTNPHLP  155 (532)
T ss_pred             EEEEEEEEECCCCCCCCCC
T ss_conf             9977999946677868767


No 274
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.76  E-value=0.076  Score=32.62  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             98763578898894268999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|+-=.|.|||||.=|+-=|+.+|+.|++|.|+..+++.+
T Consensus         1 M~~~Ik~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~~~~l   41 (310)
T PRK06130          1 MDNPIQNLAIIGAGAMGSGIAALFASKGLDVVLIDPMPGAL   41 (310)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             98998889897877999999999985899889997999999


No 275
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=94.75  E-value=0.16  Score=30.37  Aligned_cols=104  Identities=21%  Similarity=0.316  Sum_probs=64.2

Q ss_pred             EEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCHHHCCC------CCC---------------------CCC
Q ss_conf             88988942-----------6899999998589989999807626012------466---------------------700
Q gi|254780808|r    8 VIVIGGGH-----------AGCEAAAVAAKLGASTALITHKTSTIGS------MSC---------------------NPA   49 (626)
Q Consensus         8 ViVIGaG~-----------AG~EAA~~~Ar~G~~v~L~~~~~~~~ae------l~C---------------------nps   49 (626)
                      |.|||+|.           +|+.|..++-..|+.|.|+..||.++.-      -++                     =|+
T Consensus        10 vLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~~E~Pd~il~~   89 (1068)
T PRK12815         10 ILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIRREKPDALLAT   89 (1068)
T ss_pred             EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             99989881531234465656999999999869989998898326208987444378858989999999997499989867


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH
Q ss_conf             2211224899999863039999998863148873078785553467878499999999999970899689800
Q gi|254780808|r   50 IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG  122 (626)
Q Consensus        50 ~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~  122 (626)
                      +||--.=.|-.|+..-|-+     ++.+|  ++|-+    -..+...--||++|.+.|.+.=...|.-.++..
T Consensus        90 ~GGqtaLnla~~L~~~GiL-----~k~~v--~llGt----~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s  151 (1068)
T PRK12815         90 LGGQTALNLAVKLLEAGIL-----EQYGV--ELLGT----NVEAIQKGEDRERFRALMKELGEPVPESEIVDS  151 (1068)
T ss_pred             CCCHHHHHHHHHHHHCCCH-----HHCCC--EEECC----CHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCC
T ss_conf             7784799999999975977-----86596--49679----999998645999999999976999997052199


No 276
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.72  E-value=0.024  Score=36.16  Aligned_cols=38  Identities=29%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             57889889426899999998589989999807626012
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      -.|-|||+|-||--||++|++.|+.|.+++..+.--|.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl  161 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL  161 (457)
T ss_pred             CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE
T ss_conf             67999888951555889998689879982666777447


No 277
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.59  E-value=0.13  Score=31.10  Aligned_cols=108  Identities=22%  Similarity=0.344  Sum_probs=66.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-------------CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             578898894268999999985899-------------8999980762601246670022112248999998630399999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGA-------------STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV   72 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~-------------~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~   72 (626)
                      -+|+|||||..|+|-|-.++.+-.             +|.|+|.-|                                  
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p----------------------------------  201 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP----------------------------------  201 (405)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC----------------------------------
T ss_conf             1899989882389999999999998765334786531899982571----------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCC-CCCCCCC
Q ss_conf             98863148873078785553467878499999999999970899689800-101120258811322203586-3344543
Q gi|254780808|r   73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNS-MIRCSTV  150 (626)
Q Consensus        73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~-~~~~~~v  150 (626)
                              |+|     |.        .-...+.++++.|++. +++|.-+ .|+++..+     +|.+..+. .+.+..+
T Consensus       202 --------~IL-----p~--------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tv  254 (405)
T COG1252         202 --------RIL-----PM--------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTV  254 (405)
T ss_pred             --------HHC-----CC--------CCHHHHHHHHHHHHHC-CCEEECCCCEEEECCC-----CEEECCCCEEEECCEE
T ss_conf             --------213-----58--------8889999999999987-9789869814897699-----1797558837762779


Q ss_pred             CCCCCCCCHHHHHH--HHCCCCCCCC
Q ss_conf             33466431013444--3202332224
Q gi|254780808|r  151 VLTTGTFLRGVIHI--GKLKIPAGRM  174 (626)
Q Consensus       151 iiatGtfl~g~~~~--g~~~~~~gr~  174 (626)
                      |-|+|.--+..+-.  +.+....||.
T Consensus       255 vWaaGv~a~~~~~~l~~~e~dr~Grl  280 (405)
T COG1252         255 VWAAGVRASPLLKDLSGLETDRRGRL  280 (405)
T ss_pred             EECCCCCCCHHHHHCCHHHHCCCCCE
T ss_conf             98577757866663270221348977


No 278
>PRK13748 putative mercuric reductase; Provisional
Probab=94.53  E-value=0.062  Score=33.25  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             HHHHHHHHHCCCEEEEEEEEECCCHHHH-HHHHHHHHHHHHHH
Q ss_conf             6567765403341566213304334666-66677899999874
Q gi|254780808|r  350 ELFPTLETKKISGLFLAGQINGTTGYEE-AAAQGLVAGINSAR  391 (626)
Q Consensus       350 ~L~~tLe~k~~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~~  391 (626)
                      ..+..||| .+|++|-+|-+||.--..- |+.||.+|+.|+.-
T Consensus       386 ~Vd~~~rT-s~p~IYA~GDv~g~~~Lah~A~~eG~~aa~ni~g  427 (561)
T PRK13748        386 VIDQGMRT-SVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG  427 (561)
T ss_pred             ECCCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             24887430-7862999610167875568999999999998619


No 279
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.50  E-value=0.033  Score=35.17  Aligned_cols=10  Identities=40%  Similarity=0.883  Sum_probs=4.4

Q ss_pred             CCEEEEEEEE
Q ss_conf             3415662133
Q gi|254780808|r  360 ISGLFLAGQI  369 (626)
Q Consensus       360 ~~~LffAGQI  369 (626)
                      +||+|.||--
T Consensus       479 vpGvFAAGD~  488 (520)
T COG3634         479 VPGVFAAGDC  488 (520)
T ss_pred             CCCEEECCCC
T ss_conf             8723533753


No 280
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=94.45  E-value=0.077  Score=32.58  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=32.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |-|||||.-|+-=|+.+|+.|.+|.|+..+++.+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   36 (180)
T pfam02737         2 VAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALE   36 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             89999788999999999967993999979989999


No 281
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967    This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=94.44  E-value=0.046  Score=34.17  Aligned_cols=43  Identities=28%  Similarity=0.394  Sum_probs=38.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             9876357889889426899999998589989999807626012
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      ||-+.-.|.|||+|==|+==|=-+|+.|+.|.||-.+++-++.
T Consensus         1 al~~~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r~eA~a~   43 (508)
T TIGR02279         1 ALINVVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIRAEALAR   43 (508)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf             9654106899646852103899998259848872288899999


No 282
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103   Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=94.43  E-value=0.054  Score=33.67  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |.|||+|+||.-+|..+...|..|.+||.|+
T Consensus         2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~   32 (474)
T TIGR02732         2 VAIVGAGLAGLATAVELVDAGHEVEIYESRS   32 (474)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             5787256778999999973897278852433


No 283
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.43  E-value=0.081  Score=32.42  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=32.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|||||.-|+-=|..+|+.|++|.|+..+++.+
T Consensus         5 V~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~~   38 (284)
T PRK07819          5 VGVVGAGQMGSGIAEVCARAGVDVLVFETTEEAA   38 (284)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             9998977899999999995799089997988999


No 284
>KOG1276 consensus
Probab=94.40  E-value=0.056  Score=33.60  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEE--EECCHHH
Q ss_conf             5788988942689999999858998999--9807626
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTAL--ITHKTST   40 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L--~~~~~~~   40 (626)
                      -+|.|+|||.+|--|||.+||++.++.+  +|-.+-.
T Consensus        12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276          12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             6699988853688999999854899559998427866


No 285
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.39  E-value=0.089  Score=32.15  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |-|||+|.-|+-=|..+|+.|++|.|+..+++.+.
T Consensus         5 VaViGaG~mG~giA~~~a~~G~~V~l~D~~~~~l~   39 (308)
T PRK06129          5 IAIVGAGLIGRAWAIVFARAGHRVRLWDADPAALA   39 (308)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             99977789999999999858993899989889999


No 286
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=94.31  E-value=0.11  Score=31.50  Aligned_cols=110  Identities=27%  Similarity=0.425  Sum_probs=67.8

Q ss_pred             EEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCHHHC------C----------CCCCC-----------CC
Q ss_conf             88988942-----------68999999985899899998076260------1----------24667-----------00
Q gi|254780808|r    8 VIVIGGGH-----------AGCEAAAVAAKLGASTALITHKTSTI------G----------SMSCN-----------PA   49 (626)
Q Consensus         8 ViVIGaG~-----------AG~EAA~~~Ar~G~~v~L~~~~~~~~------a----------el~Cn-----------ps   49 (626)
                      |.|||.|=           +||=|..+|=.-|..|.|+..||.|+      |          |-|=.           |.
T Consensus         9 vLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPDgiL~t   88 (1089)
T TIGR01369         9 VLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDGILPT   88 (1089)
T ss_pred             EEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCC
T ss_conf             99966673113120230247899999987649579997588472338866866002525458888666531686600025


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCEEEHHHHCCCC
Q ss_conf             2211224899999863039999998863148873078785553467878-499999999999970899689800101120
Q gi|254780808|r   50 IGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQA-DRELYRLAMQREILSQENLDVIQGEVAGFN  128 (626)
Q Consensus        50 ~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skGpAv~alraqv-DR~~fs~~vt~~l~~~pni~i~~~eV~~l~  128 (626)
                      |||==.=.|-=||+-.|-|     ++.+|  +||    |--+.|. .+. ||++|...|.+.=+..|-=.+++.+-..+.
T Consensus        89 ~GGQTALNlav~L~~~GVL-----~kYgV--~vL----GT~~eaI-~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~  156 (1089)
T TIGR01369        89 LGGQTALNLAVELEESGVL-----EKYGV--EVL----GTPVEAI-KKAEDRELFREAMKEIGEPVPKSEIVHSVEEALK  156 (1089)
T ss_pred             CCCHHHHHHHHHHHHCCCC-----HHHCC--EEE----CCCHHHH-HHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             7603577778866206851-----45291--785----2342435-2020279999999973899881100278899999


Q ss_pred             C
Q ss_conf             2
Q gi|254780808|r  129 T  129 (626)
Q Consensus       129 ~  129 (626)
                      .
T Consensus       157 ~  157 (1089)
T TIGR01369       157 A  157 (1089)
T ss_pred             H
T ss_conf             9


No 287
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.29  E-value=0.086  Score=32.27  Aligned_cols=37  Identities=30%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             9876357889889426899999998589989999807626
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      |++|   |-|||||.=|+==|...|..|..|.|+..+|+.
T Consensus         1 MIkk---VAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~peA   37 (489)
T PRK07531          1 MIMK---AACIGGGVIGGGWAARFLLNGWDVAVFDPHPEA   37 (489)
T ss_pred             CCCE---EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             9767---999871886899999999579969999488789


No 288
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.06  E-value=0.088  Score=32.18  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=31.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             57889889426899999998589989999807626
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      .+|+|||||-||.-||+++|++|.+|.++|-.+..
T Consensus        18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~   52 (350)
T PRK12770         18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEP   52 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             98999995588999999999789985999536969


No 289
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.78  E-value=0.096  Score=31.92  Aligned_cols=34  Identities=35%  Similarity=0.507  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             7889889426899999998589989999807626
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      .|.|||||-||--|+-.+.++|+.|.-+.-||+.
T Consensus       167 kVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~~  200 (510)
T PRK09424        167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV  200 (510)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf             2899746477799999996279789996587889


No 290
>PRK12831 putative oxidoreductase; Provisional
Probab=93.78  E-value=0.11  Score=31.62  Aligned_cols=38  Identities=32%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             6357889889426899999998589989999807626012
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      |+  |-|||+|-||--|||.||++|++|.+||..+.-=|.
T Consensus       141 kk--VAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~  178 (464)
T PRK12831        141 KK--VAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGV  178 (464)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCE
T ss_conf             98--999897689999999999769917998278888980


No 291
>PRK04965 nitric oxide reductase; Provisional
Probab=93.76  E-value=0.12  Score=31.15  Aligned_cols=97  Identities=19%  Similarity=0.308  Sum_probs=70.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK   87 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk   87 (626)
                      |+|||||+-|||+|..++++|.+|.|+++.+.-+..+                            .|             
T Consensus       144 vvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~----------------------------l~-------------  182 (378)
T PRK04965        144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL----------------------------MP-------------  182 (378)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----------------------------CC-------------
T ss_conf             9998983889999999996798899976667442211----------------------------78-------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             855534678784999999999999708996898001-0112025881132220358633445433346643101
Q gi|254780808|r   88 GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus        88 GpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g  160 (626)
                                   ...++.+++.++++ +|+++-++ |+++. ..+....|.+.+|..+.+..||+++|---+-
T Consensus       183 -------------~~~~~~l~~~l~~~-GV~~~~~~~v~~i~-~~~~~~~v~l~dG~~i~aD~Vv~a~Gv~Pnt  241 (378)
T PRK04965        183 -------------PEVSSRLQHRLTEM-GVHLLLKSQLQGLE-KTESGIRATLDDGRSIEVDAVIAAAGLRPNT  241 (378)
T ss_pred             -------------HHHHHHHHHHHHHC-CEEEEECCEEEEEE-ECCCEEEEEECCCCEEECCEEEECCCCCCCH
T ss_conf             -------------99999999999978-90999698899999-6599899998599799849999894775482


No 292
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=93.65  E-value=0.086  Score=32.26  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=28.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             57889889426899999998589989999807
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      -+|-|||+|-||--|||.++++ ..|.|||-.
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~   39 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD   39 (447)
T ss_pred             CCEEEECCCCHHHHHHHHHHCC-CCEEEEECC
T ss_conf             6168972562014457753235-524788606


No 293
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.38  E-value=0.17  Score=30.19  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             987635788988942689999999858998999980762601246
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      |.-|+  |.|||.|+-|.=-|..+|..|.+|.-+..+.+.+..|-
T Consensus         1 m~~kk--I~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~~kv~~l~   43 (415)
T PRK11064          1 MSFET--ISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN   43 (415)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             99887--99988687789999999968894899989999999997


No 294
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.26  E-value=0.18  Score=29.99  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=32.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |-|||+|.-|+-=|+.+|+.|++|.|+..+++.+.
T Consensus         6 VaViGaGtMG~gIA~~~a~aG~~V~l~D~~~~~l~   40 (503)
T PRK08268          6 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAA   40 (503)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             99979688999999999938990899979989999


No 295
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324   These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=93.15  E-value=0.14  Score=30.81  Aligned_cols=34  Identities=44%  Similarity=0.687  Sum_probs=31.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             3578898894268999999985899899998076
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +||.=|||||=-|.-||=.+|..|.||..-|-..
T Consensus         2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~   35 (478)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYR   35 (478)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             7630687067166899999987299089821567


No 296
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=93.14  E-value=0.11  Score=31.56  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             788988942689999999858998999980762
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      -|-|||||=||-=+|=.|+|.|++|..|-=.|+
T Consensus       145 rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~  177 (480)
T TIGR01318       145 RVAVIGAGPAGLACADILARAGVQVVVFDRHPE  177 (480)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             789977886025799987517855999747703


No 297
>KOG4405 consensus
Probab=92.89  E-value=0.11  Score=31.49  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---HHCCCCC
Q ss_conf             63578898894268999999985899899998076---2601246
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---STIGSMS   45 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---~~~ael~   45 (626)
                      .+|||||||-|+--+=-|.+++|.|.+|+-+..|+   ++.|-.+
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS   51 (547)
T KOG4405           7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS   51 (547)
T ss_pred             HHCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEE
T ss_conf             034389981798489999986003770586068655577640014


No 298
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.86  E-value=0.23  Score=29.20  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=27.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             889889426899999998589989999807626
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      |-|||+|.=|+==|...+..|.+|.|+..+++.
T Consensus        10 VaVIGaG~MG~giAa~~a~~G~~V~l~D~~~~a   42 (321)
T PRK07066         10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAPGA   42 (321)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             999888788899999999479859999698889


No 299
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278   These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason.    Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=92.75  E-value=0.1  Score=31.71  Aligned_cols=88  Identities=25%  Similarity=0.413  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEE-CCHHHHCCCCHHHHHHHHHHHCCCEEEE-EEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8899999987543400100110-0012110235456567765403341566-2133043346666667789999987420
Q gi|254780808|r  316 EEIQHQFIRTIPGLEKVNIIRP-GYAIEYDYINPKELFPTLETKKISGLFL-AGQINGTTGYEEAAAQGLVAGINSARKS  393 (626)
Q Consensus       316 ~~~Q~rv~r~IPGLEnAef~R~-Gy~ieyd~~~P~~L~~tLe~k~~~~Lff-AGQI~GteGYeEAAAqGl~AGiNa~~~~  393 (626)
                      ..+-..++-|+|.|...+++|= | .|==-+.|   =.|=+..-=+||||| +|=  ||=|+---=|+|.+=   |...+
T Consensus       313 e~v~~~~~emfP~l~r~r~~R~Wg-GivD~~pD---~SPIi~~tP~~nLylNcGW--g~GGFKAtPasG~~f---A~~lA  383 (407)
T TIGR01373       313 EHVLEAILEMFPILSRVRMLRSWG-GIVDVTPD---GSPIIGKTPVPNLYLNCGW--GTGGFKATPASGTVF---AHTLA  383 (407)
T ss_pred             HHHHHHHHHHCCHHHHHEEEECCC-CEEECCCC---CCCCCCCCCCCCCEEECCC--CCCCEEEECCHHHHH---HHHHC
T ss_conf             999999987502233101112158-87840578---8876778888864465324--578803146127899---99970


Q ss_pred             CCC-----CCCCCCCCCCHHHHHHHH
Q ss_conf             334-----565465321079999998
Q gi|254780808|r  394 NKL-----DCICFSRTDSYIGVMIDD  414 (626)
Q Consensus       394 ~~~-----~p~~l~R~eaYiGVlIDD  414 (626)
                      +++     .||.++|=++  |.||||
T Consensus       384 ~g~p~~~~apF~ldRF~~--G~lIDe  407 (407)
T TIGR01373       384 KGEPHDIAAPFTLDRFHS--GRLIDE  407 (407)
T ss_pred             CCCCCCCCCCCCCCCCCC--CCEECC
T ss_conf             798765578720000133--640039


No 300
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=92.73  E-value=0.19  Score=29.81  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC
Q ss_conf             889889426899999998589989999807626012466
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSC   46 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~C   46 (626)
                      |.|||.|+-|.-.|..+|+.|.+|.-+..+.+.+..+-.
T Consensus         3 I~ViGlGyVGl~~a~~la~~G~~V~g~D~d~~~v~~ln~   41 (185)
T pfam03721         3 IAVIGLGYVGLPTAVCLAEIGHDVVGVDINQSKIDKLNN   41 (185)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC
T ss_conf             999897874899999999489939999799899999862


No 301
>KOG2960 consensus
Probab=92.65  E-value=0.22  Score=29.40  Aligned_cols=118  Identities=22%  Similarity=0.361  Sum_probs=68.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf             3578898894268999999985--899899998076260124667002211224899999863039999998----8631
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAK--LGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD----AAGI   78 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD----~~~i   78 (626)
                      .-||+|||||-||--|||..++  -.++|.++|..        .+|-=|.---|||-.-|     .|.+-|+    +-++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S--------VaPGGGaWLGGQLFSAM-----vvRKPAhLFL~Eigv  142 (328)
T KOG2960          76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS--------VAPGGGAWLGGQLFSAM-----VVRKPAHLFLQEIGV  142 (328)
T ss_pred             CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEE--------ECCCCCCCCCCHHHHHH-----HHCCHHHHHHHHHCC
T ss_conf             04569987786654146663036998469999700--------36997434010154565-----424728888887389


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH-HCCCCCCCC-----CEEEEEECCCC
Q ss_conf             488730787855534678784999999999999708996898001-011202588-----11322203586
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE-VAGFNTEKN-----IISSIVMQDNS  143 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e-V~~l~~~~~-----~~~~v~~~~g~  143 (626)
                      .|    .-.|.-|    +--.-.+|...+-..+.+-||+.+.... |.||+..++     ++.||.|.+..
T Consensus       143 pY----edegdYV----VVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtL  205 (328)
T KOG2960         143 PY----EDEGDYV----VVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTL  205 (328)
T ss_pred             CC----CCCCCEE----EEEEHHHHHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCCCEEEEEEEEEEEE
T ss_conf             73----4678779----995078899999999862786000010113555003686773688789740177


