RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780808|ref|YP_003065221.1| tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA [Candidatus
Liberibacter asiaticus str. psy62]
         (626 letters)



>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell
           division [Cell division and chromosome partitioning].
          Length = 621

 Score =  846 bits (2187), Expect = 0.0
 Identities = 334/618 (54%), Positives = 423/618 (68%), Gaps = 4/618 (0%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDVIVIGGGHAG EAA  AA++GA T L+T    TIG MSCNPAIGG GKGHLVREIDA
Sbjct: 4   EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDA 63

Query: 65  LDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEV 124
           L GLMG+ AD AGIQFR+LN  KGPAVR PR QAD+ LYR AM+ E+ +Q NL ++QGEV
Sbjct: 64  LGGLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEV 123

Query: 125 AGFNTEKN-IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLF 183
                E+   +  +V  D        VVLTTGTFLRG IHIG     AGR+G+ PS  L 
Sbjct: 124 EDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKIHIGDTNYSAGRLGEPPSIGLS 183

Query: 184 NSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGIT 243
           +   +  F  GRLKTGTP R+D ++I + K E+Q  DE    FSF T +    QI C IT
Sbjct: 184 DRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGDEPPPVFSFTT-EPHPPQIPCYIT 242

Query: 244 RTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTD 303
            TN +TH II +N+  S +YSG+I+  GPRYCPSIEDKIVRF ++  HQIFLEPEGL+TD
Sbjct: 243 YTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTD 302

Query: 304 VVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGL 363
            VYPNG+ST+LPE++Q Q IR+IPGLE   I+RPGYAIEYDY++P++L PTLETKKI GL
Sbjct: 303 EVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGL 362

Query: 364 FLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGVLEP 423
           F AGQINGTTGYEEAAAQGL+AGIN+A K    +     R ++YIGV+IDDL +KG  EP
Sbjct: 363 FFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFILRRDEAYIGVLIDDLVTKGTNEP 422

Query: 424 YRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKSLVL 483
           YRMFTSRAEYR+ LR DNAD RLT IG +LG + + R +RF K  +        LKS  +
Sbjct: 423 YRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKSTWV 482

Query: 484 TSKNLSSTSIS-FKQDGKTR-TAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIESS 541
           T   ++   ++   Q  K R + Y+ L  P+ S  +L S+ P      + V+E+++IE  
Sbjct: 483 TPSEVAKELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPADLDAEVLEQVEIEIK 542

Query: 542 YAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEGM 601
           Y  Y  RQ  + +++K  E   IP+D DY  +P LSNE +EKL+ ++P  + QAS+I G+
Sbjct: 543 YEGYIKRQQEQIEKLKRLENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGV 602

Query: 602 TPAALNLLLIYIKKNTVK 619
           TPA +++LL+Y+KK   K
Sbjct: 603 TPADISILLVYLKKGKNK 620


>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
           involved in translation [Translation, ribosomal
           structure and biogenesis].
          Length = 679

 Score =  707 bits (1826), Expect = 0.0
 Identities = 302/629 (48%), Positives = 419/629 (66%), Gaps = 24/629 (3%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+VIGGGHAGCEAAA AA+LGA T L+TH   TIG MSCNP+ GG+GKGHL+RE+DAL
Sbjct: 29  YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL 88

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
           DGL  RV D +G+Q++VLN  KGPAV G R Q DR+LY+  MQ+EI S  NL++ +G VA
Sbjct: 89  DGLCSRVCDQSGVQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVA 148

Query: 126 GFNTEKN-----IISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
               E       ++S +V+ D +++   +V+LTTGTFLRG I+IG    PAGR+G+ PS 
Sbjct: 149 DLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRGQINIGLKTHPAGRIGEQPSI 208

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKI---TNRQ 237
            L  +  K  F+ GRLKTGTP RL  ++I + K E+Q  DE  IPFSF+ + +      Q
Sbjct: 209 GLSETLQKLGFELGRLKTGTPPRLAKESINFSKLERQIGDEPPIPFSFLNETVWIEPEDQ 268

Query: 238 IECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEP 297
           + C +T T    H I+ +N+  +          GPRYCPSIE KI+RF +++ HQI+LEP
Sbjct: 269 LPCYLTHTTPRVHEIVRKNLHENPHVKETTI--GPRYCPSIESKILRFPDKS-HQIWLEP 325

Query: 298 EGLNTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLET 357
           EGL++D++YP G+S  LPEE+Q Q IR+IPGLE   I++PGY +EYDY++P++L P+LET
Sbjct: 326 EGLDSDLIYPQGLSNTLPEELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLET 385

