HHsearch alignment for GI: 254780809 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.62  E-value=0.00063  Score=47.04  Aligned_cols=114  Identities=25%  Similarity=0.292  Sum_probs=56.0

Q ss_pred             HHCCCEEEECCCCCCHHHHHHHHHC-------C-HHCCCCCCCCCCE----EECCCCC---------------------C
Q ss_conf             2023024311466318889999855-------2-0002345468721----1000124---------------------5
Q gi|254780809|r  217 RNGYKIVILGHSNAGKSSLFNALAK-------K-DVAIVTDIPGTTR----DVLTIDL---------------------D  263 (440)
Q Consensus       217 ~~g~~v~i~G~pN~GKSSL~N~L~~-------~-~~aIVs~~~GTTR----D~i~~~~---------------------~  263 (440)
T Consensus       208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~--DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~  285 (412)
T PRK05703        208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL--DTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQ  285 (412)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             56736999888887567699999999999729981799983--7677779999999999719737984799999999987


Q ss_pred             CCCEEEEEEECCHHCCCCH--HHHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH----HHCCC-CCCCCCCCCCCCCCC
Q ss_conf             6835899950810002410--35666678889985030110201358985-6634----31289-853222233344654
Q gi|254780809|r  264 LEGYLVKISDTAGIRETDD--IVEKEGIKRTFLEVENADLILLLKEINSK-KEIS----FPKNI-DFIFIGTKSDLYSTY  335 (440)
Q Consensus       264 i~g~~~~l~DTaGir~t~d--~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~----~~~~~-~~i~V~NK~Dl~~~~  335 (440)
T Consensus       286 ~~~~dlILIDTaG~s~-~d~~~~~eL--~~~~~~~~~~~-~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~  361 (412)
T PRK05703        286 LANCDLILIDTAGRSQ-RDPRLISEL--KALIENSKPID-VYLVLSATTKYRDLKDIVKHFSRLPLDGLILTKLDETSSL  361 (412)
T ss_pred             HCCCCEEEEECCCCCC-CCHHHHHHH--HHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf             1589979996898897-899999999--99986248871-8999759899899999999846799987999711289986


Q ss_pred             C
Q ss_conf             2
Q gi|254780809|r  336 T  336 (440)
Q Consensus       336 ~  336 (440)
T Consensus       362 G  362 (412)
T PRK05703        362 G  362 (412)
T ss_pred             C
T ss_conf             2