No 302
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=92.42  E-value=0.2  Score=29.63  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=42.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf             8898894268999999985899899998076260124667-002211224899999863
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN-PAIGGLGKGHLVREIDAL   65 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn-ps~gg~akg~L~~Ei~aL   65 (626)
                      |-|||||-||--|||+|+++|.+|.+||..+.-=|.|.=- |.+.- -|..|-+||+.+
T Consensus       196 VAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRL-Pk~vld~EI~~i  253 (652)
T PRK12814        196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRL-PESVIDADIAPL  253 (652)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCC-CHHHHHHHHHHH
T ss_conf             9996837899999999997799069981588889867644863338-999999999999


No 303
>KOG1439 consensus
Probab=92.35  E-value=0.11  Score=31.60  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=32.7

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8763578898894268999999985899899998076
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+..|||||.|-|+--|=-+.++++-|-+|+.+--|+
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~   37 (440)
T KOG1439           1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRND   37 (440)
T ss_pred             CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCC
T ss_conf             9875149997377364100000257695899970788


No 304
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.29  E-value=0.28  Score=28.63  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=32.5

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             98763578898894268999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ||.|   |.|||+|==|+=-|..+++.|..|.|+. ++...
T Consensus         1 ~mmk---I~IiGaGAvG~~~a~~L~~aG~~V~lv~-r~~~~   37 (341)
T PRK08229          1 MMAR---ICVLGAGSIGCYLGGRLAAAGADVTLIG-RARIG   37 (341)
T ss_pred             CCCE---EEEECCCHHHHHHHHHHHHCCCCEEEEE-CHHHH
T ss_conf             9477---9998967999999999985899879995-67899


No 305
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.27  E-value=0.25  Score=28.97  Aligned_cols=89  Identities=11%  Similarity=0.072  Sum_probs=48.9

Q ss_pred             HHHHHHHHCCCCCCCCCCCCC-------CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999987420334565465321-------0799999988607877402442000122121157871366888787737883
Q gi|254780808|r  385 AGINSARKSNKLDCICFSRTD-------SYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIG  457 (626)
Q Consensus       385 AGiNa~~~~~~~~p~~l~R~e-------aYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~  457 (626)
                      +||-......|.+-...++++       .+|.=+++.++.+|-..|-.+=.-  --|+..-.|-++  |    ...-+|=
T Consensus       326 ~GIA~~~a~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~--l~ri~~~~~~~~--l----~~~DlVI  397 (715)
T PRK11730        326 GGIAYQSASKGVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGV--LSTITPTLDYAG--F----KDVDVVV  397 (715)
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHCCCCCCCCHH--H----CCCCEEE
T ss_conf             9999999957995799978999999999999999999986489987999999--956874154024--3----3588899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             899999999999999999987633
Q gi|254780808|r  458 ERRQKRFAKYIQEYNFLRSLLKSL  481 (626)
Q Consensus       458 ~~r~~~~~~k~~~~~~~~~~l~~~  481 (626)
                      +.-.+.+.-|++-+.++...+...
T Consensus       398 EAV~E~l~~K~~vf~~l~~~~~~~  421 (715)
T PRK11730        398 EAVVENPKVKAAVLAEVEQKVRED  421 (715)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             854365889999999998655875


No 306
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.14  E-value=0.32  Score=28.21  Aligned_cols=28  Identities=21%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             CEEEECCCHHHHHHHHHHHH----CCCCEEEEE
Q ss_conf             78898894268999999985----899899998
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAK----LGASTALIT   35 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar----~G~~v~L~~   35 (626)
                      .|++||||. |+=..+-+||    .|.+|..+-
T Consensus       100 ~vv~VgGGv-G~Ap~~piakalk~~Gn~v~~I~  131 (760)
T PRK12778        100 TVVCAGGGV-GVAPMLPIVQALKAAGNRVITVL  131 (760)
T ss_pred             EEEEEECCE-EHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             399995869-68987999999998699599998


No 307
>KOG2853 consensus
Probab=92.03  E-value=0.18  Score=30.00  Aligned_cols=49  Identities=27%  Similarity=0.451  Sum_probs=33.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH----HCCCCEEEEECCHHHCCCCCCCCCCCCC
Q ss_conf             6357889889426899999998----5899899998076260124667002211
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAA----KLGASTALITHKTSTIGSMSCNPAIGGL   53 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~A----r~G~~v~L~~~~~~~~ael~Cnps~gg~   53 (626)
                      ..-||+|||||..|+--|+.+-    +.|.+|..+|-+ |+.++-+--=|+||+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd-dtytqssT~lSvGGi  137 (509)
T KOG2853          85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD-DTYTQSSTMLSVGGI  137 (509)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCEEEEECCE
T ss_conf             43678998888652265899988764379439999626-752100114555444


No 308
>PRK10262 thioredoxin reductase; Provisional
Probab=91.99  E-value=0.18  Score=29.92  Aligned_cols=50  Identities=20%  Similarity=0.236  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHCCCEEEEEEEEECCCH--HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             5456567765403341566213304334--66666677899999874203345
Q gi|254780808|r  347 NPKELFPTLETKKISGLFLAGQINGTTG--YEEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       347 ~P~~L~~tLe~k~~~~LffAGQI~GteG--YeEAAAqGl~AGiNa~~~~~~~~  397 (626)
                      ++...+.+.+ -.+||+|.||-|++-.+  -.-|.+.|-+|+++|.+++.+..
T Consensus       267 d~~~~~~~~~-TsipGifAaGDv~~~~~~qv~~Avg~G~~Aa~~a~~yL~~~~  318 (321)
T PRK10262        267 QSGIHGNATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLA  318 (321)
T ss_pred             CCCCCCCCCC-CCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             8887678776-898998999947789887687807858999999999997541


No 309
>KOG0685 consensus
Probab=91.89  E-value=0.3  Score=28.36  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=24.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf             635788988942689999999858998-99998
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGAS-TALIT   35 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~   35 (626)
                      .+--|+|||||.||.-||-.+-..|.. ++++|
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE   52 (498)
T KOG0685          20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE   52 (498)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             796499989856779999999982896489997


No 310
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.65  E-value=0.35  Score=27.92  Aligned_cols=40  Identities=23%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHCCCC
Q ss_conf             9876357889889426899999998589-9899998076260124
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTSTIGSM   44 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~~ael   44 (626)
                      ||+    |+|||+|.=|+=+|+-+|+.| ..|.+..-.+++.+..
T Consensus         1 m~~----ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i   41 (389)
T COG1748           1 MMK----ILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARI   41 (389)
T ss_pred             CCC----EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf             972----89989866679999999857896299984888899998


No 311
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.61  E-value=0.35  Score=27.88  Aligned_cols=55  Identities=35%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CCCCCCCCCHHHHHHHHH
Q ss_conf             88988942689999999858998999980762601246-670022112248999998
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-CNPAIGGLGKGHLVREID   63 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~-Cnps~gg~akg~L~~Ei~   63 (626)
                      |-|||||-||-=|||+||++|+.|.+||..+.-=|.|. .-|.+. +-+-.|-+|++
T Consensus       140 VAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yR-LP~~vl~~ei~  195 (560)
T PRK12771        140 VAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYR-LPRDVLDAEIQ  195 (560)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCC-CCHHHHHHHHH
T ss_conf             999897789999999999769858996767888988835687544-75899999999


No 312
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=91.43  E-value=0.4  Score=27.55  Aligned_cols=47  Identities=21%  Similarity=0.290  Sum_probs=35.9

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCC---CCC
Q ss_conf             876357889889426899999998589--989999807626012466---700
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSC---NPA   49 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~C---nps   49 (626)
                      .+++|||++||||--|+--++-+++.-  .++.|+| |.+.+|+.+-   |||
T Consensus         1 ~~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~E-rl~~~A~eSS~~wNNA   52 (489)
T pfam06039         1 EHDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFE-RLDGVAQESSNPWNNA   52 (489)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHCCCCCCC
T ss_conf             996102999996288999999999759987489998-1475255507886655


No 313
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.30  E-value=0.37  Score=27.75  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=36.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCC
Q ss_conf             8898894268999999985899899998076260124667
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN   47 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cn   47 (626)
                      |.|||.|+=|.-.|..+|..|.+|.-+..+++.+..|-+.
T Consensus         3 I~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~~~i~~l~~g   42 (411)
T TIGR03026         3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKG   42 (411)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCC
T ss_conf             9998978779999999994899489998999999999779


No 314
>KOG3855 consensus
Probab=91.23  E-value=0.17  Score=30.18  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEHHHH-CC-------CCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             49999999999997089968980010-11-------20258811322203586334454333466
Q gi|254780808|r   99 DRELYRLAMQREILSQENLDVIQGEV-AG-------FNTEKNIISSIVMQDNSMIRCSTVVLTTG  155 (626)
Q Consensus        99 DR~~fs~~vt~~l~~~pni~i~~~eV-~~-------l~~~~~~~~~v~~~~g~~~~~~~viiatG  155 (626)
                      |--.+|-+.-......+||+|+..+- .+       +..+++...-+.+.+|..+.++-.|-+-|
T Consensus       150 ~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg  214 (481)
T KOG3855         150 DNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADG  214 (481)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEEECEEECCCC
T ss_conf             47799888877764147624311453232012345678998653789932684544100404545


No 315
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=91.09  E-value=0.37  Score=27.77  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             8898894268999999985899899998076260124
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      |.|||||-=|+=-|..+|+.|..|.|+..+++.+.++
T Consensus         3 I~IiGaG~wGtAla~~la~n~~~V~l~~r~~~~~~~i   39 (159)
T pfam01210         3 IAVLGAGSWGTALAKVLARNGHEVRLWGRDEELIEEI   39 (159)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
T ss_conf             9999969999999999998799899999043666778


No 316
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=91.08  E-value=0.68  Score=25.89  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             ECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8894268999999985899899998076260
Q gi|254780808|r   11 IGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus        11 IGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      +++..+|.+|+.++-..|..|.|+..+|.++
T Consensus        12 ~efdysG~qac~aLkeeg~~vvlvnsnpAti   42 (400)
T COG0458          12 AEFDYSGTQACKALKEEGYGVVLVNSNPATI   42 (400)
T ss_pred             EEECHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             1114367899999986697599972887212


No 317
>PRK11749 putative oxidoreductase; Provisional
Probab=91.00  E-value=0.36  Score=27.80  Aligned_cols=36  Identities=33%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             889889426899999998589989999807626012
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      |.|||||-||.-||+.||++|++|.+||..+.--|.
T Consensus       143 VAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGl  178 (460)
T PRK11749        143 VAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL  178 (460)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE
T ss_conf             999896789999999999769847997047878755


No 318
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.87  E-value=0.42  Score=27.36  Aligned_cols=45  Identities=27%  Similarity=0.403  Sum_probs=36.3

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH---CCCCCCCCC
Q ss_conf             9876357889889426899999998589989999807626---012466700
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTST---IGSMSCNPA   49 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~---~ael~Cnps   49 (626)
                      ||+    |.|||||-=|+=-|..+|+-|.+|.|+..+.+.   |-+--+||.
T Consensus         1 Mmk----I~ViGaGawGtAlA~~la~n~~~V~lw~r~~~~~~~In~~~~n~~   48 (325)
T PRK00094          1 MMK----IAVLGAGSWGTALAILLARNGHDVVLWGRDPEHAAEINTDRENPR   48 (325)
T ss_pred             CCE----EEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCC
T ss_conf             988----999898999999999999789978999838999999996498865


No 319
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.77  E-value=0.3  Score=28.40  Aligned_cols=39  Identities=23%  Similarity=0.148  Sum_probs=25.1

Q ss_pred             HHHHHHHC-----CCEEEEEEEEECCCHHHH-HHHHHHHHHHHHH
Q ss_conf             67765403-----341566213304334666-6667789999987
Q gi|254780808|r  352 FPTLETKK-----ISGLFLAGQINGTTGYEE-AAAQGLVAGINSA  390 (626)
Q Consensus       352 ~~tLe~k~-----~~~LffAGQI~GteGYeE-AAAqGl~AGiNa~  390 (626)
                      +..+||..     +|++|..|-++|.-=--- |.+||++|-=+.+
T Consensus       457 De~~rTnv~g~~~v~hIYAIGDV~G~~mLAHvAs~EGi~ave~I~  501 (673)
T PTZ00153        457 DDHLQVKMEDNEIYDHIFCIGDANGKQMLAHTASHQALKVIDFIE  501 (673)
T ss_pred             CCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             996375688886677879998568852568799986799999872


No 320
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.77  E-value=1.2  Score=24.20  Aligned_cols=85  Identities=25%  Similarity=0.384  Sum_probs=53.6

Q ss_pred             CCCCCCC-----EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9876357-----88988942-68999999985899899998076260124667002211224899999863039999998
Q gi|254780808|r    1 MINRSYD-----VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVAD   74 (626)
Q Consensus         1 m~~~~~d-----ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD   74 (626)
                      ||++-||     |+|-||+- =|-..|.++|+.|++|.+.-.+.+..-              .++.|+...|+..     
T Consensus         1 mm~~lf~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~--------------~~~~~l~~~g~~~-----   61 (278)
T PRK08277          1 MMNNLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE--------------AVVEEIKANGGEA-----   61 (278)
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--------------HHHHHHHHCCCEE-----
T ss_conf             940063889998999586748999999999987998999979889999--------------9999998459909-----


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             8631488730787855534678784999999999999708996898
Q gi|254780808|r   75 AAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        75 ~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                       ..+             .+= + .|.+.-.+.+.+.++.+-.|+++
T Consensus        62 -~~~-------------~~D-v-td~~~v~~~~~~~~~~~G~iDiL   91 (278)
T PRK08277         62 -IAL-------------KAD-V-LDKESLEQARQQILKDFGRCDIL   91 (278)
T ss_pred             -EEE-------------ECC-C-CCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             -999-------------824-8-99999999999999984998889


No 321
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.50  E-value=0.13  Score=30.91  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCC--CCHHHHHH------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf             000000001232--00147776------402457541443235642225532123356764334520130157877
Q gi|254780808|r  235 NRQIECGITRTN--LETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT  302 (626)
Q Consensus       235 ~~q~~~~~~~t~--~~~~~~~~------~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~  302 (626)
                      ..+++|+.+++.  ...+.++.      .+++.+++|.|         |||||++..|+++..+|.. ++|+|+..
T Consensus       188 ~dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feG---------C~pIE~~a~rg~~~lrfgp-~kPvGL~d  253 (434)
T PRK05335        188 ADYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEG---------CLPIEVMAERGRETLRFGP-MKPVGLED  253 (434)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCHHHHHHCCCCCEECCC-CCCCCCCC
T ss_conf             552238998799889998752002035665445766578---------8778877414765320267-65667778


No 322
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884   In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B.   In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein.   The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species .    The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=90.48  E-value=0.4  Score=27.52  Aligned_cols=421  Identities=21%  Similarity=0.231  Sum_probs=188.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEE----CCHHHCCCCCCCCCCCC------------CCHHHHHHHHHHHH
Q ss_conf             357889889426899999998589--9899998----07626012466700221------------12248999998630
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLG--ASTALIT----HKTSTIGSMSCNPAIGG------------LGKGHLVREIDALD   66 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~----~~~~~~ael~Cnps~gg------------~akg~L~~Ei~aLg   66 (626)
                      .-|++|||||=||--||.++|..+  ++|+|+.    ||-.+++-=--|-|+-+            .+=|-=.+|=|+..
T Consensus         3 ~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKVYPMRSHTVaAEGGsAAV~~D~DSld~H~~DTV~GGDWLC~QD~Ve   82 (585)
T TIGR01176         3 QADIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTKDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (585)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             32367883784468999999840898537898511577641111355311210564124541445345664322021899


Q ss_pred             HHHHHHHHHHHHHHHHHC--CCCCC----CC-----------CCHHHHHHHHHHHHH--HHHHHHCCCCCEEEHH-HHCC
Q ss_conf             399999988631488730--78785----55-----------346787849999999--9999970899689800-1011
Q gi|254780808|r   67 GLMGRVADAAGIQFRVLN--VKKGP----AV-----------RGPRTQADRELYRLA--MQREILSQENLDVIQG-EVAG  126 (626)
Q Consensus        67 g~m~~~aD~~~i~~r~ln--~skGp----Av-----------~alraqvDR~~fs~~--vt~~l~~~pni~i~~~-eV~~  126 (626)
                      -.+..+..+ -||.-.--  =|+=|    +|           |=  | +|+-.|.--  .-.++-..|.|.=..+ =|++
T Consensus        83 ~FV~~ap~E-~~QlE~WGCPWSRk~dG~V~VR~FGGMK~~RTWF--A-ADKTGFH~LHTLFQ~~l~y~~i~R~DE~F~~~  158 (585)
T TIGR01176        83 YFVAEAPKE-LVQLEHWGCPWSRKPDGRVNVRRFGGMKVERTWF--A-ADKTGFHLLHTLFQTSLKYPQIKRYDEYFVVD  158 (585)
T ss_pred             HHHHHCCHH-HHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEE--C-CCCCCHHHHHHHHHHHCCCCCCEEHHCEEEEE
T ss_conf             987413345-6643127888774789857762268812210010--1-12234268899998630563310001013555


Q ss_pred             CCCCCCCEEEEE-----ECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCCCC
Q ss_conf             202588113222-----0358633445433346643101344432023322247511133--100001011200544445
Q gi|254780808|r  127 FNTEKNIISSIV-----MQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNS--LFNSFMKFDFDTGRLKTG  199 (626)
Q Consensus       127 l~~~~~~~~~v~-----~~~g~~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~s~~--ls~~l~~~~~~~~r~ktg  199 (626)
                      |++|++.|.|..     +..-..+.|.+||+|||-              +||.......+  .+-+=+.+.     |..|
T Consensus       159 lLVDdG~v~GLvAi~~~~G~l~~I~A~aVvlaTGG--------------aGRVy~~~TN~~I~TGDGMa~A-----~~~G  219 (585)
T TIGR01176       159 LLVDDGRVRGLVAIELAEGRLVTIKADAVVLATGG--------------AGRVYRFNTNGGIVTGDGMALA-----FRHG  219 (585)
T ss_pred             EEEECCEEEEEEEEEECCCEEEEEEEEEEEEECCC--------------CCCCEEECCCCCCCCCCHHHHH-----HHCC
T ss_conf             57517735557888633670688874278993089--------------8730331058873126148999-----8478


Q ss_pred             CCCHHHHCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH--HCCCCCC--CCCCCCCCCCCC
Q ss_conf             44101100001344321147876687774--35657800000000123200147776--4024575--414432356422
Q gi|254780808|r  200 TPARLDGKTIIWDKTEKQFADERLIPFSF--MTDKITNRQIECGITRTNLETHRIIM--ENIKHSA--IYSGDIKSYGPR  273 (626)
Q Consensus       200 tppri~~~sidf~~~e~q~~d~~~~~~s~--~~~~~~~~q~~~~~~~t~~~~~~~~~--~~~~~~~--~~~g~~~~~gpr  273 (626)
                      .|= =|.+.+-|        -..-.||+=  +++-.  .  -.--.--|+.-.+-+.  ......|  .+--+-...|||
T Consensus       220 ~PL-~DMEFVQY--------HPTGLP~tGIL~TE~~--R--~EGG~l~NK~GYRYLQDY~~G~~TP~G~Pk~k~MELGPR  286 (585)
T TIGR01176       220 VPL-RDMEFVQY--------HPTGLPGTGILMTEGC--R--GEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPR  286 (585)
T ss_pred             CCC-CCCCCEEE--------CCCCCCCCCHHCCCCC--C--CCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             883-32430100--------6889886521000334--4--377667816874130005777888888875342046886


Q ss_pred             CCCC----CCCCCCCCCCCCCC-CCE--EEECCCCCCEEEECCCCCCCCHH-HHHHHHHHHHHHHHCCEEEECCHHHHCC
Q ss_conf             2553----21233567643345-201--30157877645434776668988-9999998754340010011000121102
Q gi|254780808|r  274 YCPS----IEDKIVRFGERNGH-QIF--LEPEGLNTDVVYPNGISTALPEE-IQHQFIRTIPGLEKVNIIRPGYAIEYDY  345 (626)
Q Consensus       274 ycPs----ie~k~~~~~~~p~h-~Vq--LrpE~~~~~~~n~vGFqTsL~~~-~Q~rv~r~IPGLEnAef~R~Gy~ieyd~  345 (626)
                      -=.|    =|..-=++=+.|+. ||+  ||.=|.+       =++.+||+= |=-+-...|-=..+-.=+||-  +||..
T Consensus       287 Dk~SQAF~HE~~KG~Ti~~P~GdVVyLDLRHLG~~-------~l~~~LPFi~ELak~Y~~vDPv~E~iPvRP~--vHY~M  357 (585)
T TIGR01176       287 DKVSQAFWHEHRKGNTIDTPYGDVVYLDLRHLGED-------LLDERLPFICELAKAYVHVDPVKEPIPVRPT--VHYTM  357 (585)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHH-------HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC--EEEEE
T ss_conf             53024457464178722589897788500442378-------8752073578998863266873245368860--24330


Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEEEECC----------CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             354565677654033415662133043----------3466666677899999874203345654653210799999988
Q gi|254780808|r  346 INPKELFPTLETKKISGLFLAGQINGT----------TGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDL  415 (626)
Q Consensus       346 ~~P~~L~~tLe~k~~~~LffAGQI~Gt----------eGYeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDL  415 (626)
                      = --.-+..=+|+ +||||.+|--.-|          ----|=-.=|-+||-.|+-++-.....--.-+.| |--=+   
T Consensus       358 G-Gi~Td~~c~T~-~~GLfA~GE~asV~l~GANRLGSNSLaEl~VFG~~AG~~A~~~AA~~~~~~rGp~~A-i~AQ~---  431 (585)
T TIGR01176       358 G-GIETDINCETR-IKGLFAVGECASVGLHGANRLGSNSLAELVVFGRLAGEKAAERAARAKKSNRGPESA-IRAQA---  431 (585)
T ss_pred             C-CEEECCCCCCC-CCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHH---
T ss_conf             6-54457876411-463344022013311353424300367899987766789999998623677787899-99999---


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             6078774024420001221211578713668887877378838------9999999999999999998763368832
Q gi|254780808|r  416 TSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGE------RRQKRFAKYIQEYNFLRSLLKSLVLTSK  486 (626)
Q Consensus       416 itkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~------~r~~~~~~k~~~~~~~~~~l~~~~~~p~  486 (626)
                               |---.|-+ +++-|+...++|...+--++|.-=+      ..-..+++-.+++..+.++.+...++-+
T Consensus       432 ---------~~~~~Rl~-~~~~~~G~GgE~~A~IR~~M~~t~E~~~GIYR~~~~~~~~i~~l~~L~ERf~~~~I~D~  498 (585)
T TIGR01176       432 ---------RTVELRLE-RLLSQEGQGGENWADIRAEMGATLESGCGIYRDEELLQKTIDKLAELQERFKRVGIDDK  498 (585)
T ss_pred             ---------HHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf             ---------99999999-99862588865166888999888985077446826799999999986542226656205


No 323
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=90.44  E-value=0.21  Score=29.45  Aligned_cols=44  Identities=27%  Similarity=0.480  Sum_probs=37.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC---CCCCCC
Q ss_conf             63578898894268999999985899899998076260---124667
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI---GSMSCN   47 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~---ael~Cn   47 (626)
                      +.-||+|||||.+|.+||-.+--+|..+.++..+.|++   .++-|+
T Consensus       167 ~~g~~~~~ggg~~g~~~~~~~~g~g~~~~~~d~n~d~l~~l~~~f~~  213 (372)
T TIGR00518       167 EPGDVTILGGGVVGTNAAKMAVGLGADVTILDLNVDRLRQLDDLFGG  213 (372)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             64526786076112102344313675156762354665554565312


No 324
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.23  E-value=0.45  Score=27.12  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             87635788988942689999999858998999980762
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      ++++  |.|+|.|-.|.-+|-.|.++|++|.++.-+..
T Consensus        16 l~~k--vlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~   51 (476)
T PRK00141         16 LRGR--VLVAGAGVSGLGIAKMLSELGCDVVVADDNET   51 (476)
T ss_pred             HCCC--EEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             6998--89992278899999999978997999989987


No 325
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=90.22  E-value=0.31  Score=28.26  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=16.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             88988942689999999858998999980
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITH   36 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~   36 (626)
                      |+|||+|..|++.|..+|+...+|.|.+-
T Consensus       186 VlVVG~GnSg~DIA~els~~a~~V~ls~R  214 (532)
T pfam00743       186 VLVIGLGNSGGDIAVELSRTAAQVFLSTR  214 (532)
T ss_pred             EEEECCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf             99978889841059999852786899970


No 326
>KOG1336 consensus
Probab=90.15  E-value=1.5  Score=23.41  Aligned_cols=30  Identities=20%  Similarity=0.458  Sum_probs=24.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             788988942689999999858998999980
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITH   36 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~   36 (626)
                      .|+|||||-+|+=|+-.+-..|....+.-+
T Consensus        76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~  105 (478)
T KOG1336          76 HFVIVGGGPGGAVAIETLRQVGFTERIALV  105 (478)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             499976882033557667752887660787


No 327
>KOG2415 consensus
Probab=89.97  E-value=0.38  Score=27.67  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=26.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHH------HHCCCCEEEEEC
Q ss_conf             635788988942689999999------858998999980
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVA------AKLGASTALITH   36 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~------Ar~G~~v~L~~~   36 (626)
                      ..|||+|||||-||--||..+      +..-++|.++|.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEK  113 (621)
T KOG2415          75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEK  113 (621)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             040589988881567888889988876078368999961


No 328
>KOG0399 consensus
Probab=89.81  E-value=0.48  Score=26.93  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=19.2

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0012320014777640245754144323564222553
Q gi|254780808|r  241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPS  277 (626)
Q Consensus       241 ~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPs  277 (626)
                      ...||.+....++.-.....-+..|-++-..|--|-|
T Consensus       542 afgYt~E~v~mll~pMa~~gkEalgsMGnDaplA~LS  578 (2142)
T KOG0399         542 AFGYTSEQVQMLLEPMAKQGKEALGSMGNDAPLACLS  578 (2142)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHC
T ss_conf             6167388899999988745875424567876100105


No 329
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.76  E-value=0.5  Score=26.85  Aligned_cols=79  Identities=11%  Similarity=-0.063  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             33456546532107999999886078774024420001221211578713668887877378838999999999999999
Q gi|254780808|r  394 NKLDCICFSRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNF  473 (626)
Q Consensus       394 ~~~~p~~l~R~eaYiGVlIDDLitkg~~EPYRMfTSRAEyRL~LR~DNAd~RLt~~g~~~GLv~~~r~~~~~~k~~~~~~  473 (626)
                      ...++-.+.|.-.+|.=++|.++.+|--.+--.=  ..=-||..-.|-.      --....+|=+.-.+.+.-|++-+.+
T Consensus       339 ~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~--~~l~~i~~~~~~~------~~~~~DlVIEAv~E~~~~K~~v~~~  410 (706)
T PRK11154        339 KDINPQGINHALKYSWDLLDKKVKRRHMTPAERD--KQMALISGTTDYR------GFKHADLVIEAVFEDLALKQQMVAD  410 (706)
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--HHHHCEEEECCHH------HHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             9799999999999889999999861899989999--9862241004412------3156887999714528889999999


Q ss_pred             HHHHHHH
Q ss_conf             9998763
Q gi|254780808|r  474 LRSLLKS  480 (626)
Q Consensus       474 ~~~~l~~  480 (626)
                      +-..+..
T Consensus       411 le~~~~~  417 (706)
T PRK11154        411 VEQNCAE  417 (706)
T ss_pred             HHHHCCC
T ss_conf             9964798


No 330
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.68  E-value=0.62  Score=26.18  Aligned_cols=38  Identities=16%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             88988942689999999858998999980762601246
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      |+|||||-=|..-|=+|+..|..|.+++.+++.+.++.
T Consensus         3 IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~   40 (455)
T PRK09496          3 IIILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQ   40 (455)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             99999888999999999868997999989999999988


No 331
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.34  E-value=0.67  Score=25.92  Aligned_cols=38  Identities=21%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCH
Q ss_conf             987-635788988942689999999858998--99998076
Q gi|254780808|r    1 MIN-RSYDVIVIGGGHAGCEAAAVAAKLGAS--TALITHKT   38 (626)
Q Consensus         1 m~~-~~~dViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~   38 (626)
                      ||+ |.-.|.|||+|+-|+-.|+.++..|.-  ..|+-.+.
T Consensus         1 ~m~~k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~   41 (315)
T PRK00066          1 MMKKKHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             98878984999997988999999998669988899980898


No 332
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.23  E-value=0.66  Score=25.98  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=34.9

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             9876357889889426899999998589989999807626012
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      |-.|+  |.|+|.|..|.-||-.+.+.|+.|..+..+++.+.+
T Consensus         1 ~~~Kk--vlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~~~~~~   41 (418)
T PRK00683          1 MGLQR--VVVLGLGVTGKSVARFLAQKGVYVIGVDNSLEALQS   41 (418)
T ss_pred             CCCCE--EEEEEECHHHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf             99866--999808887999999999782989998298145454


No 333
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.21  E-value=0.79  Score=25.41  Aligned_cols=39  Identities=33%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             98763578898894268999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |+-++  |-|||||.=|+==|..+|.-|+.|.|+..+++.+
T Consensus         1 ~~i~k--v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~   39 (307)
T COG1250           1 MEIKK--VAVIGAGVMGAGIAAVFALAGYDVVLKDISPEAL   39 (307)
T ss_pred             CCCCE--EEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             97407--9997246020999999973499569995898999


No 334
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.13  E-value=0.63  Score=26.12  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             889889426899999998589989999
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      |.|||+|==||.+|..||+.|+..+-+
T Consensus         2 V~IvG~GGLG~~~a~~La~aGvg~i~l   28 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKL   28 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             899876788999999999818973999


No 335
>KOG2304 consensus
Probab=89.05  E-value=0.51  Score=26.77  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=34.9

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             76357889889426899999998589989999807626012
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      ++.-.|.|||||+-||--|--+|..|..|.|+..+-+.+.+
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~   49 (298)
T KOG2304           9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSR   49 (298)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHH
T ss_conf             45662478756643203999988519946985477789999


No 336
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=89.02  E-value=0.37  Score=27.75  Aligned_cols=95  Identities=21%  Similarity=0.392  Sum_probs=70.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88988942689999999858998999980762601246670022112248999998630399999988631488730787
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVKK   87 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~sk   87 (626)
                      ++|||||-=|.|.|=..||+|++|.|+.-.- .                +|.+                           
T Consensus       184 L~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~-~----------------ll~~---------------------------  219 (494)
T TIGR02053       184 LVVIGGGAIGVELAQAFARLGSEVTILQRSE-R----------------LLPR---------------------------  219 (494)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEHHHHHH-H----------------HCCC---------------------------
T ss_conf             8888652899999999985776140367998-6----------------4464---------------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH--HCCCCCCC-CCEEE-EEE-CCCCCCCCCCCCCCCCCC
Q ss_conf             855534678784999999999999708996898001--01120258-81132-220-358633445433346643
Q gi|254780808|r   88 GPAVRGPRTQADRELYRLAMQREILSQENLDVIQGE--VAGFNTEK-NIISS-IVM-QDNSMIRCSTVVLTTGTF  157 (626)
Q Consensus        88 GpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~e--V~~l~~~~-~~~~~-v~~-~~g~~~~~~~viiatGtf  157 (626)
                          |-+-+       |..|++.|.+...|+|+..-  +.++...+ +.... +.. .....+.+....+|||=-
T Consensus       220 ----~epei-------s~~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~  283 (494)
T TIGR02053       220 ----EEPEI-------SAAVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRR  283 (494)
T ss_pred             ----CCHHH-------HHHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCC
T ss_conf             ----68889-------99999984147877998044035544452798189998558987457431125552787


No 337
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.98  E-value=0.6  Score=26.26  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             889889426899999998589989999807626
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      |.|||+|-.|+..|-++++.|.+|.|+--.|..
T Consensus       178 V~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         178 VLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             999898703999999997306717898517975


No 338
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.79  E-value=0.83  Score=25.26  Aligned_cols=39  Identities=23%  Similarity=0.288  Sum_probs=33.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             987635788988942689999999858998999980762601
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |..|   |.|||+|==||=-|+.|++.|..|.|+...+.++.
T Consensus         1 m~Mk---I~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~~~~~   39 (305)
T PRK05708          1 MSMT---WHILGAGSLGSLWACRLARAGLPVRLILRDRQRLA   39 (305)
T ss_pred             CCCE---EEEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             9988---99988239999999999848997399994789999


No 339
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.41  E-value=0.73  Score=25.66  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=24.9

Q ss_pred             HHHHCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             65403341566213-3043346666667789999987420
Q gi|254780808|r  355 LETKKISGLFLAGQ-INGTTGYEEAAAQGLVAGINSARKS  393 (626)
Q Consensus       355 Le~k~~~~LffAGQ-I~GteGYeEAAAqGl~AGiNa~~~~  393 (626)
                      ++| .+|++|.||- ++|-.=-++|.+.|-.|+....+++
T Consensus       613 ~~T-s~pgVFAgGD~v~G~stVV~Ai~~Gr~AA~aId~yL  651 (654)
T PRK12769        613 YQT-SNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWL  651 (654)
T ss_pred             CCC-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             448-999989807856682899999999999999999986


No 340
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=88.17  E-value=0.81  Score=25.32  Aligned_cols=29  Identities=34%  Similarity=0.589  Sum_probs=24.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCE-EEEEC
Q ss_conf             889889426899999998589989-99980
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAST-ALITH   36 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v-~L~~~   36 (626)
                      |.|||+|=-|||.|..||++|+.. .|+-.
T Consensus         4 VlivG~GglG~~~~~~La~~Gvg~i~lvD~   33 (134)
T pfam00899         4 VLVVGAGGLGSPAAEYLARAGVGKLTLVDF   33 (134)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             999898889999999999938974999989


No 341
>KOG2665 consensus
Probab=87.67  E-value=0.55  Score=26.50  Aligned_cols=114  Identities=21%  Similarity=0.293  Sum_probs=58.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCCC---CCC--CHHHHHHHHHHHHH-HHHHHHH
Q ss_conf             7635788988942689999999858--99899998076260124667002---211--22489999986303-9999998
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIGSMSCNPAI---GGL--GKGHLVREIDALDG-LMGRVAD   74 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~ael~Cnps~---gg~--akg~L~~Ei~aLgg-~m~~~aD   74 (626)
                      ..+||.+|||||--|+-.|-++.=+  +.+|.++|--.+---..+--||=   -|+  -.|-|+.-+=.=|- +.-.-.|
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~  125 (453)
T KOG2665          46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD  125 (453)
T ss_pred             CCCCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEEEEEEEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf             56554799888432225567776317872577540001021551256665056434417766000110342999999852


Q ss_pred             HHHHHHHHHCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
Q ss_conf             863148873078785---5534678784999999999999708996898001
Q gi|254780808|r   75 AAGIQFRVLNVKKGP---AVRGPRTQADRELYRLAMQREILSQENLDVIQGE  123 (626)
Q Consensus        75 ~~~i~~r~ln~skGp---Av~alraqvDR~~fs~~vt~~l~~~pni~i~~~e  123 (626)
                      +-.|.|+-    -|-   |+..--..-=..+|++..++   .-|.|..++++
T Consensus       126 e~~IpyKk----~GKLIVAt~~~EiprLd~L~~~g~qN---~v~glrmieg~  170 (453)
T KOG2665         126 EKKIPYKK----TGKLIVATESEEIPRLDALMHRGTQN---GVPGLRMIEGS  170 (453)
T ss_pred             HCCCCHHH----CCEEEEEECHHHCCHHHHHHHHHHHC---CCCCEEEECCC
T ss_conf             40797345----06389971721150389999765225---99970653121


No 342
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.61  E-value=1.2  Score=24.06  Aligned_cols=46  Identities=20%  Similarity=0.277  Sum_probs=35.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCC---CCC
Q ss_conf             76357889889426899999998589--989999807626012466---700
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSC---NPA   49 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~C---nps   49 (626)
                      +++|||++||||--|+--|+-+++.-  .++.|+| +.+.+|+.|-   |||
T Consensus         4 ~~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~E-rl~~~A~ESS~~wNNA   54 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVE-RLDSPAIESSNERNNA   54 (497)
T ss_pred             CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHCCCCCCCC
T ss_conf             77778899895288999999999769987489998-1475454407886655


No 343
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.53  E-value=0.98  Score=24.73  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=27.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             578898894268999999985899899998076260
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      -.|.|||+|=-||.+|..||+.|+...-+- +.|.+
T Consensus        33 s~VlivG~GGlG~~~~~~La~aGvg~i~lv-D~D~v   67 (245)
T PRK05690         33 ARVLVVGLGGLGCAAAQYLAAAGVGTLTLV-DFDTV   67 (245)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCCC
T ss_conf             978998777778999999998599659999-68867


No 344
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=87.49  E-value=0.51  Score=26.75  Aligned_cols=10  Identities=40%  Similarity=0.919  Sum_probs=3.5

Q ss_pred             CCEEEEEEEE
Q ss_conf             3415662133
Q gi|254780808|r  360 ISGLFLAGQI  369 (626)
Q Consensus       360 ~~~LffAGQI  369 (626)
                      +||||.||-+
T Consensus       503 I~GLYAAGE~  512 (549)
T PRK12834        503 LPGLYAAGEA  512 (549)
T ss_pred             ECCEEECCCC
T ss_conf             3880746022


No 345
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.41  E-value=0.99  Score=24.73  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=25.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEE-EEEC
Q ss_conf             578898894268999999985899899-9980
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTA-LITH   36 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~   36 (626)
                      -.|.|||+|==||.+|..||+.|+... |+..
T Consensus        28 s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~   59 (209)
T PRK08644         28 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDF   59 (209)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             96899888788999999999938981899889


No 346
>pfam07350 DUF1479 Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.
Probab=87.35  E-value=1.5  Score=23.38  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEE-ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9999999999708996898001011202588113222-0358633445433346643101344
Q gi|254780808|r  102 LYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIV-MQDNSMIRCSTVVLTTGTFLRGVIH  163 (626)
Q Consensus       102 ~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~-~~~g~~~~~~~viiatGtfl~g~~~  163 (626)
                      .+.+.+.+.|+.++       .+.+++.++..+.++- +....+..+..-++++--||+.+-|
T Consensus        90 ~w~~el~~Yi~~N~-------~f~~~~~~~pqiy~lYWS~aQv~AR~hp~m~~~q~fLn~LW~  145 (408)
T pfam07350        90 AWKQEIVDYLEANP-------DFKGFPPDKPQIYELYWSKAQVEARQHPNMLATQRFLNSLWH  145 (408)
T ss_pred             HHHHHHHHHHHCCC-------CCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             99999999997097-------667899999737873068889876329889999999986441


No 347
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=87.33  E-value=0.93  Score=24.92  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             88988942689999999858998999980762601246
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      |+|||.|--|..-|-.+.+.| +|.+++.+++.+-++.
T Consensus         1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~   37 (115)
T pfam02254         1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELR   37 (115)
T ss_pred             CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHH
T ss_conf             999878889999999998089-9999999879987788


No 348
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.95  E-value=1.2  Score=24.20  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=30.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +++  |.|||||..+..=+-.+.+.|+.|.++....
T Consensus        10 gk~--vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~~   43 (202)
T PRK06718         10 NKR--VVIVGGGKVAGRRAITLLKYGAHITVISPEI   43 (202)
T ss_pred             CCE--EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             986--9998898999999999986899699986999


No 349
>PTZ00325 malate dehydrogenase; Provisional
Probab=86.87  E-value=1  Score=24.69  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=25.1

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             889889-426899999998589989999807
Q gi|254780808|r    8 VIVIGG-GHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         8 ViVIGa-G~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      |.|||| |+=|+-.|+.++..|+-..|+=.+
T Consensus         4 V~IIGA~G~VG~s~A~~l~~~~~~~elvL~D   34 (313)
T PTZ00325          4 VAVLGAAGGIGQPLSLLLKRNPYVSTLSLYD   34 (313)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9998999869999999998389977799980


No 350
>PTZ00188 adrenodoxin reductase; Provisional
Probab=86.86  E-value=1.1  Score=24.52  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCH
Q ss_conf             63578898894268999999985-899899998076
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAK-LGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar-~G~~v~L~~~~~   38 (626)
                      +.|-|-|||+|-||+=||.+|-+ -+++|.+||--|
T Consensus        38 rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP   73 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             765799988883899999999638997798882689


No 351
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.81  E-value=1.1  Score=24.30  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |.|+|.|-.|.-||-.|.++|++|.++..+.
T Consensus        10 vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~   40 (501)
T PRK02006         10 VLVLGLGESGLAMARWCARHGCRLRVADTRE   40 (501)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9998336889999999997898499998999


No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.78  E-value=1  Score=24.64  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             7635788988942689999999858998999980762
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      +|+  |.|+|.|-.|.-||-.|.++|++|.++.-+.+
T Consensus        14 gk~--v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~   48 (481)
T PRK01438         14 GLR--VVVAGLGVSGFPAADALHELGASVTVVADGDD   48 (481)
T ss_pred             CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             998--99995758899999999967998999979987


