RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] (626 letters) >gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell division [Cell division and chromosome partitioning]. Length = 621 Score = 846 bits (2187), Expect = 0.0 Identities = 334/618 (54%), Positives = 423/618 (68%), Gaps = 4/618 (0%) Query: 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64 YDVIVIGGGHAG EAA AA++GA T L+T TIG MSCNPAIGG GKGHLVREIDA Sbjct: 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDA 63 Query: 65 LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124 L GLMG+ AD AGIQFR+LN KGPAVR PR QAD+ LYR AM+ E+ +Q NL ++QGEV Sbjct: 64 LGGLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEV 123 Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183 E+ + +V D VVLTTGTFLRG IHIG AGR+G+ PS L Sbjct: 124 EDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKIHIGDTNYSAGRLGEPPSIGLS 183 Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243 + + F GRLKTGTP R+D ++I + K E+Q DE FSF T + QI C IT Sbjct: 184 DRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGDEPPPVFSFTT-EPHPPQIPCYIT 242 Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303 TN +TH II +N+ S +YSG+I+ GPRYCPSIEDKIVRF ++ HQIFLEPEGL+TD Sbjct: 243 YTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTD 302 Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363 VYPNG+ST+LPE++Q Q IR+IPGLE I+RPGYAIEYDY++P++L PTLETKKI GL Sbjct: 303 EVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGL 362 Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423 F AGQINGTTGYEEAAAQGL+AGIN+A K + R ++YIGV+IDDL +KG EP Sbjct: 363 FFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFILRRDEAYIGVLIDDLVTKGTNEP 422 Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483 YRMFTSRAEYR+ LR DNAD RLT IG +LG + + R +RF K + LKS + Sbjct: 423 YRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKSTWV 482 Query: 484 TSKNLSSTSIS-FKQDGKTR-TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541 T ++ ++ Q K R + Y+ L P+ S +L S+ P + V+E+++IE Sbjct: 483 TPSEVAKELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPADLDAEVLEQVEIEIK 542 Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601 Y Y RQ + +++K E IP+D DY +P LSNE +EKL+ ++P + QAS+I G+ Sbjct: 543 YEGYIKRQQEQIEKLKRLENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGV 602 Query: 602 TPAALNLLLIYIKKNTVK 619 TPA +++LL+Y+KK K Sbjct: 603 TPADISILLVYLKKGKNK 620 >gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]. Length = 679 Score = 707 bits (1826), Expect = 0.0 Identities = 302/629 (48%), Positives = 419/629 (66%), Gaps = 24/629 (3%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65 YDV+VIGGGHAGCEAAA AA+LGA T L+TH TIG MSCNP+ GG+GKGHL+RE+DAL Sbjct: 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL 88 Query: 66 DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125 DGL RV D +G+Q++VLN KGPAV G R Q DR+LY+ MQ+EI S NL++ +G VA Sbjct: 89 DGLCSRVCDQSGVQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVA 148 Query: 126 GFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180 E ++S +V+ D +++ +V+LTTGTFLRG I+IG PAGR+G+ PS Sbjct: 149 DLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRGQINIGLKTHPAGRIGEQPSI 208 Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQ 237 L + K F+ GRLKTGTP RL ++I + K E+Q DE IPFSF+ + + Q Sbjct: 209 GLSETLQKLGFELGRLKTGTPPRLAKESINFSKLERQIGDEPPIPFSFLNETVWIEPEDQ 268 Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297 + C +T T H I+ +N+ + GPRYCPSIE KI+RF +++ HQI+LEP Sbjct: 269 LPCYLTHTTPRVHEIVRKNLHENPHVKETTI--GPRYCPSIESKILRFPDKS-HQIWLEP 325 Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357 EGL++D++YP G+S LPEE+Q Q IR+IPGLE I++PGY +EYDY++P++L P+LET Sbjct: 326 EGLDSDLIYPQGLSNTLPEELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLET 385 Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417 KK+ GLF AGQINGTTGYEEAAAQG++AGIN++ +++ + SRT+ YIGV+IDDLT+ Sbjct: 386 KKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRASGKPPVVVSRTEGYIGVLIDDLTT 445 Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRS 476 G EPYRMFTSR+E+R+SLRPDNAD+RLTP+G K G + ++R +RF + + Sbjct: 446 LGTNEPYRMFTSRSEFRLSLRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSRLDEGIK 