HHsearch alignment for GI: 254780809 and conserved domain: cd00876
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55 E-value=2.3e-14 Score=119.42 Aligned_cols=131 Identities=24% Similarity=0.315 Sum_probs=96.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234546872110001245683--58999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA--------MRDLYIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHH--------HHHHHHHH
T ss_conf 999999699679999999961959--98778830048999999766999999997999623557--------88999764
Q ss_pred HCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCH--H-----------HHHHHHHHHHHHHH
Q ss_conf 011020135898566343-------------128985322223334465420--0-----------00013333232358
Q gi|254780809|r 299 ADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTE--E-----------YDHLISSFTGEGLE 352 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~--~-----------~~~~ISaktg~Gi~ 352 (440)
T Consensus 71 a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~~~y~e~Sak~g~nV~ 150 (160)
T cd00876 71 GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 36899973289878999999999999997287886299999745622307899999999999849979998479894989
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780809|r 353 ELINKIKSI 361 (440)
Q Consensus 353 ~L~~~I~~~ 361 (440)
T Consensus 151 e~F~~i~~~ 159 (160)
T cd00876 151 EVFKLLVRE 159 (160)
T ss_pred HHHHHHHHH
T ss_conf 999999972