HHsearch alignment for GI: 254780809 and conserved domain: PRK00741
>PRK00741 prfC peptide chain release factor 3; Provisional.
Probab=98.73 E-value=9.1e-08 Score=73.69 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCC-----CCC--CCC-CCEEECC-------------CCCCCCCEEEEEEECCHHC
Q ss_conf 302431146631888999985520002-----345--468-7211000-------------1245683589995081000
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAI-----VTD--IPG-TTRDVLT-------------IDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aI-----Vs~--~~G-TTRD~i~-------------~~~~i~g~~~~l~DTaGir 278 (440)
T Consensus 11 RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDTPGh~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCH
T ss_conf 77999937898989999999974675244846631467886467885889975964861517786789899999098946
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-------H-HHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2410356666788899850301102013589856-------6-343128985322223334465
Q gi|254780809|r 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------E-ISFPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 279 ~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-------~-~~~~~~~~~i~V~NK~Dl~~~ 334 (440)
T Consensus 91 DF---~~e-----~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~a 146 (526)
T PRK00741 91 DF---SED-----TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HH---HHH-----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 77---899-----999998737599999777552333689999988639988999965676789