HHsearch alignment for GI: 254780809 and conserved domain: cd01851
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.83 E-value=0.0022 Score=43.20 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=38.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHC-CCCC-CCCCCEEECCCC--C-CCCCEEEEEEECCHHCC
Q ss_conf 0243114663188899998552000-2345-468721100012--4-56835899950810002
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVA-IVTD-IPGTTRDVLTID--L-DLEGYLVKISDTAGIRE 279 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~-~~GTTRD~i~~~--~-~i~g~~~~l~DTaGir~ 279 (440)
T Consensus 9 vvsv~G~~rtGKS~LlN~l~~~~~~F~~~~~~~~~T~Giw~~~~p~~~~~~~~~~llDtEG~~~ 72 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCC
T ss_conf 9998768989889999999488889874788776565069983563578873389983477776