HHsearch alignment for GI: 254780809 and conserved domain: PRK12312
>PRK12312 infB translation initiation factor IF-2; Provisional.
Probab=99.31 E-value=2.1e-12 Score=105.93 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=93.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 202302431146631888999985520002345468-7211000124568358999508100024103566667888998
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
T Consensus 115 ~R~PvVtimGHVDHGKTsLLD~iR~t~V--~~~EaGGITQhIGA~~v~~~~~~itFiDTPGH-e------AFt~mR~-RG 184 (610)
T PRK12312 115 KRPPIVTIMGHVDHGKTTLLDTIRKTNV--VASEAGGITQHIGAYQVEYQGKKITFIDTPGH-E------AFTEMRA-RG 184 (610)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEEEECCCEEEEECCCCH-H------HHHHHHH-CC
T ss_conf 8899899967725772258899854864--13467766440044999867976899728967-9------8999997-07
Q ss_pred HHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH-------------------HHHHHHHHHH
Q ss_conf 503011020135898---56634-----31289853222233344654200-------------------0001333323
Q gi|254780809|r 296 VENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISSFTG 348 (440)
Q Consensus 296 i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~ISaktg 348 (440)
T Consensus 185 a~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSAktg 264 (610)
T PRK12312 185 AKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSALKN 264 (610)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCC
T ss_conf 76545799999757897742699999999759988998504467889878999999870766788579445999036879
Q ss_pred HHHHHHHHHHHH
Q ss_conf 235899999999
Q gi|254780809|r 349 EGLEELINKIKS 360 (440)
Q Consensus 349 ~Gi~~L~~~I~~ 360 (440)
T Consensus 265 ~GId~LLe~IlL 276 (610)
T PRK12312 265 EGIDELLDSILL 276 (610)
T ss_pred CCHHHHHHHHHH
T ss_conf 899999999999