HHsearch alignment for GI: 254780809 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.44 E-value=0.0022 Score=43.28 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=56.8
Q ss_pred CEEEECCCCCCHHHHHHHHHC-------CHHCCCC-C------------------CCC----CCEEECCCCCCCCCEEEE
Q ss_conf 024311466318889999855-------2000234-5------------------468----721100012456835899
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAK-------KDVAIVT-D------------------IPG----TTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~-------~~~aIVs-~------------------~~G----TTRD~i~~~~~i~g~~~~ 270 (440)
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~-al~~~~~DlI 303 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKE-TLARDGSELI 303 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHH-HHHHCCCCEE
T ss_conf 999989999888999999999999974992799952665377999999999985994599518999999-9985699999
Q ss_pred EEECCHHCCCCH--HHHHHHHHHHHHHHHHH-C-CEEECCCCCCHH-HHH----HHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 950810002410--35666678889985030-1-102013589856-634----312898-532222333446542
Q gi|254780809|r 271 ISDTAGIRETDD--IVEKEGIKRTFLEVENA-D-LILLLKEINSKK-EIS----FPKNID-FIFIGTKSDLYSTYT 336 (440)
Q Consensus 271 l~DTaGir~t~d--~IE~~GI~ra~~~i~~a-D-lil~v~D~~~~~-~~~----~~~~~~-~i~V~NK~Dl~~~~~ 336 (440)
T Consensus 304 LIDTAGrS-~rd~~~~~eL--~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfTKLDET~s~G 376 (432)
T PRK12724 304 LIDTAGYS-HRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred EEECCCCC-CCCHHHHHHH--HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 99299989-7899999999--9999863667885179999788998999999998426999849997122779866