HHsearch alignment for GI: 254780809 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55  E-value=2.3e-14  Score=119.42  Aligned_cols=131  Identities=24%  Similarity=0.315  Sum_probs=96.2

Q ss_pred             CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0243114663188899998552000234546872110001245683--58999508100024103566667888998503
Q gi|254780809|r  221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVEN  298 (440)
Q Consensus       221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~  298 (440)
T Consensus         1 Ki~ivG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~   70 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA--------MRDLYIRQ   70 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHH--------HHHHHHHH
T ss_conf             999999699679999999961959--98778830048999999766999999997999623557--------88999764


Q ss_pred             HCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCH--H-----------HHHHHHHHHHHHHH
Q ss_conf             011020135898566343-------------128985322223334465420--0-----------00013333232358
Q gi|254780809|r  299 ADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTE--E-----------YDHLISSFTGEGLE  352 (440)
Q Consensus       299 aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~--~-----------~~~~ISaktg~Gi~  352 (440)
T Consensus        71 a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~~~y~e~Sak~g~nV~  150 (160)
T cd00876          71 GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID  150 (160)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf             36899973289878999999999999997287886299999745622307899999999999849979998479894989


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780809|r  353 ELINKIKSI  361 (440)
Q Consensus       353 ~L~~~I~~~  361 (440)
T Consensus       151 e~F~~i~~~  159 (160)
T cd00876         151 EVFKLLVRE  159 (160)
T ss_pred             HHHHHHHHH
T ss_conf             999999972