HHsearch alignment for GI: 254780809 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.97  E-value=0.0048  Score=40.93  Aligned_cols=118  Identities=24%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             HHHHCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCC-C---------------CCCCCE-------EECCCCCC
Q ss_conf             4320230243114663188899998552--------000234-5---------------468721-------10001245
Q gi|254780809|r  215 IIRNGYKIVILGHSNAGKSSLFNALAKK--------DVAIVT-D---------------IPGTTR-------DVLTIDLD  263 (440)
Q Consensus       215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs-~---------------~~GTTR-------D~i~~~~~  263 (440)
T Consensus       344 ~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~  423 (557)
T PRK12727        344 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER  423 (557)
T ss_pred             HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf             15407647874377767311799999999997399818999726640879999999999839757982899999999998


Q ss_pred             CCCEEEEEEECCHHCCCCH-HHHHHHHHHHHHHHHHHCCEEECCCCCC-HHHHH----HHCC-CCCCCCCCCCCCCCCCC
Q ss_conf             6835899950810002410-3566667888998503011020135898-56634----3128-98532222333446542
Q gi|254780809|r  264 LEGYLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINS-KKEIS----FPKN-IDFIFIGTKSDLYSTYT  336 (440)
Q Consensus       264 i~g~~~~l~DTaGir~t~d-~IE~~GI~ra~~~i~~aDlil~v~D~~~-~~~~~----~~~~-~~~i~V~NK~Dl~~~~~  336 (440)
T Consensus       424 l~~~~lvliDTaG~~~rd~~~~~~~---~~l~~~~~~~~~-Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G  499 (557)
T PRK12727        424 LRDYKLVLIDTAGMGQRDRALAAQL---NWLRAARQVTSL-LVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFG  499 (557)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHH---HHHHCCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf             3699989994999884699999999---987514776359-999688998999999998537998748996143678703