Query: 358 KKISGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTS 417
           KK+ GLF AGQINGTTGYEEAAAQG++AGIN++ +++    +  SRT+ YIGV+IDDLT+
Sbjct: 386 KKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRASGKPPVVVSRTEGYIGVLIDDLTT 445

Query: 418 KGVLEPYRMFTSRAEYRISLRPDNADNRLTPIGMK-LGCIGERRQKRFAKYIQEYNFLRS 476
            G  EPYRMFTSR+E+R+SLRPDNAD+RLTP+G K  G + ++R +RF +     +    
Sbjct: 446 LGTNEPYRMFTSRSEFRLSLRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSRLDEGIK 505

Query: 477 LLKSLVLTSK------NLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
            LK   L+S+       ++S S       K   A + L + D  +  L    PD  K  +
Sbjct: 506 RLKEFKLSSQKWKKLIPIASIS---TSRSKPVRALDLLKFKDLDLDKLIECHPDPLKNLT 562

Query: 531 L---VIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSIL 587
           +   + ERL+IE  Y ++  RQ  E + ++ +E   +P D DY ++  LS E +EKL  +
Sbjct: 563 IPRELAERLKIEGKYESFIVRQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRV 622

Query: 588 KPFNLLQASKIEGMTPAALNLLLIYIKKN 616
           +P  +  AS+I+G+TPAA+  LL ++K N
Sbjct: 623 RPQTIGAASRIQGVTPAAIIRLLRHVKTN 651


>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. 
          Length = 391

 Score =  633 bits (1634), Expect = 0.0
 Identities = 220/391 (56%), Positives = 270/391 (69%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALD 66
           DVIVIGGGHAGCEAA  AA++GA   LITH T TI  +SCNP+IGG+ KGHLVREIDAL 
Sbjct: 1   DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALG 60

Query: 67  GLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAG 126
           GLMG+ AD  GIQFR+LN  KGPAVR  R Q DR+LY   M   + +  NL +IQGEV  
Sbjct: 61  GLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTD 120

Query: 127 FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSNSLFNSF 186
              E   +  +V +D    +   VV+ TGTFL G IHIG    PAGR+G+  S  L  S 
Sbjct: 121 LIPENGKVKGVVTEDGEEYKAKAVVIATGTFLNGKIHIGLKCYPAGRLGELTSEGLSESL 180

Query: 187 MKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTN 246
            +  F+ GR KTGTP R+D  +I + K E+Q  D+   PFS++   +   Q  C +T TN
Sbjct: 181 KELGFELGRFKTGTPPRIDKDSIDFSKLEEQPGDKPGPPFSYLNCPMNKEQYPCFLTYTN 240

Query: 247 LETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNTDVVY 306
             TH II +N+  S ++ G I+  GPRYCPSIEDK VRF ++  HQ+FLEPEGL+TD  Y
Sbjct: 241 EATHEIIRDNLHRSPMFEGCIEGIGPRYCPSIEDKPVRFADKPYHQVFLEPEGLDTDEYY 300

Query: 307 PNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLA 366
             G ST+LPE++Q + +RTIPGLE   I+RPGYAIEYDYI+P +L PTLETKKI GLF A
Sbjct: 301 LVGFSTSLPEDVQKRVLRTIPGLENAEIVRPGYAIEYDYIDPPQLLPTLETKKIPGLFFA 360

Query: 367 GQINGTTGYEEAAAQGLVAGINSARKSNKLD 397
           GQINGT GYEEAAAQGL+AGIN+ARK+   +
Sbjct: 361 GQINGTEGYEEAAAQGLLAGINAARKALGKE 391


>gnl|CDD|31399 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in
           translation [Translation, ribosomal structure and
           biogenesis].
          Length = 439

 Score = 81.1 bits (200), Expect = 9e-16
 Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 309 GISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYIN-PKELFPTLETKKISGLFLAG 367
           G  T L    Q +  R IPGLE    +R G      +IN PK L PTL+ KK   LF AG
Sbjct: 282 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAG 341

Query: 368 QINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKG 419
           QI G  GY E+AA GL+AGIN+AR +   + +    T + +G +++ +T  G
Sbjct: 342 QITGVEGYVESAASGLLAGINAARLALGEEPLIPPPT-TALGALVNYITGAG 392



