HHsearch alignment for GI: 254780809 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=96.95 E-value=0.011 Score=38.55 Aligned_cols=109 Identities=23% Similarity=0.427 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC------HHCCCCC-------------------CC--
Q ss_conf 00112123332234554320230243114663188899998552------0002345-------------------46--
Q gi|254780809|r 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTD-------------------IP-- 251 (440)
Q Consensus 199 i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~------~~aIVs~-------------------~~-- 251 (440)
T Consensus 79 v~~eL~~llg~~~--~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~ 156 (433)
T PRK00771 79 VYEELVKLLGEEA--EILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY 156 (433)
T ss_pred HHHHHHHHHCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999849676--56689858999737889789999999999997799467850678836899999999986388731
Q ss_pred -C-CCEEECCC---CC-CCCCEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf -8-72110001---24-5683589995081000241-0356666788899850301102013589856
Q gi|254780809|r 252 -G-TTRDVLTI---DL-DLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 (440)
Q Consensus 252 -G-TTRD~i~~---~~-~i~g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~ 312 (440)
T Consensus 157 ~~~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~~d~~Lm~El---~~i~~~~~P~e~llV~Da~~GQ 221 (433)
T PRK00771 157 GDPKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHKLEKDLIEEM---KQIKEITKPDEVILVIDATIGQ 221 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCEEEEEEECCCCH
T ss_conf 7889999999999999984569889997765210409999999---9998775797689986544226