HHsearch alignment for GI: 254780809 and conserved domain: cd00154

>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.54  E-value=3.6e-14  Score=118.10  Aligned_cols=131  Identities=27%  Similarity=0.381  Sum_probs=91.4

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             3024311466318889999855200023454-687211000124568358--9995081000241035666678889985
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEV  296 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i  296 (440)
T Consensus         1 ~Ki~vvG~~~vGKTsli~~~~~~~f--~~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~----~--~l--~~~~~   70 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKF--DENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF----R--SI--TPSYY   70 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H--HH--HHHHH
T ss_conf             9899999699689999999970999--9984886664799999999999999999978982657----7--88--99997


Q ss_pred             HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf             03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r  297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL  351 (440)
Q Consensus       297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi  351 (440)
T Consensus        71 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~~~~i  150 (159)
T cd00154          71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENV  150 (159)
T ss_pred             HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             54127567244898899999999999999868988826999974563011689999999999986997999876888198


Q ss_pred             HHHHHHHHH
Q ss_conf             899999999
Q gi|254780809|r  352 EELINKIKS  360 (440)
Q Consensus       352 ~~L~~~I~~  360 (440)
T Consensus       151 ~~~F~~i~~  159 (159)
T cd00154         151 EELFQSLAE  159 (159)
T ss_pred             HHHHHHHHC
T ss_conf             999999869