HHsearch alignment for GI: 254780809 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.40 E-value=0.0046 Score=41.02 Aligned_cols=113 Identities=28% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCEEEECCCCCCHHHHHHHHH------CCHHCCCCC---CCCC-----------------CEEE--CCCC----CCCCCE
Q ss_conf 302431146631888999985------520002345---4687-----------------2110--0012----456835
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTD---IPGT-----------------TRDV--LTID----LDLEGY 267 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~---~~GT-----------------TRD~--i~~~----~~i~g~ 267 (440)
T Consensus 76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 18999888989889999999999986799089998388888899999999998199535458878999999999997699
Q ss_pred EEEEEECCHHCCC-CHHHHHHHHHHHHHHHHHHCCEEECCCCCCH-HH-H---HHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 8999508100024-1035666678889985030110201358985-66-3---4312898-53222233344654
Q gi|254780809|r 268 LVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSK-KE-I---SFPKNID-FIFIGTKSDLYSTY 335 (440)
Q Consensus 268 ~~~l~DTaGir~t-~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~-~---~~~~~~~-~i~V~NK~Dl~~~~ 335 (440)
T Consensus 156 DvilIDTAGR~~~d~~lm~el--~~~-~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~~~i~gvIlTKlD~ta~g 227 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEM--IET-MGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASS 227 (270)
T ss_pred CEEEEECCCCCCCCHHHHHHH--HHH-HCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 999997999871469999999--998-606389879999868777699999999807799988999653589977