 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 25/140 (17%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI---------THKTSTIGSMSCNPAIGGL----G 54
           + VIG G AG EAA   AK G    L           HKT     + C+ ++        
Sbjct: 6   INVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNA 65

Query: 55  KGHLVREIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQ 114
            G L  E+  L  L+   AD   +          PA  G     DR+ +  A+  ++ + 
Sbjct: 66  VGLLKAEMRLLGSLIIEAADKHRV----------PA--GGALAVDRDGFSQAVTEKLENH 113

Query: 115 ENLDVIQGEVAGFNTEKNII 134
             ++VI+ EV     +   +
Sbjct: 114 PLIEVIREEVTEIPPDGITV 133


>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Energy production and conversion].
          Length = 454

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MSCNPAIGGLGKGHLVREI 62
           YDV+VIG G AG  AA  AA+LG   AL+       G+   + C P+   L    ++ E 
Sbjct: 5   YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEA 64

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG 122
                  G  A+   I F  L  +K   V    T     L         L +  +DVI+G
Sbjct: 65  RHAAKEYGISAEVPKIDFEKLLARKD-KVVRLLTGGVEGL---------LKKNGVDVIRG 114

Query: 123 EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGT 156
           E A F     +   +  +D   I    +++ TG+
Sbjct: 115 E-ARFVDPHTV--EVTGEDKETITADNIIIATGS 145



 Score = 32.5 bits (74), Expect = 0.38
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALI 34
           ++++GGG+ G E A+V A LG+   ++
Sbjct: 176 LVIVGGGYIGLEFASVFAALGSKVTVV 202


>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
           and conversion].
          Length = 396

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 39/156 (25%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDA 64
            YDV+++G G AG  AA   AK G    ++    S  G+  C    GGL    L   I  
Sbjct: 3   EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG-SEPGAKPCCG--GGLSPRALEELIPD 59

Query: 65  LDGLMGRVADAAGIQFR----VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
            D  + R    A I F      + V  G      R + D+ L   A       +   ++ 
Sbjct: 60  FDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAE------EAGAELY 113

Query: 121 QG-EVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTG 155
            G  V G   E + +   V   +  +R   V+   G
Sbjct: 114 PGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149


>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
          flavoprotein subunit [Energy production and
          conversion].
          Length = 562

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGL 53
          M    +DV+VIGGG AG  AA  AA+ G   AL++ K       +   A GG+
Sbjct: 2  MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLS-KAPPKRGHTV-AAQGGI 52


>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
           FAD-dependent oxidoreductases [Coenzyme metabolism /
           Energy production and conversion].
          Length = 387

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 17/160 (10%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREID 63
           +  DV ++G G AG   A   A+ G    L+      +       A+       L   + 
Sbjct: 1   KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRAL-ERLG 59

Query: 64  ALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-----------AMQREIL 112
             D    R+         V+ V  G         A+     L           A+     
Sbjct: 60  LWD----RLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAAR 115

Query: 113 SQENLDVIQG-EVAGFNTEKNIISSIVMQDNSMIRCSTVV 151
           +  N+ +  G EV     + + ++  +  D   +    +V
Sbjct: 116 ALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLV 155


>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. 
          Length = 405

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS---MS----CN 47
          YDVIVIGGG AG  AA  AAK G    LI      +G    +S    CN
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKK-LGRKILISGGGRCN 48



 Score = 31.8 bits (73), Expect = 0.53
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 10/47 (21%)

Query: 346 INPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAG 386
           I+ K    T+E+KK+ GLF AG+   ++G TG    + A A G  AG
Sbjct: 361 ISSK----TMESKKVPGLFFAGEVLDVDGWTGGYNLQWAWASGYAAG 403


>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain.  This family
          includes members that bind FAD. This family includes
          the flavoprotein subunits from succinate and fumarate
          dehydrogenase, aspartate oxidase and the alpha subunit
          of adenylylsulphate reductase.
          Length = 401

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
          DV+VIG G AG  AA  AA+ G   A++ 
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29


>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
          [Secondary metabolites biosynthesis, transport, and
          catabolism].
          Length = 487

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMS-----------CNPAIG 51
             YDV+VIG G  G  AAA+ A+ G    ++       G                    
Sbjct: 1  MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYL 60

Query: 52 GLGKGHLVREIDALD 66
              G L RE+  LD
Sbjct: 61 MPDPGPLFRELGNLD 75


>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
          prediction only].
          Length = 408

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 19/34 (55%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITH 36
             +DVI+IGGG AG  AA  AAK G    LI  
Sbjct: 1  MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDK 34



