HHsearch alignment for GI: 254780809 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.40  E-value=0.0046  Score=41.02  Aligned_cols=113  Identities=28%  Similarity=0.275  Sum_probs=58.5

Q ss_pred             CCEEEECCCCCCHHHHHHHHH------CCHHCCCCC---CCCC-----------------CEEE--CCCC----CCCCCE
Q ss_conf             302431146631888999985------520002345---4687-----------------2110--0012----456835
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTD---IPGT-----------------TRDV--LTID----LDLEGY  267 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~---~~GT-----------------TRD~--i~~~----~~i~g~  267 (440)
T Consensus        76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCC
T ss_conf             18999888989889999999999986799089998388888899999999998199535458878999999999997699


Q ss_pred             EEEEEECCHHCCC-CHHHHHHHHHHHHHHHHHHCCEEECCCCCCH-HH-H---HHHCCCC-CCCCCCCCCCCCCC
Q ss_conf             8999508100024-1035666678889985030110201358985-66-3---4312898-53222233344654
Q gi|254780809|r  268 LVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSK-KE-I---SFPKNID-FIFIGTKSDLYSTY  335 (440)
Q Consensus       268 ~~~l~DTaGir~t-~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~-~---~~~~~~~-~i~V~NK~Dl~~~~  335 (440)
T Consensus       156 DvilIDTAGR~~~d~~lm~el--~~~-~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~~~i~gvIlTKlD~ta~g  227 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEM--IET-MGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASS  227 (270)
T ss_pred             CEEEEECCCCCCCCHHHHHHH--HHH-HCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf             999997999871469999999--998-606389879999868777699999999807799988999653589977