BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780808|ref|YP_003065221.1| tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA [Candidatus
Liberibacter asiaticus str. psy62]
         (626 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 1286 bits (3328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/626 (100%), Positives = 626/626 (100%)

Query: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
           MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR
Sbjct: 1   MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60

Query: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
           EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI
Sbjct: 61  EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120

Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
           QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN
Sbjct: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180

Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
           SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC
Sbjct: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240

Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
           GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL
Sbjct: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300

Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
           NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI
Sbjct: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360

Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
           SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420

Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
           LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS
Sbjct: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480

Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
           LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES
Sbjct: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540

Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
           SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG
Sbjct: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600

Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
           MTPAALNLLLIYIKKNTVKLNEIVLV
Sbjct: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 384

 Score = 33.9 bits (76), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
          +DVI+IG G AG  AA  AAK G  TAL++ ++
Sbjct: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 481

 Score = 33.5 bits (75), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
          ++R YD+I+IG G AG  AA  AA+LG   A++ +  + +G +  N   G +    L+R 
Sbjct: 1  MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY--AGLGGICLN--WGCIPTKSLLRS 56

Query: 62 IDALD 66
           + LD
Sbjct: 57 AEILD 61


>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 461

 Score = 32.0 bits (71), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTAL 33
          YD++VIG G +G  +A +AA+LG   A+
Sbjct: 5  YDLVVIGAGSSGVRSARLAAQLGKKVAI 32



 Score = 28.1 bits (61), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
           ++IGGG+   E A +   LG+ T L+T   S +
Sbjct: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 466

 Score = 28.5 bits (62), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 6  YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
          YDV V+GGG AG   A  AA+L    A+I  K  T G    N
Sbjct: 3  YDVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLN 43



 Score = 25.8 bits (55), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 7   DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
           +++VIG G  G E  +V  +LG+   +I H  + +  M
Sbjct: 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM 213


>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 321

 Score = 28.1 bits (61), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 4   RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
           ++ DVIV+GGG+   E A   AK+ A    I H+ S++ S
Sbjct: 145 KNKDVIVVGGGNTAAEEALHLAKI-ARRVTIVHRRSSLRS 183


>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 26.6 bits (57), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
           LG +GERR+ R   ++   N  R     L+L  + +++  I  ++         ++S+  
Sbjct: 134 LGIVGERREDRVGIWVVRLNKTRD--NQLLLIEEKIAAIGIRIRK---------WISFHG 182

Query: 513 FSIQNLFSICPDARKFSSLV 532
            S+    +I PD   ++ +V
Sbjct: 183 LSL----NISPDLSYYTGIV 198


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 311

 Score = 25.4 bits (54), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 3  NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
          +RS  V ++G  +AG ++  V   +GA  +++THK  T  S+
Sbjct: 20 SRSGCVALVGATNAG-KSTLVNRFVGAKVSIVTHKVQTTRSI 60


>gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 124

 Score = 25.0 bits (53), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 54 GKGHLVREIDALDGLMGRVADAAGIQFRVL 83
          G+GH ++E   +    GRV D  G+++RV+
Sbjct: 70 GEGHNLQEHSVVMLCGGRVKDLPGVKYRVI 99


>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 24.3 bits (51), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 142 NSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNSFMK 188
           N +I C+  +      L G++  IGK  +P   M     +SL NSF K
Sbjct: 169 NKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNK 216


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,433
Number of Sequences: 1233
Number of extensions: 15913
Number of successful extensions: 59
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 16
length of query: 626
length of database: 328,796
effective HSP length: 79
effective length of query: 547
effective length of database: 231,389
effective search space: 126569783
effective search space used: 126569783
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)