 Score = 31.7 bits (72), Expect = 0.68
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 10/55 (18%)

Query: 346 INPKELFPTLETKKISGLFLAGQ---INGTTG---YEEAAAQGLVAGINSARKSN 394
           I+ K    T+E+KK+ GL+ AG+   + G TG   ++ A A G  AG  +A    
Sbjct: 358 IDSK----TMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWLA 408


>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
          [Amino acid transport and metabolism].
          Length = 421

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTI----GSMSCNPAIGGLGKGHLVRE 61
          +DV +IGGG AG        + G   A++    S +    GS+     +G L  G  V +
Sbjct: 3  FDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLD---LLGRLPDGQAVTD 59

Query: 62 I-DALDGL 68
          I D LD L
Sbjct: 60 IHDGLDAL 67


>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
           oxidoreductase [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 478

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 14/157 (8%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
             + +D +VIGGG  G  +A  AA  GA  AL       +G    N  +G + K  +   
Sbjct: 17  DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFG-LGGTCVN--VGCVPKKVMWYA 73

Query: 62  IDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRL-AMQREILSQENLDVI 120
            D        + DA    F + N +     +  + + D  + RL  + +  L++  + +I
Sbjct: 74  AD----YSEEMEDAKDYGFPI-NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLI 128

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCST--VVLTTG 155
           +G  A F +   +   + + D + I  +   +++ TG
Sbjct: 129 EGR-ARFVSPGEV--EVEVNDGTKIVYTAKHILIATG 162


>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
          [Amino acid transport and metabolism].
          Length = 542

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           +   YD +++G G AG   AA  +  G S  ++         +   PA       +   
Sbjct: 3  EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPA------AYAFL 56

Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRG 93
                    R      ++ R L   +G  + G
Sbjct: 57 MNGPRYDWGFRTEPEPHLRGRELAWPRGKVLGG 89


>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
           production and conversion].
          Length = 506

 Score = 38.4 bits (89), Expect = 0.007
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 5   SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG----SMSCNPAIGGLGKGHLVR 60
            YDV+VIGGG  G  AA  AA+LG  TA +  K  T+G    ++ C P+   L   HL  
Sbjct: 39  DYDVVVIGGGPGGYVAAIKAAQLGLKTACV-EKRGTLGGTCLNVGCIPSKALLNNSHLYH 97

Query: 61  EIDALD 66
           E    D
Sbjct: 98  EAQHED 103


>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
          acid transport and metabolism].
          Length = 387

 Score = 37.2 bits (85), Expect = 0.015
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI 50
            DV++IGGG  G  AA   A+ GA   ++    +  G+   N   
Sbjct: 4  KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGG 49


>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
           [General function prediction only].
          Length = 415

 Score = 36.8 bits (84), Expect = 0.016
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
              DV+V+G G  G EAA  AAK G    LI       G +
Sbjct: 135 PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175



 Score = 28.4 bits (62), Expect = 5.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 8  VIVIGGGHAGCEAAAVAAKLG 28
          ++++GGG AG  AA    +L 
Sbjct: 1  IVIVGGGAAGLSAATTLRRLL 21


>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
          production and conversion].
          Length = 532

 Score = 36.8 bits (85), Expect = 0.019
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +    +DVIVIGGG  G   A  AA  G   AL+
Sbjct: 8  LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALV 41


>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase.  This family
          includes various FAD dependent oxidoreductases:
          Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
          Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
          oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
          Length = 309

 Score = 36.6 bits (85), Expect = 0.023
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALI 34
          DV+VIGGG  G   A   A+ G S  L+
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLL 28


>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 520

 Score = 36.4 bits (84), Expect = 0.023
 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 47/160 (29%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDAL 65
           YDV+V+GGG AG  AA  AA+ G  T L+  +                            
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---------------------------- 243

Query: 66  DGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVA 125
               G+V D  GI+    N    P   GP+  A  E          + Q ++DV+  + A
Sbjct: 244 --FGGQVLDTMGIE----NFISVPETEGPKLAAALE--------AHVKQYDVDVMNLQRA 289

Query: 126 G----FNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGV 161
                   E  +I  + + + ++++  TV+L TG   R +
Sbjct: 290 SKLEPAAVEGGLI-EVELANGAVLKARTVILATGARWRNM 328


>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase
          [Posttranslational modification, protein turnover,
          chaperones].
          Length = 503

 Score = 36.5 bits (84), Expect = 0.024
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          YD+IVIGGG  G   A  AA LGA  A +
Sbjct: 20 YDLIVIGGGSGGLACAKEAADLGAKVACL 48