505 Query: 477 LLKSLVLTSK------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530 LK L+S+ ++S S K A + L + D + L PD K + Sbjct: 506 RLKEFKLSSQKWKKLIPIASIS---TSRSKPVRALDLLKFKDLDLDKLIECHPDPLKNLT 562 Query: 531 L---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587 + + ERL+IE Y ++ RQ E + ++ +E +P D DY ++ LS E +EKL + Sbjct: 563 IPRELAERLKIEGKYESFIVRQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRV 622 Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616 +P + AS+I+G+TPAA+ LL ++K N Sbjct: 623 RPQTIGAASRIQGVTPAAIIRLLRHVKTN 651 >gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. Length = 391 Score = 633 bits (1634), Expect = 0.0 Identities = 220/391 (56%), Positives = 270/391 (69%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66 DVIVIGGGHAGCEAA AA++GA LITH T TI +SCNP+IGG+ KGHLVREIDAL Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALG 60 Query: 67 GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126 GLMG+ AD GIQFR+LN KGPAVR R Q DR+LY M + + NL +IQGEV Sbjct: 61 GLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTD 120 Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186 E + +V +D + VV+ TGTFL G IHIG PAGR+G+ S L S Sbjct: 121 LIPENGKVKGVVTEDGEEYKAKAVVIATGTFLNGKIHIGLKCYPAGRLGELTSEGLSESL 180 Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246 + F+ GR KTGTP R+D +I + K E+Q D+ PFS++ + Q C +T TN Sbjct: 181 KELGFELGRFKTGTPPRIDKDSIDFSKLEEQPGDKPGPPFSYLNCPMNKEQYPCFLTYTN 240 Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306 TH II +N+ S ++ G I+ GPRYCPSIEDK VRF ++ HQ+FLEPEGL+TD Y Sbjct: 241 EATHEIIRDNLHRSPMFEGCIEGIGPRYCPSIEDKPVRFADKPYHQVFLEPEGLDTDEYY 300 Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366 G ST+LPE++Q + +RTIPGLE I+RPGYAIEYDYI+P +L PTLETKKI GLF A Sbjct: 301 LVGFSTSLPEDVQKRVLRTIPGLENAEIVRPGYAIEYDYIDPPQLLPTLETKKIPGLFFA 360 Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLD 397 GQINGT GYEEAAAQGL+AGIN+ARK+ + Sbjct: 361 GQINGTEGYEEAAAQGLLAGINAARKALGKE 391 >gnl|CDD|31399 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]. Length = 439 Score = 81.1 bits (200), Expect = 9e-16 Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367 G T L Q + R IPGLE +R G +IN PK L PTL+ KK LF AG Sbjct: 282 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAG 341 Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419 QI G GY E+AA GL+AGIN+AR + + + T + +G +++ +T G Sbjct: 342 QITGVEGYVESAASGLLAGINAARLALGEEPLIPPPT-TALGALVNYITGAG 392 Score = 51.4 bits (123), Expect = 7e-07 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 25/140 (17%) Query: 8 VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54 + VIG G AG EAA AK G L HKT + C+ ++ Sbjct: 6 INVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNA 65 Query: 55 KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114 G L E+ L L+ AD + PA G DR+ + A+ ++ + Sbjct: 66 VGLLKAEMRLLGSLIIEAADKHRV----------PA--GGALAVDRDGFSQAVTEKLENH 113 Query: 115 ENLDVIQGEVAGFNTEKNII 134 ++VI+ EV + + Sbjct: 114 PLIEVIREEVTEIPPDGITV 133 >gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]. Length = 454 Score = 52.1 bits (125), Expect = 4e-07 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62 YDV+VIG G AG AA AA+LG AL+ G+ + C P+ L ++ E Sbjct: 5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEA 64 Query: 63 DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122 G A+ I F L +K V T L L + +DVI+G Sbjct: 65 RHAAKEYGISAEVPKIDFEKLLARKD-KVVRLLTGGVEGL---------LKKNGVDVIRG 114 Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156 E A F + + +D I +++ TG+ Sbjct: 115 E-ARFVDPHTV--EVTGEDKETITADNIIIATGS 145 Score = 32.5 bits (74), Expect = 0.38 Identities = 10/27 (37%), Positives = 19/27 (70%) Query: 8 VIVIGGGHAGCEAAAVAAKLGASTALI 34 ++++GGG+ G E A+V A LG+ ++ Sbjct: 176 LVIVGGGYIGLEFASVFAALGSKVTVV 202 >gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]. Length = 396 Score = 49.0 bits (116), Expect = 4e-06 Identities = 39/156 (25%), Positives = 57/156 (36%), Gaps = 14/156 (8%) Query: 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64 YDV+++G G AG AA AK G ++ S G+ C GGL L I Sbjct: 