HHsearch alignment for GI: 254780808 and conserved domain: pfam05834
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.99 E-value=5.9e-06 Score=61.82 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=81.2
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788988942689999999858--998999980762601---246670022112248999998630399999988631488
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKL--GASTALITHKTSTIG---SMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~--G~~v~L~~~~~~~~a---el~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~---fW~~~~~~~~-------~~~~~~W~~--~~v~ 68 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWS---DEFEDLGPLA-------PCVEHSWPG--YEVR 68 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEC---CCCCCCCCHH-------HHHHCEECC--EEEE
T ss_conf 989999529999999999740899819999789888889983854---5717877757-------776458796--7999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 7307878555346787849999999999997089968980010112025881132220358633445433346643
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTF 157 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtf 157 (626)
T Consensus 69 ~~~~~~~l~~~~Y-~~i~s~~f~~~~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~V~Dsr~~~ 141 (374)
T pfam05834 69 FPDGRRKLIGRGY-GRVSSDRLHEELLRRCAENGVI-RLNAKVASVDAEPV-ESLVVLEDGRTIRARLVIDARGAS 141 (374)
T ss_pred ECCCCEEECCCCC-EEEEHHHHHHHHHHHHHHCCCE-EECCEEEEEECCCC-CEEEEECCCCEEEEEEEEECCCCC
T ss_conf 2899747668870-7988899999999998657969-99137789753787-059992699587444999478766