HHsearch alignment for GI: 254780809 and conserved domain: TIGR03596
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.87 E-value=2.3e-05 Score=57.05 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHCCEEECCCCCCH------HHHHHHCCCCCCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHH
Q ss_conf 678889985030110201358985------663431289853222233344654200-----------000133332323
Q gi|254780809|r 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEG 350 (440)
Q Consensus 288 GI~ra~~~i~~aDlil~v~D~~~~------~~~~~~~~~~~i~V~NK~Dl~~~~~~~-----------~~~~ISaktg~G 350 (440)
T Consensus 11 a~~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~~~~~~~sa~~~~~ 90 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEQKGIKALAINAKKGKG 90 (276)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCC
T ss_conf 99999999875999999986778878689759998669967999734345999999999999984399189864307453
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
T Consensus 91 ~~~l~~~~~~~~~ 103 (276)
T TIGR03596 91 VKKIIKAAKKLLK 103 (276)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999