HHsearch alignment for GI: 254780809 and conserved domain: PRK05306
>PRK05306 infB translation initiation factor IF-2; Validated.
Probab=99.21 E-value=5.9e-11 Score=95.83 Aligned_cols=138 Identities=24% Similarity=0.341 Sum_probs=93.6
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHH
Q ss_conf 5543202302431146631888999985520002345468-721100012456-83589995081000241035666678
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIK 290 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ 290 (440)
T Consensus 335 ~~~~~r~pvvt~mghvdhgkt~lld~~r~~~v~--~~e~ggitq~iga~~v~~~~~~~itf~dtpgh-------~af~~m 405 (839)
T PRK05306 335 EDLVPRPPVVTIMGHVDHGKTSLLDAIRKTKVA--AGEAGGITQHIGAYQVETENGKKITFLDTPGH-------EAFTAM 405 (839)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCCEEEEEEEEECCCCEEEEECCCCH-------HHHHHH
T ss_conf 105668988988577467731489998628753--55678755222349999569987998558855-------889999
Q ss_pred HHHHHHHHHCCEEECCCCCC---HHHHHHH-----CCCCCCCCCCCCCCCCCCCHH-------------------HHHHH
Q ss_conf 88998503011020135898---5663431-----289853222233344654200-------------------00013
Q gi|254780809|r 291 RTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYSTYTEE-------------------YDHLI 343 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~---~~~~~~~-----~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~I 343 (440)
T Consensus 406 r~-rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg~~~~v~~ 484 (839)
T PRK05306 406 RA-RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGGDTIFVPV 484 (839)
T ss_pred HH-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf 86-35765436999997777756778999999997499889997404678898899999999849864542894489981
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 33323235899999999
Q gi|254780809|r 344 SSFTGEGLEELINKIKS 360 (440)
Q Consensus 344 Saktg~Gi~~L~~~I~~ 360 (440)
T Consensus 485 sa~~~~~~~~l~e~i~l 501 (839)
T PRK05306 485 SAKTGEGIDELLEAILL 501 (839)
T ss_pred EECCCCCHHHHHHHHHH
T ss_conf 51578878999999998