HHsearch alignment for GI: 254780809 and conserved domain: cd00154
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.54 E-value=3.6e-14 Score=118.10 Aligned_cols=131 Identities=27% Similarity=0.381 Sum_probs=91.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454-687211000124568358--9995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~~f--~~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~----~--~l--~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF--DENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF----R--SI--TPSYY 70 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H--HH--HHHHH
T ss_conf 9899999699689999999970999--9984886664799999999999999999978982657----7--88--99997
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 71 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~~~~i 150 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENV 150 (159)
T ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 54127567244898899999999999999868988826999974563011689999999999986997999876888198
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|254780809|r 352 EELINKIKS 360 (440)
Q Consensus 352 ~~L~~~I~~ 360 (440)
T Consensus 151 ~~~F~~i~~ 159 (159)
T cd00154 151 EELFQSLAE 159 (159)
T ss_pred HHHHHHHHC
T ss_conf 999999869