HHsearch alignment for GI: 254780809 and conserved domain: TIGR00993

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=98.06  E-value=5.8e-06  Score=61.13  Aligned_cols=114  Identities=21%  Similarity=0.364  Sum_probs=73.2

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHH-HHHHHHH
Q ss_conf             23024311466318889999855200023454-6872110001245683589995081000241-0356666-7888998
Q gi|254780809|r  219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEG-IKRTFLE  295 (440)
Q Consensus       219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~G-I~ra~~~  295 (440)
T Consensus       124 Sl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~-V~~i~G~V~Gv~i~viDTPGL~~s~~dQs~N~K~L~sVK~~  202 (772)
T TIGR00993       124 SLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTS-VQEIEGLVDGVKIRVIDTPGLKSSASDQSKNEKILSSVKKL  202 (772)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCE-EEEEEEEEEEEEEEEEECCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf             11434551568772010111123500120101466644-77666677107999975788755554333020688888886


Q ss_pred             HHHH--CCEEEC--CCCCCH--HHHHHHCC----------CCCCCCCCCCCCCC
Q ss_conf             5030--110201--358985--66343128----------98532222333446
Q gi|254780809|r  296 VENA--DLILLL--KEINSK--KEISFPKN----------IDFIFIGTKSDLYS  333 (440)
Q Consensus       296 i~~a--Dlil~v--~D~~~~--~~~~~~~~----------~~~i~V~NK~Dl~~  333 (440)
T Consensus       203 ~KK~PPDIVLY~DRLD~Q~RD~~dlPlLRti~~~lGpsIW~N~IV~LTHAAS~P  256 (772)
T TIGR00993       203 IKKNPPDIVLYVDRLDLQTRDLNDLPLLRTITDVLGPSIWKNAIVTLTHAASAP  256 (772)
T ss_pred             HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf             317969669860022333465667744757775616101320432111003687