HHsearch alignment for GI: 254780809 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.44  E-value=0.0022  Score=43.28  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHC-------CHHCCCC-C------------------CCC----CCEEECCCCCCCCCEEEE
Q ss_conf             024311466318889999855-------2000234-5------------------468----721100012456835899
Q gi|254780809|r  221 KIVILGHSNAGKSSLFNALAK-------KDVAIVT-D------------------IPG----TTRDVLTIDLDLEGYLVK  270 (440)
Q Consensus       221 ~v~i~G~pN~GKSSL~N~L~~-------~~~aIVs-~------------------~~G----TTRD~i~~~~~i~g~~~~  270 (440)
T Consensus       225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~-al~~~~~DlI  303 (432)
T PRK12724        225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKE-TLARDGSELI  303 (432)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHH-HHHHCCCCEE
T ss_conf             999989999888999999999999974992799952665377999999999985994599518999999-9985699999


Q ss_pred             EEECCHHCCCCH--HHHHHHHHHHHHHHHHH-C-CEEECCCCCCHH-HHH----HHCCCC-CCCCCCCCCCCCCCC
Q ss_conf             950810002410--35666678889985030-1-102013589856-634----312898-532222333446542
Q gi|254780809|r  271 ISDTAGIRETDD--IVEKEGIKRTFLEVENA-D-LILLLKEINSKK-EIS----FPKNID-FIFIGTKSDLYSTYT  336 (440)
Q Consensus       271 l~DTaGir~t~d--~IE~~GI~ra~~~i~~a-D-lil~v~D~~~~~-~~~----~~~~~~-~i~V~NK~Dl~~~~~  336 (440)
T Consensus       304 LIDTAGrS-~rd~~~~~eL--~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfTKLDET~s~G  376 (432)
T PRK12724        304 LIDTAGYS-HRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG  376 (432)
T ss_pred             EEECCCCC-CCCHHHHHHH--HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf             99299989-7899999999--9999863667885179999788998999999998426999849997122779866