HHsearch alignment for GI: 254780809 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.62 E-value=0.00063 Score=47.04 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=56.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHC-------C-HHCCCCCCCCCCE----EECCCCC---------------------C
Q ss_conf 2023024311466318889999855-------2-0002345468721----1000124---------------------5
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAK-------K-DVAIVTDIPGTTR----DVLTIDL---------------------D 263 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~-------~-~~aIVs~~~GTTR----D~i~~~~---------------------~ 263 (440)
T Consensus 208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~--DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~ 285 (412)
T PRK05703 208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL--DTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQ 285 (412)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 56736999888887567699999999999729981799983--7677779999999999719737984799999999987
Q ss_pred CCCEEEEEEECCHHCCCCH--HHHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH----HHCCC-CCCCCCCCCCCCCCC
Q ss_conf 6835899950810002410--35666678889985030110201358985-6634----31289-853222233344654
Q gi|254780809|r 264 LEGYLVKISDTAGIRETDD--IVEKEGIKRTFLEVENADLILLLKEINSK-KEIS----FPKNI-DFIFIGTKSDLYSTY 335 (440)
Q Consensus 264 i~g~~~~l~DTaGir~t~d--~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~----~~~~~-~~i~V~NK~Dl~~~~ 335 (440)
T Consensus 286 ~~~~dlILIDTaG~s~-~d~~~~~eL--~~~~~~~~~~~-~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~ 361 (412)
T PRK05703 286 LANCDLILIDTAGRSQ-RDPRLISEL--KALIENSKPID-VYLVLSATTKYRDLKDIVKHFSRLPLDGLILTKLDETSSL 361 (412)
T ss_pred HCCCCEEEEECCCCCC-CCHHHHHHH--HHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 1589979996898897-899999999--99986248871-8999759899899999999846799987999711289986
Q ss_pred C
Q ss_conf 2
Q gi|254780809|r 336 T 336 (440)
Q Consensus 336 ~ 336 (440)
T Consensus 362 G 362 (412)
T PRK05703 362 G 362 (412)
T ss_pred C
T ss_conf 2