No 353
>KOG2755 consensus
Probab=86.73  E-value=0.64  Score=26.06  Aligned_cols=31  Identities=42%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             EEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Q ss_conf             8898894268999999985--899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAK--LGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~   38 (626)
                      -+|||||.||.-+|-|+|.  ....++|+|-.+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755           2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCH
T ss_conf             599857614325899997538887389996417


No 354
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.66  E-value=1.5  Score=23.36  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             987635788988942689999999858998999980
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH   36 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~   36 (626)
                      |-+++=.|.|||+|==||=-|+.|++.|..|.|+.-
T Consensus         1 M~~~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r   36 (313)
T PRK06249          1 MDSETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLR   36 (313)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             999988899999149999999999966995699967


No 355
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.49  E-value=1.2  Score=24.15  Aligned_cols=28  Identities=29%  Similarity=0.512  Sum_probs=24.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7889889426899999998589989999
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      -|.|||+|==||.+|..||+.|+..+-+
T Consensus        26 ~VlIVGaGGLGs~~a~~La~aGVG~l~i   53 (337)
T PRK12475         26 HVLIIGAGALGAANAEALVRAGIGKLTI   53 (337)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             6999977777899999999828986999


No 356
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of  a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.42  E-value=1.3  Score=23.91  Aligned_cols=29  Identities=31%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             57889889426899999998589989999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      --|.|||+|=-||.+|..||+.|+..+-+
T Consensus        22 s~VlivG~GGlGs~~~~~La~~Gvg~i~l   50 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGL   50 (228)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             97899887788999999999839975899


No 357
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.23  E-value=1.1  Score=24.42  Aligned_cols=38  Identities=18%  Similarity=0.280  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             6357889889426899999998589989999807626012
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      |+  |.|+|.|-.|.-||-.+.++|.+|..+..+++...+
T Consensus        10 k~--v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~   47 (457)
T PRK01390         10 KT--VALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAK   47 (457)
T ss_pred             CE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf             98--999943699999999999789979999399206689


No 358
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.17  E-value=2.6  Score=21.70  Aligned_cols=94  Identities=11%  Similarity=-0.021  Sum_probs=51.5

Q ss_pred             CCCCCCCEEEECCC---HHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894---268999999985899899998076260124667002211224899999863039999998863
Q gi|254780808|r    1 MINRSYDVIVIGGG---HAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAG   77 (626)
Q Consensus         1 m~~~~~dViVIGaG---~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~   77 (626)
                      |++|.  ++|-||.   -=|-+.|..+|+.|++|.+.-.+.+..++-.+...-.   .-.+.+|+.+.|+..        
T Consensus         3 L~gKv--alVTGasr~~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~--------   69 (257)
T PRK12748          3 LMKKI--AIVTGASRLNGIGAAICRVLAQKGIDIFFTYWSQYDKAMPWGMHDKE---PFLLKEEIESYGVRC--------   69 (257)
T ss_pred             CCCCE--EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHH---HHHHHHHHHHCCCEE--------
T ss_conf             99988--99928899985499999999987999999707525544342346067---999999999659828--------


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             1488730787855534678784999999999999708996898
Q gi|254780808|r   78 IQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        78 i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                                 -++.+- . .|.+.-...+...++....|++.
T Consensus        70 -----------~~~~~D-v-s~~~~~~~~~~~~~~~~G~iDiL   99 (257)
T PRK12748         70 -----------EMLEID-L-SQSYSPNRLFYMVSERLGDPSIL   99 (257)
T ss_pred             -----------EEEECC-C-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             -----------999846-8-99999999999999974999899


No 359
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=86.09  E-value=1.4  Score=23.75  Aligned_cols=45  Identities=29%  Similarity=0.439  Sum_probs=37.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC---CCC-CCCC
Q ss_conf             88988942689999999858998999980762601246---670-0221
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS---CNP-AIGG   52 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~---Cnp-s~gg   52 (626)
                      |.|||||-=|+==|..+|+-|..|.|+-.+++.+.++-   +|+ -++|
T Consensus         4 I~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~   52 (329)
T COG0240           4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPG   52 (329)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCC
T ss_conf             8998178379999999996698469996289999999734767010599


No 360
>PRK08328 hypothetical protein; Provisional
Probab=86.07  E-value=1.4  Score=23.64  Aligned_cols=30  Identities=37%  Similarity=0.417  Sum_probs=25.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEE-EEE
Q ss_conf             578898894268999999985899899-998
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTA-LIT   35 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~   35 (626)
                      -.|.|||+|==||.+|..+|+.|+... |+-
T Consensus        28 s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD   58 (230)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGTVLLID   58 (230)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9789988787899999999984898689874


No 361
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=85.82  E-value=1.7  Score=22.97  Aligned_cols=32  Identities=38%  Similarity=0.604  Sum_probs=23.0

Q ss_pred             CCCCCCCEEEECC-----------------CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9876357889889-----------------4268999999985899899998
Q gi|254780808|r    1 MINRSYDVIVIGG-----------------GHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         1 m~~~~~dViVIGa-----------------G~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      ||+|   |+|||-                 |=++.-.|.++||+|.+|.++.
T Consensus         1 mm~k---i~~iGe~~~d~~~~~~~~~~~~pGG~~~N~A~~larLG~~~~~vg   49 (304)
T PRK09434          1 MMNK---VWVLGDAVVDLIPEGQNRYLKCPGGAPANVAVGVARLGGESGFIG   49 (304)
T ss_pred             CCCC---EEEECCCEEEEEECCCCCEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             9984---999815499986668896604668779999999998699879999


No 362
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=85.65  E-value=0.5  Score=26.80  Aligned_cols=100  Identities=12%  Similarity=0.042  Sum_probs=67.9

Q ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             20233222475111331000010112005444454410110000134432114787668777435657800000000123
Q gi|254780808|r  166 KLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRT  245 (626)
Q Consensus       166 ~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~~~~~~~t  245 (626)
                      .+.+++.++.+.+|+..+..+....|+.|--.+-+||....++-+|...-.....-++..|+-.+..++         +-
T Consensus       155 yFyDAaaPIVe~dS~d~~k~f~~SRYdKGeaaYlNCp~teEey~~F~eaL~~AE~vplKdFdrEka~fF---------EG  225 (444)
T TIGR00137       155 YFYDAAAPIVEKDSVDKEKAFLASRYDKGEAAYLNCPLTEEEYKKFYEALLEAEKVPLKDFDREKAVFF---------EG  225 (444)
T ss_pred             HHHHHCCCEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE---------CC
T ss_conf             455300540000004522110102357765553267777456778999998734788987744221332---------28


Q ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2001477764024575414432356422255
Q gi|254780808|r  246 NLETHRIIMENIKHSAIYSGDIKSYGPRYCP  276 (626)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~~gprycP  276 (626)
                      |-+.+++... +.....| |.++.+|.-.+.
T Consensus       226 ClPIEemA~R-G~kTmlf-GPmKPVGL~dpr  254 (444)
T TIGR00137       226 CLPIEEMAKR-GKKTMLF-GPMKPVGLVDPR  254 (444)
T ss_pred             CCCHHHHHHC-CHHHCCC-CCCCCCCCCCCC
T ss_conf             8778999624-3223025-888864665675


No 363
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.49  E-value=1.4  Score=23.65  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=24.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             788988942689999999858998999
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTAL   33 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L   33 (626)
                      .|.|||+|==||.+|..||++|+..+-
T Consensus        26 ~VlVvGaGGLGs~~a~~La~aGVG~i~   52 (339)
T PRK07688         26 HVLIIGAGALGTANAEMLVRAGVGKVT   52 (339)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf             789987777779999999984898299


No 364
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.43  E-value=1.6  Score=23.22  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=28.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             57889889426899999998589989999807
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      ..+.||||-.=-.|-+-.+++.|.+|.++-..
T Consensus         3 ~~iaviGGD~Rq~~l~~~L~~~g~~V~~~gf~   34 (296)
T PRK08306          3 MHIAVIGGDARQLELIRKLVELGAKVSLVGFD   34 (296)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             48999787589999999999779979998357


No 365
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.40  E-value=1.6  Score=23.25  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=34.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             889889426899999998589989999807626012
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      ++|||+|--|..-|-.+++.|..|.+++.+++.+.+
T Consensus         3 iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~   38 (225)
T COG0569           3 IIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEE   38 (225)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             999898578899999998789908999768899998


No 366
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.09  E-value=1.5  Score=23.39  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=36.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCCCCCC
Q ss_conf             63578898894268999999985899899998076-260124667002
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPAI   50 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~Cnps~   50 (626)
                      ++..|.|||||-.+..=+-.+-+.|+.|.++.... +.+-+|.....+
T Consensus        23 ~klkvLVVGGG~VA~RKi~~Ll~agA~VtVVSP~~~~el~~L~~~~~I   70 (222)
T PRK05562         23 NKIKVLVIGGGKAAFIKGKTFLKKGCYVEILSKEFSKEFLDLKKYGNL   70 (222)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCE
T ss_conf             676699999879999999999878998999878668899999975986


No 367
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.98  E-value=1.7  Score=23.09  Aligned_cols=32  Identities=13%  Similarity=0.290  Sum_probs=25.5

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             876357889889426899999998589989999807
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      |.|   |.|||+|+-|+-+|+.++..|+. .|+=.+
T Consensus         1 M~K---V~IIGaG~VG~~~A~~l~~~~~~-eivLiD   32 (313)
T PTZ00117          1 MKK---ISIIGSGQIGAIVGLLLLQENLG-DVYLYD   32 (313)
T ss_pred             CCE---EEEECCCHHHHHHHHHHHHCCCC-EEEEEE
T ss_conf             978---99989798999999999708998-799995


No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.97  E-value=2.1  Score=22.44  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             88988942689999999858998999980762
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTS   39 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~   39 (626)
                      |.|||+|==||=-|+.+++.|..|.|+...+.
T Consensus         3 I~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~   34 (307)
T PRK06522          3 IAILGAGAIGGLFGARLAQAGHDVTLVARGAT   34 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf             99999149999999999848998899978888


No 369
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.82  E-value=1.9  Score=22.73  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHCCCCEEEEE----CCHHHC
Q ss_conf             8999999985899899998----076260
Q gi|254780808|r   17 GCEAAAVAAKLGASTALIT----HKTSTI   41 (626)
Q Consensus        17 G~EAA~~~Ar~G~~v~L~~----~~~~~~   41 (626)
                      ..|.--.+|+.|+-.+|++    ++++++
T Consensus        53 ~~~~i~~laelGVv~LLF~iGLE~sl~~L   81 (558)
T PRK10669         53 DTKLAPELAELGVILLMFGVGLHFSLKDL   81 (558)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             87899999999799999987866899999


No 370
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566   This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=84.49  E-value=0.77  Score=25.49  Aligned_cols=39  Identities=13%  Similarity=0.066  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCEEEEC--CCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf             676433452013015--787764543477666898899999
Q gi|254780808|r  284 RFGERNGHQIFLEPE--GLNTDVVYPNGISTALPEEIQHQF  322 (626)
Q Consensus       284 ~~~~~p~h~VqLrpE--~~~~~~~n~vGFqTsL~~~~Q~rv  322 (626)
                      +||++..=..+|-++  +..+=..|+||=-||-=+|+...+
T Consensus       208 ~fph~E~~~~~~~~~~P~vksI~~Ninp~ktnvIFG~~t~~  248 (434)
T TIGR00479       208 KFPHKEELVLELQERYPDVKSIVQNINPEKTNVIFGEETEV  248 (434)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEECCCCEEE
T ss_conf             38533689999985188446088603789874220771168


No 371
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.15  E-value=1.6  Score=23.20  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|||+|==|||+|..+++.|+...- =.++|.+
T Consensus         2 VlivG~GglG~~va~~L~~~Gv~~i~-ivD~D~v   34 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKIT-LIDFDTV   34 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEE-EEECCCC
T ss_conf             99999798999999999993797199-9978987


No 372
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.00  E-value=1.9  Score=22.68  Aligned_cols=32  Identities=34%  Similarity=0.419  Sum_probs=26.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCE-EEEECC
Q ss_conf             57889889426899999998589989-999807
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGAST-ALITHK   37 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v-~L~~~~   37 (626)
                      -.|.|||.|==||.+|.+|||.|+.. .|+.+.
T Consensus        12 s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D   44 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             978998886368999999998099759997199


No 373
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=83.65  E-value=2.1  Score=22.35  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=26.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|||+|==|||.+..+|.+|+...-+ .+.|++
T Consensus         2 VlvvGaGglGce~~k~La~~Gvg~i~i-iD~D~I   34 (234)
T cd01484           2 VLLVGAGGIGCELLKNLALMGFGQIHV-IDMDTI   34 (234)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCEE
T ss_conf             899948887999999999839986999-759900


No 374
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.52  E-value=2.1  Score=22.41  Aligned_cols=29  Identities=31%  Similarity=0.441  Sum_probs=25.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             57889889426899999998589989999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      -.|.|||+|==|||+|..+|..|+...-+
T Consensus        20 s~VlVvG~GGLG~~v~~~La~aGVg~i~i   48 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLAGIDSITI   48 (198)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             98999877889999999999749986999


No 375
>PRK08223 hypothetical protein; Validated
Probab=83.45  E-value=2  Score=22.51  Aligned_cols=30  Identities=27%  Similarity=0.259  Sum_probs=25.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             578898894268999999985899899998
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      --|.|||+|=-||-+|..+|+.|+-..-+-
T Consensus        28 s~VlVvG~GGlGs~~a~~LAraGVG~i~lv   57 (287)
T PRK08223         28 SRVAIAGLGGVGGVHLLTLARLGIGKFNIA   57 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             968999367557999999998289759997


No 376
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864   Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione   Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=83.41  E-value=0.39  Score=27.60  Aligned_cols=34  Identities=38%  Similarity=0.585  Sum_probs=27.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf             63578898894268999999985899-89999807
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGA-STALITHK   37 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~-~v~L~~~~   37 (626)
                      +.||.+|||||-.|.||-|.+|.+-- +|..+...
T Consensus         2 ~a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q   36 (486)
T TIGR01423         2 KAYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQ   36 (486)
T ss_pred             CEEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEE
T ss_conf             40578998247774100101233210316899842


No 377
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.38  E-value=1.7  Score=23.03  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCE--EEEECCHH
Q ss_conf             889889426899999998589989--99980762
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKTS   39 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~~   39 (626)
                      |.|||+|+-|+-.|+.++..|.-.  .|+..+++
T Consensus         6 v~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~   39 (312)
T cd05293           6 VTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             9998978889999999996699887999938898


No 378
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.31  E-value=2  Score=22.59  Aligned_cols=34  Identities=18%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +|+  |.|+|.|-.|.-||-.+.++|++|..+..+.
T Consensus         6 ~k~--v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~   39 (438)
T PRK03806          6 GKN--VVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   39 (438)
T ss_pred             CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             998--9999457888999999997899699998999


No 379
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.30  E-value=1.6  Score=23.16  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=31.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|+|.|..|.-+|-.+.+.|++|..+..+++.+
T Consensus        15 V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~   48 (487)
T PRK03369         15 VLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL   48 (487)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf             9999156838999999997869799998982577


No 380
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=83.25  E-value=2  Score=22.51  Aligned_cols=30  Identities=33%  Similarity=0.374  Sum_probs=26.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             578898894268999999985899899998
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      --|.|||+|=-||-+|..||..|+-.+-+-
T Consensus        43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~iv   72 (392)
T PRK07878         43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIV   72 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             978998787578999999998289759998


No 381
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=83.09  E-value=2.7  Score=21.65  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHH
Q ss_conf             7635788988942689999999858998-9999807626
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTST   40 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~~   40 (626)
                      +++  |.|||+|-.|.-++-.+.++|++ +.++.=.+++
T Consensus        12 ~~~--vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~k   48 (134)
T pfam01488        12 GKK--VLLIGAGEMARLAAKHLLSKGAKKITIANRTLEK   48 (134)
T ss_pred             CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             898--9999960999999999997599889995475789


No 382
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102   Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=82.86  E-value=1.6  Score=23.15  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             88988942689999999858998999980762601246
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      |+|-|||+||.-+|-.++..|..-.++|.+- -+|-.|
T Consensus         2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~-vlGG~v   38 (454)
T TIGR02731         2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARD-VLGGKV   38 (454)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEECHH-HCCCCE
T ss_conf             5772274556778878763589626863210-035502


No 383
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533    Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=82.76  E-value=0.76  Score=25.55  Aligned_cols=99  Identities=11%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             HHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCCC------CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9999997089968980-0101120258811322203586------33445433346643101344432023322247511
Q gi|254780808|r  106 AMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDNS------MIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSP  178 (626)
Q Consensus       106 ~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g~------~~~~~~viiatGtfl~g~~~~g~~~~~~gr~~~~~  178 (626)
                      |...+ .+-|||+|.+ .-++.|..++++++||.-.-+.      .-.++-|||+.|.|-|.++.            .-+
T Consensus       204 YL~pA-~kRpNle~~t~af~~ki~feg~ratGVe~~~ggst~~e~~~ankEVilsagainSPqlL------------~lS  270 (540)
T TIGR01810       204 YLDPA-LKRPNLEVRTRAFVDKIVFEGKRATGVEFKKGGSTIKERVKANKEVILSAGAINSPQLL------------QLS  270 (540)
T ss_pred             HHHHH-HCCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCEECCCCEEEEECCHHHHHHHH------------HHC
T ss_conf             64466-40787200142222000330883799888228973300001244578833412135899------------762


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCC
Q ss_conf             1331000010112005444454410110000134432114787
Q gi|254780808|r  179 SNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADE  221 (626)
Q Consensus       179 s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~  221 (626)
                      -++-|+-|++++++..-    .-|-|-..--|.-.+..|..-.
T Consensus       271 GiG~aehL~e~gI~~~~----~lPGVGeNl~DHlE~Y~Q~~ck  309 (540)
T TIGR01810       271 GIGDAEHLKELGIELKV----ELPGVGENLQDHLEVYLQYACK  309 (540)
T ss_pred             CCCCHHHHHHCCCCEEE----CCCCCCCCHHHHHHHHHHHHCC
T ss_conf             89717999855896065----2787876334356423224228


No 384
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=82.67  E-value=1.9  Score=22.71  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=33.7

Q ss_pred             EEEECCCHHHHHHHHHHHHC--CCCEEEEECCH--HHCCCCCC
Q ss_conf             88988942689999999858--99899998076--26012466
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKL--GASTALITHKT--STIGSMSC   46 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~--~~~ael~C   46 (626)
                      |.|||||-||-=.|..+-++  +..+..+|.|+  |++|.-|-
T Consensus         3 I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVV   45 (770)
T PRK08255          3 IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVV   45 (770)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEE
T ss_conf             9997787589999999986589997479842799995244687


No 385
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.50  E-value=2.4  Score=21.95  Aligned_cols=31  Identities=26%  Similarity=0.471  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+|||||-.+..=+-.+.+.|++|.++...+
T Consensus        16 vLVvGGG~VA~rK~~~Ll~~ga~VtVvsp~~   46 (157)
T PRK06719         16 VVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9998898999999999987879699999986


No 386
>PRK07832 short chain dehydrogenase; Provisional
Probab=82.48  E-value=3.1  Score=21.19  Aligned_cols=79  Identities=20%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             88988942-68999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      |+|-||+- =|-+-|.++|+.|++|.|.--+.+.+.+              +..|++.+|+....               
T Consensus         3 alITGassGIG~a~A~~la~~Ga~v~l~~r~~~~l~~--------------~~~~l~~~g~~~~~---------------   53 (272)
T PRK07832          3 CFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQ--------------TVADARALGGTVPE---------------   53 (272)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------------HHHHHHHCCCCEEE---------------
T ss_conf             9994720199999999999889989999898899999--------------99999845897147---------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             7855534678784999999999999708996898
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                          ..++.. .|.+.-...+.+.++.+..|+++
T Consensus        54 ----~~~~Dv-sd~~~v~~~~~~~~~~~g~iDiL   82 (272)
T PRK07832         54 ----HRALDI-SDYDAVAAFAADIHAAHPSMDVV   82 (272)
T ss_pred             ----EEECCC-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             ----885668-99999999999999972998889


No 387
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=82.48  E-value=1.9  Score=22.71  Aligned_cols=33  Identities=24%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCC----CEEEEECCHHH
Q ss_conf             889889-4268999999985899----89999807626
Q gi|254780808|r    8 VIVIGG-GHAGCEAAAVAAKLGA----STALITHKTST   40 (626)
Q Consensus         8 ViVIGa-G~AG~EAA~~~Ar~G~----~v~L~~~~~~~   40 (626)
                      |.|||| |+-|+..|+.++..+.    .+.|+..+++.
T Consensus         1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~   38 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK   38 (263)
T ss_pred             CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf             98987797799999999982899999889999589872