>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
          modification, protein turnover, chaperones].
          Length = 305

 Score = 36.0 bits (83), Expect = 0.032
 Identities = 18/47 (38%), Positives = 23/47 (48%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGG 52
          YDVI+IGGG AG  AA  AA+ G    LI       G ++    +  
Sbjct: 4  YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVEN 50



 Score = 28.0 bits (62), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           DV+VIGGG +  E A   +K+     L+ 
Sbjct: 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVH 173


>gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme
          transport and metabolism].
          Length = 561

 Score = 35.7 bits (82), Expect = 0.033
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
           YD +VIGGGH G  AAA  A+ G S A++ 
Sbjct: 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLE 44


>gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein
           subunit [Energy production and conversion].
          Length = 642

 Score = 35.3 bits (81), Expect = 0.045
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 13/78 (16%)

Query: 2   INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT-------HKTSTIGSMSCNPAIGGLG 54
           ++ +YD +V+G G AG  AA   A+LG  TA+IT       H  +  G +  N A+G +G
Sbjct: 52  VDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGI--NAALGNMG 109

Query: 55  ----KGHLVREIDALDGL 68
               + H+   +   D L
Sbjct: 110 NDNWRWHMYDTVKGSDWL 127


>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
          oxidoreductase.  This family includes both class I and
          class II oxidoreductases and also NADH oxidases and
          peroxidases. This domain is actually a small NADH
          binding domain within a larger FAD binding domain.
          Length = 82

 Score = 34.9 bits (81), Expect = 0.068
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGASTALI 34
          V+V+GGG+ G E A+  AKLG+   ++
Sbjct: 2  VVVVGGGYIGLEFASALAKLGSKVTVV 28


>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
          dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
          family) [General function prediction only].
          Length = 623

 Score = 34.5 bits (79), Expect = 0.097
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKL 27
          ++ SYD IV+GGG AGC    +AA+L
Sbjct: 54 LDSSYDYIVVGGGTAGC---VLAARL 76


>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
           polyferredoxins [Energy production and conversion].
          Length = 622

 Score = 34.2 bits (78), Expect = 0.10
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
            V+VIGGG AG  AA   A +G    L+  K  +IG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLV-EKEPSIG 160


>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase
          precursor [Amino acid transport and metabolism].
          Length = 856

 Score = 33.8 bits (77), Expect = 0.15
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          DV+VIGGG  GC  A   AK G   A++  ++
Sbjct: 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS 72


>gnl|CDD|144743 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
          domain.  This family now also contains the lysine
          2-oxoglutarate reductases.
          Length = 150

 Score = 33.3 bits (77), Expect = 0.21
 Identities = 14/22 (63%), Positives = 15/22 (68%)

Query: 8  VIVIGGGHAGCEAAAVAAKLGA 29
          V+VIGGG  G  AAA A  LGA
Sbjct: 23 VVVIGGGVVGLGAAATAKGLGA 44


>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
          [Coenzyme metabolism].
          Length = 262

 Score = 32.5 bits (74), Expect = 0.34
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          DVI++G G +G  AA   AK G   A+   K S  G +
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69


>gnl|CDD|31030 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
           metabolism].
          Length = 371

 Score = 31.8 bits (72), Expect = 0.60
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALI 34
            V+V+GGG  G  AA +A  LGA   ++
Sbjct: 170 KVVVLGGGVVGTNAAKIAIGLGADVTIL 197


>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
          [Inorganic ion transport and metabolism].
          Length = 443

 Score = 31.6 bits (71), Expect = 0.61
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 1  MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +    DV +IG G +G  AA    + G    +I  K   +G
Sbjct: 4  GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45



 Score = 29.7 bits (66), Expect = 2.9
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGAS-TALITHKTSTIGSMSCN----------PAIGGLGK 55
            V+VIG G +  + A   A++GAS T         +                 A+     
Sbjct: 177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWA 236

Query: 56  GHLVREIDALDGLMGRVADAAGIQFRVL 83
               R +DAL    G +        RV 
Sbjct: 237 LRRGRVLDALLPGAGYLPAFPAPDKRVE 264


>gnl|CDD|145231 pfam01946, Thi4, Thi4 family.  This family includes a putative
          thiamine biosynthetic enzyme.
          Length = 229

 Score = 31.6 bits (72), Expect = 0.62
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 7  DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          DV+++G G +G  AA   AK G   A+I    S  G  
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGA 56


