HHsearch alignment for GI: 254780809 and conserved domain: COG1100

Probab=98.94  E-value=3.4e-09  Score=83.56  Aligned_cols=103  Identities=24%  Similarity=0.339  Sum_probs=72.9

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHH------CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf             3024311466318889999855200------0234546872110001245683589995081000241035666678889
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDV------AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF  293 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~------aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~  293 (440)
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~Dt~gq~~~~--------~~~~   72 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-----NIKLQLWDTAGQEEYR--------SLRP   72 (219)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCC-----CEEEEEEECCCHHHHH--------HHHH
T ss_conf             79999999999889999999647676556761454043203622666-----0026767679869999--------9887


Q ss_pred             HHHHHHCCEEECCCCCCHH--------HH---HHHC--CCCCCCCCCCCCCCCCC
Q ss_conf             9850301102013589856--------63---4312--89853222233344654
Q gi|254780809|r  294 LEVENADLILLLKEINSKK--------EI---SFPK--NIDFIFIGTKSDLYSTY  335 (440)
Q Consensus       294 ~~i~~aDlil~v~D~~~~~--------~~---~~~~--~~~~i~V~NK~Dl~~~~  335 (440)
T Consensus        73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf             5043897899999762056578899999999987466886799969761055430