No 388
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.99  E-value=2.3  Score=22.11  Aligned_cols=29  Identities=34%  Similarity=0.406  Sum_probs=25.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             57889889426899999998589989999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      -.|.|||+|=-||-+|..||+.|+-.+-+
T Consensus       139 a~VlivG~GGLGs~~a~yLA~aGVG~i~l  167 (379)
T PRK08762        139 ARVLLIGAGGLGSPAAFYLAAAGVGHLRI  167 (379)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             97899888755799999999837975897


No 389
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731    Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=81.85  E-value=1.9  Score=22.75  Aligned_cols=28  Identities=39%  Similarity=0.527  Sum_probs=25.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898894268999999985899899998
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      |.|||+|==||-||..||++|+=+.-+=
T Consensus        24 VLiiGaGgLGs~~~~~LA~AGVG~i~i~   51 (210)
T TIGR02356        24 VLIIGAGGLGSPAALYLAAAGVGTITIV   51 (210)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCCEEEEE
T ss_conf             5999726145689999982888378998


No 390
>KOG3851 consensus
Probab=81.71  E-value=1  Score=24.54  Aligned_cols=289  Identities=20%  Similarity=0.228  Sum_probs=144.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf             63578898894268999999985899--8999980762601246670022112248999998630399999988631-48
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI-QF   80 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i-~~   80 (626)
                      +.|.|.|||||-+||-.|.+.+|.=-  +|..+|..-+..    --|-+--+|-           |+|..  |.+.- |.
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy----YQPgfTLvGg-----------Gl~~l--~~srr~~a  100 (446)
T KOG3851          38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY----YQPGFTLVGG-----------GLKSL--DSSRRKQA  100 (446)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHCC----CCCCEEEECC-----------CHHHH--HHCCCCCC
T ss_conf             0348999867863057899998656898557755215324----5765178643-----------04446--55367411


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             87307878555346787849999999999997089968980010112025881132220358633445433346643101
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRG  160 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~g  160 (626)
                      -+     -|++                         -+-+++-|.++.++++.   |.|..|.++.-.-.|+|+|--|+-
T Consensus       101 ~l-----iP~~-------------------------a~wi~ekv~~f~P~~N~---v~t~gg~eIsYdylviA~Giql~y  147 (446)
T KOG3851         101 SL-----IPKG-------------------------ATWIKEKVKEFNPDKNT---VVTRGGEEISYDYLVIAMGIQLDY  147 (446)
T ss_pred             CC-----CCCC-------------------------CHHHHHHHHHCCCCCCE---EECCCCCEEEEEEEEEEEECEECC
T ss_conf             11-----5677-------------------------58999888750877674---770599677665676654024440


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf             34443202332224751113310000101120054444544101100001344321147876687774356---578000
Q gi|254780808|r  161 VIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTD---KITNRQ  237 (626)
Q Consensus       161 ~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~---~~~~~q  237 (626)
                      ...                .++.+.+..         -+.|-.-...++|-.--+.+.....+.-|.|-+.   +.-..|
T Consensus       148 ~~I----------------kGl~Eal~t---------P~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQ  202 (446)
T KOG3851         148 GKI----------------KGLVEALDT---------PGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQ  202 (446)
T ss_pred             CHH----------------CCHHHHCCC---------CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCH
T ss_conf             200----------------375766259---------9835546867899999999723578657834998641178853


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCEEEE--CCCCCCEEEECCC
Q ss_conf             000001232001477764024575414432356422255321233567643345-----201301--5787764543477
Q gi|254780808|r  238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGH-----QIFLEP--EGLNTDVVYPNGI  310 (626)
Q Consensus       238 ~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h-----~VqLrp--E~~~~~~~n~vGF  310 (626)
                      ..||+++.--.-+. .|++.+..             |-.|++.   -|+-+.|+     ++|=|-  -|...+++-++  
T Consensus       203 Ki~yise~y~Rk~g-vRd~a~ii-------------y~Tsl~~---iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~--  263 (446)
T KOG3851         203 KIMYISESYFRKRG-VRDNANII-------------YNTSLPT---IFGVKHYADALEKVIQERNITVNYKRNLIEVR--  263 (446)
T ss_pred             HHHHHHHHHHHHHC-CCCCCCEE-------------EECCCCC---EECHHHHHHHHHHHHHHCCEEEEECCCEEEEE--
T ss_conf             31123599998727-55565279-------------8517650---10378899999999875453763012358985--


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCEEEEC--CHHHHCCC-------CHHHH---------------HHHHHHHCCCEEEEE
Q ss_conf             6668988999999875434001001100--01211023-------54565---------------677654033415662
Q gi|254780808|r  311 STALPEEIQHQFIRTIPGLEKVNIIRPG--YAIEYDYI-------NPKEL---------------FPTLETKKISGLFLA  366 (626)
Q Consensus       311 qTsL~~~~Q~rv~r~IPGLEnAef~R~G--y~ieyd~~-------~P~~L---------------~~tLe~k~~~~LffA  366 (626)
                           ..+|+.||..+-        .||  +-++|+.+       .|..|               ..|||+|+.||+|--
T Consensus       264 -----~~~~~AvFe~L~--------kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgi  330 (446)
T KOG3851         264 -----TNDRKAVFENLD--------KPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGI  330 (446)
T ss_pred             -----CCCHHHHHHHCC--------CCCCEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCEECCHHHHCCCCCCCCEEE
T ss_conf             -----364143887547--------9985147756036416998872554137565755646547323202568870241


Q ss_pred             EEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             13304334---6666667789999987420334565
Q gi|254780808|r  367 GQINGTTG---YEEAAAQGLVAGINSARKSNKLDCI  399 (626)
Q Consensus       367 GQI~GteG---YeEAAAqGl~AGiNa~~~~~~~~p~  399 (626)
                      |--.++--   |-..|||-=+---|....++|+.|.
T Consensus       331 GDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt  366 (446)
T KOG3851         331 GDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPT  366 (446)
T ss_pred             CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             234689952667888742744356599996479864


No 391
>PRK07411 hypothetical protein; Validated
Probab=81.71  E-value=2.5  Score=21.92  Aligned_cols=29  Identities=28%  Similarity=0.276  Sum_probs=25.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             57889889426899999998589989999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      --|.|||+|=-||-+|..||..|+-..-+
T Consensus        39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~i   67 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGI   67 (390)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             97899888723799999999838975999


No 392
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.60  E-value=2.3  Score=22.14  Aligned_cols=34  Identities=35%  Similarity=0.514  Sum_probs=30.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +|+  |.|||.|-.|.-||-.|.++|++|.....++
T Consensus         9 ~k~--i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~   42 (450)
T PRK02472          9 NKK--VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   42 (450)
T ss_pred             CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             998--9999778999999999998869899984886


No 393
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=81.50  E-value=2.4  Score=22.02  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=37.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC
Q ss_conf             8898894268999999985899899998076260124667002
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI   50 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~   50 (626)
                      |-|+|||-=|..-|.++.++|++|..+...+|.-|.-+|+-.+
T Consensus        15 IgIlGgGQLg~Mla~aA~~LG~~vivld~~~d~PA~~vAd~~~   57 (395)
T PRK09288         15 VMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSH   57 (395)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEE
T ss_conf             9998988999999999998799899984899594467286579


No 394
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.40  E-value=2.4  Score=21.99  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCE-EEEECCH
Q ss_conf             9876357889889426899999998589989-9998076
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAST-ALITHKT   38 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v-~L~~~~~   38 (626)
                      ||+ +-.|.|||+|+-|+-.|+.+...|+.- .|+-.+.
T Consensus         4 ~~~-~~KV~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~   41 (322)
T PTZ00082          4 MIP-RKKISLIGSGNIGGVMAYLIQLKNLADVVLFDIVP   41 (322)
T ss_pred             CCC-CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             017-98299989698999999999638997799997889


No 395
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.35  E-value=2.6  Score=21.74  Aligned_cols=28  Identities=39%  Similarity=0.571  Sum_probs=24.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             5788988942689999999858998999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTAL   33 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L   33 (626)
                      --|.|||+|=-||-+|..||..|+-..-
T Consensus        42 a~VlvvG~GGLG~p~~~yLaaaGvG~i~   69 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTIT   69 (370)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf             9789988875789999999982897489


No 396
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.10  E-value=2.3  Score=22.10  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|+|+|==||=-|+.+++.|..|.|+. +.+++
T Consensus         3 I~I~GaGAiG~~~a~~L~~~g~~V~lv~-r~~~~   35 (306)
T PRK12921          3 IAVVGAGAVGGTFGARLLEAGRDVTFLG-RSARA   35 (306)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCHH
T ss_conf             9999924999999999983699889997-00099


No 397
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.79  E-value=2.9  Score=21.38  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=27.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEE-EEECC
Q ss_conf             3578898894268999999985899899-99807
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHK   37 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~~   37 (626)
                      +-.|.|||+|=-|||+|..+|+.|+... |+-.+
T Consensus        21 ~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d   54 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             0959998878899999999998379869999899


No 398
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.71  E-value=2.4  Score=21.94  Aligned_cols=31  Identities=35%  Similarity=0.560  Sum_probs=25.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCE--EEEECCH
Q ss_conf             889889426899999998589989--9998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~   38 (626)
                      |.|||+|+-|+-.|+.++.+|.--  .|+-.+.
T Consensus         2 I~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             899996989999999998569988799992889


No 399
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.70  E-value=2.6  Score=21.68  Aligned_cols=106  Identities=13%  Similarity=0.037  Sum_probs=46.8

Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHH-HHHHHCCEEEECCHHHHCCC--CHHHHHHHHHHHCCCEEEEEEEEECCCHHH
Q ss_conf             877645434776668988999999875-43400100110001211023--545656776540334156621330433466
Q gi|254780808|r  300 LNTDVVYPNGISTALPEEIQHQFIRTI-PGLEKVNIIRPGYAIEYDYI--NPKELFPTLETKKISGLFLAGQINGTTGYE  376 (626)
Q Consensus       300 ~~~~~~n~vGFqTsL~~~~Q~rv~r~I-PGLEnAef~R~Gy~ieyd~~--~P~~L~~tLe~k~~~~LffAGQI~GteGYe  376 (626)
                      ..+..|.+.|--          |=||. |-|.|+-|-.+|.-..|..+  ++..|...++.-..++  |+| .|=|==|=
T Consensus       213 ~~tk~fgviG~P----------I~HS~SP~lHN~~f~~~gl~~~Y~~~~v~~~~l~~f~~~~~~~~--f~G-~sVTiP~K  279 (477)
T PRK09310        213 AQSHIYGLIGDP----------VDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPEFFSLIRDLP--FLG-LSVTMPLK  279 (477)
T ss_pred             CCCCEEEEECCC----------HHHCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCE-EEECCCCH
T ss_conf             567489998176----------23133899999999977999677888568889999999875379--988-99880779


Q ss_pred             HHHHHHHHH-------HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             666677899-------99987420334565465321079999998860787
Q gi|254780808|r  377 EAAAQGLVA-------GINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV  420 (626)
Q Consensus       377 EAAAqGl~A-------GiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~  420 (626)
                      |++-. ++-       -|.|+..+..++.-..+-+.-|.|. +..|...++
T Consensus       280 ~~i~~-~lDeld~~A~~iGAVNTiv~~~gkl~G~NTD~~G~-~~~L~~~~~  328 (477)
T PRK09310        280 TAVLD-FLDKLDPSVKLCGSCNTLVFRNGKILGYNTDGEGL-FSLLKQKNI  328 (477)
T ss_pred             HHHHH-HHCCCCHHHHHHCCEEEEEEECCEEEEEECCHHHH-HHHHHHHCC
T ss_conf             99998-71528988997376658998899899982578999-999997099


No 400
>LOAD_Hrd consensus
Probab=80.66  E-value=2  Score=22.58  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHH
Q ss_conf             46568999876232737888750288999899999
Q gi|254780808|r  574 PALSNELKEKLSILKPFNLLQASKIEGMTPAALNL  608 (626)
Q Consensus       574 ~gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~  608 (626)
                      .=+++.....+.+.+|.|+.|-.+|+||++.-+.-
T Consensus        28 ~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~~   62 (77)
T LOAD_Hrd         28 SIFSDATLKEMAALLPTTVSELLAIDGVGEAKVEK   62 (77)
T ss_pred             EEECHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH
T ss_conf             45899999999997899999982899969999999


No 401
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=80.64  E-value=3.2  Score=21.07  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=23.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             88988942689999999858998999
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTAL   33 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L   33 (626)
                      |.|||+|=-|||.+--+|.+|+...-
T Consensus         2 VlvvGaGglG~e~lk~La~~Gvg~i~   27 (312)
T cd01489           2 VLVVGAGGIGCELLKNLVLTGFGEIH   27 (312)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEE
T ss_conf             89988888899999999982898599


No 402
>KOG2403 consensus
Probab=80.60  E-value=1.9  Score=22.75  Aligned_cols=152  Identities=26%  Similarity=0.300  Sum_probs=75.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEE----CCHHHCCCCCCCCCC-CCCC------------H------------
Q ss_conf             3578898894268999999985899899998----076260124667002-2112------------2------------
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTALIT----HKTSTIGSMSCNPAI-GGLG------------K------------   55 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~----~~~~~~ael~Cnps~-gg~a------------k------------   55 (626)
                      .||-+|||+|=||--||..+|..|.+|.-++    .++.++++.--+|+. |-..            |            
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i~  134 (642)
T KOG2403          55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAIH  134 (642)
T ss_pred             ECEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             01058993153334666665306733788732425666513643212444326777514554444002323467432446


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-----CCCCCCCCHHHHH---HHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             ------489999986303999999886314887-307-----8785553467878---4999999999999708996898
Q gi|254780808|r   56 ------GHLVREIDALDGLMGRVADAAGIQFRV-LNV-----KKGPAVRGPRTQA---DRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        56 ------g~L~~Ei~aLgg~m~~~aD~~~i~~r~-ln~-----skGpAv~alraqv---DR~~fs~~vt~~l~~~pni~i~  120 (626)
                            -.-+.|+..+|--..+..|.. |.-|. .--     +.|-|.++-++ +   ++.+++.--+..+...-+..+ 
T Consensus       135 ym~~ea~~a~~el~~~g~~f~~~~dg~-i~q~~~gg~s~~~gkggq~~r~~~~-Ad~tg~~~~~tL~~~~l~~~~~~f~-  211 (642)
T KOG2403         135 YMCREAPKAVIELENYGMPFSRTEDGK-IYQRAFGGQSLDFGKGGQAYRACCV-ADRTGHALLHTLYGQSLRHNTSFFV-  211 (642)
T ss_pred             HHHHHCCHHHHHHHHCCCCCCCCCCCC-HHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHCCCHHHHH-
T ss_conf             877416234788873468656566775-7776541235676666666617886-2166607776667777401045689-


Q ss_pred             HHHHCCCCCCCCC-----EEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             0010112025881-----13222035863344543334664310
Q gi|254780808|r  121 QGEVAGFNTEKNI-----ISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus       121 ~~eV~~l~~~~~~-----~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      .==..+++...+.     ...+.+.....+.++.+|++||..=+
T Consensus       212 ~yfa~dll~~~g~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~  255 (642)
T KOG2403         212 EYFALDLLMSQGECVGVIALNLEDGTIHRFRAKNTILATGGYGR  255 (642)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCE
T ss_conf             99999988741681079999962264211134006999841662


No 403
>PRK06179 short chain dehydrogenase; Provisional
Probab=79.95  E-value=4.1  Score=20.36  Aligned_cols=42  Identities=19%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             CCCCCCCEEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             987635788988942689--99999985899899998076260124
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      |+|++  |+||=||-.|+  +.|..+|+.|++|.+..-+.+...++
T Consensus         1 M~~~K--valITGassGIG~a~A~~la~~G~~V~~~~r~~~~~~~~   44 (270)
T PRK06179          1 MSNKK--VALVTGASSGIGRATAEALARAGYRVFGTSRNPARATPI   44 (270)
T ss_pred             CCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHCC
T ss_conf             98995--899907246999999999998799999996897773054


No 404
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.64  E-value=2.1  Score=22.45  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=28.3

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894-268999999985899899998076260
Q gi|254780808|r    8 VIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |+|-||+ -=|-+.|..+|+.|++|.+.-.+.+.+
T Consensus         3 VlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l   37 (259)
T PRK08340          3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENL   37 (259)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             99975877899999999998799999997998999


No 405
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=79.63  E-value=3.4  Score=20.90  Aligned_cols=48  Identities=23%  Similarity=0.276  Sum_probs=36.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6357889889426899999998589989999807626012466700221122489999
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE   61 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~E   61 (626)
                      ..|||+|.|-|+--|=-+-++|.-|-+|+.+.-          ||.-|+...++-..+
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~----------Nd~YG~~~asltl~q   52 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDK----------NDYYGSTSASLTLTQ   52 (434)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEC----------CCCCCCCCCCEEHHH
T ss_conf             300189962668999998886226751799707----------876675333343899


No 406
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.44  E-value=2.9  Score=21.39  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=25.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEE--EECCH
Q ss_conf             88988942689999999858998999--98076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTAL--ITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L--~~~~~   38 (626)
                      |.|||+|+-|+-.|+.++..|.--.|  +..+.
T Consensus         3 I~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (312)
T PRK06223          3 ISIIGAGNVGATLAHLLALKELGKDVVLFDIPE   35 (312)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             999996989999999998579987489976999


No 407
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.39  E-value=4  Score=20.44  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=28.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEE-EEECCHHHC
Q ss_conf             3578898894268999999985899899-998076260
Q gi|254780808|r    5 SYDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTI   41 (626)
Q Consensus         5 ~~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~~~~~~   41 (626)
                      +-+|.|||+|=|+-=++++++++|++-. ++.-+.++.
T Consensus        19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~   56 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKA   56 (155)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             99999986758999999999971998228860899999


No 408
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=79.39  E-value=2.3  Score=22.10  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=24.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             788988942689999999858998999
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTAL   33 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L   33 (626)
                      -|.|||+|-=||++|+.+|++|+...-
T Consensus        32 ~vlvvG~GglG~~~~~~la~aGvg~l~   58 (254)
T COG0476          32 RVLVVGAGGLGSPAAKYLALAGVGKLT   58 (254)
T ss_pred             EEEEECCCCCCCHHHHHHHHCCCCEEE
T ss_conf             289977763351999999982698599


No 409
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=79.20  E-value=3.1  Score=21.22  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=28.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |.|||+|==||=-|+.+++.|..|.|+.-..
T Consensus         1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~   31 (150)
T pfam02558         1 IAILGAGAVGSLYGARLARAGHDVTLIARGR   31 (150)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999668999999999997799289997563


No 410
>PRK05855 short chain dehydrogenase; Validated
Probab=79.09  E-value=4.8  Score=19.84  Aligned_cols=56  Identities=13%  Similarity=0.106  Sum_probs=45.3

Q ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             156621330433466666677899999874203345654653210799999988607877
Q gi|254780808|r  362 GLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVL  421 (626)
Q Consensus       362 ~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~~~~p~~l~R~eaYiGVlIDDLitkg~~  421 (626)
                      .=.|.|++-=+||    |++||=..+--..--.|-.-.+.+|++.=.--..+.+-..|..
T Consensus       310 ~~rFsGKvAvVTG----A~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~  365 (582)
T PRK05855        310 RGRFGGKLVVVTG----AGSGIGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAV  365 (582)
T ss_pred             CCCCCCCEEEEEC----CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCE
T ss_conf             8874995899958----7578999999999977999999607999999999999951984


No 411
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.95  E-value=3.4  Score=20.89  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHCCCCEEEEE----CCHHHC
Q ss_conf             8999999985899899998----076260
Q gi|254780808|r   17 GCEAAAVAAKLGASTALIT----HKTSTI   41 (626)
Q Consensus        17 G~EAA~~~Ar~G~~v~L~~----~~~~~~   41 (626)
                      -.|.-...|..|+--+|++    .+|+++
T Consensus        51 ~~~~i~~~aE~GVv~LLF~iGLEls~~rL   79 (615)
T PRK03562         51 DAESILHFAEIGVVLMLFVIGLELDPQRL   79 (615)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             88999999999799999998857899999


No 412
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.76  E-value=3.1  Score=21.21  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=25.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCE--EEEECCH
Q ss_conf             889889426899999998589989--9998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~   38 (626)
                      |.|||+|+-|+-.|+.++..|.-.  .|+-.+.
T Consensus         3 I~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~   35 (308)
T cd05292           3 VAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             999994888999999998679988799991889