>gnl|CDD|37975 KOG2764, KOG2764, KOG2764, Putative transcriptional regulator DJ-1
           [General function prediction only, Defense mechanisms].
          Length = 247

 Score = 31.8 bits (72), Expect = 0.63
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 6   YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAI----GGLGKG 56
           YDVI++ GG  G E  +   K+             I ++   P       GL  G
Sbjct: 68  YDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGG 122


>gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
           [General function prediction only].
          Length = 486

 Score = 31.4 bits (71), Expect = 0.70
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 12/98 (12%)

Query: 305 VYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPG--------YAIEYDYINPKELFPTLE 356
           V P  +S ALP+ +    I  +  L+KV    PG        Y +E  + + +       
Sbjct: 389 VTPGDLSLALPDRVVEDLIEALENLDKVI---PGVASDDTLLYGVETKFYSVRIKVDEDL 445

Query: 357 TKKISGLFLAGQINGTT-GYEEAAAQGLVAGINSARKS 393
           +  I GL+ AG   G   G   AAA G+ A    ARK 
Sbjct: 446 STSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKY 483


>gnl|CDD|37550 KOG2339, KOG2339, KOG2339, Uncharacterized conserved protein
           [Function unknown].
          Length = 624

 Score = 31.5 bits (71), Expect = 0.74
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 20/139 (14%)

Query: 471 YNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSS 530
           + F+R   K L+L+    S     F +D + + + +    PD           DAR    
Sbjct: 151 HQFIREKFKGLLLSVTKGSGQFKPFAKDNRKKRSRKRTEKPDKP--------RDARGAEH 202

Query: 531 LVIERLQIESSYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPF 590
              E             +   EA  +  +   + P    Y+         K+K ++    
Sbjct: 203 WSRETADYCHFTLYKENKDTSEALGLIAKLLNVPPSGVRYA-------GTKDKRAVTT-- 253

Query: 591 NLLQASKIEGMTPAALNLL 609
              Q   +  +TP  L  L
Sbjct: 254 ---QRVSVRKVTPERLLAL 269


>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
           protein 2 (chromosome condensation complex Condensin,
           subunit E) [Chromatin structure and dynamics, Cell cycle
           control, cell division, chromosome partitioning].
          Length = 1174

 Score = 31.1 bits (70), Expect = 0.96
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 384 VAGINSARKSNKLDCICF----SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           + G+N + KSN LD ICF    +         + +L  K             +  +S+  
Sbjct: 30  ITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYK------NGQAGITKASVSVVF 83

Query: 440 DNADNRLTPIGM 451
           DN D   +P+G 
Sbjct: 84  DNTDKARSPLGY 95


>gnl|CDD|107351 cd06356, PBP1_Amide_Urea_BP_like, Periplasmic component (FmdD) of
           an active transport system for short-chain amides and
           urea (FmdDEF).  This group includes the type I
           periplasmic-binding proteins that are predicted to have
           a function similar to that of an active transport system
           for short chain amides and/or urea in bacteria and
           Archaea, by sequence comparison and phylogenetic
           analysis.
          Length = 334

 Score = 30.8 bits (70), Expect = 1.0
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 21/90 (23%)

Query: 37  KTSTIGSMSCNPAIGGLGKGHL----VREIDALDGLMGRVADAAGIQFRVLNVKKGPAVR 92
           K  ++   S N A+ G  K H     V EI+A  G++GR       +  +++        
Sbjct: 1   KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGILGR-------EVELVD-------- 45

Query: 93  GPRTQADRELYRLAMQREILSQENLDVIQG 122
              TQ+D E Y+   QR +  Q+ +DV+ G
Sbjct: 46  -YDTQSDNERYQQYAQR-LALQDKVDVVWG 73


>gnl|CDD|29367 cd01945, ribokinase_group_B, Ribokinase-like subgroup B.  Found
          in bacteria and plants, this subgroup is part of the
          ribokinase/pfkB superfamily.  Its oligomerization state
          is unknown at this time. ..
          Length = 284

 Score = 30.6 bits (69), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 4  RSYDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           + D  VIGGG+A   AA   A+LG    LI
Sbjct: 27 VATDYAVIGGGNAA-NAAVAVARLGGQARLI 56


>gnl|CDD|30712 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
           isomerase/deaminase [Carbohydrate transport and
           metabolism].
          Length = 238

 Score = 30.7 bits (69), Expect = 1.2
 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 28/133 (21%)