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG-SEPGAKPCCG--GGLSPRALEELIPD 59 Query: 65 LDGLMGRVADAAGIQFR----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 D + R A I F + V G R + D+ L A + ++ Sbjct: 60 FDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAE------EAGAELY 113 Query: 121 QG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155 G V G E + + V + +R V+ G Sbjct: 114 PGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 >gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]. Length = 562 Score = 48.4 bits (115), Expect = 6e-06 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53 M +DV+VIGGG AG AA AA+ G AL++ K + A GG+ Sbjct: 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLS-KAPPKRGHTV-AAQGGI 52 >gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]. Length = 387 Score = 45.8 bits (108), Expect = 4e-05 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 17/160 (10%) Query: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63 + DV ++G G AG A A+ G L+ + A+ L + Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRAL-ERLG 59 Query: 64 ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-----------AMQREIL 112 D R+ V+ V G A+ L A+ Sbjct: 60 LWD----RLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAAR 115 Query: 113 SQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVV 151 + N+ + G EV + + ++ + D + +V Sbjct: 116 ALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLV 155 >gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. Length = 405 Score = 45.3 bits (108), Expect = 5e-05 Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 8/49 (16%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MS----CN 47 YDVIVIGGG AG AA AAK G LI +G +S CN Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKK-LGRKILISGGGRCN 48 Score = 31.8 bits (73), Expect = 0.53 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 10/47 (21%) Query: 346 INPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386 I+ K T+E+KK+ GLF AG+ ++G TG + A A G AG Sbjct: 361 ISSK----TMESKKVPGLFFAGEVLDVDGWTGGYNLQWAWASGYAAG 403 >gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 Score = 44.6 bits (106), Expect = 8e-05 Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALIT 35 DV+VIG G AG AA AA+ G A++ Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29 >gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 487 Score = 43.2 bits (101), Expect = 2e-04 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%) Query: 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-----------CNPAIG 51 YDV+VIG G G AAA+ A+ G ++ G Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYL 60 Query: 52 GLGKGHLVREIDALD 66 G L RE+ LD Sbjct: 61 MPDPGPLFRELGNLD 75 >gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function prediction only]. Length = 408 Score = 42.9 bits (101), Expect = 3e-04 Identities = 17/34 (50%), Positives = 19/34 (55%) Query: 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36 +DVI+IGGG AG AA AAK G LI Sbjct: 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDK 34 Score = 31.7 bits (72), Expect = 0.68 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 10/55 (18%) Query: 346 INPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAGINSARKSN 394 I+ K T+E+KK+ GL+ AG+ + G TG ++ A A G AG +A Sbjct: 358 IDSK----TMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWLA 408 >gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]. Length = 421 Score = 39.5 bits (92), Expect = 0.002 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVRE 61 +DV +IGGG AG + G A++ S + GS+ +G L G V + Sbjct: 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLD---LLGRLPDGQAVTD 59 Query: 62 I-DALDGL 68 I D LD L Sbjct: 60 IHDGLDAL 67 >gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 478 Score = 39.1 bits (91), Expect = 0.004 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 14/157 (8%) Query: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61 + +D +VIGGG G +A AA GA AL +G N +G + K + Sbjct: 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFG-LGGTCVN--VGCVPKKVMWYA 73 Query: 62 IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-AMQREILSQENLDVI 120 D + DA