HHsearch alignment for GI: 254780809 and conserved domain: TIGR03597
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=7.2e-05 Score=53.59 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=52.2
Q ss_pred HHHHHHH-HHHCCEEECCCCCCHH------HHHHHCCCCCCCCCCCCCCCCCCCH-------------------HHHHHH
Q ss_conf 8889985-0301102013589856------6343128985322223334465420-------------------000013
Q gi|254780809|r 290 KRTFLEV-ENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTE-------------------EYDHLI 343 (440)
Q Consensus 290 ~ra~~~i-~~aDlil~v~D~~~~~------~~~~~~~~~~i~V~NK~Dl~~~~~~-------------------~~~~~I 343 (440)
T Consensus 54 ~~~l~~i~~~~~lVv~VvDi~Df~gS~~~~l~~~~~~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~~V~lv 133 (360)
T TIGR03597 54 LNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILV 133 (360)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99998742368379999864147765346499983898589999805428876787999999999999859983668999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3332323589999999996
Q gi|254780809|r 344 SSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 344 Saktg~Gi~~L~~~I~~~l 362 (440)
T Consensus 134 Sa~~g~gi~~l~~~i~~~~ 152 (360)
T TIGR03597 134 SAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 6888989999999999871