Query: 202 ARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIECGITRTNLETHRIIMENIKHSA 261
            +L    + W K      DER++P     D  +N     G+ R NL  H  I        
Sbjct: 52  VKLPQGQLDWSKVTIFNLDERVVPPD---DPESNY----GLMRRNLFDHIDIPA----EF 100

Query: 262 IYSGDIKSYGPRYCPSIEDKIVRFGER---------NGHQIFLEPEG--------LNTDV 304
           I++GD            E K+   G           +GH   L P             + 
Sbjct: 101 IHNGDASDPDAECAARYEAKLPSAGGFDLILLGMGEDGHIASLFPGTPALDSATTEEANS 160

Query: 305 VYPNGISTALPEE 317
               G S  +P+E
Sbjct: 161 RVFVGDSPKVPKE 173


>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
          [Energy production and conversion].
          Length = 680

 Score = 30.7 bits (69), Expect = 1.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
          +DV++IGGG  G   A  AA  G  TAL+
Sbjct: 68 FDVLIIGGGATGAGCALDAATRGLKTALV 96


>gnl|CDD|30503 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
           and related amidases [Translation, ribosomal structure
           and biogenesis].
          Length = 475

 Score = 30.3 bits (68), Expect = 1.4
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 21/112 (18%)

Query: 13  GGHAGCEAAAVAAKLGASTALITHKTSTIGSM----SCN------PAIGGLGKGHLVREI 62
           GG +G  AAAVAA L      +   + T GS+    +        P  G + +  +V   
Sbjct: 155 GGSSGGSAAAVAAGL----VPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLA 210

Query: 63  DALD--GLMGR-VADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREI 111
            +LD  G + R V DAA     +L+V  GP  R         +      +++
Sbjct: 211 SSLDQIGPLARTVRDAA----LLLDVIAGPDPRDSPLPPPPPVPPALAGKDL 258


>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
           flavoprotein monooxygenases [Energy production and
           conversion, General function prediction only].
          Length = 420

 Score = 29.9 bits (67), Expect = 2.2
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS-MSCNPAIGGLGKGHLVREI 62
           +   V+++GGG  G   A    + G    ++  +    G   S N A+ G       R +
Sbjct: 1   KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGW------RAL 54

Query: 63  DALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQ--ADRELYRLAMQREILSQENLDVI 120
            A+   +       GI      +  G + +        + + Y L + R  L QE L   
Sbjct: 55  KAIG--LKEQIREQGIPLGGRVLIHGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEA 112

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
                         +S  ++  ++ +   V L+ GT ++     G L I           
Sbjct: 113 LPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVK-----GDLLIGCDGAYSKVRK 167

Query: 181 SLFNSFMKFDF 191
            L     ++D 
Sbjct: 168 WLGFKEPRYDG 178


>gnl|CDD|32471 COG2317, COG2317, Zn-dependent carboxypeptidase [Amino acid
           transport and metabolism].
          Length = 497

 Score = 29.4 bits (66), Expect = 3.0
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 521 ICPDARKFSSLVIERLQIESSYAAYTG--RQMI--EAKE--------IKFE-EKRLIPKD 567
           I P  RK      ++  ++  Y A       +I  EA E        +++E EK LI  +
Sbjct: 315 IYPLLRKHFPEQFDKYSLDDFYRAVNRVEPSLIRVEADELTYPLHIILRYEIEKELISGE 374

Query: 568 FDYSSLPALSNELKEKLSILKPFN 591
                LP L N+  E+   ++P N
Sbjct: 375 LKVDDLPELWNDKMEEYLGIRPKN 398


>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 251

 Score = 28.6 bits (64), Expect = 4.8
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 384 VAGINSARKSNKLDCICF----SRTDSYIGVMIDDLTSKGVLEPYRMFTSRAEYRISLRP 439
           + G+N + KSN LD ICF    +   +     + DL  K      R      +  +++  
Sbjct: 30  ITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYK------RGQAGITKASVTIVF 83

Query: 440 DNADNRLTPIGM 451
           DN+D   +PIG 
Sbjct: 84  DNSDKSQSPIGF 95


>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain.  This domain is
          involved in FAD binding in a number of enzymes.
          Length = 349

 Score = 28.4 bits (64), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTSTIGSMSC 46
           DV+++GGG AG   A + A+ G    L+  H T+++   + 
Sbjct: 2  TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAG 43


>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
          prediction only].
          Length = 552