F + N + + + + D + RL + + L++ + +I Sbjct: 74 AD----YSEEMEDAKDYGFPI-NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLI 128 Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCST--VVLTTG 155 +G A F + + + + D + I + +++ TG Sbjct: 129 EGR-ARFVSPGEV--EVEVNDGTKIVYTAKHILIATG 162 >gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]. Length = 542 Score = 38.9 bits (90), Expect = 0.004 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 6/93 (6%) Query: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60 + YD +++G G AG AA + G S ++ + PA + Sbjct: 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPA------AYAFL 56 Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG 93 R ++ R L +G + G Sbjct: 57 MNGPRYDWGFRTEPEPHLRGRELAWPRGKVLGG 89 >gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy production and conversion]. Length = 506 Score = 38.4 bits (89), Expect = 0.007 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60 YDV+VIGGG G AA AA+LG TA + K T+G ++ C P+ L HL Sbjct: 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACV-EKRGTLGGTCLNVGCIPSKALLNNSHLYH 97 Query: 61 EIDALD 66 E D Sbjct: 98 EAQHED 103 >gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]. Length = 387 Score = 37.2 bits (85), Expect = 0.015 Identities = 14/46 (30%), Positives = 21/46 (45%) Query: 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50 DV++IGGG G AA A+ GA ++ + G+ N Sbjct: 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGG 49 >gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]. Length = 415 Score = 36.8 bits (84), Expect = 0.016 Identities = 16/41 (39%), Positives = 19/41 (46%) Query: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 DV+V+G G G EAA AAK G LI G + Sbjct: 135 PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 Score = 28.4 bits (62), Expect = 5.7 Identities = 8/21 (38%), Positives = 13/21 (61%) Query: 8 VIVIGGGHAGCEAAAVAAKLG 28 ++++GGG AG AA +L Sbjct: 1 IVIVGGGAAGLSAATTLRRLL 21 >gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 532 Score = 36.8 bits (85), Expect = 0.019 Identities = 15/34 (44%), Positives = 18/34 (52%) Query: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34 + +DVIVIGGG G A AA G AL+ Sbjct: 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALV 41 >gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 309 Score = 36.6 bits (85), Expect = 0.023 Identities = 13/28 (46%), Positives = 16/28 (57%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALI 34 DV+VIGGG G A A+ G S L+ Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLL 28 >gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]. Length = 520 Score = 36.4 bits (84), Expect = 0.023 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 47/160 (29%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65 YDV+V+GGG AG AA AA+ G T L+ + Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---------------------------- 243 Query: 66 DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125 G+V D GI+ N P GP+ A E + Q ++DV+ + A Sbjct: 244 --FGGQVLDTMGIE----NFISVPETEGPKLAAALE--------AHVKQYDVDVMNLQRA 289 Query: 126 G----FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161 E +I + + + ++++ TV+L TG R + Sbjct: 290 SKLEPAAVEGGLI-EVELANGAVLKARTVILATGARWRNM 328 >gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 503 Score = 36.5 bits (84), Expect = 0.024 Identities = 16/29 (55%), Positives = 18/29 (62%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 YD+IVIGGG G A AA LGA A + Sbjct: 20 YDLIVIGGGSGGLACAKEAADLGAKVACL 48 >gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 305 Score = 36.0 bits (83), Expect = 0.032 Identities = 18/47 (38%), Positives = 23/47 (48%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52 YDVI+IGGG AG AA AA+ G LI G ++ + Sbjct: 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVEN 50 Score = 28.0 bits (62), Expect = 8.2 Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALIT 35 DV+VIGGG + E A +K+ L+ Sbjct: 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVH 173 >gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme transport and metabolism]. Length = 561 Score = 35.7 bits (82), Expect = 0.033 Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35 YD +VIGGGH G AAA A+ G S A++ Sbjct: 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLE 44 >gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]. Length = 642 Score = 35.3 bits (81), Expect = 0.045 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 13/78 (16%) Query: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-------HKTSTIGSMSCNPAIGGLG 54 ++ +YD +V+G G AG AA A+LG TA+IT H + G + N A+G +G Sbjct: 52 VDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGI--NAALGNMG 109 Query: 55 ----KGHLVREIDALDGL 68 + H+ + D L Sbjct: 110 NDNWRWHMYDTVKGSDWL 127 >gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 Score = 34.9 bits (81), Expect = 0.068 Identities = 12/27 (44%), Positives = 19/27 (70%) Query: 8 VIVIGGGHAGCEAAAVAAKLGASTALI 34 V+V+GGG+ G E A+ AKLG+ ++ Sbjct: 2 VVVVGGGYIGLEFASALAKLGSKVTVV 28 >gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]. Length = 623 Score = 34.5 bits (79), Expect = 0.097 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%) Query: 2 INRSYDVIVIGGGHAGCEAAAVAAKL 27 ++ SYD IV+GGG AGC +AA+L Sbjct: 54 LDSSYDYIVVGGGTAGC---VLAARL 76 >gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]. Length = 622 Score = 34.2 bits (78), Expect = 0.10 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 V+VIGGG AG AA A +G L+ K +IG Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLV-EKEPSIG 160 >gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]. Length = 856 Score = 33.8 bits (77), Expect = 0.15 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 DV+VIGGG GC A AK G A++ ++ Sbjct: 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS 72 >gnl|CDD|144743 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases. Length = 150 Score = 33.3 bits (77), Expect = 0.21 Identities = 14/22 (63%), Positives = 15/22 (68%) Query: 8 VIVIGGGHAGCEAAAVAAKLGA 29 V+VIGGG G AAA A LGA Sbjct: 23 VVVIGGGVVGLGAAATAKGLGA 44 >gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis [Coenzyme metabolism]. Length = 262 Score = 32.5 bits (74), Expect = 0.34 Identities = 15/38 (39%), Positives = 20/38 (52%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 DVI++G G +G AA AK G A+ K S G + Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 >gnl|CDD|31030 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism]. Length = 371 Score = 31.8 bits (72), Expect = 0.60 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALI 34 V+V+GGG G AA +A LGA ++ Sbjct: 170 KVVVLGGGVVGTNAAKIAIGLGADVTIL 197 >gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]. Length = 443 Score = 31.6 bits (71), Expect = 0.61 Identities = 12/42 (28%), Positives = 18/42 (42%) Query: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 + DV +IG G +G AA + G +I K +G Sbjct: 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 Score = 29.7 bits (66), Expect = 2.9 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 11/88 (12%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCN----------PAIGGLGK 55 V+VIG G + + A A++GAS T + A+ Sbjct: 177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWA 236 Query: 56 GHLVREIDALDGLMGRVADAAGIQFRVL 83 R +DAL G + RV Sbjct: 237 LRRGRVLDALLPGAGYLPAFPAPDKRVE 264 >gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative thiamine biosynthetic enzyme. Length = 229 Score = 31.6 bits (72), Expect = 0.62 Identities = 14/38 (36%), Positives = 19/38 (50%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 DV+++G G +G AA AK G A+I S G Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGA 56 >gnl|CDD|37975 KOG2764, KOG2764, KOG2764, Putative transcriptional regulator DJ-1 [General function prediction only, Defense mechanisms]. Length = 247 Score = 31.8 bits (72), Expect = 0.63 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI----GGLGKG 56 YDVI++ GG G E + K+ I ++ P GL G Sbjct: 68 YDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGG 122 >gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only]. Length = 486 Score = 31.4 bits (71), Expect = 0.70 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 12/98 (12%) Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--------YAIEYDYINPKELFPTLE 