No 413
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.54  E-value=3.7  Score=20.64  Aligned_cols=29  Identities=34%  Similarity=0.377  Sum_probs=25.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             78898894268999999985899899998
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      -|.|||+|==||-+|..||..|+-..-+-
T Consensus        30 ~VlvvG~GGLG~~~~~yLa~aGvG~i~i~   58 (355)
T PRK05597         30 KVSVIGAGGLGSPALLYLAGAGVGHITII   58 (355)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             68998777668999999998499759997


No 414
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=78.45  E-value=3.2  Score=21.13  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=25.2

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCC--EEEEECCH
Q ss_conf             88988942-689999999858998--99998076
Q gi|254780808|r    8 VIVIGGGH-AGCEAAAVAAKLGAS--TALITHKT   38 (626)
Q Consensus         8 ViVIGaG~-AG~EAA~~~Ar~G~~--v~L~~~~~   38 (626)
                      |.|||+|+ =|+-.|+.++..|.-  ..|+-.+.
T Consensus         3 V~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~   36 (142)
T pfam00056         3 VAVVGAGGGVGSSLAFALALQGLADELVLVDINK   36 (142)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             9998987789999999997479663478850577


No 415
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=78.29  E-value=3.4  Score=20.87  Aligned_cols=110  Identities=18%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCC-----CHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             8898894268999999985899899998076260124667002211-----224899999863039----9999988631
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL-----GKGHLVREIDALDGL----MGRVADAAGI   78 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~-----akg~L~~Ei~aLgg~----m~~~aD~~~i   78 (626)
                      |=|||||-=|=-=|++++++|++|..++..++.-|-.+++--+...     +--.|+..-|.+-=+    -..+.++..-
T Consensus         4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~   83 (375)
T COG0026           4 VGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAA   83 (375)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf             99976869999999999864977999569999963341431541577888999999862988998514698899999996


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH
Q ss_conf             48873078785553467878499999999999970899689800
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG  122 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~  122 (626)
                      +..+   .  |--.+|+.--||..=+...++.=-..|.-.++..
T Consensus        84 ~~~v---~--p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~  122 (375)
T COG0026          84 SVKV---F--PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDS  122 (375)
T ss_pred             HCCC---C--CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             1676---9--9989988776689999999976999998278579


No 416
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=77.70  E-value=3.7  Score=20.68  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CCCCCCEEEECCCHHHHHHHH--HHHHCCCCE-EEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             876357889889426899999--998589989-99980762601246670022112248999998630399999988631
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAA--VAAKLGAST-ALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~--~~Ar~G~~v-~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      .++.|.|++||+|+=|.--+-  ...+.|.++ .+|-.+|+.+|.-+.+-.         +.-|+.|...    ..+..|
T Consensus        81 ~~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~kiG~~i~gi~---------V~~i~~L~~~----i~~~~i  147 (211)
T PRK05472         81 LDKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPEKVGTKIGGIP---------VYHIDELEEV----IKENDI  147 (211)
T ss_pred             CCCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHHHCCCEECCEE---------EECHHHHHHH----HHHHCC
T ss_conf             999750899888779999984876231897899997489788598838838---------7349999999----998199


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             488730787855534678784999999999999708
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ  114 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~  114 (626)
                      +.=+      -||.+-.||        .+.+.|-+.
T Consensus       148 ~iaI------iaVP~~~AQ--------~vad~Lv~a  169 (211)
T PRK05472        148 EIAI------LTVPAEAAQ--------EVADRLVEA  169 (211)
T ss_pred             CEEE------EECCHHHHH--------HHHHHHHHH
T ss_conf             3899------955768899--------999999981


No 417
>pfam00570 HRDC HRDC domain. The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain cause human disease. It is interesting to note that the RecQ helicase in Deinococcus radiodurans has three tandem HRDC domains.
Probab=77.69  E-value=2.8  Score=21.49  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             CCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHH
Q ss_conf             656899987623273788875028899989999
Q gi|254780808|r  575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALN  607 (626)
Q Consensus       575 gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~  607 (626)
                      =+|+++...+.+.+|.|+.+-.+|+|+++.-+.
T Consensus        26 I~~d~~L~~ia~~~P~s~~~L~~i~g~~~~~~~   58 (68)
T pfam00570        26 IFSDATLLEIAEKLPRTLEELLRIPGVGPRKLE   58 (68)
T ss_pred             EECHHHHHHHHHHCCCCHHHHHCCCCCCHHHHH
T ss_conf             477999999998784999998089999999999


No 418
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.29  E-value=3.8  Score=20.56  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +|+  |.|||.|-.|--||-.|.+.|++|..+..++
T Consensus         5 ~k~--v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~   38 (445)
T PRK04308          5 NKK--ILVAGLGGTGISMIAYLRKNGAEVAAYDAEL   38 (445)
T ss_pred             CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             998--9999989999999999997899199997999


No 419
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.01  E-value=3.9  Score=20.47  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             763578898894268999999985899899998076
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +|+  |.|+|-|-.|.-+|-.+.+.|++|..+..+.
T Consensus        14 ~kk--v~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~   47 (458)
T PRK01710         14 NKK--VAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             996--9999787889999999997889799998988


No 420
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.37  E-value=4  Score=20.42  Aligned_cols=30  Identities=23%  Similarity=0.163  Sum_probs=24.7

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf             889889-42689999999858998--9999807
Q gi|254780808|r    8 VIVIGG-GHAGCEAAAVAAKLGAS--TALITHK   37 (626)
Q Consensus         8 ViVIGa-G~AG~EAA~~~Ar~G~~--v~L~~~~   37 (626)
                      |.|||| |+=|+-.|+.++..|.-  ..|+-.+
T Consensus         3 V~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           3 VAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             999999981899999999729997769998277


No 421
>KOG2018 consensus
Probab=76.18  E-value=3.8  Score=20.54  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=27.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |+|||+|--||=++--++|.|+.-.++- .+|.+
T Consensus        77 VVVVG~GgVGSwv~nmL~RSG~qKi~iV-DfdqV  109 (430)
T KOG2018          77 VVVVGAGGVGSWVANMLLRSGVQKIRIV-DFDQV  109 (430)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEE-CHHHC
T ss_conf             9999168522999999998268638995-31014


No 422
>KOG3923 consensus
Probab=76.15  E-value=4  Score=20.39  Aligned_cols=43  Identities=21%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC----CCEEEEECCHHHCCCCCCCC
Q ss_conf             57889889426899999998589----98999980762601246670
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG----ASTALITHKTSTIGSMSCNP   48 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G----~~v~L~~~~~~~~ael~Cnp   48 (626)
                      -+|.|||+|--||--||.+.+++    +++.=++.--|++-|..||-
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~   50 (342)
T KOG3923           4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSD   50 (342)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf             60899747710156899999865412688622787457786555554


No 423
>PRK08017 short chain dehydrogenase; Provisional
Probab=75.96  E-value=5.1  Score=19.66  Aligned_cols=41  Identities=22%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             87635788988942-68999999985899899998076260124
Q gi|254780808|r    2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      |+|.  |+|.||+- =|-+.|.++|+.|.+|.+.--+++.+.++
T Consensus         1 M~K~--vlITGassGIG~a~A~~la~~G~~V~~~~r~~~~l~~~   42 (256)
T PRK08017          1 MQKS--VLITGCSSGIGLESALELKRQGFRVLAGCRKPDDVARM   42 (256)
T ss_pred             CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             9978--99965876899999999998799999996998999999


No 424
>PRK08263 short chain dehydrogenase; Provisional
Probab=75.65  E-value=5.3  Score=19.52  Aligned_cols=79  Identities=20%  Similarity=0.310  Sum_probs=48.2

Q ss_pred             CCCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98763578898894268--9999999858998999980762601246670022112248999998630399999988631
Q gi|254780808|r    1 MINRSYDVIVIGGGHAG--CEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG--~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
                      ||.|   |++|=|+-.|  -+.|..+++.|.+|.+.--+.+.+.++.              .+   +|+       .  +
T Consensus         1 m~gK---v~lITGassGIG~a~A~~la~~G~~Vv~~~R~~~~l~~l~--------------~~---~~~-------~--~   51 (275)
T PRK08263          1 MMGK---VWFITGASRGFGREWTEAALERGDRVVATARDTATLADLA--------------ER---YGD-------A--L   51 (275)
T ss_pred             CCCC---EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--------------HH---CCC-------C--E
T ss_conf             9899---8999467439999999999987998999979899999999--------------97---599-------6--7


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             488730787855534678784999999999999708996898
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                                -.+ .+.. .|.+.-.+.+.+.++.+-.|+++
T Consensus        52 ----------~~~-~~Dv-td~~~v~~~v~~~~~~~G~iDiL   81 (275)
T PRK08263         52 ----------LPL-ALDV-TDRAAVFAAVEQAVKHFGRLDIV   81 (275)
T ss_pred             ----------EEE-EEEC-CCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             ----------999-9648-99999999999999984998789


No 425
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=75.61  E-value=3.5  Score=20.81  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=25.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCE--EEEECCH
Q ss_conf             889889426899999998589989--9998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAST--ALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~   38 (626)
                      |.|||+|+=|+-.|+.++..|.--  .|+..+.
T Consensus         1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~   33 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             989896889999999998679988799981899


No 426
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.38  E-value=5  Score=19.70  Aligned_cols=42  Identities=21%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             87635788988942-689999999858998999980762601246
Q gi|254780808|r    2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      |.++  |+|.||.- =|-+-|.++|+.|.+|.|+--+.+.+.++.
T Consensus         1 M~~~--VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~   43 (256)
T PRK07024          1 MPLK--VFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA   43 (256)
T ss_pred             CCCE--EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf             9998--999846029999999999988998999989889999999


No 427
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=75.36  E-value=5.9  Score=19.23  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=11.9

Q ss_pred             HHHHHHHHHCCCCEEEE----ECCHHHC
Q ss_conf             99999998589989999----8076260
Q gi|254780808|r   18 CEAAAVAAKLGASTALI----THKTSTI   41 (626)
Q Consensus        18 ~EAA~~~Ar~G~~v~L~----~~~~~~~   41 (626)
                      .|.--..|..|+--+|+    |.+|+++
T Consensus        53 ~~~i~~laElGVv~LLF~iGLE~s~~~L   80 (602)
T PRK03659         53 VDEILHFSELGVVFLMFIIGLELNPSKL   80 (602)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             7999999999999999998977899999


No 428
>PRK06949 short chain dehydrogenase; Provisional
Probab=75.02  E-value=6.2  Score=19.07  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=46.0

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             88988942-68999999985899899998076260124667002211224899999863039999998863148873078
Q gi|254780808|r    8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNVK   86 (626)
Q Consensus         8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~s   86 (626)
                      |+|-||+- =|-+-|..+|+.|++|.+...+.+.+.+              ++.|+...|+..      ..++       
T Consensus        12 alVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~--------------~~~~i~~~g~~~------~~~~-------   64 (258)
T PRK06949         12 ALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKE--------------LRAEIEAEGGAA------HVVS-------   64 (258)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------------HHHHHHHCCCCE------EEEE-------
T ss_conf             9995857799999999999879999999698899999--------------999999659928------9998-------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             7855534678784999999999999708996898
Q gi|254780808|r   87 KGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        87 kGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                            + .. .|.+.....+.++.+.+..|++.
T Consensus        65 ------~-Dv-~~~~~v~~~v~~~~~~~G~iDiL   90 (258)
T PRK06949         65 ------L-DV-TDYQSIKAAVAHAETEAGTIDIL   90 (258)
T ss_pred             ------C-CC-CCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             ------2-68-99999999999999984999899


No 429
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=74.55  E-value=6.3  Score=18.99  Aligned_cols=34  Identities=24%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             7889889426899999998589989999807626
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      .|+|-|-|..|+.+|..+.+.|.+|.....+++.
T Consensus        30 ~VaIqG~GnVG~~~A~~l~~~Gakvvv~d~~~~~   63 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEA   63 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             9999898799999999999679979998268899


No 430
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=74.51  E-value=5.5  Score=19.40  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=10.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCC
Q ss_conf             88988942689999999858998
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAS   30 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~   30 (626)
                      |+|+|||=|+-=++|++++.|++
T Consensus       129 vlilGAGGAarAv~~aL~~~g~~  151 (283)
T COG0169         129 VLILGAGGAARAVAFALAEAGAK  151 (283)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCC
T ss_conf             99989768999999999986998


No 431
>KOG2764 consensus
Probab=74.50  E-value=2  Score=22.51  Aligned_cols=19  Identities=42%  Similarity=0.842  Sum_probs=15.3

Q ss_pred             CCCCCEEEECCCHHHHHHH
Q ss_conf             7635788988942689999
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAA   21 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA   21 (626)
                      +++|||+||=||+.|+|.=
T Consensus        65 ~~~yDviilPGG~~g~e~L   83 (247)
T KOG2764          65 DSKYDVIILPGGLPGAETL   83 (247)
T ss_pred             CCCCCEEEECCCCHHHHHH
T ss_conf             3566689946996056665


No 432
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=74.30  E-value=6.2  Score=19.07  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             CCCCCCEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8763578898894-268999999985899899998076260
Q gi|254780808|r    2 INRSYDVIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         2 ~~~~~dViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |||.  |+|.||+ -=|-+.|.++|+.|++|.+.-.+.+..
T Consensus         1 mnKv--alITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~   39 (259)
T PRK12384          1 MNKV--AVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKA   39 (259)
T ss_pred             CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             9978--99946886899999999998799999997988999


No 433
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=73.89  E-value=4.7  Score=19.94  Aligned_cols=43  Identities=33%  Similarity=0.488  Sum_probs=37.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHCCCCC-CCC
Q ss_conf             5788988942689999999858------998999980762601246-670
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKL------GASTALITHKTSTIGSMS-CNP   48 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~------G~~v~L~~~~~~~~ael~-Cnp   48 (626)
                      -+|+|||||..|.-.++.+++.      ++.+.+++..+..-|.+. ||.
T Consensus         3 ~~~~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~c~~   52 (556)
T TIGR00562         3 KEVVVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDRVGGWIYSCNT   52 (556)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCC
T ss_conf             41688617613578888876522212477305887246655751342123


No 434
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=73.55  E-value=3.5  Score=20.85  Aligned_cols=54  Identities=11%  Similarity=0.101  Sum_probs=35.9

Q ss_pred             HHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999970899689800101120258811322203586334454333466431
Q gi|254780808|r  104 RLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus       104 s~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
                      ...+...++....--....+|+.|..+++.+ .|.+.+|..+.+..||+|+.+..
T Consensus       207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~v~~~~G~~~~ad~VI~a~p~~~  260 (444)
T pfam01593       207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGV-TVTTVDGEVIEADAVIVTVPLGV  260 (444)
T ss_pred             HHHHHHHHHCCCCEEEECCEEEEEEEECCEE-EEEECCCCEEECCEEEECCCHHH
T ss_conf             9999999741598699589778999969969-99988997664486898579888


No 435
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=73.13  E-value=6.8  Score=18.76  Aligned_cols=39  Identities=23%  Similarity=0.429  Sum_probs=32.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCC
Q ss_conf             8898894268999999985899899998076-26012466
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSC   46 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~C   46 (626)
                      |.|||||=.|.-=|--+.+.|+.+..+.... ..+..|.=
T Consensus        15 VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~   54 (210)
T COG1648          15 VLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIE   54 (210)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
T ss_conf             9998998999999999974699799987874499999998


No 436
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275   This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=73.12  E-value=2.9  Score=21.44  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=24.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCC--EEEEEC
Q ss_conf             88988942689999999858998--999980
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAS--TALITH   36 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~   36 (626)
                      |.|||||--|+=-|+.+|..-.-  +.|+-.
T Consensus         4 isvIGAGfvGaTTAf~lA~KeLard~VLlDi   34 (308)
T TIGR01763         4 ISVIGAGFVGATTAFLLAEKELARDVVLLDI   34 (308)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             8997068612589999986740671689850


No 437
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=72.78  E-value=5.2  Score=19.61  Aligned_cols=70  Identities=14%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             HHHHHHHCCEEEECCHHHHCC-CCHHHHHHHHHH-HCCCE-EEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             754340010011000121102-354565677654-03341-56621330433466666677899999874203
Q gi|254780808|r  325 TIPGLEKVNIIRPGYAIEYDY-INPKELFPTLET-KKISG-LFLAGQINGTTGYEEAAAQGLVAGINSARKSN  394 (626)
Q Consensus       325 ~IPGLEnAef~R~Gy~ieyd~-~~P~~L~~tLe~-k~~~~-LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~  394 (626)
                      .+||.-|++-.=-.+++=+-. ++|..+.+.|.+ +-.|+ +=+-|+++|+.=|--|.|+-..|-.-|-....
T Consensus       271 ~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~  343 (448)
T COG0771         271 KLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFD  343 (448)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf             8754524998999999999839998999999973899986227988619889960787888889999997189


No 438
>PRK07201 short chain dehydrogenase; Provisional
Probab=72.21  E-value=7.1  Score=18.62  Aligned_cols=234  Identities=12%  Similarity=0.101  Sum_probs=114.7

Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCC--------------CCCCCCCCC-------CCCCCCCCC
Q ss_conf             33100001011200544445441011000013443211478--------------766877743-------565780000
Q gi|254780808|r  180 NSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFAD--------------ERLIPFSFM-------TDKITNRQI  238 (626)
Q Consensus       180 ~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d--------------~~~~~~s~~-------~~~~~~~q~  238 (626)
                      .++--+.++-++-.|.-+||....+|+-+.-|..+.....-              -+..|.+|-       .........
T Consensus       166 ~glP~~IyRPg~V~GdS~TG~~~k~Dgpy~~~~ll~~l~~~~p~~~P~~~~~~~~~n~vPVDfV~~Ai~~Ls~~~~~~g~  245 (663)
T PRK07201        166 CGLPWRIYRPAVVVGDSRTGEMDKIDGPYYFFKVIQKLRAVLPSWTPMLGPEGGRTNIVPVDYVVDALDHLAHADGRDGQ  245 (663)
T ss_pred             CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCC
T ss_conf             89987998085762366567644664078999999999863655456667777732251166799999999559887886


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC---CEEEECCCCCCEEEECCCCCC
Q ss_conf             0000123200147776402457541443235642225532123356764--33452---013015787764543477666
Q gi|254780808|r  239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGE--RNGHQ---IFLEPEGLNTDVVYPNGISTA  313 (626)
Q Consensus       239 ~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~--~p~h~---VqLrpE~~~~~~~n~vGFqTs  313 (626)
                      .-|.+..++..-..+...+....-..-......-+--.+++..+.+--.  .+...   ..+..-|.-...+....+.|.
T Consensus       246 ~fHL~dP~p~~~~~v~~~~a~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~  325 (663)
T PRK07201        246 TFHLTDPKPYRVGDIYNIFAEAAGAPRMALRIDAPLFGFLPGAVAAPLLALRPVARVRNAAATDLGIPAEILDFVNYPTT  325 (663)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCE
T ss_conf             78705999863899999988733897544444401322575666540136764777877667652998889864358866


Q ss_pred             CCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89889999998754340010011000121102354565677654033415662133043346666667789999987420
Q gi|254780808|r  314 LPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKS  393 (626)
Q Consensus       314 L~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGYeEAAAqGl~AGiNa~~~~  393 (626)
                      +.-.+-.+.++- +|.+--+|--|+ -..++|. -+.|++.+-.+..+.--+.|++-=+||    |++|+=+.+--+.--
T Consensus       326 ~d~~~t~~~l~~-~~i~~p~l~~ya-~~lw~yw-~~~ldp~~~~~~~~~g~L~GKvalITG----ASSGIG~A~A~~LA~  398 (663)
T PRK07201        326 FDSRETQEALKG-TGIEVPRLASYA-PRLWDYW-ERHLDPDRARDRDLRGPLEGKHVIITG----ASSGIGRATAIKVAE  398 (663)
T ss_pred             ECCHHHHHHHCC-CCCCCCCHHHHH-HHHHHHH-HHCCCCCCCCCCCCCCCCCCCEEEECC----CCCHHHHHHHHHHHH
T ss_conf             432657887600-588887745512-7888888-752692001377768887994799938----875999999999998


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             334565465321079999998860787
Q gi|254780808|r  394 NKLDCICFSRTDSYIGVMIDDLTSKGV  420 (626)
Q Consensus       394 ~~~~p~~l~R~eaYiGVlIDDLitkg~  420 (626)
                      .|-.-++..|++.=+--+.+++-..|-
T Consensus       399 ~GA~Vvl~AR~~e~Le~v~~ei~~~Gg  425 (663)
T PRK07201        399 AGATVFALARDGEKLDELVAEIRARGG  425 (663)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             799899998999999999999995599