 Score = 28.4 bits (63), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALI 34
           DVIV+G G AG  AAA  A  G    ++
Sbjct: 6  ADVIVVGAGLAGLVAAAELADAGKRVLIL 34


>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
           iron-containing alcohol dehydrogenases (Fe-ADH).
           Dehydroquinate synthase-like. This superfamily divides
           into two subgroups: the dehydroquinate synthase-like,
           and a large metal-containing  alcohol dehydrogenases
           (ADH), known as iron-containing alcohol dehydrogenases.
           Dehydroquinate synthase (DHQS) catalyzes the conversion
           of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
           dehydroquinate (DHQ) in the second step of the shikimate
           pathway. This pathway involves seven sequential
           enzymatic steps in the conversion of erythrose
           4-phosphate and phosphoenolpyruvate into chorismate for
           subsequent synthesis of aromatic compounds.
           Dehydroquinate synthase-like group includes
           dehydroquinate synthase, 2-deoxy-scyllo-inosose
           synthase, and 2-epi-5-epi-valiolone synthase. The
           alcohol dehydrogenases in this superfamily contain a
           dehydroquinate synthase-like protein structural fold and
           mostly contain iron. They are distinct from other
           alcohol dehydrogenases which contains different protein
           domains. There are several distinct families of alcohol
           dehydrogenases: Zinc-containing long-chain alcohol
           dehydrogenases; insect-type, or short-chain alcohol
           dehydrogenases; iron-containing alcohol dehydrogenases,
           and others. The iron-containing family has a Rossmann
           fold-like topology that resembles the fold of the
           zinc-dependent alcohol dehydrogenases, but lacks
           sequence homology, and differs in strand arrangement.
           ADH catalyzes the reversible oxidation of alcohol to
           acetaldehyde with the simultaneous reduction of NAD(P)+
           to NAD(P)H.
          Length = 332

 Score = 28.1 bits (63), Expect = 7.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 8   VIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP 48
           VI +GGG     A AVAA L     +I   T+       +P
Sbjct: 82  VIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTAATGSEVSP 122


>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
          biogenesis, outer membrane].
          Length = 374

 Score = 27.9 bits (62), Expect = 7.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 5  SYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIG 42
           +D +++G G +G   A VAA+LG    LI  K + IG
Sbjct: 1  MFDYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNHIG 37


>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid
          transport and metabolism].
          Length = 509

 Score = 28.0 bits (62), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLG 28
           DVI++G G AG   A   AK G
Sbjct: 46 ADVIIVGAGVAGSALAYALAKDG 68


>gnl|CDD|176297 cd01221, PH_ephexin, Ephexin Pleckstrin homology (PH) domain.
           Ephexin Pleckstrin homology (PH) domain. Ephexin
           contains a RhoGEF (DH) followed by a PH domain and an
           SH3 domain. The ephexin PH domain is believed to act
           with the DH domain in mediating protein-protein
           interactions with the Eph receptor. PH domains share
           little sequence conservation, but all have a common
           fold, which is electrostatically polarized. PH domains
           also have diverse functions. They are often involved in
           targeting proteins to the plasma membrane, but few
           display strong specificity in lipid binding.  Any
           specificity is usually determined by loop regions or
           insertions in the N-terminus of the domain, which are
           not conserved across all PH domains.
          Length = 125

 Score = 27.9 bits (62), Expect = 9.5
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 475 RSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIE 534
           R L+K   LT      +S   ++  K RT Y F          LF+          L+I 
Sbjct: 1   RWLVKRGELTQLEERGSSNILRKKLKARTIYLF----------LFNDL--------LLIT 42

Query: 535 RLQIESSYAA--YTGRQMIEAKEIKFEEKRLIPKDFDYSSLPAL 576
           + ++ S++    Y  R  +  ++I+ + +  IP   +    P L
Sbjct: 43  KKKLGSTFVVFDYAPRSFLRVEKIEPDNQ-KIPLGSNLVGRPNL 85


>gnl|CDD|146048 pfam03223, V-ATPase_C, V-ATPase subunit C. 
          Length = 371

 Score = 27.6 bits (62), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 557 KFEEKRLIPKDFDYSSLPALSNELKEKLS 585
           K  EK+ I +DF YS    LS E K + +
Sbjct: 240 KCREKKFIVRDFKYS--EELSEEEKRERT 266


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,292,889
Number of extensions: 395446
Number of successful extensions: 1062
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1048
Number of HSP's successfully gapped: 70
Length of query: 626
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 526
Effective length of database: 4,102,837
Effective search space: 2158092262
Effective search space used: 2158092262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)