HHsearch alignment for GI: 254780809 and conserved domain: COG5256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis].
Probab=98.47 E-value=1.6e-07 Score=71.99 Aligned_cols=108 Identities=28% Similarity=0.326 Sum_probs=76.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCH------------------------HCCCCC------CCCCCEEECCCCCCCCCEE
Q ss_conf 2302431146631888999985520------------------------002345------4687211000124568358
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKD------------------------VAIVTD------IPGTTRDVLTIDLDLEGYL 268 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~------------------------~aIVs~------~~GTTRD~i~~~~~i~g~~ 268 (440)
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCE
T ss_conf 12899983787870344556577737979899999999998619771689998538866786666899777886437705
Q ss_pred EEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH---------------HHHCC-CCCCCCCCCCCCC
Q ss_conf 9995081000241035666678889985030110201358985663---------------43128-9853222233344
Q gi|254780809|r 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI---------------SFPKN-IDFIFIGTKSDLY 332 (440)
Q Consensus 269 ~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~---------------~~~~~-~~~i~V~NK~Dl~ 332 (440)
T Consensus 87 ~tIiDaPGHrdF--------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 87 FTIIDAPGHRDF--------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred EEEEECCCHHHH--------HHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 899607846778--------987631331336799999888983101436587516789999856975699999715666
Q ss_pred CC
Q ss_conf 65
Q gi|254780809|r 333 ST 334 (440)
Q Consensus 333 ~~ 334 (440)
T Consensus 159 ~w 160 (428)
T COG5256 159 SW 160 (428)
T ss_pred CC
T ss_conf 62