HHsearch alignment for GI: 254780809 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.97 E-value=0.0048 Score=40.93 Aligned_cols=118 Identities=24% Similarity=0.297 Sum_probs=60.9
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCC-C---------------CCCCCE-------EECCCCCC
Q ss_conf 4320230243114663188899998552--------000234-5---------------468721-------10001245
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKK--------DVAIVT-D---------------IPGTTR-------DVLTIDLD 263 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs-~---------------~~GTTR-------D~i~~~~~ 263 (440)
T Consensus 344 ~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~ 423 (557)
T PRK12727 344 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER 423 (557)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf 15407647874377767311799999999997399818999726640879999999999839757982899999999998
Q ss_pred CCCEEEEEEECCHHCCCCH-HHHHHHHHHHHHHHHHHCCEEECCCCCC-HHHHH----HHCC-CCCCCCCCCCCCCCCCC
Q ss_conf 6835899950810002410-3566667888998503011020135898-56634----3128-98532222333446542
Q gi|254780809|r 264 LEGYLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINS-KKEIS----FPKN-IDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 264 i~g~~~~l~DTaGir~t~d-~IE~~GI~ra~~~i~~aDlil~v~D~~~-~~~~~----~~~~-~~~i~V~NK~Dl~~~~~ 336 (440)
T Consensus 424 l~~~~lvliDTaG~~~rd~~~~~~~---~~l~~~~~~~~~-Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G 499 (557)
T PRK12727 424 LRDYKLVLIDTAGMGQRDRALAAQL---NWLRAARQVTSL-LVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFG 499 (557)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHH---HHHHCCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 3699989994999884699999999---987514776359-999688998999999998537998748996143678703