No 439
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=71.88  E-value=4.7  Score=19.90  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHH
Q ss_conf             6568999876232737888750288999899999
Q gi|254780808|r  575 ALSNELKEKLSILKPFNLLQASKIEGMTPAALNL  608 (626)
Q Consensus       575 gLSnE~~eKL~~~rP~TLgqAsRI~GVTPAaI~~  608 (626)
                      =+|++....+.+.+|.|+.+-..|+||++.-+.-
T Consensus        29 I~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~   62 (81)
T smart00341       29 VLPDETLIKMAAALPTNVSELLAIDGVGEEKARR   62 (81)
T ss_pred             EECHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHH
T ss_conf             5666899999998879999984689999999999


No 440
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=71.69  E-value=6.2  Score=19.07  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             889889-4268999999985899899998
Q gi|254780808|r    8 VIVIGG-GHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         8 ViVIGa-G~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      |.|||| |+=|+-.|+.++..|+-..|+=
T Consensus         3 V~IiGAaG~VG~~~a~~l~~~~~~~el~L   31 (309)
T cd05294           3 VSIIGASGRVGSATALLLAKEDVVKEINL   31 (309)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999997699999999983799875999


No 441
>KOG1800 consensus
Probab=71.55  E-value=6.5  Score=18.89  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Q ss_conf             78898894268999999985--899899998076
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAK--LGASTALITHKT   38 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar--~G~~v~L~~~~~   38 (626)
                      -|-|||+|-||-=+|.-+-+  -++.|.++|-.|
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~P   55 (468)
T KOG1800          22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLP   55 (468)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             5999888836889999997258997067541577


No 442
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.52  E-value=5.3  Score=19.57  Aligned_cols=69  Identities=17%  Similarity=0.384  Sum_probs=37.2

Q ss_pred             HHHHHHCCEEEECCHHHHCC-CCHHHHHHHHH-HHCCCE-EEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             54340010011000121102-35456567765-403341-56621330433466666677899999874203
Q gi|254780808|r  326 IPGLEKVNIIRPGYAIEYDY-INPKELFPTLE-TKKISG-LFLAGQINGTTGYEEAAAQGLVAGINSARKSN  394 (626)
Q Consensus       326 IPGLEnAef~R~Gy~ieyd~-~~P~~L~~tLe-~k~~~~-LffAGQI~GteGYeEAAAqGl~AGiNa~~~~~  394 (626)
                      +||..|.+=+=-..++-.-. +++......|+ ++-.|+ +=+-|.++|++=|--|-|+=.-|-+.|-....
T Consensus       271 L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V~~~~gv~~iNDSKaTN~~a~~~Al~~~~  342 (450)
T PRK01368        271 LQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALD  342 (450)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEEECCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf             575658999999999999809977777876424677001468999989999971788789999999985689


No 443
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=71.51  E-value=5.5  Score=19.43  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             987635788988942689999999858998999980762601
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      ||+    |-+||-|.-|..=|..+.+.|.+|..|.-+++...
T Consensus         1 M~~----Ig~IGlG~MG~~ma~~L~~~g~~v~v~d~~~~~~~   38 (163)
T pfam03446         1 MAK----IGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVE   38 (163)
T ss_pred             CCE----EEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             988----99983679899999999977996999979788779


No 444
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=71.37  E-value=7.5  Score=18.49  Aligned_cols=23  Identities=17%  Similarity=0.029  Sum_probs=9.9

Q ss_pred             HHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             99999858998999980762601
Q gi|254780808|r   20 AAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus        20 AA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      +++........-..++-.++.+.
T Consensus        26 ~~f~~~gl~~~Y~~~~v~~~~l~   48 (275)
T PRK00258         26 AAAKQLGLDGEYLAFLVPLDDLE   48 (275)
T ss_pred             HHHHHCCCCCEEEEEECCHHHHH
T ss_conf             99998699938998878888999


No 445
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=71.11  E-value=5.7  Score=19.33  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898894268999999985899899998
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALIT   35 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~   35 (626)
                      |.|||+|+=|+-.|+.++..|+- .|+=
T Consensus         1 V~IIGaG~VG~~~a~~l~~~~~~-el~L   27 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVL   27 (300)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCC-EEEE
T ss_conf             98989688899999999857996-7999


No 446
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.06  E-value=7.6  Score=18.44  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=28.2

Q ss_pred             EEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             88988942689--9999998589989999807626012
Q gi|254780808|r    8 VIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         8 ViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      |+||=|+-.|+  +.|.++|+.|.+|.|+--+.+.+.+
T Consensus        10 vVvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~   47 (338)
T PRK07109         10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEG   47 (338)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             89994843499999999999879989999899999999


No 447
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.92  E-value=7.4  Score=18.52  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894-268999999985899899998076260
Q gi|254780808|r    8 VIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ++|.||+ ==|-+.|..+|+.|++|.+.-.+.+..
T Consensus        10 alVTGgs~GIG~a~A~~la~~Ga~V~i~~~~~~~~   44 (262)
T PRK13394         10 AVVTGAASGIGKEIALELARAGAAVAIADLNQDGA   44 (262)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             99958577899999999998799999997988999


No 448
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=70.66  E-value=7.1  Score=18.65  Aligned_cols=32  Identities=31%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCC--EEEEECCHH
Q ss_conf             88988942689999999858998--999980762
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAS--TALITHKTS   39 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~~   39 (626)
                      |.|||+|+=|+-.|+.++..|.-  ..|+..+++
T Consensus         3 I~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~   36 (306)
T cd05291           3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             9999969889999999985799877999818987


No 449
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.59  E-value=6  Score=19.14  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             78898894268999999985899899998076
Q gi|254780808|r    7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         7 dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      .++|+|.|-.|.-+|-.+.++|++|..+..+.
T Consensus         9 ~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~   40 (448)
T PRK03803          9 LRIVVGLGKSGMSLVRFLARQGYQFAVTDTRE   40 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             58999989999999999997889599991899


No 450
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=70.56  E-value=7.7  Score=18.37  Aligned_cols=37  Identities=32%  Similarity=0.460  Sum_probs=27.6

Q ss_pred             CCCCCCC--EEEE-CC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9876357--8898-89-426899999998589989999807
Q gi|254780808|r    1 MINRSYD--VIVI-GG-GHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         1 m~~~~~d--ViVI-Ga-G~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      ||++++.  |++| || +-=|-+.|.++|+.|++|.+.-.+
T Consensus         1 mM~~~l~gKvalITGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (260)
T PRK12823          1 MMNQRFAGKVAVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             98888799989994886789999999999879999999694


No 451
>PRK06720 hypothetical protein; Provisional
Probab=70.54  E-value=7.8  Score=18.36  Aligned_cols=78  Identities=21%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             EEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             889889426--899999998589989999807626012466700221122489999986303999999886314887307
Q gi|254780808|r    8 VIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVLNV   85 (626)
Q Consensus         8 ViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~   85 (626)
                      |+||=||=.  |-+.|.++|+.|++|.+.-.+.+...              .+..|+..+|+..      .         
T Consensus        18 valITGa~~GIG~a~A~~la~~Ga~Vvi~d~~~~~~~--------------~~~~~i~~~g~~a------~---------   68 (169)
T PRK06720         18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ--------------ATVEEITNLGGEA------L---------   68 (169)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHH--------------HHHHHHHHCCCCE------E---------
T ss_conf             9999897548999999999986998999527636599--------------9999999749953------7---------


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             87855534678784999999999999708996898
Q gi|254780808|r   86 KKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        86 skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                          ++.. .. .|++...+.+.+.++.+-.|++.
T Consensus        69 ----~~~~-Dv-s~~~~v~~~i~~~~~~~g~iDiL   97 (169)
T PRK06720         69 ----FVSY-DM-EKQGDWQRVISITLNAFSRIDML   97 (169)
T ss_pred             ----EEEC-CC-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             ----8975-88-99999999999999975989989


No 452
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=70.49  E-value=7.5  Score=18.45  Aligned_cols=40  Identities=23%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCE--EEEECCHHHCCC
Q ss_conf             9876357889889426899999998589989--999807626012
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGAST--ALITHKTSTIGS   43 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v--~L~~~~~~~~ae   43 (626)
                      |+++   |.|||-||=|.==|.++-+.|...  .-+..+.+++..
T Consensus         5 ~f~~---I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~   46 (307)
T PRK07502          5 LFDR---VALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRAR   46 (307)
T ss_pred             CCCE---EEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf             4566---89992787999999999854998579998499999999


No 453
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.35  E-value=6.2  Score=19.06  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=40.1

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             987635788988942689999999858998999980762601246
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      |-+++.||=|||-|-=|.-=|.-+++.|.+|..|.-.++.+.+++
T Consensus         1 m~~~~~~IGiIGLGvMG~nmA~Nl~~~G~~V~vynrt~~k~~~~~   45 (474)
T PTZ00142          1 MDEGESDIGLIGLAVMGQNLSLNMYSRGFKVSVYNRTTEKVEEFM   45 (474)
T ss_pred             CCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf             997767466873638679999999978987999779879999999


No 454
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=70.06  E-value=6.7  Score=18.82  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHCCCCC
Q ss_conf             8898894268999999985899--8999980762601246
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGA--STALITHKTSTIGSMS   45 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~--~v~L~~~~~~~~ael~   45 (626)
                      |+|||+|.-|+-++..|++.+.  ++.+...+.++...++
T Consensus         1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~   40 (384)
T pfam03435         1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALA   40 (384)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf             9898977879999999972899886999989889989877


No 455
>PRK07776 consensus
Probab=70.02  E-value=7.9  Score=18.29  Aligned_cols=42  Identities=19%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             CCCCCCC--EEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             9876357--889889426--89999999858998999980762601
Q gi|254780808|r    1 MINRSYD--VIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         1 m~~~~~d--ViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      ||+-+++  |++|-||--  |-+.|.++|+.|++|.+.-.+.+.+.
T Consensus         1 ~m~~~L~gKv~lITG~~~GIG~aiA~~la~~Ga~V~i~~~~~~~l~   46 (252)
T PRK07776          1 MTSLDLTGRTAIVTGASRGIGLAIAQALAAAGANVVITARKQEALD   46 (252)
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             9988999998999477879999999999987998999979889999


No 456
>PRK07831 short chain dehydrogenase; Provisional
Probab=69.90  E-value=8  Score=18.27  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             EEEECCC-H-HHHHHHHHHHHCCCCEEEEECCHHHCCCCC
Q ss_conf             8898894-2-689999999858998999980762601246
Q gi|254780808|r    8 VIVIGGG-H-AGCEAAAVAAKLGASTALITHKTSTIGSMS   45 (626)
Q Consensus         8 ViVIGaG-~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~   45 (626)
                      ++|.||+ . =|-+.|..+|+.|++|.+.-.+.+.+.|..
T Consensus        19 alVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~   58 (261)
T PRK07831         19 VVVTAAAGTGIGSATARRALEEGADVVISDIHERRLGETA   58 (261)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf             9994999647899999999987998999808777789999


No 457
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=69.70  E-value=7.4  Score=18.49  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC
Q ss_conf             889889426899999998589989999807626012466700221
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG   52 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg   52 (626)
                      |-|||||-=|-.=|.++.++|++|..+..+++.-|.-+|.-.+-|
T Consensus        10 IGIlGgGQLgrMla~aA~~lG~~v~vldp~~~~PA~~va~~~~~~   54 (377)
T PRK06019         10 IGIIGGGQLGRMLALAAAPLGYKVIVLDPDADCPAAQVADRVIVA   54 (377)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEEC
T ss_conf             999878689999999999789989998489849847837848986


No 458
>KOG2017 consensus
Probab=69.58  E-value=4  Score=20.42  Aligned_cols=30  Identities=33%  Similarity=0.534  Sum_probs=26.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             635788988942689999999858998999
Q gi|254780808|r    4 RSYDVIVIGGGHAGCEAAAVAAKLGASTAL   33 (626)
Q Consensus         4 ~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L   33 (626)
                      ++-.|.|||+|=-||-||..+|-.|+-.+=
T Consensus        65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lG   94 (427)
T KOG2017          65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLG   94 (427)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHCCCCEEC
T ss_conf             776379981687788789999873778130


No 459
>KOG1201 consensus
Probab=69.52  E-value=5.8  Score=19.28  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             EEEECCCHH-HHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             889889426-8999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHA-GCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~A-G~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|-||||- |=+=|++.||+|.++.|+-.+.+..
T Consensus        41 vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~   75 (300)
T KOG1201          41 VLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN   75 (300)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCH
T ss_conf             99968986078999999997078489995565123


No 460
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=69.46  E-value=8.2  Score=18.21  Aligned_cols=21  Identities=24%  Similarity=0.134  Sum_probs=9.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             766689889999998754340
Q gi|254780808|r  310 ISTALPEEIQHQFIRTIPGLE  330 (626)
Q Consensus       310 FqTsL~~~~Q~rv~r~IPGLE  330 (626)
                      -.|.|-...+.+=.++|.||+
T Consensus       220 ~~T~ll~~A~~~G~~~i~Gl~  240 (272)
T PRK12550        220 AETPLIRYARARGKTVITGAE  240 (272)
T ss_pred             CCCHHHHHHHHCCCCEECCHH
T ss_conf             878999999988493627699


No 461
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=69.38  E-value=8.2  Score=18.20  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |.|||-||=|.=-|.++.+.|.+|.-+..+++++.
T Consensus         4 I~IiGlGLIGgSla~al~~~~~~V~g~d~~~~~~~   38 (280)
T PRK07417          4 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE   38 (280)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             99993185799999999968997999979999999


No 462
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=68.62  E-value=7.4  Score=18.50  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHCCCCCCC
Q ss_conf             5788988942689999999858998-99998076260124667
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCN   47 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~-v~L~~~~~~~~ael~Cn   47 (626)
                      -.|.|||.|--|+|.|--++-.|+. +.|+-.++-...-|..|
T Consensus        20 s~Vli~G~~glg~Ei~Knlvl~Gv~~i~i~D~~~v~~~dl~~q   62 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQ   62 (286)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCC
T ss_conf             9299999876399999999973996599995996886776347


No 463
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=67.93  E-value=8.7  Score=17.99  Aligned_cols=60  Identities=15%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCE-EEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             7849999999999997089968-98001011202588113222035863344543334664310
Q gi|254780808|r   97 QADRELYRLAMQREILSQENLD-VIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        97 qvDR~~fs~~vt~~l~~~pni~-i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
                      ++|=..|.+.+-+....  ..+ +.+.+|++|..+++.+. +.+.+|..+.+..||+|+|....
T Consensus       131 ~v~p~~~~~al~~~a~~--g~~~~~~~~V~~i~~~g~~~~-v~~~~g~~~~ad~vV~AaG~~s~  191 (381)
T TIGR03197       131 WLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEGWQ-LLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             EECHHHHHHHHHHHHHH--CCEEEECCEEEEEEEECCEEE-EEECCCCEEECCEEEECCCCCHH
T ss_conf             54789999999999972--978993625899999599899-99899988973558985542035


No 464
>PRK12743 acetoin dehydrogenase; Provisional
Probab=67.78  E-value=6.5  Score=18.90  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=25.6

Q ss_pred             CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             87635788988942-6899999998589989999807626
Q gi|254780808|r    2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTST   40 (626)
Q Consensus         2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~   40 (626)
                      |||-  ++|.||+- =|-+.|..+|+.|++|.+...+.+.
T Consensus         1 M~KV--alITGgs~GIG~a~a~~la~~Ga~V~i~~~~~~~   38 (253)
T PRK12743          1 MAQV--AIVTASDSGIGKACALLLAQQGFDIGITWHSDEE   38 (253)
T ss_pred             CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf             9998--9990758899999999999879989997489979


No 465
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.73  E-value=8.3  Score=18.16  Aligned_cols=77  Identities=21%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             EEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
Q ss_conf             88988942689--9999998589989999807626012466700221122489999986303999-99988631488730
Q gi|254780808|r    8 VIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMG-RVADAAGIQFRVLN   84 (626)
Q Consensus         8 ViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~-~~aD~~~i~~r~ln   84 (626)
                      |+||=|+=.|+  +.|..+|+.|.+|.|.--+.+.+.+              +..|++.+|+... ..+|          
T Consensus         8 vvlITGASsGIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~--------------~a~e~~~~G~~~~~v~~D----------   63 (324)
T PRK06139          8 VVVITGASSGIGRATAEAFARRGARLVLAARDEEALFE--------------VAEECRALGAEVLVVPTD----------   63 (324)
T ss_pred             EEEEECHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------------HHHHHHHCCCCEEEEECC----------
T ss_conf             79993825499999999999879989999899999999--------------999999549948999766----------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             787855534678784999999999999708996898
Q gi|254780808|r   85 VKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        85 ~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                                 + .|.+.....+.+.++.+..|+++
T Consensus        64 -----------V-sd~~~v~~~~~~~~~~~G~IDiL   87 (324)
T PRK06139         64 -----------V-THADQVQALATQAASFLGRIDVW   87 (324)
T ss_pred             -----------C-CCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             -----------7-88578999999999974998788


No 466
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an 
Probab=67.39  E-value=8.9  Score=17.92  Aligned_cols=35  Identities=34%  Similarity=0.538  Sum_probs=28.3

Q ss_pred             CCCCEEE-ECCCHHHHHHHHHHH-HCCCCEEEEECCH
Q ss_conf             6357889-889426899999998-5899899998076
Q gi|254780808|r    4 RSYDVIV-IGGGHAGCEAAAVAA-KLGASTALITHKT   38 (626)
Q Consensus         4 ~~~dViV-IGaG~AG~EAA~~~A-r~G~~v~L~~~~~   38 (626)
                      ++||+|| +-||-=-|=+|+.+. +.|.+++++|.++
T Consensus        58 ~~YDCiv~vSGGkDS~y~~~~l~~~~gl~pL~vt~d~   94 (343)
T TIGR03573        58 GRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDP   94 (343)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9886898688772899999999998299259998359


No 467
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=67.11  E-value=9.1  Score=17.88  Aligned_cols=37  Identities=27%  Similarity=0.429  Sum_probs=34.3

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             889889-4268999999985899899998076260124
Q gi|254780808|r    8 VIVIGG-GHAGCEAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         8 ViVIGa-G~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      +-|||| |+||++-+--+-+||..|+-+..++.++++.
T Consensus         3 IaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~   40 (211)
T COG2910           3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR   40 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCC
T ss_conf             78995374567999999986798048998076766522


No 468
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.89  E-value=9.1  Score=17.85  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=26.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894268999999985899899998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |.|||+|==|||.+-.+|..|+... .=.+.|++
T Consensus         2 vlvvG~GglG~e~~k~la~~Gvg~i-~ivD~d~i   34 (291)
T cd01488           2 ILVIGAGGLGCELLKNLALSGFRNI-HVIDMDTI   34 (291)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEE-EEECCCEE
T ss_conf             8999288889999999998489859-99739934


No 469
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.74  E-value=9.1  Score=17.86  Aligned_cols=34  Identities=18%  Similarity=0.317  Sum_probs=24.9

Q ss_pred             EEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8898894-268999999985899899998076260
Q gi|254780808|r    8 VIVIGGG-HAGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG-~AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ++|-||+ -=|-+.|..+|+.|++|.+.-.+.+.+
T Consensus        12 alVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~   46 (253)
T PRK05867         12 ALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL   46 (253)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             99979565999999999998699999997988999


No 470
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=66.72  E-value=7.2  Score=18.59  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |+|+|=|.-|-=.|-.+..+|++|..+|.+|
T Consensus        26 vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDP   56 (162)
T pfam00670        26 AVVCGYGDVGKGCAASLKGQGARVIVTEIDP   56 (162)
T ss_pred             EEEECCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf             9996787667779998622999899994793


No 471
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.48  E-value=8.9  Score=17.93  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      -+|+|.|-.|--||-.+.++|.+|.++..++
T Consensus         3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~   33 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND   33 (459)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999548999999999997899599998989


No 472
>PRK07102 short chain dehydrogenase; Provisional
Probab=66.11  E-value=9.5  Score=17.75  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=29.8

Q ss_pred             EEEECCCHH-HHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             889889426-8999999985899899998076260124
Q gi|254780808|r    8 VIVIGGGHA-GCEAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         8 ViVIGaG~A-G~EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      |+|.||+-- |-+-|.++|+.|.+|.|+--+.+.+.++
T Consensus         4 vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~   41 (243)
T PRK07102          4 ILIIGATSDIARACARRYAAAGARLYLAARDTERLERI   41 (243)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             99915745999999999998799899998988999999


No 473
>PRK06123 short chain dehydrogenase; Provisional
Probab=65.91  E-value=9.5  Score=17.73  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=25.8

