HHsearch alignment for GI: 254780809 and conserved domain: TIGR00750

>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.66  E-value=7.1e-08  Score=74.45  Aligned_cols=156  Identities=22%  Similarity=0.282  Sum_probs=95.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHH------CCHHCCCCCCCCCC---------------------------------------
Q ss_conf             302431146631888999985------52000234546872---------------------------------------
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTDIPGTT---------------------------------------  254 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~~~GTT---------------------------------------  254 (440)
T Consensus        39 ~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~l  118 (333)
T TIGR00750        39 HVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSL  118 (333)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH
T ss_conf             78766468888577799999899976597689998879759755145456887754422223322898567677666752


Q ss_pred             -------EEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCC----CCCC
Q ss_conf             -------11000124568358999508100024103566667888998503011020135898566343128----9853
Q gi|254780809|r  255 -------RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----IDFI  323 (440)
Q Consensus       255 -------RD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~----~~~i  323 (440)
T Consensus       119 GGls~at~~~~~l-ldA~G~DVI~vETVGVGQSE-----------Vdi~~~aDT~v~v~~pg~GDd~Q~iKaG~mEiaDI  186 (333)
T TIGR00750       119 GGLSKATRELVKL-LDAAGYDVILVETVGVGQSE-----------VDIINMADTFVVVTIPGTGDDVQGIKAGVMEIADI  186 (333)
T ss_pred             HHHHHHHHHHHHH-HHHCCCCEEEEEEECCCHHH-----------HHHHHHHCEEEEEECCCCCCHHHHHHHHHHEEEEE
T ss_conf             5787999999999-98638987999841575248-----------78873415058985488783466665443023248


Q ss_pred             CCCCCCCCCCCCC-H-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2222333446542-0-----------------------------------------000013333232358999999999
Q gi|254780809|r  324 FIGTKSDLYSTYT-E-----------------------------------------EYDHLISSFTGEGLEELINKIKSI  361 (440)
Q Consensus       324 ~V~NK~Dl~~~~~-~-----------------------------------------~~~~~ISaktg~Gi~~L~~~I~~~  361 (440)
T Consensus       187 ~VVNKaD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI~eH  266 (333)
T TIGR00750       187 YVVNKADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEGRGIDELWDAIEEH  266 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             78816887665899999999888888899999865333344430265511010589963887335688716789999999


Q ss_pred             HHHHCCCCCCCEEHHHHHHHHHHHHHHHH
Q ss_conf             63220358863201489999999999999
Q gi|254780809|r  362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYL  390 (440)
Q Consensus       362 l~~~~~~~~~~i~~~~Rq~~~L~~a~~~L  390 (440)
T Consensus       267 ~~~l~~---~G~~~~~Rr~r~~~~~~~~~  292 (333)
T TIGR00750       267 KKFLTE---SGLLEEKRRERSVEELKKLV  292 (333)
T ss_pred             HHHHHH---CCCHHHHHHHHHHHHHHHHH
T ss_conf             999986---36067999999999999999