HHsearch alignment for GI: 254780809 and conserved domain: cd00877

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.38  E-value=3.2e-12  Score=104.61  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC--EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf             30243114663188899998552000234546872--110001245683--58999508100024103566667888998
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE  295 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT--RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~  295 (440)
T Consensus         1 ~KivlvGd~~VGKTsli~r~~~~~f---~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~----~----~l~~~y   69 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----G----GLRDGY   69 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHH
T ss_conf             9899999999888999999983999---9986873255679999999997999999975787156----6----687887


Q ss_pred             HHHHCCEEECCCCCCHHHHH-----------HHCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHH
Q ss_conf             50301102013589856634-----------312898532222333446542000-----------00133332323589
Q gi|254780809|r  296 VENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEE  353 (440)
Q Consensus       296 i~~aDlil~v~D~~~~~~~~-----------~~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~  353 (440)
T Consensus        70 ~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~~~~~~~~~~~~~~~~~EtSAk~~~nV~e  149 (166)
T cd00877          70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEK  149 (166)
T ss_pred             HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf             40065799843789888999999999999986899989999986217503667999999997899899984589909899


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999632
Q gi|254780809|r  354 LINKIKSILSN  364 (440)
Q Consensus       354 L~~~I~~~l~~  364 (440)
T Consensus       150 ~F~~la~~il~  160 (166)
T cd00877         150 PFLWLARKLLG  160 (166)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999842