Q ss_pred             CCCCCCCEEEECCCH--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             987635788988942--6899999998589989999807
Q gi|254780808|r    1 MINRSYDVIVIGGGH--AGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         1 m~~~~~dViVIGaG~--AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      ||||   |++|-||-  =|-+.|..+|+.|++|.+.-.+
T Consensus         1 m~nK---valITGas~GIG~aia~~la~~Ga~V~i~~~~   36 (249)
T PRK06123          1 MMRK---VMIITGASRGIGAATALLAAERGYAVCLNYLR   36 (249)
T ss_pred             CCCC---EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9998---89996868799999999999879989998089


No 474
>PRK06180 short chain dehydrogenase; Provisional
Probab=65.64  E-value=9.6  Score=17.69  Aligned_cols=42  Identities=17%  Similarity=0.151  Sum_probs=30.9

Q ss_pred             CCCCCCCEEEECCCHHHH--HHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             987635788988942689--99999985899899998076260124
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGC--EAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~--EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      |.+.+  |++|=|+-.|.  +.|.++++.|.+|.+..-+.+.+.++
T Consensus         1 M~~~K--vvlITGassGIG~aiA~~l~~~G~~Vi~~~R~~~~l~~l   44 (277)
T PRK06180          1 MASMK--TWLITGVSSGFGRALAQAALAAGHRVVGTVRSAAARRDF   44 (277)
T ss_pred             CCCCC--EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             99998--899917873999999999998799999998999999999


No 475
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.64  E-value=9.6  Score=17.69  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=29.1

Q ss_pred             CCCCCCC----EEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             9876357----889889426--8999999985899899998076260
Q gi|254780808|r    1 MINRSYD----VIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~d----ViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ||.+-||    |++|-||-.  |-..|..+|+.|++|.+.-.+.+.+
T Consensus         1 ~m~~~f~l~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~   47 (265)
T PRK07097          1 FMENMFSLKGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELV   47 (265)
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             96404198999899958576899999999998699999995998999


No 476
>PRK10637 cysG siroheme synthase; Provisional
Probab=65.59  E-value=9.6  Score=17.70  Aligned_cols=45  Identities=16%  Similarity=0.251  Sum_probs=33.4

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCCCCC
Q ss_conf             763578898894268999999985899899998076-26012466700
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT-STIGSMSCNPA   49 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~-~~~ael~Cnps   49 (626)
                      +++  |+|||||.....=+-.+.+.|..+.++.... +.+..++.+..
T Consensus        12 gk~--vLVVGGG~vA~rK~~~Ll~agA~VtViap~~~~~l~~l~~~g~   57 (457)
T PRK10637         12 DRD--CLIVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGM   57 (457)
T ss_pred             CCE--EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCC
T ss_conf             986--9998998999999999987898799989989989999986698


No 477
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=65.29  E-value=8.4  Score=18.11  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=26.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCE----EEEECCHHHC
Q ss_conf             889889426899999998589989----9998076260
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAST----ALITHKTSTI   41 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v----~L~~~~~~~~   41 (626)
                      |.|||||==|||-.=-+|-+|+.+    .+.-.+.|+|
T Consensus         2 vlvVGAGgIGCEllKnlal~G~~~~~~G~i~v~D~D~I   39 (435)
T cd01490           2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI   39 (435)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCE
T ss_conf             89993776418999999983878689880899708847


No 478
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308   Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=64.88  E-value=10  Score=17.59  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=40.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHC-CCCCCCCCCCCCC
Q ss_conf             57889889426899999998589-9899998076260-1246670022112
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTSTI-GSMSCNPAIGGLG   54 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~~~-ael~Cnps~gg~a   54 (626)
                      ..|.|=||||=|-+=+-.||... ++|.++.-|-+.| -+-.=.++++|+.
T Consensus       116 ~~v~lFGAGHVG~ALv~~La~lP~~~~~WvD~Re~~F~P~~~p~~~~~gV~  166 (270)
T TIGR02964       116 PHVVLFGAGHVGRALVRALAPLPECRVTWVDSREEEFYPEDIPLALIDGVA  166 (270)
T ss_pred             CEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCC
T ss_conf             817998677188899998616995799986371555487432202547752


No 479
>PRK07062 short chain dehydrogenase; Provisional
Probab=64.42  E-value=10  Score=17.53  Aligned_cols=41  Identities=24%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             CCCCCCC--EEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             9876357--88988942--68999999985899899998076260
Q gi|254780808|r    1 MINRSYD--VIVIGGGH--AGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~d--ViVIGaG~--AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ||+-++.  |+||=||-  =|-+.|.++|+.|++|.+.-.+.+++
T Consensus         1 mm~~~L~gK~alITG~s~GIG~a~a~~la~~Ga~Vvi~~r~~~~l   45 (265)
T PRK07062          1 MMQIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERL   45 (265)
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             997788999899957577999999999998799999997988999


No 480
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729    Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=63.94  E-value=7.6  Score=18.43  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=25.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             57889889426899999998589989999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALI   34 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~   34 (626)
                      --|-|.|=|==||.+|.-|||.|++-+.+
T Consensus        22 a~VAicGlGGLGS~~AinLAR~GigkLiL   50 (200)
T TIGR02354        22 ASVAICGLGGLGSNVAINLARAGIGKLIL   50 (200)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf             82789701611689999998730220256


No 481
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=63.91  E-value=10  Score=17.47  Aligned_cols=25  Identities=8%  Similarity=-0.039  Sum_probs=9.6

Q ss_pred             HHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             9999985899899998076260124
Q gi|254780808|r   20 AAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus        20 AA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      +++....+-..-..++..++.+...
T Consensus        30 ~~~~~~gi~~~Y~~~~v~~~~l~~~   54 (289)
T PRK12548         30 YSFQKAGLDYAYLAFDVPKEKVADA   54 (289)
T ss_pred             HHHHHCCCCCEEEEEECCHHHHHHH
T ss_conf             9999869992999787788899999


No 482
>PRK09897 hypothetical protein; Provisional
Probab=63.49  E-value=11  Score=17.42  Aligned_cols=137  Identities=13%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCC--EEEEECCH-----------HHCCCCCCC------CCCCCCC----HHHHHHHHHH
Q ss_conf             88988942689999999858998--99998076-----------260124667------0022112----2489999986
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGAS--TALITHKT-----------STIGSMSCN------PAIGGLG----KGHLVREIDA   64 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~--v~L~~~~~-----------~~~ael~Cn------ps~gg~a----kg~L~~Ei~a   64 (626)
                      |-|||||--|.=.-..+-+.+.+  +.+||..-           ++-.+|.||      |.|-.+-    +.+=...+.+
T Consensus         4 IAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e~ns~~mlaNIas~EIPpi~~t~~~WL~~q~~~~L~~   83 (535)
T PRK09897          4 IAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQR   83 (535)
T ss_pred             EEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHH
T ss_conf             79966786249999998646998269998215667789986854455888750310558851356999987388878987


Q ss_pred             HHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCCCEEEEEECCC
Q ss_conf             303999999886314887-307878555346787849999999999997089968980-010112025881132220358
Q gi|254780808|r   65 LDGLMGRVADAAGIQFRV-LNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKNIISSIVMQDN  142 (626)
Q Consensus        65 Lgg~m~~~aD~~~i~~r~-ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~~~~~v~~~~g  142 (626)
                      .|      .|.+.+|-|- |     |=+- |+. -=|+.|...+...=.+.-.|.|.. -+|+||....+.+........
T Consensus        84 ~~------id~~~l~~rqfl-----PRiL-lGe-Yl~~QF~~Lve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~~~  150 (535)
T PRK09897         84 YG------VKKETLHDRQFL-----PRIL-LGE-YFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL  150 (535)
T ss_pred             CC------CCHHHCCCCCEE-----HHHH-HHH-HHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCEEEEECCCC
T ss_conf             19------983226410100-----4888-889-9999999999999865966999757666764436995599833788


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             633445433346643
Q gi|254780808|r  143 SMIRCSTVVLTTGTF  157 (626)
Q Consensus       143 ~~~~~~~viiatGtf  157 (626)
                      ....-..+|||||-.
T Consensus       151 ~~~~FD~vVIaTGH~  165 (535)
T PRK09897        151 PSETFDLAVIATGHV  165 (535)
T ss_pred             CCCCCEEEEEECCCC
T ss_conf             764320799807987


No 483
>PRK05993 short chain dehydrogenase; Provisional
Probab=63.47  E-value=11  Score=17.42  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             CCCCCCEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             87635788988942-68999999985899899998076260124
Q gi|254780808|r    2 INRSYDVIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGSM   44 (626)
Q Consensus         2 ~~~~~dViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ael   44 (626)
                      |+|.  |+|-||+- =|-+.|.++|+.|.+|.+..-+.+.+..+
T Consensus         3 m~K~--vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l   44 (277)
T PRK05993          3 MKRS--ILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAAL   44 (277)
T ss_pred             CCCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf             9868--99925686999999999998799999997999999999


No 484
>PRK05650 short chain dehydrogenase; Provisional
Probab=63.36  E-value=11  Score=17.40  Aligned_cols=36  Identities=22%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCCC
Q ss_conf             88988942-6899999998589989999807626012
Q gi|254780808|r    8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIGS   43 (626)
Q Consensus         8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~ae   43 (626)
                      |+|-||+- =|-+-|..+|+.|++|.|...+.+.+.+
T Consensus         3 VlITGassGIG~alA~~la~~G~~V~l~~r~~~~l~~   39 (270)
T PRK05650          3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEE   39 (270)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf             9998876499999999999889989999798899999


No 485
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733   4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria.   This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=63.20  E-value=11  Score=17.38  Aligned_cols=31  Identities=29%  Similarity=0.499  Sum_probs=29.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             8898894268999999985899899998076
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      |-|||||=||-==---|-+.|+.+..+|-+.
T Consensus         5 VaIiG~GPsGLLLGQLLh~~GId~viLEr~~   35 (393)
T TIGR02360         5 VAIIGAGPSGLLLGQLLHKAGIDTVILERKS   35 (393)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9997577357899999986698589972357


No 486
>PRK08643 acetoin reductase; Validated
Probab=63.09  E-value=11  Score=17.40  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             CCCCCCEEEECCCHH--HHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             876357889889426--8999999985899899998076260
Q gi|254780808|r    2 INRSYDVIVIGGGHA--GCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         2 ~~~~~dViVIGaG~A--G~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |||   |.+|-||-.  |-+.|..+|+.|++|.+.-.+.+.+
T Consensus         1 mnK---valVTGg~~GIG~aia~~la~~Ga~V~i~d~~~~~~   39 (256)
T PRK08643          1 MSK---VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETA   39 (256)
T ss_pred             CCC---EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             984---999957578899999999998799999996988999


No 487
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=62.82  E-value=7  Score=18.67  Aligned_cols=15  Identities=13%  Similarity=0.078  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999985046
Q gi|254780808|r  604 AALNLLLIYIKKNTV  618 (626)
Q Consensus       604 AaI~~Ll~~lkk~~~  618 (626)
                      +|+++=|-+|.-+++
T Consensus       168 ~DV~vKle~Leen~v  182 (215)
T cd07659         168 QDVLEKLELLDQKHV  182 (215)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999986259


No 488
>PRK06914 short chain dehydrogenase; Provisional
Probab=62.39  E-value=11  Score=17.28  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=27.3

Q ss_pred             CCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             8763578898894268--999999985899899998076260
Q gi|254780808|r    2 INRSYDVIVIGGGHAG--CEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG--~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      |+++  |++|-||=.|  -+.|..+|+.|.+|.+.--+.+..
T Consensus         1 l~~K--~alITGassGIG~a~A~~la~~G~~V~~~~r~~~~~   40 (280)
T PRK06914          1 MNKK--IAIITGASSGFGLLTTLELAKKDYLVIATMRNLEKQ   40 (280)
T ss_pred             CCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             9519--899907344999999999998799899998988999


No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.34  E-value=8.1  Score=18.24  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEE-EEECCHHHCCC
Q ss_conf             578898894268999999985899899-99807626012
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTA-LITHKTSTIGS   43 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~-L~~~~~~~~ae   43 (626)
                      -.|+|||.|=-||=|+-+|||-|+.-. |+  .+|.+..
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlI--D~D~v~v   67 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLI--DMDDVCV   67 (263)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCCCCEEEEE--ECHHCCC
T ss_conf             948999458453999999998188818997--1201022


No 490
>KOG1346 consensus
Probab=61.83  E-value=6.6  Score=18.88  Aligned_cols=66  Identities=23%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             HHHHCCCEEEEEEEEE----------CCCHHHHHHHHHHHHHHHHHHHCC---CCCC--CCCCCCCCH--HHHHHHHHHC
Q ss_conf             6540334156621330----------433466666677899999874203---3456--546532107--9999998860
Q gi|254780808|r  355 LETKKISGLFLAGQIN----------GTTGYEEAAAQGLVAGINSARKSN---KLDC--ICFSRTDSY--IGVMIDDLTS  417 (626)
Q Consensus       355 Le~k~~~~LffAGQI~----------GteGYeEAAAqGl~AGiNa~~~~~---~~~p--~~l~R~eaY--iGVlIDDLit  417 (626)
                      -+++...|+|.||-+.          -||-.+-|--+|-+||-|.+--.+   .+..  --|+-+-+|  ||..=--|-|
T Consensus       472 aeL~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSLpT  551 (659)
T KOG1346         472 AELKARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPT  551 (659)
T ss_pred             HEEECCCCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCC
T ss_conf             20001543365042445405311100003244324502002654444568764445025368863461122000367874


Q ss_pred             CCC
Q ss_conf             787
Q gi|254780808|r  418 KGV  420 (626)
Q Consensus       418 kg~  420 (626)
                      -||
T Consensus       552 VgV  554 (659)
T KOG1346         552 VGV  554 (659)
T ss_pred             CEE
T ss_conf             145


No 491
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=61.46  E-value=11  Score=17.17  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      |.|++.|-..+.+...+-++|+++.++--++|+.+
T Consensus         4 vLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s   38 (109)
T pfam00289         4 VLVANRGEIAVRIIRALRELGIETVAVNSNPDTVS   38 (109)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCC
T ss_conf             99988879999999999986997999963344152


No 492
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=60.62  E-value=12  Score=17.07  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=25.3

Q ss_pred             EEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHCC
Q ss_conf             88988942-689999999858998999980762601
Q gi|254780808|r    8 VIVIGGGH-AGCEAAAVAAKLGASTALITHKTSTIG   42 (626)
Q Consensus         8 ViVIGaG~-AG~EAA~~~Ar~G~~v~L~~~~~~~~a   42 (626)
                      ++|.||+- =|-+.|-++|+.|++|.+.-.+.+.+.
T Consensus        17 alITGgs~GIG~~ia~~la~~Ga~V~i~~r~~~~~~   52 (259)
T PRK06124         17 ALVTGSARGLGLEIARALAEAGAHVLVNGRNAARVE   52 (259)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             999286748999999999987999999969889999


No 493
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=60.58  E-value=9.9  Score=17.62  Aligned_cols=11  Identities=18%  Similarity=0.238  Sum_probs=4.5

Q ss_pred             CCCCCCCCCCC
Q ss_conf             23564222553
Q gi|254780808|r  267 IKSYGPRYCPS  277 (626)
Q Consensus       267 ~~~~gprycPs  277 (626)
                      ..|.|.....+
T Consensus        66 ~~g~G~e~y~~   76 (392)
T PRK02201         66 TVGSGLEFYTS   76 (392)
T ss_pred             EECCCEEEECC
T ss_conf             74245188536


No 494
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.53  E-value=12  Score=17.06  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=27.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             7635788988942689999999858998999980
Q gi|254780808|r    3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH   36 (626)
Q Consensus         3 ~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~   36 (626)
                      +|+  |.|+|.|-.|--||-.|.+.|..+.+..-
T Consensus         8 gkk--v~V~GlG~sG~aaa~~L~~~g~~~~v~~~   39 (468)
T PRK04690          8 GKR--VALWGWGREGRAAYRALRAQLPAQPLTVF   39 (468)
T ss_pred             CCE--EEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             797--99983478799999999966990499972


No 495
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.48  E-value=12  Score=17.06  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             CCCCCCCEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHC
Q ss_conf             987635788988942--68999999985899899998076260
Q gi|254780808|r    1 MINRSYDVIVIGGGH--AGCEAAAVAAKLGASTALITHKTSTI   41 (626)
Q Consensus         1 m~~~~~dViVIGaG~--AG~EAA~~~Ar~G~~v~L~~~~~~~~   41 (626)
                      ||.-+=.|++|=||-  =|-+.|..+|+.|++|.+.-.+.+.+
T Consensus         1 Mm~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l   43 (254)
T PRK07478          1 MMLLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAEL   43 (254)
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             9888998799958876899999999998799999997988999


No 496
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, 
Probab=60.24  E-value=12  Score=17.03  Aligned_cols=36  Identities=33%  Similarity=0.458  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             98763578898894268999999985899899998076
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKT   38 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~   38 (626)
                      +-+++  |.|||+|--|.-+|-.+...|+.-..++-|.
T Consensus       176 l~~~~--vLviGaGem~~l~~~~L~~~g~~~i~v~nRt  211 (311)
T cd05213         176 LKGKK--VLVIGAGEMGELAAKHLAAKGVAEITIANRT  211 (311)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             21167--9998687999999999996599825997686


No 497
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=59.49  E-value=12  Score=16.94  Aligned_cols=81  Identities=15%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             CCCCCEEEE-CCCHHHHHHHH-HHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             763578898-89426899999-9985899899998076260124667002211224899999863039999998863148
Q gi|254780808|r    3 NRSYDVIVI-GGGHAGCEAAA-VAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQF   80 (626)
Q Consensus         3 ~~~~dViVI-GaG~AG~EAA~-~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~   80 (626)
                      .+.|+++++ |-|.+|-|||. .+-..|-+|+.            |||-.              .|--+..++...++++
T Consensus        53 ~~~~~~v~~~gSGT~amEaai~nl~~~gdkvLv------------~~~G~--------------FG~R~~~ia~~~g~~v  106 (368)
T PRK13479         53 EEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLV------------PDNGA--------------YGARIAKIAEYLGIAH  106 (368)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEE------------ECCCH--------------HHHHHHHHHHHHCCCE
T ss_conf             887079997168679999999615479997999------------81792--------------7999999999819975


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             8730787855534678784999999999999708996898
Q gi|254780808|r   81 RVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI  120 (626)
Q Consensus        81 r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~  120 (626)
                      .+++..-|-++..-           .+.+.|+++|.++.+
T Consensus       107 ~~l~~~~g~~~~~~-----------~ve~~L~~~~~~~~v  135 (368)
T PRK13479        107 VVLDTGEDEPPDAA-----------AVEAALAADPRITHV  135 (368)
T ss_pred             EEEECCCCCCCCHH-----------HHHHHHHHCCCCCEE
T ss_conf             99878999988999-----------999999749996789


No 498
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=59.32  E-value=12  Score=16.92  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC
Q ss_conf             876357889889426899999998589989999807626012466700
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPA   49 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps   49 (626)
                      |+    |.|||.|--|-=-|.-+|..|..|..+...++++..|-|.-|
T Consensus         1 Mk----I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~   44 (414)
T COG1004           1 MK----ITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGIS   44 (414)
T ss_pred             CC----EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC
T ss_conf             91----589888556887899998709848999578899999867999


No 499
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=58.77  E-value=13  Score=16.86  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9876357889889426899999998589989999807
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHK   37 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~   37 (626)
                      +-+++  |.|||+|--|.-+|-.+..+|++-..++-|
T Consensus       180 l~~~~--vlviGaGem~~l~~k~L~~~g~~~i~v~nR  214 (429)
T PRK00045        180 LSGKK--VLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (429)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             12065--999767489999999998559984999758


No 500
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804   Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous.   Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) .    The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction .   Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=58.77  E-value=5.2  Score=19.58  Aligned_cols=35  Identities=31%  Similarity=0.529  Sum_probs=0.0

Q ss_pred             EEEEECCHHHCCCCCC--CCCCCCC--------CHHHHHHHHHHH
Q ss_conf             9999807626012466--7002211--------224899999863
Q gi|254780808|r   31 TALITHKTSTIGSMSC--NPAIGGL--------GKGHLVREIDAL   65 (626)
Q Consensus        31 v~L~~~~~~~~ael~C--nps~gg~--------akg~L~~Ei~aL   65 (626)
                      ++++=+..=+.|-|.|  ||+|||.        ||+..+|=|.+|
T Consensus         4 ~AiVGQe~LK~ALLL~Av~P~iGGVLirG~KGTAKSTaaR~L~~L   48 (688)
T TIGR02442         4 TAIVGQEDLKLALLLNAVNPRIGGVLIRGEKGTAKSTAARGLAAL   48 (688)
T ss_pred             CCCCCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             422142798653210025266370788778886278988848761


Done!