BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] (626 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 626/626 (100%), Positives = 626/626 (100%) Query: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR Sbjct: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60 Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI Sbjct: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120 Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN Sbjct: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180 Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC Sbjct: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240 Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL Sbjct: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300 Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI Sbjct: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360 Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420 Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS Sbjct: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480 Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES Sbjct: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540 Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG Sbjct: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600 Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626 MTPAALNLLLIYIKKNTVKLNEIVLV Sbjct: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 33.9 bits (76), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38 +DVI+IG G AG AA AAK G TAL++ ++ Sbjct: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 33.5 bits (75), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61 ++R YD+I+IG G AG AA AA+LG A++ + + +G + N G + L+R Sbjct: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY--AGLGGICLN--WGCIPTKSLLRS 56 Query: 62 IDALD 66 + LD Sbjct: 57 AEILD 61 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 32.0 bits (71), Expect = 0.031, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTAL 33 YD++VIG G +G +A +AA+LG A+ Sbjct: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI 32 Score = 28.1 bits (61), Expect = 0.46, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 9 IVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 ++IGGG+ E A + LG+ T L+T S + Sbjct: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 28.5 bits (62), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47 YDV V+GGG AG A AA+L A+I K T G N Sbjct: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLN 43 Score = 25.8 bits (55), Expect = 2.3, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 +++VIG G G E +V +LG+ +I H + + M Sbjct: 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM 213 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 28.1 bits (61), Expect = 0.46, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43 ++ DVIV+GGG+ E A AK+ A I H+ S++ S Sbjct: 145 KNKDVIVVGGGNTAAEEALHLAKI-ARRVTIVHRRSSLRS 183 >gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 15/80 (18%) Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512 LG +GERR+ R ++ N R L+L + +++ I ++ ++S+ Sbjct: 134 LGIVGERREDRVGIWVVRLNKTRD--NQLLLIEEKIAAIGIRIRK---------WISFHG 182 Query: 513 FSIQNLFSICPDARKFSSLV 532 S+ +I PD ++ +V Sbjct: 183 LSL----NISPDLSYYTGIV 198 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 25.4 bits (54), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44 +RS V ++G +AG ++ V +GA +++THK T S+ Sbjct: 20 SRSGCVALVGATNAG-KSTLVNRFVGAKVSIVTHKVQTTRSI 60 >gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str. psy62] Length = 124 Score = 25.0 bits (53), Expect = 4.1, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 54 GKGHLVREIDALDGLMGRVADAAGIQFRVL 83 G+GH ++E + GRV D G+++RV+ Sbjct: 70 GEGHNLQEHSVVMLCGGRVKDLPGVKYRVI 99 >gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 24.3 bits (51), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 142 NSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNSFMK 188 N +I C+ + L G++ IGK +P M +SL NSF K Sbjct: 169 NKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNK 216 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.389 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 381,433 Number of Sequences: 1233 Number of extensions: 15913 Number of successful extensions: 59 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 16 length of query: 626 length of database: 328,796 effective HSP length: 79 effective length of query: 547 effective length of database: 231,389 effective search space: 126569783 effective search space used: 126569783 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)