HHsearch alignment for GI: 254780809 and conserved domain: PRK04000
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated.
Probab=98.76 E-value=1.5e-08 Score=79.07 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=86.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH--CCCCCCCCCCEEECCCC--------------------CCCCC------EEEE
Q ss_conf 23024311466318889999855200--02345468721100012--------------------45683------5899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVLTID--------------------LDLEG------YLVK 270 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~--aIVs~~~GTTRD~i~~~--------------------~~i~g------~~~~ 270 (440)
T Consensus 8 ~vNIgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~is 87 (410)
T PRK04000 8 EVNIGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLRRVS 87 (410)
T ss_pred CCEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 52699996517869999988739754238878864881210510100120545554441353023344455544331699
Q ss_pred EEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-H------HHH---HCCCCCCCCCCCCCCCCCCCH---
Q ss_conf 950810002410356666788899850301102013589856-6------343---128985322223334465420---
Q gi|254780809|r 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-E------ISF---PKNIDFIFIGTKSDLYSTYTE--- 337 (440)
Q Consensus 271 l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~------~~~---~~~~~~i~V~NK~Dl~~~~~~--- 337 (440)
T Consensus 88 ~VD~PGHe---~f-----i~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~e~~~~~ 159 (410)
T PRK04000 88 FVDAPGHE---TL-----MATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKEKALEN 159 (410)
T ss_pred EEECCCHH---HH-----HHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 99798879---99-----99998402126679999865778767714999999998099837999962567898999999
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------0000133332323589999999996322
Q gi|254780809|r 338 ---------------EYDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 338 ---------------~~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
T Consensus 160 ~~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~p 202 (410)
T PRK04000 160 YEQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIPTP 202 (410)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 9999998706765689999964777889408999898627787