356 V P +S ALP+ + I + L+KV PG Y +E + + + Sbjct: 389 VTPGDLSLALPDRVVEDLIEALENLDKVI---PGVASDDTLLYGVETKFYSVRIKVDEDL 445 Query: 357 TKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARKS 393 + I GL+ AG G G AAA G+ A ARK Sbjct: 446 STSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKY 483 >gnl|CDD|37550 KOG2339, KOG2339, KOG2339, Uncharacterized conserved protein [Function unknown]. Length = 624 Score = 31.5 bits (71), Expect = 0.74 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 20/139 (14%) Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530 + F+R K L+L+ S F +D + + + + PD DAR Sbjct: 151 HQFIREKFKGLLLSVTKGSGQFKPFAKDNRKKRSRKRTEKPDKP--------RDARGAEH 202 Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590 E + EA + + + P Y+ K+K ++ Sbjct: 203 WSRETADYCHFTLYKENKDTSEALGLIAKLLNVPPSGVRYA-------GTKDKRAVTT-- 253 Query: 591 NLLQASKIEGMTPAALNLL 609 Q + +TP L L Sbjct: 254 ---QRVSVRKVTPERLLAL 269 >gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning]. Length = 1174 Score = 31.1 bits (70), Expect = 0.96 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 384 VAGINSARKSNKLDCICF----SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439 + G+N + KSN LD ICF + + +L K + +S+ Sbjct: 30 ITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYK------NGQAGITKASVSVVF 83 Query: 440 DNADNRLTPIGM 451 DN D +P+G Sbjct: 84 DNTDKARSPLGY 95 >gnl|CDD|107351 cd06356, PBP1_Amide_Urea_BP_like, Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis. Length = 334 Score = 30.8 bits (70), Expect = 1.0 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 21/90 (23%) Query: 37 KTSTIGSMSCNPAIGGLGKGHL----VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92 K ++ S N A+ G K H V EI+A G++GR + +++ Sbjct: 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGILGR-------EVELVD-------- 45 Query: 93 GPRTQADRELYRLAMQREILSQENLDVIQG 122 TQ+D E Y+ QR + Q+ +DV+ G Sbjct: 46 -YDTQSDNERYQQYAQR-LALQDKVDVVWG 73 >gnl|CDD|29367 cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .. Length = 284 Score = 30.6 bits (69), Expect = 1.1 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34 + D VIGGG+A AA A+LG LI Sbjct: 27 VATDYAVIGGGNAA-NAAVAVARLGGQARLI 56 >gnl|CDD|30712 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]. Length = 238 Score = 30.7 bits (69), Expect = 1.2 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 28/133 (21%) Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSA 261 +L + W K DER++P D +N G+ R NL H I Sbjct: 52 VKLPQGQLDWSKVTIFNLDERVVPPD---DPESNY----GLMRRNLFDHIDIPA----EF 100 Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGER---------NGHQIFLEPEG--------LNTDV 304 I++GD E K+ G +GH L P + Sbjct: 101 IHNGDASDPDAECAARYEAKLPSAGGFDLILLGMGEDGHIASLFPGTPALDSATTEEANS 160 Query: 305 VYPNGISTALPEE 317 G S +P+E Sbjct: 161 RVFVGDSPKVPKE 173 >gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 680 Score = 30.7 bits (69), Expect = 1.2 Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 +DV++IGGG G A AA G TAL+ Sbjct: 68 FDVLIIGGGATGAGCALDAATRGLKTALV 96 >gnl|CDD|30503 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]. Length = 475 Score = 30.3 bits (68), Expect = 1.4 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 21/112 (18%) Query: 13 GGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCN------PAIGGLGKGHLVREI 62 GG +G AAAVAA L + + T GS+ + P G + + +V Sbjct: 155 GGSSGGSAAAVAAGL----VPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLA 210 Query: 63 DALD--GLMGR-VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111 +LD G + R V DAA +L+V GP R + +++ Sbjct: 211 SSLDQIGPLARTVRDAA----LLLDVIAGPDPRDSPLPPPPPVPPALAGKDL 258 >gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion, General function prediction only]. Length = 420 Score = 29.9 bits (67), Expect = 2.2 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 16/191 (8%) Query: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREI 62 + V+++GGG G A + G ++ + G S N A+ G R + Sbjct: 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGW------RAL 54 Query: 63 DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVI 120 A+ + GI + G + + + + Y L + R L QE L Sbjct: 55 KAIG--LKEQIREQGIPLGGRVLIHGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEA 112 Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180 +S ++ ++ + V L+ GT ++ G L I Sbjct: 113 LPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVK-----GDLLIGCDGAYSKVRK 167 Query: 181 SLFNSFMKFDF 191 L ++D Sbjct: 168 WLGFKEPRYDG 178 >gnl|CDD|32471 COG2317, COG2317, Zn-dependent carboxypeptidase [Amino acid transport and metabolism]. Length = 497 Score = 29.4 bits (66), Expect = 3.0 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 13/84 (15%) Query: 521 ICPDARKFSSLVIERLQIESSYAAYTG--RQMI--EAKE--------IKFE-EKRLIPKD 567 I P RK ++ ++ Y A +I EA E +++E EK LI + Sbjct: 315 IYPLLRKHFPEQFDKYSLDDFYRAVNRVEPSLIRVEADELTYPLHIILRYEIEKELISGE 374 Query: 568 FDYSSLPALSNELKEKLSILKPFN 591 LP L N+ E+ ++P N Sbjct: 375 LKVDDLPELWNDKMEEYLGIRPKN 398 >gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 251 Score = 28.6 bits (64), Expect = 4.8 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 384 VAGINSARKSNKLDCICF----SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439 + G+N + KSN LD ICF + + + DL K R + +++ Sbjct: 30 ITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYK------RGQAGITKASVTIVF 83 Query: 440 DNADNRLTPIGM 451 DN+D +PIG Sbjct: 84 DNSDKSQSPIGF 95 >gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is involved in FAD binding in a number of enzymes. Length = 349 Score = 28.4 bits (64), Expect = 6.0 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSC 46 DV+++GGG AG A + A+ G L+ H T+++ + Sbjct: 2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAG 43 >gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]. Length = 552 Score = 28.4 bits (63), Expect = 6.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALI 34 DVIV+G G AG AAA A G ++ Sbjct: 6 ADVIVVGAGLAGLVAAAELADAGKRVLIL 34 >gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. Length = 332 Score = 28.1 bits (63), Expect = 7.6 Identities = 14/41 (34%), Positives = 18/41 (43%) Query: 8 VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48 VI +GGG A AVAA L +I T+ +P Sbjct: 82 VIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTAATGSEVSP 122 >gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]. Length = 374 Score = 27.9 bits (62), Expect = 7.8 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 5 SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42 +D +++G G +G A VAA+LG LI K + IG Sbjct: 1 MFDYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNHIG 37 >gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport and metabolism]. Length = 509 Score = 28.0 bits (62), Expect = 8.1 Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLG 28 DVI++G G AG A AK G Sbjct: 46 ADVIIVGAGVAGSALAYALAKDG 68 >gnl|CDD|176297 cd01221, PH_ephexin, Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. Length = 125 Score = 27.9 bits (62), Expect = 9.5 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 21/104 (20%) Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534 R L+K LT +S ++ K RT Y F LF+ L+I Sbjct: 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLF----------LFNDL--------LLIT 42 Query: 535 RLQIESSYAA--YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576 + ++ S++ Y R + ++I+ + + IP + P L Sbjct: 43 KKKLGSTFVVFDYAPRSFLRVEKIEPDNQ-KIPLGSNLVGRPNL 85 >gnl|CDD|146048 pfam03223, V-ATPase_C, V-ATPase subunit C. Length = 371 Score = 27.6 bits (62), Expect = 9.9 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLS 585 K EK+ I +DF YS LS E K + + Sbjct: 240 KCREKKFIVRDFKYS--EELSEEEKRERT 266 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.389 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 7,292,889 Number of extensions: 395446 Number of successful extensions: 1062 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1048 Number of HSP's successfully gapped: 70 Length of query: 626 Length of database: 6,263,737 Length adjustment: 100 Effective length of query: 526 Effective length of database: 4,102,837 Effective search space: 2158092262 Effective search space used: 2158092262 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (26.9 bits)