HHsearch alignment for GI: 254780809 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=96.95  E-value=0.011  Score=38.55  Aligned_cols=109  Identities=23%  Similarity=0.427  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC------HHCCCCC-------------------CC--
Q ss_conf             00112123332234554320230243114663188899998552------0002345-------------------46--
Q gi|254780809|r  199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTD-------------------IP--  251 (440)
Q Consensus       199 i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~------~~aIVs~-------------------~~--  251 (440)
T Consensus        79 v~~eL~~llg~~~--~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~  156 (433)
T PRK00771         79 VYEELVKLLGEEA--EILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY  156 (433)
T ss_pred             HHHHHHHHHCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999849676--56689858999737889789999999999997799467850678836899999999986388731


Q ss_pred             -C-CCEEECCC---CC-CCCCEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf             -8-72110001---24-5683589995081000241-0356666788899850301102013589856
Q gi|254780809|r  252 -G-TTRDVLTI---DL-DLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKK  312 (440)
Q Consensus       252 -G-TTRD~i~~---~~-~i~g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~  312 (440)
T Consensus       157 ~~~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~~d~~Lm~El---~~i~~~~~P~e~llV~Da~~GQ  221 (433)
T PRK00771        157 GDPKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHKLEKDLIEEM---KQIKEITKPDEVILVIDATIGQ  221 (433)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCEEEEEEECCCCH
T ss_conf             7889999999999999984569889997765210409999999---9998775797689986544226