HHsearch alignment for GI: 254780809 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=100.00 E-value=0 Score=1059.17 Aligned_cols=436 Identities=42% Similarity=0.625 Sum_probs=409.9
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCE
Q ss_conf 96887829898468867616999727388999999871668888753899887548986720699999567799887753
Q gi|254780809|r 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80 (440)
Q Consensus 1 M~~~~dTI~A~aTp~g~~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDv 80 (440)
T Consensus 1 m~~-~dTI~AlaTp~g~saiavIRiSG~~a~~i~~~l~~~~~~~~r~~~~~~~~d~~~~~iD~~l~~~f~~P~SyTGEDv 79 (445)
T PRK05291 1 MMM-NDTIAAIATPPGRGGIGIIRISGPDALEIAQKLFGKKLPKPRTAHYGHIYDPDGEVIDEVLVLYFPAPNSFTGEDV 79 (445)
T ss_pred CCC-CCCEEEECCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCE
T ss_conf 997-8858997788877469999830660999999995689999978999999889988832699999559998877867
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99980898788999999875443200000036899787521567777778898850036889998875314310245665
Q gi|254780809|r 81 AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160 (440)
Q Consensus 81 vEi~~HG~~~i~~~il~~l~~~~g~r~A~pGEFT~RAflNgKidL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~ 160 (440)
T Consensus 80 vEi~~HG~~~i~~~il~~l~~~-G~R~A~pGEFT~RAflNgK~dL~qaEav~dLI~A~t~~~~~~A~~~l~G~ls~~i~~ 158 (445)
T PRK05291 80 VEIQCHGGPVVLNLILQLLLKL-GARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQLQGELSKLINA 158 (445)
T ss_pred EEEECCCCHHHHHHHHHHHHHC-CCEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9997679759999999999975-982248870168898658867999999999984777999999998647934589999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 67769988865444311354431123325888864010001121233322345543202302431146631888999985
Q gi|254780809|r 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 (440)
Q Consensus 161 lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~ 240 (440)
T Consensus 159 ~r~~L~~~~a~iEa~IDF~eE-di~~~~~~~i~~~l~~l~~~i~~ll~~~~~g~~l~~G~~v~i~G~PN~GKSSL~N~L~ 237 (445)
T PRK05291 159 LREELLELLALVEAAIDFPEE-DVEFLSDEKILEKLEELIAELEKLLASAKQGELLREGLKVVIAGRPNVGKSSLLNALL 237 (445)
T ss_pred HHHHHHHHHHHHHHHCCCHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999888865164100-3652219999999999999999999998741786359869988999876899999985
Q ss_pred CCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HH
Q ss_conf 520002345468721100012456835899950810002410356666788899850301102013589856------63
Q gi|254780809|r 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EI 314 (440)
Q Consensus 241 ~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~ 314 (440)
T Consensus 238 ~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~ 317 (445)
T PRK05291 238 GEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIERSRKAIEEADLVLLVLDASEPLTEEDKEIL 317 (445)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHH
T ss_conf 78746731899974040223689999899999899766557458899999999999839999999879988872259999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 43128985322223334465420-00001333323235899999999963220358863201489999999999999999
Q gi|254780809|r 315 SFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 (440)
Q Consensus 315 ~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~~L~~~ 393 (440)
T Consensus 318 ~~~~~~~~i~V~NK~DL~~~~~~~~~~i~iSak~g~Gi~~L~~~i~~~~~~~-~~~~~~~~~~~Rh~~~L~~a~~~L~~~ 396 (445)
T PRK05291 318 EEFKNKPVIVVLNKADLTGEKIDGLPVIRISAKTGEGIDELEEALKQLVGFQ-GNAEGVFLTRARHIEALEQALEHLERA 396 (445)
T ss_pred HHCCCCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 8517998799985120466534789759998378869999999999997046-887770682899999999999999999
Q ss_pred HHH--CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf 753--27998014659999999863567185311587416765057899
Q gi|254780809|r 394 SLN--EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 (440)
Q Consensus 394 ~~~--~~~~~~EliAeeLr~A~~~L~eItG~~~~EdiLd~IFs~FCIGK 440 (440)
T Consensus 397 ~~~l~~~~~~~el~a~~Lr~A~~~L~~itG~~~~edvLd~IFs~FCIGK 445 (445)
T PRK05291 397 LEQLEEGGLPLELLAEDLRLALEALGEITGEFTSEDLLDRIFSSFCIGK 445 (445)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999857997789999999999998788299977999989986379999